Citrus Sinensis ID: 023354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKKRR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccccccEEEEEccccccccccccccccccHHHHHHccccccEEEEEEcccEEEEccccccccEEEEEEEccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccEcccccEEEcccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHcccccHHHEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccHHHHcEEEEEEEccccccccccccccccHccEEEEEcccccHHccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mashdhhthdhahhhhhdndhdhtheknhgdstatswvgsdgrvyhshdglaphshepiyspgyfsrrappilsrnfneraftvgiggpvgtGKTALMLALCKFLRDKYslaavtndiftkedgeflmrngalpeeriravetggcphaairedisinlgpleelsnlFKADLLLcesggdnlaaNFSRELADYIIYIIDVsggdkiprkggpgitqadlLVINKTDLASAIGADLAVMERDalrmrdggpFIFAQVKHGLGVEEIVNHILQAWEASTGKKRR
Flexible Loop (DISEMBL)
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTndiftkedgefLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQaweastgkkrr
Low Complexity Region (SEG)
MAShdhhthdhahhhhhdndhdhthEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKKRR
Disordered region (IsUnstruct)
**********************************************************IYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE********
Disordered Region (DISOPRED)
******H*********************************************PHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA**********
Disordered Region (DISEMBL)
*********************************ATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE********
Disordered Region (DISPRO)
************************************WVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKKRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q96WV0	286	Uncharacterized urease ac	yes	no	0.805	0.797	0.650	3e-80
A9GP90	302	Urease accessory protein	yes	no	0.763	0.715	0.691	3e-80
Q11VN1	244	Urease accessory protein	yes	no	0.780	0.905	0.653	6e-78
A7HHN3	236	Urease accessory protein	yes	no	0.770	0.923	0.683	1e-76
B8IJ81	204	Urease accessory protein	yes	no	0.671	0.931	0.654	5e-67
A4VQW0	204	Urease accessory protein	yes	no	0.685	0.950	0.630	7e-66
B0UBI3	204	Urease accessory protein	yes	no	0.671	0.931	0.643	9e-66
B1M3X4	205	Urease accessory protein	yes	no	0.671	0.926	0.628	3e-65
Q8DMQ4	200	Urease accessory protein	yes	no	0.678	0.96	0.606	3e-65
A4XQ16	204	Urease accessory protein	yes	no	0.685	0.950	0.615	4e-65

>sp|Q96WV0|UREG_SCHPO Uncharacterized urease accessory protein ureG-like OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCPB16A4.05c PE=3 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 188/229 (82%), Gaps = 1/229 (0%)

Query: 54  HSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLA 112
           HSH+ + +PG Y  R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+ 
Sbjct: 58  HSHDAMETPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIG 117

Query: 113 AVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 172
            VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL + F  +
Sbjct: 118 VVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTE 177

Query: 173 LLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAI 232
           LLL ESGGDNLAAN+SR+LAD+IIY+IDVSGGDKIPRKGGPGIT++DLL+INKTDLA  +
Sbjct: 178 LLLVESGGDNLAANYSRDLADFIIYVIDVSGGDKIPRKGGPGITESDLLIINKTDLAKLV 237

Query: 233 GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKK 281
           GADL+VM+RDA ++R+ GP +FAQVK+ +G++EI   IL A +++   K
Sbjct: 238 GADLSVMDRDAKKIRENGPIVFAQVKNQVGMDEITELILGAAKSAGALK 286

Probably facilitates nickel incorporation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A9GP90|UREG_SORC5 Urease accessory protein UreG OS=Sorangium cellulosum (strain So ce56) GN=ureG PE=3 SV=1

 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 150/217 (69%), Positives = 171/217 (78%), Gaps = 1/217 (0%)

Query: 62  PGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTK 121
           PG FS R  P   R+F+ RAFTVGIGGPVG+GKTAL+LALC+ LRD+  L  VTNDIFT+
Sbjct: 80  PGLFSERDAP-KDRDFSARAFTVGIGGPVGSGKTALVLALCRALRDRMPLGVVTNDIFTQ 138

Query: 122 EDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD 181
           ED EFL RN ALP ERIRAVETGGCPHAAIREDIS NL  L++L +     LL+ ESGGD
Sbjct: 139 EDAEFLHRNKALPPERIRAVETGGCPHAAIREDISHNLVALDDLMDHVAPALLIVESGGD 198

Query: 182 NLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMER 241
           NLAA +SREL DY IY+IDV+GGDK+PRKGGPGITQ+DLLVINKTDLA  +GADL VMER
Sbjct: 199 NLAAQYSRELVDYTIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLAPHVGADLGVMER 258

Query: 242 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 278
           DA RMR  GPF+FAQ     GV EI++HIL A   +T
Sbjct: 259 DARRMRGDGPFLFAQCNRSQGVPEIIDHILSAMRRAT 295

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Sorangium cellulosum (strain So ce56) (taxid: 448385)

>sp|Q11VN1|UREG_CYTH3 Urease accessory protein UreG OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=ureG PE=3 SV=1

 Score =  290 bits (743), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 145/222 (65%), Positives = 172/222 (77%), Gaps = 1/222 (0%)

Query: 61  SPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFT 120
           SPG+F  R      RNF +RAFTVGIGGPVGTGKTA ++ +CK LRDK ++A VTNDIFT
Sbjct: 15  SPGHFHHRELIHEKRNFKKRAFTVGIGGPVGTGKTAWLMQICKALRDKMNIAVVTNDIFT 74

Query: 121 KEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESG 179
            ED EFL+RN AL ++RI  VETGGCPHAAIRED+S N+  LEEL   F   +LL  ESG
Sbjct: 75  SEDAEFLIRNEALSKDRIIGVETGGCPHAAIREDVSQNMYALEELMKRFPDVELLFVESG 134

Query: 180 GDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVM 239
           GDNLAA+FS+EL DY +Y+IDVSGGDKIPRKGGPGITQADLLVINK DLA  + ADL+VM
Sbjct: 135 GDNLAAHFSKELVDYSVYVIDVSGGDKIPRKGGPGITQADLLVINKIDLAHLVNADLSVM 194

Query: 240 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKK 281
           ERD+ +MR  GPF+FA+ K   G++EI+NHIL A E +   K
Sbjct: 195 ERDSKKMRGDGPFLFARAKDCFGIDEIINHILTAREKALEAK 236

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) (taxid: 269798)

>sp|A7HHN3|UREG_ANADF Urease accessory protein UreG OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ureG PE=3 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/218 (68%), Positives = 174/218 (79%)

Query: 62  PGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTK 121
           PG F  R  P    +   RAFTVG+GGPVG+GKTAL+LALC+ LRD  SL  VTNDIFT+
Sbjct: 16  PGSFHDRGAPHARGDLRRRAFTVGVGGPVGSGKTALVLALCRALRDSRSLGVVTNDIFTR 75

Query: 122 EDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD 181
           ED EFL+RN ALP ERIRAVETGGCPHAAIRED++ NL  LEEL+   + ++L CESGGD
Sbjct: 76  EDAEFLVRNDALPAERIRAVETGGCPHAAIREDVTANLLALEELTEAHRPEILFCESGGD 135

Query: 182 NLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMER 241
           NLAA+FSRELADY IY+IDV+GGDK+PRKGGPGITQADLLV+NKTDLA+A+GADL VM R
Sbjct: 136 NLAAHFSRELADYTIYVIDVAGGDKVPRKGGPGITQADLLVVNKTDLATAVGADLDVMAR 195

Query: 242 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTG 279
           DA RMR  GP +FAQV  G+GV EI  H+L A+  + G
Sbjct: 196 DAARMRGDGPVVFAQVTRGVGVPEIAGHVLHAYRHAVG 233

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Anaeromyxobacter sp. (strain Fw109-5) (taxid: 404589)

>sp|B8IJ81|UREG_METNO Urease accessory protein UreG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ureG PE=3 SV=1

 Score =  254 bits (649), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 147/191 (76%), Gaps = 1/191 (0%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
           VGIGGPVG+GKTALM  LCK LR +Y L A+TNDI+TKED   L   GALPEERI  VET
Sbjct: 11  VGIGGPVGSGKTALMEGLCKALRARYDLCAITNDIYTKEDARLLTVAGALPEERIMGVET 70

Query: 144 GGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVS 202
           GGCPH AIRED SINL  + E+   F A DL+L ESGGDNLAA FS ELAD  +Y+IDV+
Sbjct: 71  GGCPHTAIREDASINLAAVAEMRRRFPALDLILIESGGDNLAATFSPELADLTLYVIDVA 130

Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262
           GG+KIPRKGGPGIT++DLLVINKTDLA  +GADLAVME D  RMR   P++F  ++ G G
Sbjct: 131 GGEKIPRKGGPGITRSDLLVINKTDLAPLVGADLAVMEADTRRMRGSRPYVFTSLRQGEG 190

Query: 263 VEEIVNHILQA 273
           VEE+   +++A
Sbjct: 191 VEEVARFVVEA 201

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Methylobacterium nodulans (strain ORS2060 / LMG 21967) (taxid: 460265)

>sp|A4VQW0|UREG_PSEU5 Urease accessory protein UreG OS=Pseudomonas stutzeri (strain A1501) GN=ureG PE=3 SV=1

 Score =  250 bits (639), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 123/195 (63%), Positives = 151/195 (77%), Gaps = 1/195 (0%)

Query: 77  FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136
            N +   VGIGGPVG+GKTAL LALC+ LRD+Y+LA VTNDI+T+ED +FL+RN AL  E
Sbjct: 1   MNTQPLRVGIGGPVGSGKTALTLALCQALRDRYNLAVVTNDIYTQEDAQFLVRNEALAPE 60

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYI 195
           RI  VETGGCPH AIRED SINL  +E+L+  F   DL++ ESGGDNL+A FS EL+D  
Sbjct: 61  RIIGVETGGCPHTAIREDASINLEAVEQLNRRFPGLDLIIVESGGDNLSATFSPELSDLT 120

Query: 196 IYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA 255
           IY+IDVS GDK+PRKGGPGI ++DLLVINK DLA  +GA L VM+RDA +MR   PF+F+
Sbjct: 121 IYVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPMVGASLEVMDRDARKMRGERPFVFS 180

Query: 256 QVKHGLGVEEIVNHI 270
             K G G+EEI++ I
Sbjct: 181 NQKVGQGLEEIISFI 195

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Pseudomonas stutzeri (strain A1501) (taxid: 379731)

>sp|B0UBI3|UREG_METS4 Urease accessory protein UreG OS=Methylobacterium sp. (strain 4-46) GN=ureG PE=3 SV=1

 Score =  250 bits (638), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 123/191 (64%), Positives = 147/191 (76%), Gaps = 1/191 (0%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
           VGIGGPVG+GKTALM  LCK LR ++ L A+TNDI+TKED   L   GALPEERI  VET
Sbjct: 11  VGIGGPVGSGKTALMEGLCKALRGRFDLCAITNDIYTKEDARLLTVAGALPEERIMGVET 70

Query: 144 GGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVS 202
           GGCPH AIRED SINL  + E+   F + DL+L ESGGDNLAA FS ELAD  +Y+IDV+
Sbjct: 71  GGCPHTAIREDASINLAAVAEMRRRFPSLDLILIESGGDNLAATFSPELADLTLYVIDVA 130

Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262
           GG+KIPRKGGPGIT++DLLVINKTDLA  +GADLAVME D  RMR G P++F  ++ G G
Sbjct: 131 GGEKIPRKGGPGITRSDLLVINKTDLAPLVGADLAVMEADTQRMRGGRPYVFTSLRRGDG 190

Query: 263 VEEIVNHILQA 273
           VE +   +++A
Sbjct: 191 VEAVARFVIEA 201

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Methylobacterium sp. (strain 4-46) (taxid: 426117)

>sp|B1M3X4|UREG1_METRJ Urease accessory protein UreG 1 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=ureG1 PE=3 SV=1

 Score =  248 bits (633), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 146/191 (76%), Gaps = 1/191 (0%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
           VGIGGPVG+GKTALM  LCK  RD+Y + A+TNDI+TKED   L   GALPEERI  VET
Sbjct: 10  VGIGGPVGSGKTALMEQLCKRFRDRYEICAITNDIYTKEDARILTVAGALPEERILGVET 69

Query: 144 GGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVS 202
           GGCPH AIRED SINL  + E+S  F K DL+L ESGGDNLAA FS ELAD  +Y+IDV+
Sbjct: 70  GGCPHTAIREDASINLAAVAEMSRRFPKLDLVLIESGGDNLAATFSPELADITLYVIDVA 129

Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262
           GG+KIPRKGGPGIT++DLL++NKTDLA  +GADL+VME D  RMR   P++FA ++ G G
Sbjct: 130 GGEKIPRKGGPGITRSDLLIVNKTDLAPLVGADLSVMESDTQRMRGTRPYVFASLREGTG 189

Query: 263 VEEIVNHILQA 273
            + +   + +A
Sbjct: 190 ADAVARFVEEA 200

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) (taxid: 426355)

>sp|Q8DMQ4|UREG_THEEB Urease accessory protein UreG OS=Thermosynechococcus elongatus (strain BP-1) GN=ureG PE=3 SV=1

 Score =  248 bits (633), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 148/193 (76%), Gaps = 1/193 (0%)

Query: 79  ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
           E    VG+ GPVG+GKTAL+ ALCK LRD+Y LA VTNDI+T+ED +FL+R+ ALP ERI
Sbjct: 2   ETVLRVGVAGPVGSGKTALVDALCKALRDRYRLAVVTNDIYTQEDAQFLVRSQALPPERI 61

Query: 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIY 197
             VETGGCPH AIRED S+NL  +++L   F+  DL+  ESGGDNLAA FS EL D  IY
Sbjct: 62  LGVETGGCPHTAIREDASLNLAAIQQLETAFRPLDLIFVESGGDNLAATFSPELVDLTIY 121

Query: 198 IIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV 257
           +IDV+ GDKIPRKGGPGIT++DLLVINK DLA  +GADL VM+RD L+MR   P++   +
Sbjct: 122 VIDVAAGDKIPRKGGPGITKSDLLVINKIDLAPYVGADLEVMKRDTLKMRGDRPYVMTNL 181

Query: 258 KHGLGVEEIVNHI 270
           K GLG+++++  +
Sbjct: 182 KTGLGLDQVIAFL 194

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|A4XQ16|UREG_PSEMY Urease accessory protein UreG OS=Pseudomonas mendocina (strain ymp) GN=ureG PE=3 SV=1

 Score =  248 bits (633), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 120/195 (61%), Positives = 150/195 (76%), Gaps = 1/195 (0%)

Query: 77  FNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE 136
            N +   VGIGGPVG+GKTAL LALC+ LR++Y++A VTNDI+T+ED +FL+RN AL  E
Sbjct: 1   MNSQPLRVGIGGPVGSGKTALTLALCRALRERYNIAVVTNDIYTQEDAQFLVRNEALEPE 60

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYI 195
           RI  VETGGCPH AIRED SINL  +E+L+  F   DL++ ESGGDNL+A FS EL+D  
Sbjct: 61  RIIGVETGGCPHTAIREDASINLEAVEQLNRRFPGLDLIIVESGGDNLSATFSPELSDLT 120

Query: 196 IYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFA 255
           +Y+IDVS GDK+PRKGGPGI ++DLLVINK DLA  +GA L VMERD L+MR   PF+F+
Sbjct: 121 LYVIDVSAGDKLPRKGGPGICKSDLLVINKVDLAPMVGASLEVMERDTLKMRGDKPFVFS 180

Query: 256 QVKHGLGVEEIVNHI 270
             K G G++EI+  I
Sbjct: 181 NQKIGQGLDEIIAFI 195

Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.

Pseudomonas mendocina (strain ymp) (taxid: 399739)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
222143562	279	urease accessory protein ureG [Morus alb	0.893	0.906	0.913	1e-135
255557339	275	Urease accessory protein ureG, putative	0.876	0.901	0.915	1e-134
297826907	278	predicted protein [Arabidopsis lyrata su	0.908	0.924	0.891	1e-134
449500609	287	PREDICTED: uncharacterized urease access	0.897	0.885	0.898	1e-134
449459358	277	PREDICTED: uncharacterized urease access	0.897	0.916	0.898	1e-134
13161906	278	urease accessory protein G [Solanum tube	0.890	0.906	0.900	1e-134
13161910	278	urease accessory protein G [Solanum tube	0.890	0.906	0.892	1e-133
13161908	280	urease accessory protein G [Solanum tube	0.890	0.9	0.896	1e-133
13161904	272	urease accessory protein G [Solanum tube	0.890	0.926	0.896	1e-133
13161912	284	urease accessory protein G [Solanum tube	0.890	0.887	0.892	1e-133

>gi|222143562|dbj|BAH19310.1| urease accessory protein ureG [Morus alba]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 231/253 (91%), Positives = 246/253 (97%)

Query: 30  GDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGP 89
           GDS   +WVG DGRVYHSHDGLAPHSHEPIYSPG FS+RAPP+L+R+FNERAFT+GIGGP
Sbjct: 26  GDSRTGAWVGPDGRVYHSHDGLAPHSHEPIYSPGSFSKRAPPLLTRDFNERAFTIGIGGP 85

Query: 90  VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA 149
           VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGCPHA
Sbjct: 86  VGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGCPHA 145

Query: 150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR 209
           AIREDISINLGPLEELSNLFKAD+LLCESGGDNLAANFSRELADYIIYIIDVS GDKIPR
Sbjct: 146 AIREDISINLGPLEELSNLFKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPR 205

Query: 210 KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH 269
           KGGPGITQADLLVINKTDLA A+GADLAVMERDALRMRDGGPF+FAQVKHG+G+EEIVNH
Sbjct: 206 KGGPGITQADLLVINKTDLAPAVGADLAVMERDALRMRDGGPFVFAQVKHGVGIEEIVNH 265

Query: 270 ILQAWEASTGKKR 282
           +LQAWEA+TGKKR
Sbjct: 266 VLQAWEAATGKKR 278

Source: Morus alba

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557339|ref|XP_002519700.1| Urease accessory protein ureG, putative [Ricinus communis] gi|223541117|gb|EEF42673.1| Urease accessory protein ureG, putative [Ricinus communis]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/248 (91%), Positives = 244/248 (98%)

Query: 35  TSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGK 94
           TSW+G+DGRVYHSHDGLAPHSHEPIYSPG+FSRRAPPIL+R+F+ERAFTVGIGGPVGTGK
Sbjct: 27  TSWLGADGRVYHSHDGLAPHSHEPIYSPGFFSRRAPPILTRDFSERAFTVGIGGPVGTGK 86

Query: 95  TALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED 154
           TALMLA+CKFLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGCPHAAIRED
Sbjct: 87  TALMLAICKFLRDKYSLAAVTNDIFTKEDGEFLIKNGALPEERIRAVETGGCPHAAIRED 146

Query: 155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPG 214
           ISINLGPLEELS LFK D+LLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPG
Sbjct: 147 ISINLGPLEELSKLFKTDILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPG 206

Query: 215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW 274
           ITQADLLVINKTDLASA+GADL VMERDA+RMRDGGPF+FAQVKHG+GVEEIVNH+LQAW
Sbjct: 207 ITQADLLVINKTDLASAVGADLTVMERDAVRMRDGGPFVFAQVKHGVGVEEIVNHVLQAW 266

Query: 275 EASTGKKR 282
           E +TGKK+
Sbjct: 267 EVATGKKQ 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826907|ref|XP_002881336.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297327175|gb|EFH57595.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/257 (89%), Positives = 246/257 (95%)

Query: 27  KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
           K+ G    +SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct: 22  KSDGGEGKSSWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFSERAFTVGI 81

Query: 87  GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
           GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct: 82  GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 141

Query: 147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK 206
           PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVS GDK
Sbjct: 142 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSAGDK 201

Query: 207 IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 266
           IPRKGGPGITQADLLVINKTDLA+A+GADL+VMERDALRMRDGGPF+FAQVKHGLGVEEI
Sbjct: 202 IPRKGGPGITQADLLVINKTDLAAAVGADLSVMERDALRMRDGGPFVFAQVKHGLGVEEI 261

Query: 267 VNHILQAWEASTGKKRR 283
           VNH++ +WE +TGKKR+
Sbjct: 262 VNHVMHSWEHATGKKRQ 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500609|ref|XP_004161145.1| PREDICTED: uncharacterized urease accessory protein ureG-like [Cucumis sativus]

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/257 (89%), Positives = 249/257 (96%), Gaps = 3/257 (1%)

Query: 26  EKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVG 85
           EK  GDS   S+VG+DGRVYHSHDGLAPHSHEPIYSPG+F+RRAPP+L+RNFNERAFTVG
Sbjct: 33  EKPKGDS---SFVGADGRVYHSHDGLAPHSHEPIYSPGFFTRRAPPLLTRNFNERAFTVG 89

Query: 86  IGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145
           IGGPVGTGKTALMLALC FLRDKYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGG
Sbjct: 90  IGGPVGTGKTALMLALCTFLRDKYSLAAVTNDIFTKEDGEFLVKHGALPEERIRAVETGG 149

Query: 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGD 205
           CPHAAIREDISINLGPLEELSNL+K D+LLCESGGDNLAANFSRELADYIIYIIDVSGGD
Sbjct: 150 CPHAAIREDISINLGPLEELSNLYKTDILLCESGGDNLAANFSRELADYIIYIIDVSGGD 209

Query: 206 KIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265
           KIPRKGGPGITQADLLVINKTDLA+A+GADLAVMERDAL+MRDGGPF+FAQVKHG+GV E
Sbjct: 210 KIPRKGGPGITQADLLVINKTDLATAVGADLAVMERDALKMRDGGPFVFAQVKHGVGVGE 269

Query: 266 IVNHILQAWEASTGKKR 282
           IVNHI+QAWEA+TGKKR
Sbjct: 270 IVNHIIQAWEAATGKKR 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459358|ref|XP_004147413.1| PREDICTED: uncharacterized urease accessory protein ureG-like [Cucumis sativus]

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/257 (89%), Positives = 249/257 (96%), Gaps = 3/257 (1%)

Query: 26  EKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVG 85
           EK  GDS   S+VG+DGRVYHSHDGLAPHSHEPIYSPG+F+RRAPP+L+RNFNERAFTVG
Sbjct: 23  EKPKGDS---SFVGADGRVYHSHDGLAPHSHEPIYSPGFFTRRAPPLLTRNFNERAFTVG 79

Query: 86  IGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG 145
           IGGPVGTGKTALMLALC FLRDKYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGG
Sbjct: 80  IGGPVGTGKTALMLALCTFLRDKYSLAAVTNDIFTKEDGEFLVKHGALPEERIRAVETGG 139

Query: 146 CPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGD 205
           CPHAAIREDISINLGPLEELSNL+K D+LLCESGGDNLAANFSRELADYIIYIIDVSGGD
Sbjct: 140 CPHAAIREDISINLGPLEELSNLYKTDILLCESGGDNLAANFSRELADYIIYIIDVSGGD 199

Query: 206 KIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265
           KIPRKGGPGITQADLLVINKTDLA+A+GADLAVMERDAL+MRDGGPF+FAQVKHG+GV E
Sbjct: 200 KIPRKGGPGITQADLLVINKTDLATAVGADLAVMERDALKMRDGGPFVFAQVKHGVGVGE 259

Query: 266 IVNHILQAWEASTGKKR 282
           IVNHI+QAWEA+TGKKR
Sbjct: 260 IVNHIIQAWEAATGKKR 276

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161906|emb|CAC33000.1| urease accessory protein G [Solanum tuberosum]

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/252 (90%), Positives = 245/252 (97%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSWVG+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP++ RNF+ERAFT+GIGGPVG
Sbjct: 27  TKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLIDRNFSERAFTIGIGGPVG 86

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LRDKYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 87  TGKTALMLALCKVLRDKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 146

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG 211
           REDISINLGPLEELSNL+KAD+LLCESGGDNLAANFSRELADYIIYIIDVS GDKIPRKG
Sbjct: 147 REDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKG 206

Query: 212 GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 271
           GPGITQADLLVINKTDLA A+GADL+VMERDALRMRDGGPF+FAQVKHG+GVE+IVNHIL
Sbjct: 207 GPGITQADLLVINKTDLAPAVGADLSVMERDALRMRDGGPFVFAQVKHGVGVEDIVNHIL 266

Query: 272 QAWEASTGKKRR 283
           QAWE STG K+R
Sbjct: 267 QAWEVSTGNKKR 278

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161910|emb|CAC33002.1| urease accessory protein G [Solanum tuberosum]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/252 (89%), Positives = 246/252 (97%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSW+G+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP++ RNF+ERAFT+GIGGPVG
Sbjct: 27  TKATSWIGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLIERNFSERAFTIGIGGPVG 86

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LR+KYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 87  TGKTALMLALCKVLREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 146

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG 211
           REDISINLGPLEELSNL+KAD+LLCESGGDNLAANFSRELADYIIYIIDVS GDKIPRKG
Sbjct: 147 REDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKG 206

Query: 212 GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 271
           GPGITQADLLVINKTDLA+A+GADL+VMERDALRMRDGGPF+FAQVKHG+GVE+IVNHIL
Sbjct: 207 GPGITQADLLVINKTDLAAAVGADLSVMERDALRMRDGGPFVFAQVKHGVGVEDIVNHIL 266

Query: 272 QAWEASTGKKRR 283
           QAWE STG K+R
Sbjct: 267 QAWEVSTGNKKR 278

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161908|emb|CAC33001.1| urease accessory protein G [Solanum tuberosum]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/252 (89%), Positives = 245/252 (97%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSWVG+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNFNERAFT+GIGGPVG
Sbjct: 29  TKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLNDRNFNERAFTIGIGGPVG 88

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LR+KYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 89  TGKTALMLALCKLLREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 148

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG 211
           REDISINLGPLEELSNL+KAD+LLCESGGDNLAANFSRELADYIIYIIDVS GDKIPRKG
Sbjct: 149 REDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKG 208

Query: 212 GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 271
           GPGITQADLLVINKTDLA+A+GADL+VMERDALRMRDGGPF+FAQVKHG+GVE+IVNHIL
Sbjct: 209 GPGITQADLLVINKTDLAAAVGADLSVMERDALRMRDGGPFVFAQVKHGVGVEDIVNHIL 268

Query: 272 QAWEASTGKKRR 283
           QAWE +TG K+R
Sbjct: 269 QAWEVATGNKKR 280

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161904|emb|CAC32999.1| urease accessory protein G [Solanum tuberosum]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 226/252 (89%), Positives = 245/252 (97%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSWVG+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP++ RNF+ERAFT+GIGGPVG
Sbjct: 21  TKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLIDRNFSERAFTIGIGGPVG 80

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LR+KYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 81  TGKTALMLALCKVLREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 140

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG 211
           REDISINLGPLEELSNL+KAD+LLCESGGDNLAANFSRELADYIIYIIDVS GDKIPRKG
Sbjct: 141 REDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKG 200

Query: 212 GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 271
           GPGITQADLLVINKTDLASA+GADL+VMERDALRMRDGGP +FAQVKHG+GVE+IVNHIL
Sbjct: 201 GPGITQADLLVINKTDLASAVGADLSVMERDALRMRDGGPLVFAQVKHGVGVEDIVNHIL 260

Query: 272 QAWEASTGKKRR 283
           QAWE STG K+R
Sbjct: 261 QAWEVSTGNKKR 272

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13161912|emb|CAC33003.1| urease accessory protein G [Solanum tuberosum]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/252 (89%), Positives = 246/252 (97%)

Query: 32  STATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVG 91
           + ATSWVG+DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP++ RNF+ERAFT+GIGGPVG
Sbjct: 33  TKATSWVGADGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLIDRNFSERAFTIGIGGPVG 92

Query: 92  TGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI 151
           TGKTALMLALCK LR+KYSLAAVTNDIFTKEDGEFL+++GALPEERIRAVETGGCPHAAI
Sbjct: 93  TGKTALMLALCKVLREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAI 152

Query: 152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG 211
           REDISINLGPLEELSNL+KAD+LLCESGGDNLAANFSRELADYIIYIIDVS GDKIPRKG
Sbjct: 153 REDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKG 212

Query: 212 GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 271
           GPGITQADLLVINKTDLA+A+GADL+VMERDALRMRDGGPF+FAQVKHG+GVE+IVNHIL
Sbjct: 213 GPGITQADLLVINKTDLAAAVGADLSVMERDALRMRDGGPFVFAQVKHGVGVEDIVNHIL 272

Query: 272 QAWEASTGKKRR 283
           QAWE +TG K+R
Sbjct: 273 QAWEVATGNKKR 284

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2040894	276	UREG "AT2G34470" [Arabidopsis	0.908	0.931	0.887	3.9e-124
UNIPROTKB|G4NCH0	277	MGG_01086 "Uncharacterized pro	0.819	0.837	0.708	1.9e-89
ASPGD|ASPL0000062920	266	ureD [Emericella nidulans (tax	0.819	0.872	0.680	6.4e-83
POMBASE|SPCPB16A4.05c	286	SPCPB16A4.05c "urease accessor	0.805	0.797	0.650	3.6e-80
UNIPROTKB|Q48DC7	205	ureG "Urease accessory protein	0.681	0.941	0.613	3.5e-59
UNIPROTKB|P18319	205	ureG "Urease accessory protein	0.678	0.936	0.595	7.8e-55
TIGR_CMR|SPO_1717	215	SPO_1717 "urease accessory pro	0.650	0.855	0.594	3.4e-54
UNIPROTKB|P0A664	224	ureG "Urease accessory protein	0.734	0.928	0.515	4.3e-54
TIGR_CMR|CJE_0726	247	CJE_0726 "hydrogenase accessor	0.738	0.846	0.25	5.5e-07
TIGR_CMR|GSU_0305	254	GSU_0305 "hydrogenase accessor	0.738	0.822	0.275	4.2e-06

TAIR|locus:2040894 UREG "AT2G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 228/257 (88%), Positives = 245/257 (95%)

Query:    27 KNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGI 86
             K+ G     SWVG DG+VYHSHDGLAPHSHEPIYSPGYFSRRAPP+  RNF+ERAFTVGI
Sbjct:    20 KSDGGEGKASWVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLHDRNFSERAFTVGI 79

Query:    87 GGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC 146
             GGPVGTGKTALMLALC+FLRDKYSLAAVTNDIFTKEDGEFL++NGALPEERIRAVETGGC
Sbjct:    80 GGPVGTGKTALMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGC 139

Query:   147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK 206
             PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVS GDK
Sbjct:   140 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSAGDK 199

Query:   207 IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 266
             IPRKGGPGITQADLLVINKTDLA+A+GADL+VMERD+LRMRDGGPF+FAQVKHGLGVEEI
Sbjct:   200 IPRKGGPGITQADLLVINKTDLAAAVGADLSVMERDSLRMRDGGPFVFAQVKHGLGVEEI 259

Query:   267 VNHILQAWEASTGKKRR 283
             VNH++ +WE +TGKKR+
Sbjct:   260 VNHVMHSWEHATGKKRQ 276

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0016151 "nickel cation binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=ISS

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0048554 "positive regulation of metalloenzyme activity" evidence=IMP

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|G4NCH0 MGG_01086 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 851 (304.6 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
 Identities = 170/240 (70%), Positives = 192/240 (80%)

Query:    46 HSHDGLA------PHSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALM 98
             HSHDG         HSHE +  PG Y  R  P +  R+F+ERAFT+GIGGPVG+GKTALM
Sbjct:    15 HSHDGSTFNAQEHGHSHEILTGPGSYLGREMPIVEGRDFSERAFTIGIGGPVGSGKTALM 74

Query:    99 LALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN 158
             LALC  LRD +SLAAVTNDIFT+ED EFL RN ALP  RIRA+ETGGCPHAA+REDIS N
Sbjct:    75 LALCLALRDTHSLAAVTNDIFTREDAEFLTRNKALPPSRIRAIETGGCPHAAVREDISAN 134

Query:   159 LGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQ 217
             L  LE+L   F   DLLL ESGGDNLAAN+SRELAD+IIY+IDVSGGDKIPRKGGPGITQ
Sbjct:   135 LACLEDLHRTFNGVDLLLIESGGDNLAANYSRELADFIIYVIDVSGGDKIPRKGGPGITQ 194

Query:   218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277
             +DLLV+NKTDLA  +GADL VMERDA +MR+GGP +FAQVK  +GVE IVN IL AW+AS
Sbjct:   195 SDLLVVNKTDLAEIVGADLGVMERDARKMREGGPTVFAQVKKSVGVEHIVNLILSAWKAS 254

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000062920 ureD [Emericella nidulans (taxid:162425)]

 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 160/235 (68%), Positives = 194/235 (82%)

Query:    46 HSHDGLAPH--SHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALC 102
             HSHD +A H  SHE +  PG Y +R  P I  R++++RAFT+GIGGPVG+GKTALMLALC
Sbjct:     9 HSHDNIADHGHSHEILDGPGSYLNREQPLIEDRDWSDRAFTIGIGGPVGSGKTALMLALC 68

Query:   103 KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL 162
             + LRD+Y++AAVTNDIFT+ED EFL RN AL  +RIRA+ETGGCPHAA+REDIS NL  L
Sbjct:    69 RALRDEYNIAAVTNDIFTREDAEFLTRNKALSPDRIRAIETGGCPHAAVREDISANLLAL 128

Query:   163 EELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLV 222
             + L   F+ DLLL ESGGDNLAAN+SRELAD+IIY+IDV+GGDK+PRKGGPGIT +DLLV
Sbjct:   129 QNLHRQFQTDLLLIESGGDNLAANYSRELADFIIYVIDVAGGDKVPRKGGPGITGSDLLV 188

Query:   223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS 277
             +NK DLA A+GAD++VMERDA +MR+GGP +FA VK   GV+ IVN IL AW+AS
Sbjct:   189 VNKIDLAEAVGADISVMERDAAKMREGGPTVFAVVKKDQGVDHIVNLILSAWKAS 243

GO:0043419 "urea catabolic process" evidence=IMP

GO:0009039 "urease activity" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016151 "nickel cation binding" evidence=IEA

POMBASE|SPCPB16A4.05c SPCPB16A4.05c "urease accessory protein UREG (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 788 (282.4 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
 Identities = 149/229 (65%), Positives = 188/229 (82%)

Query:    54 HSHEPIYSPG-YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLA 112
             HSH+ + +PG Y  R  P    R+F+ RAFT+G+GGPVG+GKTAL+L LC+ L +KYS+ 
Sbjct:    58 HSHDAMETPGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEKYSIG 117

Query:   113 AVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKAD 172
              VTNDIFT+ED EFL+RN ALPEERIRA+ETGGCPHAAIRED+S NL  LEEL + F  +
Sbjct:   118 VVTNDIFTREDQEFLIRNKALPEERIRAIETGGCPHAAIREDVSGNLVALEELQSEFNTE 177

Query:   173 LLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAI 232
             LLL ESGGDNLAAN+SR+LAD+IIY+IDVSGGDKIPRKGGPGIT++DLL+INKTDLA  +
Sbjct:   178 LLLVESGGDNLAANYSRDLADFIIYVIDVSGGDKIPRKGGPGITESDLLIINKTDLAKLV 237

Query:   233 GADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEASTGKK 281
             GADL+VM+RDA ++R+ GP +FAQVK+ +G++EI   IL A +++   K
Sbjct:   238 GADLSVMDRDAKKIRENGPIVFAQVKNQVGMDEITELILGAAKSAGALK 286

GO:0003924 "GTPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016151 "nickel cation binding" evidence=IEA

GO:0016530 "metallochaperone activity" evidence=IEA

GO:0019627 "urea metabolic process" evidence=ISM

GO:0042803 "protein homodimerization activity" evidence=IEA

UNIPROTKB|Q48DC7 ureG "Urease accessory protein UreG" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 119/194 (61%), Positives = 148/194 (76%)

Query:    78 NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137
             N +   VGIGGPVG+GKTAL LALC  LRD+Y+LA VTNDI+T+ED +FL+RN AL  ER
Sbjct:     2 NSQPLRVGIGGPVGSGKTALTLALCLALRDRYNLAVVTNDIYTREDADFLVRNEALAPER 61

Query:   138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYII 196
             I  VETGGCPH AIRED SINL  +++L+  F+  DL++ ESGGDNL+A FS EL+D  I
Sbjct:    62 IIGVETGGCPHTAIREDASINLEAVDQLNRRFEGLDLIIVESGGDNLSATFSPELSDLTI 121

Query:   197 YIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ 256
             Y+IDVS GDK+PRKGGPGI ++DLLVINK DLA  +GA L +M+ D  RMR   PF+F+ 
Sbjct:   122 YVIDVSAGDKLPRKGGPGICKSDLLVINKIDLAPLVGASLEMMDSDTRRMRGEKPFVFSN 181

Query:   257 VKHGLGVEEIVNHI 270
              K G G+E+I+  I
Sbjct:   182 QKTGQGLEQIIAFI 195

GO:0016530 "metallochaperone activity" evidence=ISS

UNIPROTKB|P18319 ureG "Urease accessory protein UreG" [Enterobacter aerogenes (taxid:548)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 115/193 (59%), Positives = 136/193 (70%)

Query:    76 NFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE 135
             N  +    VG+GGPVG+GKTAL+ ALCK +RD + LA VTNDI+TKED   L   GAL  
Sbjct:     2 NSYKHPLRVGVGGPVGSGKTALLEALCKAMRDTWQLAVVTNDIYTKEDQRILTEAGALAP 61

Query:   136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADY 194
             ERI  VETGGCPH AIRED S+NL  +E LS  F   DL+  ESGGDNL+A FS ELAD 
Sbjct:    62 ERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLDLIFVESGGDNLSATFSPELADL 121

Query:   195 IIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF 254
              IY+IDV+ G+KIPRKGGPGIT++D LVINKTDLA  +GA L VM  D  RMR   P+ F
Sbjct:   122 TIYVIDVAEGEKIPRKGGPGITKSDFLVINKTDLAPYVGASLEVMASDTQRMRGDRPWTF 181

Query:   255 AQVKHGLGVEEIV 267
               +K G G+  I+
Sbjct:   182 TNLKQGDGLSTII 194

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|SPO_1717 SPO_1717 "urease accessory protein UreG" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 110/185 (59%), Positives = 139/185 (75%)

Query:    84 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
             VGIGGPVG GKT L  AL + LRD +S+  +TNDI+T+ED E LMR   LP++RI  VET
Sbjct:    10 VGIGGPVGAGKTTLTAALSEALRDSHSIGVITNDIYTREDAEALMRLQILPQDRIIGVET 69

Query:   144 GGCPHAAIREDISINLGPLEELSNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVS 202
             GGCPH AIRED SINL  + E+       +++L ESGGDNL+A FS ELAD  +Y+IDV+
Sbjct:    70 GGCPHTAIREDASINLAAVAEMERRHPGIEIILIESGGDNLSATFSPELADVTLYVIDVA 129

Query:   203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262
              G++IPRKGGP IT++D+L+INKTDLA  +GA L VMERDA RMR G PF+F+ +++  G
Sbjct:   130 AGEEIPRKGGPAITKSDILIINKTDLAPHVGASLEVMERDAGRMRCGRPFVFSSLRNRDG 189

Query:   263 VEEIV 267
             V EIV
Sbjct:   190 VAEIV 194

GO:0019627 "urea metabolic process" evidence=ISS

GO:0046872 "metal ion binding" evidence=ISS

UNIPROTKB|P0A664 ureG "Urease accessory protein UreG" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 115/223 (51%), Positives = 149/223 (66%)

Query:    46 HSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL 105
             HSH    PHSH     P    +   P+           +G+GGPVG+GKTAL+ ALC+ L
Sbjct:     4 HSH----PHSHTVPARPRRVRKPGEPL----------RIGVGGPVGSGKTALVAALCRQL 49

Query:   106 RDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEEL 165
             R + SLA +TNDI+T ED +FL  +  LP++RI AV+TGGCPH AIR+DI+ NL  ++EL
Sbjct:    50 RGELSLAVLTNDIYTTEDADFLRTHAVLPDDRIAAVQTGGCPHTAIRDDITANLDAIDEL 109

Query:   166 SNLFKA-DLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVIN 224
                  A DL+L ESGGDNL A FS  L D  I++IDV+GGDK+PRKGGPG+T +DLLV+N
Sbjct:   110 MAAHDALDLILVESGGDNLTATFSSGLVDAQIFVIDVAGGDKVPRKGGPGVTYSDLLVVN 169

Query:   225 KTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 267
             KTDLA+ +GADLAVM RDA  +RDG P +   +       ++V
Sbjct:   170 KTDLAALVGADLAVMARDADAVRDGRPTVLQSLTEDPAASDVV 212

GO:0003924 "GTPase activity" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

TIGR_CMR|CJE_0726 CJE_0726 "hydrogenase accessory protein HypB" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 135 (52.6 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 58/232 (25%), Positives = 96/232 (41%)

Query:    46 HSHDGLAPHSHE-PIYSPGYFSRRAPPILSRN----------FNE-RAFTVGIGGPVGTG 93
             H+H     H HE P    G        ILS+N          FNE     + +    G+G
Sbjct:    13 HTHGHHHDHHHENPSLKEGKTIEVISKILSKNDEEAKHNRAHFNEANTLCINLMSSPGSG 72

Query:    94 KTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE 153
             KT L+ +  K L+++  +A +  D+ T  D   +   GAL  +    + TG   H     
Sbjct:    73 KTTLLESTIKALKNELKIAVIEGDLETNNDALRVKNAGALAYQ----ITTGQSCHL---- 124

Query:   154 DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYI-IYIIDVSGGDKIPRKGG 212
             D  +    L  L+ +   DLL  E+ G NL    S +L +++ + ++ ++ G   P+K  
Sbjct:   125 DAFMVHEALHHLA-IDDVDLLFIENVG-NLVCPASYDLGEHLNVVLLSITEGSDKPQKYP 182

Query:   213 PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264
                 +AD+++I K DLA     D+         +      I    K+G  +E
Sbjct:   183 VMFKKADIVLITKADLAHHFDFDIKEATSLIKELNPRADIITLDAKNGTNME 234

GO:0000166 "nucleotide binding" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0016530 "metallochaperone activity" evidence=ISS

TIGR_CMR|GSU_0305 GSU_0305 "hydrogenase accessory protein HypB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 128 (50.1 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 65/236 (27%), Positives = 101/236 (42%)

Query:    45 YHSHDGLAPHSHEPIYSPGYFSRRAP---PILSRN--F--NERA-------FTVGIGGPV 90
             +H H     HSH   +     SR+      ILSRN  F  + RA       F + +    
Sbjct:    15 HHEHGHGHSHSHGHTHDDERESRKIAVETDILSRNNRFAADNRALFAKKGVFVLNLVSSP 74

Query:    91 GTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG-GCPHA 149
             G+GKT  +      L D+Y  A +  D  T  D + +   G +P    R + TG GC H 
Sbjct:    75 GSGKTTTLERTLGDLSDRYRCAVIEGDQQTDNDAQRIAATG-VPA---RQINTGAGC-HL 129

Query:   150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYI-IYIIDVSGGDKIP 208
                 D  + +G   E  +L   DLLL E+ G NL    S +L ++  + ++ V+ G+  P
Sbjct:   130 ----DAHM-VGHAAEEFDLDALDLLLVENVG-NLVCPASFDLGEHHKVVVLSVTEGEDKP 183

Query:   209 RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE 264
              K       AD++++NK DL   +  D+      A R+  G        + G G++
Sbjct:   184 LKYPNMFHAADVMLLNKIDLLPYVDFDVEKCLEMARRVSPGITIFQVSSRTGEGMD 239

GO:0000166 "nucleotide binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0016530 "metallochaperone activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02FC5	UREG_PSEAB	No assigned EC number	0.6205	0.6855	0.9509	yes	no
B1ZHN6	UREG1_METPB	No assigned EC number	0.6230	0.6713	0.9313	yes	no
B8EPU6	UREG_METSB	No assigned EC number	0.6263	0.6678	0.9174	yes	no
Q6FD79	UREG_ACIAD	No assigned EC number	0.6020	0.6855	0.9509	yes	no
Q0I662	UREG_SYNS3	No assigned EC number	0.6093	0.6749	0.955	yes	no
B0V9P2	UREG_ACIBY	No assigned EC number	0.6122	0.6855	0.9509	yes	no
Q0AC95	UREG_ALHEH	No assigned EC number	0.6113	0.6784	0.9099	yes	no
A3M3F5	UREG_ACIBT	No assigned EC number	0.6122	0.6855	0.9509	yes	no
Q8DMQ4	UREG_THEEB	No assigned EC number	0.6062	0.6784	0.96	yes	no
A6SZ10	UREG_JANMA	No assigned EC number	0.6157	0.6678	0.8957	yes	no
Q2SDP8	UREG_HAHCH	No assigned EC number	0.5816	0.6890	0.9558	yes	no
A9W6X0	UREG1_METEP	No assigned EC number	0.6230	0.6713	0.9313	yes	no
Q7U3I9	UREG_SYNPX	No assigned EC number	0.6041	0.6749	0.9502	yes	no
Q7V3V8	UREG_PROMM	No assigned EC number	0.6093	0.6749	0.9455	yes	no
A2CDZ5	UREG_PROM3	No assigned EC number	0.6145	0.6749	0.9408	yes	no
C3K4L3	UREG_PSEFS	No assigned EC number	0.6307	0.6855	0.9509	yes	no
A4VQW0	UREG_PSEU5	No assigned EC number	0.6307	0.6855	0.9509	yes	no
Q96WV0	UREG_SCHPO	No assigned EC number	0.6506	0.8056	0.7972	yes	no
Q3AGD6	UREG_SYNSC	No assigned EC number	0.6093	0.6749	0.9502	yes	no
B5FBC3	UREG_VIBFM	No assigned EC number	0.5721	0.6819	0.9368	yes	no
Q11VN1	UREG_CYTH3	No assigned EC number	0.6531	0.7809	0.9057	yes	no
B8IJ81	UREG_METNO	No assigned EC number	0.6544	0.6713	0.9313	yes	no
B2HVS4	UREG_ACIBC	No assigned EC number	0.6122	0.6855	0.9509	yes	no
Q3AVR7	UREG_SYNS9	No assigned EC number	0.6041	0.6749	0.9502	yes	no
B4RSY2	UREG_ALTMD	No assigned EC number	0.5692	0.6855	0.9556	yes	no
Q9HUS0	UREG_PSEAE	No assigned EC number	0.6205	0.6855	0.9509	yes	no
B0VSB5	UREG_ACIBS	No assigned EC number	0.6122	0.6855	0.9509	yes	no
A1KBB1	UREG_AZOSB	No assigned EC number	0.6237	0.6819	0.9323	yes	no
B0UBI3	UREG_METS4	No assigned EC number	0.6439	0.6713	0.9313	yes	no
A7HHN3	UREG_ANADF	No assigned EC number	0.6834	0.7703	0.9237	yes	no
Q0BHN8	UREG_BURCM	No assigned EC number	0.5462	0.7243	0.9534	yes	no
A6UC29	UREG_SINMW	No assigned EC number	0.6335	0.6713	0.9359	yes	no
Q3J773	UREG_NITOC	No assigned EC number	0.5897	0.6855	0.9556	yes	no
A4XQ16	UREG_PSEMY	No assigned EC number	0.6153	0.6855	0.9509	yes	no
B1M3X4	UREG1_METRJ	No assigned EC number	0.6282	0.6713	0.9268	yes	no
B7I8T8	UREG_ACIB5	No assigned EC number	0.6122	0.6855	0.9509	yes	no
B7GXU0	UREG_ACIB3	No assigned EC number	0.6122	0.6855	0.9509	yes	no
A9GP90	UREG_SORC5	No assigned EC number	0.6912	0.7632	0.7152	yes	no
B1YUF6	UREG_BURA4	No assigned EC number	0.5462	0.7243	0.9534	yes	no
A1SYY4	UREG_PSYIN	No assigned EC number	0.5765	0.6678	0.9310	yes	no
Q1H0F5	UREG_METFK	No assigned EC number	0.6489	0.6607	0.9211	yes	no
Q9FAS2	UREG_VIBPH	No assigned EC number	0.5824	0.6819	0.9103	yes	no
C1DMZ7	UREG_AZOVD	No assigned EC number	0.6358	0.6855	0.9509	yes	no
A6VD02	UREG_PSEA7	No assigned EC number	0.6102	0.6855	0.9509	yes	no
B7V1V6	UREG_PSEA8	No assigned EC number	0.6205	0.6855	0.9509	yes	no
Q92MY5	UREG_RHIME	No assigned EC number	0.6263	0.6678	0.9310	yes	no
C3MGH8	UREG_RHISN	No assigned EC number	0.6276	0.6607	0.9211	yes	no
C5CY05	UREG_VARPS	No assigned EC number	0.6117	0.6607	0.8657	yes	no
A4JC39	UREG_BURVG	No assigned EC number	0.5462	0.7243	0.9534	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
TIGR00101	199	TIGR00101, ureG, urease accessory protein UreG	3e-89
COG0378	202	COG0378, HypB, Ni2+-binding GTPase involved in reg	7e-76
pfam02492	178	pfam02492, cobW, CobW/HypB/UreG, nucleotide-bindin	2e-44
TIGR00073	208	TIGR00073, hypB, hydrogenase accessory protein Hyp	2e-17
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	2e-05
pfam03308	267	pfam03308, ArgK, ArgK protein	3e-05
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	3e-05
COG1703	323	COG1703, ArgK, Putative periplasmic protein kinase	1e-04
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	2e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	4e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	6e-04
TIGR00750	300	TIGR00750, lao, LAO/AO transport system ATPase	6e-04
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	6e-04
PRK13263	206	PRK13263, ureE, urease accessory protein UreE; Pro	8e-04
PRK10019	279	PRK10019, PRK10019, nickel/cobalt efflux protein R	0.001
pfam10986	161	pfam10986, DUF2796, Protein of unknown function (D	0.001
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.002
PRK09545	311	PRK09545, znuA, high-affinity zinc transporter per	0.003
PRK13263	206	PRK13263, ureE, urease accessory protein UreE; Pro	0.003
cd01019	286	cd01019, ZnuA, Zinc binding protein ZnuA	0.003
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	0.003
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	0.003
cd01019	286	cd01019, ZnuA, Zinc binding protein ZnuA	0.004
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	0.004

>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG

 Score =  263 bits (673), Expect = 3e-89
 Identities = 113/188 (60%), Positives = 143/188 (76%), Gaps = 1/188 (0%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
           +G+ GPVG+GKTAL+ AL + LR KY LA +TNDI+T+ED EFL++N ALP ERI  VET
Sbjct: 4   IGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVET 63

Query: 144 GGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIIDVS 202
           GGCPH AIRED S+NL  + E+   F   +++  ESGGDNL+A FS ELAD  I++IDV+
Sbjct: 64  GGCPHTAIREDASMNLEAVAEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVA 123

Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262
            GDKIPRKGGPGIT++DLLVINK DLA  +GADL VMERDA +MR   PFIF  +K   G
Sbjct: 124 AGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG 183

Query: 263 VEEIVNHI 270
           ++ +++ I
Sbjct: 184 LDTVIDWI 191

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel [Central intermediary metabolism, Nitrogen metabolism]. Length = 199

>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

 Score =  229 bits (586), Expect = 7e-76
 Identities = 95/198 (47%), Positives = 121/198 (61%), Gaps = 12/198 (6%)

Query: 78  NERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER 137
           N     +G+GGP G+GKTAL+    + L+D+Y +A +T DI+TKED + L +    P E 
Sbjct: 10  NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEP 66

Query: 138 IRAVETG-GCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELAD-Y 194
           I  VETG GC H     D S+NL  +EEL   F   DLL  ES G NL   FS +L D  
Sbjct: 67  IIGVETGKGC-H----LDASMNLEAIEELVLDFPDLDLLFIESVG-NLVCPFSPDLGDHL 120

Query: 195 IIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF 254
            + +IDV+ G+ IPRKGGPGI +ADLLVINKTDLA  +GADL VM RDA  +    P IF
Sbjct: 121 RVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIF 180

Query: 255 AQVKHGLGVEEIVNHILQ 272
             +K G G++E +  I  
Sbjct: 181 TNLKTGEGLDEWLRFIEP 198

Length = 202

>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain

 Score =  148 bits (375), Expect = 2e-44
 Identities = 62/187 (33%), Positives = 85/187 (45%), Gaps = 23/187 (12%)

Query: 82  FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF-TKEDGEFLMRNGALPEERIRA 140
               + G +G+GKT L+  L +  R+   +A + ND   T  D E L   GAL    I  
Sbjct: 1   PVTVLTGFLGSGKTTLLEHLLEKNREGLKIAVIVNDFGETGIDAELLRETGAL----IVE 56

Query: 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANF-----------SR 189
           +  G       RED+S+ L  L EL    + DLL  E+ G                  S 
Sbjct: 57  LNNGCICCTL-REDLSMVLEALLELKE--RLDLLFIETTG-LACPAPVAQTFLSPELRSD 112

Query: 190 ELADYIIYIIDVSG--GDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR 247
              D ++ ++DV+   G+ IP K    I  ADL+VINKTDLA A+ ADL  +E D  R+ 
Sbjct: 113 LGLDGVVTVVDVAETEGEDIPEKAPDQIAFADLIVINKTDLAPAV-ADLEKLEADLRRLN 171

Query: 248 DGGPFIF 254
              P I 
Sbjct: 172 PEAPIIP 178

This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans. Length = 178

>gnl|CDD|232811 TIGR00073, hypB, hydrogenase accessory protein HypB

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 18/204 (8%)

Query: 75  RNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL 133
              ++     +      G+GKT L+  L   L+D+  +A +  D+ TK D E L + GA 
Sbjct: 15  ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAP 74

Query: 134 PEERIRAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL 191
                  + TG   H  A +          LE+L      DLL  E+ G NL      +L
Sbjct: 75  AI----QINTGKECHLDAHMVAHA------LEDLPLD-DIDLLFIENVG-NLVCPADFDL 122

Query: 192 -ADYIIYIIDVSGGDKIPRKGGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRMRDG 249
                + ++ V+ GD  P K  PG+ + ADL+VINK DLA A+G D+  M+ DA ++   
Sbjct: 123 GEHMRVVLLSVTEGDDKPLKY-PGMFKEADLIVINKADLAEAVGFDVEKMKADAKKINPE 181

Query: 250 GPFIFAQVKHGLGVEEIVNHILQA 273
              I   +K G G++E +  +   
Sbjct: 182 AEIILMSLKTGEGLDEWLEFLEGQ 205

A GTP hydrolase for assembly of nickel metallocenter of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel. hits scoring 75 and above are safe as orthologs. [SS 1/05/04 I changed the role_ID and process GO from protein folding to to protein modification, since a protein folding role has not been established, but HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.] [Protein fate, Protein modification and repair]. Length = 208

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 6   HHTHDHAHHHHHDNDHDHTHEKNH-GDSTATSW 37
           HH HDH H H H++ HDH H  +H   +TA  +
Sbjct: 122 HHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEY 154

Length = 279

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 62/229 (27%), Positives = 95/229 (41%), Gaps = 38/229 (16%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
           RA  VGI G  G GK+ L+ AL   LR + + +A +  D  +   G      G++  +R 
Sbjct: 28  RAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTG------GSILGDRT 81

Query: 139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG------DNLAANFSR--- 189
           R       P A IR   S + G L  LS   +  +LL ++ G      + +    S    
Sbjct: 82  RMQRLAVDPGAFIRS--SPSRGALGGLSRATREAILLLDAAGFDVIIIETVGVGQSEVDI 139

Query: 190 -ELADYIIYIIDVSGGDKIP--RKGGPGITQADLLVINKTDLASAIGADLAVME-RDALR 245
             +AD  + +    GGD +   + G   I  AD+ V+NK DL    GA+    E R AL 
Sbjct: 140 ANMADTFVLVTIPGGGDDLQGIKAGLMEI--ADIYVVNKADLP---GAERTARELRSALH 194

Query: 246 MRDGG------PFIFAQVKHGLGVEEIVNHILQAWEAST-----GKKRR 283
           +          P +      G G++E+ + I +  E  T       +RR
Sbjct: 195 LLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHREFLTATGLLAARRR 243

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTH 25
            DHH  DH H  H  +D DH H
Sbjct: 119 DDHHDDDHDHAGHEKSDEDHHH 140

Length = 311

>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 46/234 (19%)

Query: 80  RAFTVGIGGPVGTGKTALMLAL-CKFLRDKYSLAAVTND---IFTKEDGEFLMRNGALPE 135
            A  +GI G  G GK+ L+ AL  +     + +A +  D    FT          G++  
Sbjct: 50  NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTG---------GSILG 100

Query: 136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNL------AANFS- 188
           +RIR       P   IR   S + G L  LS   +  + L ++ G ++          S 
Sbjct: 101 DRIRMQRLAVDPGVFIRS--SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE 158

Query: 189 ---RELADYIIYIIDVSGGDKIP--RKGGPGITQADLLVINKTDLASAIGADLAVME-RD 242
                +AD  + ++    GD +   + G   I  AD++VINK D     GA+ A  E R 
Sbjct: 159 VDIANMADTFLVVMIPGAGDDLQGIKAGIMEI--ADIIVINKADRK---GAEKAARELRS 213

Query: 243 ALRMRDGG--------PFIFAQVKHGLGVEEIVNHILQAWEASTG-----KKRR 283
           AL +            P +      G G++E+ + I    +  T      +KRR
Sbjct: 214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLFTEKRR 267

Length = 323

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 1   MASHDHHTHDHAHHHHHDNDHDHTHEKNHGD 31
           M       HD  H H      D  H  +HG+
Sbjct: 114 MKGAHDDHHDDDHDHAGHEKSDEDH--HHGE 142

Length = 311

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 3   SHDHHTHDHAHHHHHDNDHDHTHEKNHG 30
             +   + H H H HD+DHDH H  +HG
Sbjct: 113 ERNWLENMHHHDHDHDHDHDHEHHHDHG 140

Length = 279

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 4   HDH-HTHDHAHHHHHDNDHDHTH 25
           HDH H HDH HHH H + H H H
Sbjct: 125 HDHDHDHDHEHHHDHGHHHHHEH 147

Length = 279

>gnl|CDD|129833 TIGR00750, lao, LAO/AO transport system ATPase

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 31/227 (13%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
            A  VGI G  G GK+ L+ AL   LR +   +A +  D  +   G      G++  +R 
Sbjct: 33  NAHRVGITGTPGAGKSTLLEALGMELRRRGLRVAVIAVDPSSPFTG------GSILGDRT 86

Query: 139 RAVETGGCPHAAIRE-DISINLGPLE----ELSNLFKA---DLLLCESGGDNLAANFSRE 190
           R       P A IR      +LG L     EL  L  A   D+++ E+ G   +      
Sbjct: 87  RMQRLATDPGAFIRSMPTRGHLGGLSQATRELVLLLDAAGYDVIIVETVGVGQSEVDIAN 146

Query: 191 LADYIIYIIDVSGGDKIP--RKGGPGITQADLLVINKTDLASAIGA-----DLAVMERDA 243
           +AD  + +     GD +   + G   I  AD+ V+NK D   A         L++   + 
Sbjct: 147 MADTFVLVTIPGTGDDLQGIKAGVMEI--ADIYVVNKADGEGATNVRIARLMLSLALEEI 204

Query: 244 LRMRDG--GPFIFAQVKHGLGVEEIVNHILQAWEASTG-----KKRR 283
            R  DG   P +      G G++E+ + I +     T      ++RR
Sbjct: 205 RRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFLTASGLLQERRR 251

In E. coli, mutation of this kinase blocks phosphorylation of two transporter system periplasmic binding proteins and consequently inhibits those transporters. This kinase is also found in Gram-positive bacteria, archaea, and the roundworm C. elegans. It may have a more general, but still unknown function. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however [Transport and binding proteins, Amino acids, peptides and amines, Regulatory functions, Protein interactions]. Length = 300

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 43/212 (20%), Positives = 71/212 (33%), Gaps = 56/212 (26%)

Query: 83  TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142
            VG+ G V  GKT L  +L                               L EER R   
Sbjct: 1   NVGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDT-----------LKEERERG-- 47

Query: 143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRE------LADYII 196
                       I+I  G +E      + + +     G     +FS+E       AD  +
Sbjct: 48  ------------ITIKTGVVEFEWPKRRINFIDTP--GH---EDFSKETVRGLAQADGAL 90

Query: 197 YIIDVSGGDK--------IPRKGGPGITQADLLVINKTDLASAIGADLAVME-RDALRMR 247
            ++D + G +        I   GG  I    ++ +NK D       D  + E ++ L++ 
Sbjct: 91  LVVDANEGVEPQTREHLNIALAGGLPI----IVAVNKIDRVGEEDFDEVLREIKELLKLI 146

Query: 248 -------DGGPFIFAQVKHGLGVEEIVNHILQ 272
                     P I      G G+EE+++ I++
Sbjct: 147 GFTFLKGKDVPIIPISALTGEGIEELLDAIVE 178

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTHEKNHGDS 32
           H+HH H H+H  H  +DHDH H+  HG  
Sbjct: 169 HEHHGHSHSHSDHD-HDHDHDHDHVHGPG 196

Length = 206

>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 15/47 (31%)

Query: 11  HAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHE 57
           + HHH HD+DHDH HE +H                H H     H   
Sbjct: 119 NMHHHDHDHDHDHDHEHHHD---------------HGHHHHHEHGAT 150

Length = 279

>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 9/33 (27%), Positives = 10/33 (30%)

Query: 3   SHDHHTHDHAHHHHHDNDHDHTHEKNHGDSTAT 35
           S         H H H + HD      H D  A 
Sbjct: 79  SLFGDHDHDHHDHDHHDHHDDHEHAGHSDFHAE 111

This bacterial family of proteins has no known function. Length = 161

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 11/83 (13%)

Query: 192 ADYIIYIIDVSGG-DKIPRKGGPGITQA-DLLVINKTDLASAIGADLAVMERDALRMRDG 249
           AD ++ ++D S G D+   +      +   ++V+NK+DL S       +         +G
Sbjct: 83  ADLVLLVVDASEGLDEEDLEILELPAKKPVIVVLNKSDLLSDAEGISEL---------NG 133

Query: 250 GPFIFAQVKHGLGVEEIVNHILQ 272
            P I    K G G++E+   +L+
Sbjct: 134 KPIIAISAKTGEGIDELKEALLE 156

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 3   SHDHHTHDHAHHHHHDNDHD 22
            HDH  H+ +   HH  +++
Sbjct: 125 DHDHAGHEKSDEDHHHGEYN 144

Length = 311

>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 3   SHDHHTHDHAHHHH---HDNDHDHTHEKNHG 30
            H  H+H H+ H H   HD+DH H     HG
Sbjct: 170 EHHGHSHSHSDHDHDHDHDHDHVHGPGCGHG 200

Length = 206

>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 15/49 (30%)

Query: 6   HHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPH 54
               D A H  H++DH+H H ++ G               H   GL PH
Sbjct: 89  KTLEDGASHGDHEHDHEHAHGEHDG---------------HEEGGLDPH 122

These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). Length = 286

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 12/83 (14%)

Query: 192 ADYIIYIIDVSGGDKI-PRKGGPGITQADLLVI-NKTDLASAIGADLAVMERDALRMRDG 249
           AD ++ ++D S        +    +    ++V+ NK DL   I           L   +G
Sbjct: 295 ADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEI----------DLEEENG 344

Query: 250 GPFIFAQVKHGLGVEEIVNHILQ 272
            P I    K G G++E+   I +
Sbjct: 345 KPVIRISAKTGEGIDELREAIKE 367

Length = 449

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 73  LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGA 132
           L  N  +R F +GI G V  GK+     L   L        V  D+ T  DG F   N  
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKV--DLVTM-DG-FHYPNAV 129

Query: 133 LPEERIRA 140
           L E  + A
Sbjct: 130 LDERGLMA 137

Length = 283

>gnl|CDD|238501 cd01019, ZnuA, Zinc binding protein ZnuA

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 2   ASHDHHTHDHAHHHHHDNDHDHTHEKNH 29
           ASH  H HDH H H   + H+      H
Sbjct: 95  ASHGDHEHDHEHAHGEHDGHEEGGLDPH 122

These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). Length = 286

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 36/186 (19%), Positives = 65/186 (34%), Gaps = 29/186 (15%)

Query: 88  GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
           G  G GK++L+ AL      +    +         D    ++     + ++  V+T G  
Sbjct: 4   GRGGVGKSSLLNALLG---GEVGEVSDVPGTTRDPD--VYVKELDKGKVKLVLVDTPG-- 56

Query: 148 HAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK 206
                 D    LG  E    L + ADL+L       + +       D  + I+     + 
Sbjct: 57  -----LDEFGGLGREELARLLLRGADLILL-----VVDSTDRESEEDAKLLILRRLRKEG 106

Query: 207 IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI 266
           IP           +LV NK DL      +  +   +  ++    P      K G GV+E+
Sbjct: 107 IPI----------ILVGNKIDLLEEREVEELLRLEELAKILG-VPVFEVSAKTGEGVDEL 155

Query: 267 VNHILQ 272
              +++
Sbjct: 156 FEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.96
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.96
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.96
COG4559	259	ABC-type hemin transport system, ATPase component	99.96
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.96
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.96
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.95
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.95
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.95
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.95
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.94
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.94
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.94
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.94
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.93
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.93
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.93
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.93
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.93
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.93
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.93
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.93
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.93
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.93
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.93
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.93
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.93
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.92
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.92
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.92
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.92
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.92
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.92
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.92
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.92
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.92
COG4987	573	CydC ABC-type transport system involved in cytochr	99.92
COG4988	559	CydD ABC-type transport system involved in cytochr	99.92
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.92
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.91
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.91
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.91
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.91
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.91
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.91
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.91
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.91
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.91
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.91
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.91
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.91
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.91
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.91
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.91
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.91
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.91
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.91
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.9
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.9
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.9
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.9
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.9
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.9
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.9
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.9
PLN03130	1622	ABC transporter C family member; Provisional	99.9
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.9
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.9
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.9
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.9
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.9
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.9
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.9
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.9
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.9
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.9
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.9
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.9
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.9
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.9
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.9
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.9
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.9
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.9
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.9
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.9
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.9
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.9
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.9
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.9
PLN03232	1495	ABC transporter C family member; Provisional	99.9
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.89
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.89
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.89
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.89
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.89
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.89
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.89
PTZ00243	1560	ABC transporter; Provisional	99.89
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.89
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.89
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.89
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.89
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.89
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.89
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.89
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.89
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.89
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.89
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.89
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.89
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.89
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.89
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.89
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.89
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.89
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.89
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.89
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.89
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.89
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.88
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.88
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.88
PRK10908	222	cell division protein FtsE; Provisional	99.88
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.88
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.88
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.88
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.88
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.88
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.88
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.88
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.88
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.88
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.88
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.88
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.88
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.88
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.88
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.88
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.88
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.88
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.88
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.88
COG1123	539	ATPase components of various ABC-type transport sy	99.88
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.88
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.88
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.88
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.88
PRK10938	490	putative molybdenum transport ATP-binding protein	99.88
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.88
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.88
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.87
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.87
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.87
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.87
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.87
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.87
COG1123	539	ATPase components of various ABC-type transport sy	99.87
COG4172	534	ABC-type uncharacterized transport system, duplica	99.87
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.87
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.87
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.87
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.87
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.87
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.87
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.87
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.87
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.87
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.87
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.87
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.87
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.87
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.87
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.87
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.87
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.87
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.87
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.87
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.87
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.87
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.87
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.87
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.87
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.87
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.87
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.87
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.87
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.87
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.86
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.86
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.86
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.86
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.86
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.86
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.86
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.86
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.86
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.86
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.86
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.86
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.86
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.86
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.86
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.86
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.86
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.86
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.86
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.86
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.86
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.86
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.86
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.86
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03246	173	ABCC_Protease_Secretion This family represents the	99.85
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.85
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.85
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.85
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.85
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.85
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.85
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.85
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.85
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.85
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.85
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.85
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.84
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.84
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.84
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.84
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.84
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.84
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.84
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.84
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.84
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.84
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.84
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.84
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.84
COG4181	228	Predicted ABC-type transport system involved in ly	99.84
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.84
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.84
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.84
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.83
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.83
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.83
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.83
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.83
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.83
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.83
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.83
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.83
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.83
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.83
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.83
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.83
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.83
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.83
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.83
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.82
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.82
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.82
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.82
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.82
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.82
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.82
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.82
PLN03211	659	ABC transporter G-25; Provisional	99.81
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.81
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.81
PRK10938	490	putative molybdenum transport ATP-binding protein	99.81
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.81
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.81
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.81
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.8
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.8
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.8
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.8
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.8
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.8
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.79
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.79
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.79
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.79
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.79
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.78
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.78
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.78
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.78
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.78
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.78
COG4172	534	ABC-type uncharacterized transport system, duplica	99.77
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.77
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.77
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.77
PLN03232	1495	ABC transporter C family member; Provisional	99.77
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.76
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.76
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.76
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.76
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.76
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.76
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.75
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.75
PLN03073	718	ABC transporter F family; Provisional	99.75
PLN03130	1622	ABC transporter C family member; Provisional	99.75
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.75
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.75
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.75
PRK11147	635	ABC transporter ATPase component; Reviewed	99.75
PRK13409	590	putative ATPase RIL; Provisional	99.74
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.74
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.74
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.73
PLN03140	1470	ABC transporter G family member; Provisional	99.72
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.72
PRK13409	590	putative ATPase RIL; Provisional	99.71
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.71
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.71
PRK11147	635	ABC transporter ATPase component; Reviewed	99.7
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.7
PLN03140	1470	ABC transporter G family member; Provisional	99.7
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.7
PLN03073	718	ABC transporter F family; Provisional	99.69
PTZ00243	1560	ABC transporter; Provisional	99.69
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.68
COG0523	323	Putative GTPases (G3E family) [General function pr	99.68
COG0488	530	Uup ATPase components of ABC transporters with dup	99.67
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.67
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.67
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.67
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.65
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.64
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.64
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	99.63
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.61
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.6
COG0488	530	Uup ATPase components of ABC transporters with dup	99.59
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	99.56
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.55
PRK11537	318	putative GTP-binding protein YjiA; Provisional	99.54
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.54
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.51
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.47
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.47
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	99.47
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.45
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.43
COG1159	298	Era GTPase [General function prediction only]	99.41
PRK15494	339	era GTPase Era; Provisional	99.4
COG1160	444	Predicted GTPases [General function prediction onl	99.39
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.39
COG4178	604	ABC-type uncharacterized transport system, permeas	99.38
cd03112	158	CobW_like The function of this protein family is u	99.37
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.36
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.34
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.3
COG1160	444	Predicted GTPases [General function prediction onl	99.28
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.28
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.28
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.27
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.26
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.21
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.2
COG0486	454	ThdF Predicted GTPase [General function prediction	99.2
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.19
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.18
PRK00089	292	era GTPase Era; Reviewed	99.17
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.17
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.15
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.15
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.15
KOG0062	582	consensus ATPase component of ABC transporters wit	99.14
PRK10416	318	signal recognition particle-docking protein FtsY;	99.14
cd00881	189	GTP_translation_factor GTP translation factor fami	99.13
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.13
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.12
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.11
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.1
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.08
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.08
PRK12298	390	obgE GTPase CgtA; Reviewed	99.08
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.08
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.07
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.05
PRK12299	335	obgE GTPase CgtA; Reviewed	99.05
cd03114	148	ArgK-like The function of this protein family is u	99.05
KOG0062	582	consensus ATPase component of ABC transporters wit	99.04
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.04
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.02
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.01
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.01
PRK12296	500	obgE GTPase CgtA; Reviewed	98.99
PRK00093	435	GTP-binding protein Der; Reviewed	98.99
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.98
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.96
PRK12297	424	obgE GTPase CgtA; Reviewed	98.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.95
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	98.95
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.95
PRK13768	253	GTPase; Provisional	98.95
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	98.94
PRK03003	472	GTP-binding protein Der; Reviewed	98.94
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.93
COG0536	369	Obg Predicted GTPase [General function prediction	98.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	98.93
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.92
COG2262	411	HflX GTPases [General function prediction only]	98.92
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.92
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.91
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.91
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.91
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.9
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.9
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.9
PRK14974	336	cell division protein FtsY; Provisional	98.9
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.9
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.89
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.89
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.89
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.89
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.89
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.89
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.88
PRK04213	201	GTP-binding protein; Provisional	98.88
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.88
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.87
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.87
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.87
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.87
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.87
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.87
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.86
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.86
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.86
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.85
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.85
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.85
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.85
COG0218	200	Predicted GTPase [General function prediction only	98.84
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.84
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.84
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.84
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.83
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.83
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.83
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.83
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.83
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.82
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.82
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.81
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.81
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.81
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.81
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.81
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.8

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2.6e-35  Score=258.54  Aligned_cols=198  Identities=27%  Similarity=0.276  Sum_probs=168.3

Q ss_pred             cccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ..+.+++|.  ..+.+++++|..+ |++++|+||||||||||||+|+|+++|. |+|.+++.++.++...++.+.++|||
T Consensus         5 ~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp   82 (258)
T COG1120           5 VENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP   82 (258)
T ss_pred             EEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence            345667766  5568899999855 9999999999999999999999999987 99999999999999999999999999


Q ss_pred             CchH--------HHHHhCCCCCCCh-----HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEE
Q 023354          135 EERI--------RAVETGGCPHAAI-----REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYII  199 (283)
Q Consensus       135 q~~~--------~~i~~~g~~~~~~-----~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~ll  199 (283)
                      |.+.        +++.+|..|+...     +++.+.+.++|+.++..+..++.+.+ ||||+||+.|||+|++ +.++++
T Consensus        83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL  162 (258)
T COG1120          83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL  162 (258)
T ss_pred             cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence            9853        6678888886532     34556788899999999999999998 9999999999999996 777777


Q ss_pred             e-CCCCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEE
Q 023354          200 D-VSGGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF  254 (283)
Q Consensus       200 D-pt~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~  254 (283)
                      | ||+.+|+..             +.+.+           .+|||+++++|.|++.+.|++.+++....++..|+.++..
T Consensus       163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~~~~  242 (258)
T COG1120         163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVDADV  242 (258)
T ss_pred             CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCceEE
Confidence            7 999876532             21222           3899999999999999999999999999999999988655


Q ss_pred             EE
Q 023354          255 AQ  256 (283)
Q Consensus       255 is  256 (283)
                      +.
T Consensus       243 ~~  244 (258)
T COG1120         243 IE  244 (258)
T ss_pred             EE
Confidence            44

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=3.4e-29  Score=211.61  Aligned_cols=172  Identities=20%  Similarity=0.170  Sum_probs=132.4

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC-CHHHHHHhccccCCchHHH-----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERIRA-----  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~~~-----  140 (283)
                      ..+|+++++.. +|++++|+||+||||||||++|.++..++ |+|.+++.++... +...+|+++|+|||....+     
T Consensus        15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTv   94 (240)
T COG1126          15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTV   94 (240)
T ss_pred             eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchH
Confidence            34788999985 59999999999999999999999999988 9999999776533 4567889999999985421     


Q ss_pred             ---HHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc-----
Q 023354          141 ---VETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI-----  207 (283)
Q Consensus       141 ---i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l-----  207 (283)
                         +..+-.  ......+....+.+.|+.+++.+..+.+... ||||+||++|||+|+ +|.++|+| ||+.+|.     
T Consensus        95 leNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~E  174 (240)
T COG1126          95 LENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGE  174 (240)
T ss_pred             HHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHH
Confidence               111100  0001123334667889999999988888877 999999999999998 69999988 9998653     


Q ss_pred             --------hhhcCCcc----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          208 --------PRKGGPGI----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       208 --------~~~~~~~i----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                              ..+..+++          +.||+|+++..|.++++|++.+.+.
T Consensus       175 VL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~  225 (240)
T COG1126         175 VLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD  225 (240)
T ss_pred             HHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence                    22222221          6799999999999999998887775

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.4e-29  Score=218.99  Aligned_cols=188  Identities=20%  Similarity=0.246  Sum_probs=145.4

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+..+.|...  +++.+++|.. +|++++|+||||||||||+|+|+|+++|. |+|.+.+.+......   +.+|||
T Consensus         5 i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY   79 (254)
T COG1121           5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY   79 (254)
T ss_pred             EEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence            4555666666655  5999999974 59999999999999999999999999997 999999887654322   357999


Q ss_pred             cCCchH----------HHHHhCCCCCCC-----hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-Cc
Q 023354          133 LPEERI----------RAVETGGCPHAA-----IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YI  195 (283)
Q Consensus       133 v~q~~~----------~~i~~~g~~~~~-----~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~  195 (283)
                      |||...          +++.++.+....     ...+.+.+.++|+.++..+..++.+.+ ||||+||+.|||||+. |.
T Consensus        80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~  159 (254)
T COG1121          80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPD  159 (254)
T ss_pred             cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCC
Confidence            999642          456666444431     234556788999999999999999999 9999999999999995 88


Q ss_pred             EEEEe-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC
Q 023354          196 IYIID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDG  249 (283)
Q Consensus       196 l~llD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~  249 (283)
                      ++|+| |++|.|..             .+ +.+           ..++|+|++++...+ +.|++.+++........++
T Consensus       160 lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~~~-~~G~~~~~~~~~~l~~~~g  236 (254)
T COG1121         160 LLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLI-ASGPPEEVLTEENLEKAFG  236 (254)
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCeeE-eccChhhccCHHHHHHHhC
Confidence            88888 99986532             22 222           278999999987655 5688988888655554444

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.96  E-value=9.8e-29  Score=213.19  Aligned_cols=179  Identities=20%  Similarity=0.182  Sum_probs=142.3

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +.+.+++..|.  ...++++++|+.. |++++++||+||||||+||+|.+++.|+ |+|.+++.++...+..++|++|||
T Consensus         2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY   79 (309)
T COG1125           2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY   79 (309)
T ss_pred             ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence            34566776666  4568889999865 9999999999999999999999999998 999999999999999999999999


Q ss_pred             cCCchHHHHHhCCCCCCChHH--------------HH-HHHHHHHHHcccc--ccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          133 LPEERIRAVETGGCPHAAIRE--------------DI-SINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       133 v~q~~~~~i~~~g~~~~~~~~--------------~~-~~~~~~l~~l~~~--~~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      |-|..      +.+|+.++.+              .. .++.+.|+.+++.  ...+++..| ||||+||+.+||||+ +
T Consensus        80 viQqi------gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAad  153 (309)
T COG1125          80 VIQQI------GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAAD  153 (309)
T ss_pred             hhhhc------ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcC
Confidence            98753      3344433322              22 2455667777664  367888888 999999999999998 6


Q ss_pred             CcEEEEe-CCCCCC-------------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          194 YIIYIID-VSGGDK-------------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       194 ~~l~llD-pt~g~~-------------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |.|+|+| |.+..|             ++++.+.+           +..+|+|++++.|++...++|.+.+..
T Consensus       154 P~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~  226 (309)
T COG1125         154 PPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN  226 (309)
T ss_pred             CCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence            8888888 887643             23333333           378999999999999999998887764

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.7e-28  Score=206.60  Aligned_cols=187  Identities=21%  Similarity=0.195  Sum_probs=152.8

Q ss_pred             CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (283)
Q Consensus        68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (283)
                      .+..+++++|.-+ ||+++|+||||||||||||.|+|.+.|+ |++.+.+.++.++.+.++.+..+++||+..       
T Consensus        13 Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv   92 (259)
T COG4559          13 GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTV   92 (259)
T ss_pred             cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEH
Confidence            3456788888865 9999999999999999999999999988 999999999999999999999999999863       


Q ss_pred             -HHHHhCCCCCCCh---HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-------CcEEEEe-CCCCC
Q 023354          139 -RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-------YIIYIID-VSGGD  205 (283)
Q Consensus       139 -~~i~~~g~~~~~~---~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-------~~l~llD-pt~g~  205 (283)
                       +++.+|..++..-   .++.+.....|..........+.+.+ |||++||+.+||.|++       +.++++| ||+..
T Consensus        93 ~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaL  172 (259)
T COG4559          93 QEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSAL  172 (259)
T ss_pred             HHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcccc
Confidence             6778888888542   24444456677777777766776666 9999999999999984       3356666 99988


Q ss_pred             Cchhhc-----------------------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEE
Q 023354          206 KIPRKG-----------------------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF  254 (283)
Q Consensus       206 ~l~~~~-----------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~  254 (283)
                      |+..+.                       +....|||+|++++.|++++.|++.+++..+.++..|+.++..
T Consensus       173 Di~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg~~~~V  244 (259)
T COG4559         173 DIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYGADIRV  244 (259)
T ss_pred             chHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhCCceee
Confidence            764321                       0113899999999999999999999999999999999887654

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.96  E-value=1.1e-28  Score=244.72  Aligned_cols=197  Identities=18%  Similarity=0.150  Sum_probs=159.3

Q ss_pred             ccCCCCCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC
Q 023354           45 YHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE  122 (283)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~  122 (283)
                      .......+|.+.+.+++|.|..+..+.+++.++..+ |++|+|+|++|||||||+|+|+|+++|+ |+|.+++.|+...+
T Consensus       462 ~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~  541 (709)
T COG2274         462 LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID  541 (709)
T ss_pred             cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcC
Confidence            456667789999999999999998899999999966 9999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHhccccCCchH------HHHHhCCCCCCChHHHHH-HHHHHHHHcc--ccccCCCcccC-----CchHHHHHHHH
Q 023354          123 DGEFLMRNGALPEERI------RAVETGGCPHAAIREDIS-INLGPLEELS--NLFKADLLLCE-----SGGDNLAANFS  188 (283)
Q Consensus       123 ~~~~~~~ig~v~q~~~------~~i~~~g~~~~~~~~~~~-~~~~~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia  188 (283)
                      ...+|+.+|||+|++.      ..+...+.|..+..+..+ .....+.++.  ...+++.++.|     |||||||++||
T Consensus       542 ~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalA  621 (709)
T COG2274         542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA  621 (709)
T ss_pred             HHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHH
Confidence            9999999999999975      223344555555443333 2222333332  34588999988     99999999999


Q ss_pred             HHhc-CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          189 RELA-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       189 ~al~-~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |++. +|.|+++| ||+..|...+.                     ..+++.||+|++++.|+++++|+..+.+..
T Consensus       622 RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         622 RALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence            9998 58888888 88886532210                     123589999999999999999999887764

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.2e-28  Score=217.95  Aligned_cols=185  Identities=18%  Similarity=0.086  Sum_probs=143.8

Q ss_pred             ccccCCCCCCCCC---CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHH
Q 023354           56 HEPIYSPGYFSRR---APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFL  127 (283)
Q Consensus        56 ~~~~~~~~~~~~~---~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~  127 (283)
                      .+..++..|+...   ..+++++++..+ |+++||+|++|||||||++++.++.+|+ |+|.+++.++..++.   .++|
T Consensus         3 ~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R   82 (339)
T COG1135           3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLR   82 (339)
T ss_pred             EEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHH
Confidence            3444554555422   357899999865 9999999999999999999999999998 999999999887764   4567


Q ss_pred             HhccccCCchHH--------HHHhCCCCCCChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          128 MRNGALPEERIR--------AVETGGCPHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       128 ~~ig~v~q~~~~--------~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      ++||++||.+..        .+.++.......+ +...++.+.|+.+++.+..+.+..+ ||||||||+|||||+ +|.|
T Consensus        83 ~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i  162 (339)
T COG1135          83 QKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI  162 (339)
T ss_pred             hhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE
Confidence            889999998742        2222221111223 3344788899999999988888888 999999999999999 5999


Q ss_pred             EEEe-CCCCCCc-------------hhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          197 YIID-VSGGDKI-------------PRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       197 ~llD-pt~g~~l-------------~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|.| ||+.+|.             +++.+.++           +.||+|.++..|++++.|+..++|.
T Consensus       163 LL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~  231 (339)
T COG1135         163 LLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA  231 (339)
T ss_pred             EEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence            9988 8887653             33444432           7899999999999999999888875

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3e-28  Score=235.53  Aligned_cols=192  Identities=18%  Similarity=0.183  Sum_probs=153.9

Q ss_pred             CCCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH
Q 023354           50 GLAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF  126 (283)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~  126 (283)
                      ...|.+.|.+++|.||.++. +.+++.+|+.+ |++|+|+||+|+||||+.++|..+|.|+ |+|.+++.|+.+++...+
T Consensus       461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l  540 (716)
T KOG0058|consen  461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL  540 (716)
T ss_pred             cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence            57899999999999999976 57899999966 9999999999999999999999999998 999999999999999999


Q ss_pred             HHhccccCCchH------HHHHhCCCCCCChHHHHHH-HHHHHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354          127 LMRNGALPEERI------RAVETGGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA  192 (283)
Q Consensus       127 ~~~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~-~~~~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~  192 (283)
                      ++.||+|.|+|.      ..+...|++..+..+.... ......+|  ...++++..++|     |||||||++|||||.
T Consensus       541 r~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  541 RRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             HHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence            999999999985      2233445665443332211 11122223  234678999998     999999999999999


Q ss_pred             -CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          193 -DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                       +|.|+++| +|+.+|-..++                     ..+++.||+|++++.|++.+.|+..+.+..
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~  692 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK  692 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence             59888888 88875422111                     123589999999999999999988887764

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.8e-28  Score=208.48  Aligned_cols=194  Identities=20%  Similarity=0.145  Sum_probs=147.3

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHh
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMR  129 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~  129 (283)
                      +...+++..|| ....++.+++|..+ ||+|+|+|++||||||||++|.|+..|+ |+|.+.+.++.....   .++++.
T Consensus         4 i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~   82 (258)
T COG3638           4 IEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD   82 (258)
T ss_pred             EEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence            45566677777 55678999999865 9999999999999999999999999998 999999988887654   456778


Q ss_pred             ccccCCchH--------HHHHhCCCCCCC---------hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHh
Q 023354          130 NGALPEERI--------RAVETGGCPHAA---------IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       130 ig~v~q~~~--------~~i~~~g~~~~~---------~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +||+||.+.        +.+..|...+..         .+++...++++|+.++..+..-..... ||||+|||+|||+|
T Consensus        83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL  162 (258)
T COG3638          83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL  162 (258)
T ss_pred             ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence            999999874        233344333321         245556778899998877655444444 99999999999999


Q ss_pred             cC-CcEEEEe-CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHh
Q 023354          192 AD-YIIYIID-VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALR  245 (283)
Q Consensus       192 ~~-~~l~llD-pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~  245 (283)
                      ++ |.|+|-| |++.+|.             .++.+.+           .+||+||+-+|.|+++++|++.+ +.+....
T Consensus       163 ~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e-l~~~~~~  241 (258)
T COG3638         163 VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE-LTDEALD  241 (258)
T ss_pred             hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh-hhHHHHH
Confidence            96 8888887 8877543             2222222           28999999999999999999877 4555555


Q ss_pred             hcCCC
Q 023354          246 MRDGG  250 (283)
Q Consensus       246 ~~~~~  250 (283)
                      ..|+.
T Consensus       242 ~iYg~  246 (258)
T COG3638         242 EIYGN  246 (258)
T ss_pred             HHhcc
Confidence            55554

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=6e-28  Score=211.06  Aligned_cols=187  Identities=20%  Similarity=0.128  Sum_probs=148.0

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC-CCHHHHHHhc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-KEDGEFLMRN  130 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~-~~~~~~~~~i  130 (283)
                      .+.+..+++.|++. .+++.+++|..+ |+.++|+|+||||||||+++|+|+++|+ |.|.+.+.++.. ....++++++
T Consensus         3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v   81 (235)
T COG1122           3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV   81 (235)
T ss_pred             eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence            34556777788777 788999999865 9999999999999999999999999998 999888888763 5677889999


Q ss_pred             cccCCchHH---------HHHhCCCCCCChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354          131 GALPEERIR---------AVETGGCPHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       131 g~v~q~~~~---------~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l  198 (283)
                      |+|+|++..         .+.++........ +...++.+.|+.++.....++.+.+ ||||+||++||.+|+ +|.+++
T Consensus        82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili  161 (235)
T COG1122          82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL  161 (235)
T ss_pred             EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence            999999852         2334433332223 3334677889999888888887777 999999999999998 688888


Q ss_pred             Ee-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          199 ID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       199 lD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      +| ||++.|..             .+.+.+           ..+||++++++.|+++.+|++.+++..
T Consensus       162 LDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         162 LDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            88 99986532             221222           278999999999999999998887764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.95  E-value=9.5e-28  Score=218.28  Aligned_cols=170  Identities=15%  Similarity=0.139  Sum_probs=135.3

Q ss_pred             CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HH
Q 023354           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (283)
Q Consensus        71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~  140 (283)
                      +++++++..+ |++++|+||+|||||||||+|+|+..|+ |+|.+.+.++...++.+  |.+++|||+..        +.
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~N   95 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYEN   95 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHH
Confidence            8889999865 9999999999999999999999999998 99999999999888765  78999999853        12


Q ss_pred             HHhCCCCCCChHHH-HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc---------
Q 023354          141 VETGGCPHAAIRED-ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI---------  207 (283)
Q Consensus       141 i~~~g~~~~~~~~~-~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l---------  207 (283)
                      +.++.......++. ..++.+.++.+.+.+..++.+.+ ||||+||+++|||++ +|.++|+| |.+.+|.         
T Consensus        96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~e  175 (338)
T COG3839          96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSE  175 (338)
T ss_pred             hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHH
Confidence            22222211112223 23667788888888899998888 999999999999999 59999999 8886432         


Q ss_pred             ----hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHH
Q 023354          208 ----PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       208 ----~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                          .++.+.+           +..||+|++++.|.+.+.|++.+++.+.
T Consensus       176 i~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P  225 (338)
T COG3839         176 IKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP  225 (338)
T ss_pred             HHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence                2222322           3789999999999999999999988754

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=4.3e-27  Score=215.08  Aligned_cols=183  Identities=17%  Similarity=0.120  Sum_probs=141.9

Q ss_pred             ccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      .+.++.-.|-  ...+++++++..+ |++++|+||+||||||||++|+|+..|+ |+|.+.+.++...++.  .|.+|+|
T Consensus         7 ~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~V   82 (352)
T COG3842           7 EIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMV   82 (352)
T ss_pred             EEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccccee
Confidence            3344444443  5568899999865 9999999999999999999999999998 9999999999887765  4789999


Q ss_pred             CCchH--------HHHHhCCCCCCC-hHH-HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          134 PEERI--------RAVETGGCPHAA-IRE-DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       134 ~q~~~--------~~i~~~g~~~~~-~~~-~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      ||+..        +.+.+|...... .++ ...++.+.|+.+.+....++.+.+ ||||+||+++||||+ +|.|+|+| 
T Consensus        83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE  162 (352)
T COG3842          83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE  162 (352)
T ss_pred             ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence            99842        334444431111 112 234677888888888888888888 999999999999999 58888888 


Q ss_pred             CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHH
Q 023354          201 VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       201 pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                      |.+.+|.             +++.+.+           +.++|+|++|+.|++...|++.+.+...
T Consensus       163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P  228 (352)
T COG3842         163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP  228 (352)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence            8887542             2222222           3789999999999999999999988743

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=6.9e-27  Score=194.90  Aligned_cols=187  Identities=19%  Similarity=0.157  Sum_probs=155.7

Q ss_pred             CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH------
Q 023354           67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (283)
Q Consensus        67 ~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------  138 (283)
                      ..+..+.++++..+ |.+++|+|||||||||||.+++++++.+ |+|.+++.++..++..++.+++.++-|+..      
T Consensus        12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT   91 (252)
T COG4604          12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT   91 (252)
T ss_pred             CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence            34567888888755 9999999999999999999999999987 999999999999999999999999988753      


Q ss_pred             --HHHHhCCCCCCCh---HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchh-
Q 023354          139 --RAVETGGCPHAAI---REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPR-  209 (283)
Q Consensus       139 --~~i~~~g~~~~~~---~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~-  209 (283)
                        +.+.+|.+|+..-   .++...+.++++.+.+....|+.+-| ||||+||+.+|+.+++ .-.+++| |.+.+|... 
T Consensus        92 V~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHs  171 (252)
T COG4604          92 VRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS  171 (252)
T ss_pred             HHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHH
Confidence              4567899988642   45556777889999888888998888 9999999999999995 4455555 998866432 


Q ss_pred             ------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeE
Q 023354          210 ------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFI  253 (283)
Q Consensus       210 ------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~  253 (283)
                                  +.+.++           .|+|.||.+|.|+++..|++.+++...+++..|..++-
T Consensus       172 v~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiydm~i~  238 (252)
T COG4604         172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYDMDIP  238 (252)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHhcCCce
Confidence                        222221           78999999999999999999999999999999887753

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.94  E-value=1.9e-26  Score=192.30  Aligned_cols=183  Identities=51%  Similarity=0.814  Sum_probs=159.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhC-CCCCCChHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG-GCPHAAIREDISINLG  160 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~-g~~~~~~~~~~~~~~~  160 (283)
                      ..++++||+|||||||+..++..++...++.++.+|+.+..|+++.++.   +..+...+.+| +| +    ++...+..
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~---~g~~i~~v~TG~~C-H----~da~m~~~   85 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL---PGEPIIGVETGKGC-H----LDASMNLE   85 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhC---CCCeeEEeccCCcc-C----CcHHHHHH
Confidence            5899999999999999999999988778999999999987777766652   44455667888 77 4    34556677


Q ss_pred             HHHHcccccc-CCCcccCCchHHHHHHHHHHhcC-CcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHH
Q 023354          161 PLEELSNLFK-ADLLLCESGGDNLAANFSRELAD-YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       161 ~l~~l~~~~~-~d~~i~eSgGq~q~~~ia~al~~-~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      +++++..... .|.+++||+| +....++..|.+ ..|+|+|.+.|++++++.++.+..||.+||||.|++.+.|...++
T Consensus        86 ai~~l~~~~~~~Dll~iEs~G-NL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v~~dlev  164 (202)
T COG0378          86 AIEELVLDFPDLDLLFIESVG-NLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYVGADLEV  164 (202)
T ss_pred             HHHHHhhcCCcCCEEEEecCc-ceecccCcchhhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHhCccHHH
Confidence            8888766554 7999999999 888888888987 899999999999999996666666999999999999999999999


Q ss_pred             HhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          239 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       239 ~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      |.+.+++.+|..|++++|+++|+|+++|++|+...
T Consensus       165 m~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         165 MARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             HHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            99999999999999999999999999999998754

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=4e-26  Score=231.75  Aligned_cols=195  Identities=18%  Similarity=0.152  Sum_probs=153.8

Q ss_pred             CCCCCCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH
Q 023354           47 SHDGLAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED  123 (283)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~  123 (283)
                      ......|.++++++.|.||.+.+ ..+++.+|..+ |++++|+||+||||||++++|.++|.|+ |+|.+++.|+...+.
T Consensus       343 ~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~  422 (1228)
T KOG0055|consen  343 VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL  422 (1228)
T ss_pred             cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch
Confidence            44456899999999999999986 57888999866 9999999999999999999999999998 999999999999999


Q ss_pred             HHHHHhccccCCchHHH------HHhCCCCCCChHHHHHHH-HHHHHHc--cccccCCCcccC-----CchHHHHHHHHH
Q 023354          124 GEFLMRNGALPEERIRA------VETGGCPHAAIREDISIN-LGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSR  189 (283)
Q Consensus       124 ~~~~~~ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~-~~~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~  189 (283)
                      ..+|.+||+|.|+|..+      +..-|.+..+..+..+.. ......+  .+..+++..++|     |||||||++|||
T Consensus       423 ~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIAR  502 (1228)
T KOG0055|consen  423 KWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIAR  502 (1228)
T ss_pred             HHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHH
Confidence            99999999999998533      223345554433222111 0111222  235578888887     999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchhhc------------C---------CcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          190 ELA-DYIIYIID-VSGGDKIPRKG------------G---------PGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~~~------------~---------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      +|+ +|.|+|+| ||+++|...+.            .         .+++.||+|++++.|++++.|+..|++..
T Consensus       503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~  577 (1228)
T KOG0055|consen  503 ALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL  577 (1228)
T ss_pred             HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence            999 59999988 99987643221            1         23588999999999999999999888753

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.93  E-value=3.8e-26  Score=214.42  Aligned_cols=191  Identities=22%  Similarity=0.252  Sum_probs=144.4

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      ...+..+.|..  ...+++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++......++++.+||+
T Consensus         5 ~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v   82 (402)
T PRK09536          5 DVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV   82 (402)
T ss_pred             EEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence            34455556643  45789999985 59999999999999999999999999987 9999999998877777888899999


Q ss_pred             CCchH--------HHHHhCCCCCC---C--hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEE
Q 023354          134 PEERI--------RAVETGGCPHA---A--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYI  198 (283)
Q Consensus       134 ~q~~~--------~~i~~~g~~~~---~--~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~l  198 (283)
                      +|++.        +.+.++..++.   .  ...+...+.+.++.++.....++.+.+ |+||+||+.|||+|++ |.+++
T Consensus        83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL  162 (402)
T PRK09536         83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL  162 (402)
T ss_pred             ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99753        23334433221   0  123334566788888877777888877 9999999999999995 88888


Q ss_pred             Ee-CCCCCCchhh------------cCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcC
Q 023354          199 ID-VSGGDKIPRK------------GGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRD  248 (283)
Q Consensus       199 lD-pt~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~  248 (283)
                      +| |++++|...+            .+.+           .++||++++++.|++.+.|++.+++........+
T Consensus       163 LDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~~~  236 (402)
T PRK09536        163 LDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAF  236 (402)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHHHh
Confidence            88 9999764311            1222           1689999999999999999988877654433333

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=6.9e-26  Score=200.22  Aligned_cols=171  Identities=16%  Similarity=0.119  Sum_probs=127.2

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee---cCCCCCHHHHHHhccccCCchH-----
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTKEDGEFLMRNGALPEERI-----  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~---d~~~~~~~~~~~~ig~v~q~~~-----  138 (283)
                      .++++++++..+ |+.++|+|||||||||||++|+|+..|+ |.|.+.+.   |....  ....++||||+|+..     
T Consensus        15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R~VGfvFQ~YALF~Hm   92 (345)
T COG1118          15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDRKVGFVFQHYALFPHM   92 (345)
T ss_pred             ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhcceeEEEechhhcccc
Confidence            356778888866 9999999999999999999999999998 99999998   54442  233478999999864     


Q ss_pred             ---HHHHhCCCCC-CC--hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-
Q 023354          139 ---RAVETGGCPH-AA--IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-  208 (283)
Q Consensus       139 ---~~i~~~g~~~-~~--~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-  208 (283)
                         ..+.+|.... +.  ..+....+.+.|..+.+....++.+.. ||||+||+++||+|+ .|.++|+| |.+..|-+ 
T Consensus        93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~v  172 (345)
T COG1118          93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV  172 (345)
T ss_pred             hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHH
Confidence               2344443111 11  112223555667777666666666666 999999999999998 68888888 87765421 


Q ss_pred             ------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          209 ------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       209 ------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                                  .+.+.+           ++.||+|++++.|+|...|++.+++..
T Consensus       173 r~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~  228 (345)
T COG1118         173 RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH  228 (345)
T ss_pred             HHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence                        121211           388999999999999999999888764

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.93  E-value=5.8e-26  Score=194.73  Aligned_cols=186  Identities=22%  Similarity=0.189  Sum_probs=140.7

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHH
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFL  127 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~  127 (283)
                      ..+....+++.|  .....+++++|.. +|++++|+||+|||||||||.|.|+++|+ |+|.+++.++...+..   +++
T Consensus         7 ~~I~vr~v~~~f--G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           7 PLIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             ceEEEeeeeeec--CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            345555666554  2345788999985 59999999999999999999999999998 9999999999876543   567


Q ss_pred             HhccccCCchH--------HHHHhCCCCCCChH-HHH-HHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CC
Q 023354          128 MRNGALPEERI--------RAVETGGCPHAAIR-EDI-SINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       128 ~~ig~v~q~~~--------~~i~~~g~~~~~~~-~~~-~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      +++|++||...        +.+.+.-..+.... ..+ +.+...|+.+++... .++...| ||||++|+++|||++ +|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP  164 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP  164 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence            88999999753        22222222222222 222 245567788887776 7888888 999999999999998 78


Q ss_pred             cEEEEe-CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .|+++| ||+|+|.             +...+.+           ...||+++++..+++.+.|++.+...
T Consensus       165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence            888888 9999753             2222222           37899999999999999999887765

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=8.2e-26  Score=194.95  Aligned_cols=162  Identities=19%  Similarity=0.124  Sum_probs=117.3

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---H-HHhccccCCchH----
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-LMRNGALPEERI----  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~-~~~ig~v~q~~~----  138 (283)
                      ..++++++|..+ |++++|+||+||||||||++|.|+.+|+ |.+.+.+.++...+..+   + ++.+|||||+..    
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            468899999855 9999999999999999999999999998 99999999998776433   3 456999999853    


Q ss_pred             ----HHHHhCCCCCCChH-HHHHHHHHHHHHccccccCC-CcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCch-
Q 023354          139 ----RAVETGGCPHAAIR-EDISINLGPLEELSNLFKAD-LLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIP-  208 (283)
Q Consensus       139 ----~~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d-~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~-  208 (283)
                          +.+.++........ .........++.+++.+... ..+.+ ||||+||++||||++. |.+++.| ||...|.. 
T Consensus        98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t  177 (226)
T COG1136          98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT  177 (226)
T ss_pred             CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence                33332211111111 12234445666667765544 66767 9999999999999994 8888888 88765422 


Q ss_pred             ------------hhcCCc----------ccccCEEEEEcCCccc
Q 023354          209 ------------RKGGPG----------ITQADLLVINKTDLAS  230 (283)
Q Consensus       209 ------------~~~~~~----------i~~ad~ivi~K~g~i~  230 (283)
                                  ++.+.+          ..+||+++.++.|++.
T Consensus       178 ~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE  221 (226)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence                        222322          2789999999999843

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.93  E-value=7.9e-26  Score=204.64  Aligned_cols=171  Identities=22%  Similarity=0.211  Sum_probs=130.2

Q ss_pred             CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (283)
Q Consensus        68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (283)
                      ...++++++|..+ |+++||+||||||||||||+|+|+++|+ |+|.+.+.++... ..+.++++||+||++.       
T Consensus        17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~   95 (293)
T COG1131          17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTV   95 (293)
T ss_pred             CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccH
Confidence            4568999999965 9999999999999999999999999998 9999999888754 5677889999999874       


Q ss_pred             -HHHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-----
Q 023354          139 -RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-----  208 (283)
Q Consensus       139 -~~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-----  208 (283)
                       +.+.+.. +...........+.+.++.+++....+..+.. |+||+||+.||.+|+ +|.++++| ||+|.|..     
T Consensus        96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~  175 (293)
T COG1131          96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI  175 (293)
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence             2222211 11111112233566788888877645666666 999999999999998 58888888 99997642     


Q ss_pred             --------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          209 --------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       209 --------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                              .+.+.++           ..||+|++++.|++++.|+..+..
T Consensus       176 ~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~  225 (293)
T COG1131         176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK  225 (293)
T ss_pred             HHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence                    1121222           569999999999999999766533

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.93  E-value=4.1e-26  Score=190.85  Aligned_cols=175  Identities=18%  Similarity=0.148  Sum_probs=129.6

Q ss_pred             CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-----
Q 023354           67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-----  139 (283)
Q Consensus        67 ~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-----  139 (283)
                      +...++.+++|..+ |++++|+|+|||||||+|++|++++.|+ |.|.+++.|... .+...++.||+++.+.-.     
T Consensus        13 ~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~~e~glY~RlT   91 (245)
T COG4555          13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGERGLYARLT   91 (245)
T ss_pred             CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceecCCcChhhhhh
Confidence            35558889999855 9999999999999999999999999998 999999998765 455678899999854321     


Q ss_pred             ---HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchhh--
Q 023354          140 ---AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPRK--  210 (283)
Q Consensus       140 ---~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~~--  210 (283)
                         .+.+-+..+ ....+...++.+..+.|.+....|+.+.+ |.|++|++.||||+++ |.++++| |++|.|+...  
T Consensus        92 ~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~  171 (245)
T COG4555          92 ARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK  171 (245)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHH
Confidence               111111111 11111122344455667777788888888 9999999999999995 9898888 9999875321  


Q ss_pred             --------c--CCc----------c-cccCEEEEEcCCcccccCChHHHHhHH
Q 023354          211 --------G--GPG----------I-TQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       211 --------~--~~~----------i-~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                              .  +..          + ..||+|++++.|.++..|+..+...+.
T Consensus       172 ~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~  224 (245)
T COG4555         172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART  224 (245)
T ss_pred             HHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence                    0  111          1 589999999999999999887766543

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.93  E-value=5.4e-26  Score=209.67  Aligned_cols=184  Identities=16%  Similarity=0.092  Sum_probs=135.1

Q ss_pred             cccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HHHh
Q 023354           57 EPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMR  129 (283)
Q Consensus        57 ~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~~~  129 (283)
                      +.+++..|...  ...++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+   .++.
T Consensus         4 ~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~   83 (343)
T TIGR02314         4 LSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ   83 (343)
T ss_pred             EEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcC
Confidence            34444455422  235799999985 59999999999999999999999999998 99999999987665543   4668


Q ss_pred             ccccCCchH--------HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354          130 NGALPEERI--------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       130 ig~v~q~~~--------~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l  198 (283)
                      +||+||++.        +.+.++.. ......+....+.+.++.+++.+..+..+.+ ||||+||++|||+|+ +|.++|
T Consensus        84 Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLL  163 (343)
T TIGR02314        84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL  163 (343)
T ss_pred             EEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            999999853        11222111 1111122233556778888887777888877 999999999999999 588888


Q ss_pred             Ee-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          199 ID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       199 lD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +| |+++.|..             ++.+.++           ++||+|++++.|++.+.|+..+++.
T Consensus       164 lDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       164 CDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            88 99986532             1112221           6799999999999999888777653

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=6.8e-26  Score=212.94  Aligned_cols=193  Identities=17%  Similarity=0.183  Sum_probs=150.2

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHH
Q 023354           47 SHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE  125 (283)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~  125 (283)
                      ......+.+.+.++++.|.+ .++.+++++|+.+ |++|||+|+|||||||+||+|.+.+..+|+|.++|.++...+...
T Consensus       344 ~i~~~~~~I~F~dV~f~y~~-k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~S  422 (591)
T KOG0057|consen  344 PIELFGGSIEFDDVHFSYGP-KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLES  422 (591)
T ss_pred             CcccCCCcEEEEeeEEEeCC-CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHH
Confidence            33345566999999999874 3358899999965 999999999999999999999999997799999999999999999


Q ss_pred             HHHhccccCCchHHHHH------hCCCCCCChHHHHHHHH-HHHHHcc--ccccCCCcccC-----CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERIRAVE------TGGCPHAAIREDISINL-GPLEELS--NLFKADLLLCE-----SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~~~i~------~~g~~~~~~~~~~~~~~-~~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al  191 (283)
                      +|+.||||||+...+.+      ..||+..+..+-.+.+. ..+.+.-  ..++++..++|     ||||+||+++||++
T Consensus       423 lR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~  502 (591)
T KOG0057|consen  423 LRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF  502 (591)
T ss_pred             hhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence            99999999999764433      45777776544333211 1222221  23477888888     99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhhc-----------C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354          192 A-DYIIYIID-VSGGDKIPRKG-----------G----------PGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~~-----------~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      + ++.|+++| ||+..|-..+.           .          .++..||.|++++.|.+.+.|+..+.+.
T Consensus       503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence            8 67777777 88876532211           1          1247899999999999999999988876

>TIGR00101 ureG urease accessory protein UreG

Probab=99.93  E-value=2.1e-25  Score=191.10  Aligned_cols=193  Identities=58%  Similarity=0.957  Sum_probs=155.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP  161 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~  161 (283)
                      ..++|+||+|||||||++.+++.+.+...+.+..+++....+.++....++++|+....+.+++|+||..+.+.......
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   81 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA   81 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence            47999999999999999999998877766888889988777788888889988877655668999999887766555666


Q ss_pred             HHHccc-cccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHHHh
Q 023354          162 LEELSN-LFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       162 l~~l~~-~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |..+.. ....|.+++||.|..+...+...+++..|+++|++.+++++.+...++..||++++||.|+..+.+...+.+.
T Consensus        82 L~~l~~~~~~~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~  161 (199)
T TIGR00101        82 VAEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMVGADLGVME  161 (199)
T ss_pred             HHHHHhcCCCCCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccccccHHHHH
Confidence            666532 3468999999888433333334456789999999998877665556889999999999999865456677777


Q ss_pred             HHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          241 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       241 ~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      +.+...++.++++++|+++|+|+++|++++.+.+
T Consensus       162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            8888889999999999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=2e-25  Score=226.63  Aligned_cols=191  Identities=19%  Similarity=0.194  Sum_probs=152.2

Q ss_pred             CCCCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH
Q 023354           49 DGLAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE  125 (283)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~  125 (283)
                      +...|.+.+.++.|.||.++. +.+++.++..+ |+.++|+||+||||||++.+|-+.|.|+ |.|.+++.|+..++..-
T Consensus       982 ~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen  982 PNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred             ccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHH
Confidence            345788999999999998886 47899999966 9999999999999999999999999998 99999999999999999


Q ss_pred             HHHhccccCCchHHH-------HHhCCCCCCChHHHHHH-HHHHHHHc--cccccCCCcccC-----CchHHHHHHHHHH
Q 023354          126 FLMRNGALPEERIRA-------VETGGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSRE  190 (283)
Q Consensus       126 ~~~~ig~v~q~~~~~-------i~~~g~~~~~~~~~~~~-~~~~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~a  190 (283)
                      +|+++|.|.|+|..+       +.+| ....+..+..+. .......|  .+..++|..++|     |||||||++||||
T Consensus      1062 LR~~i~lVsQEP~LF~~TIrENI~YG-~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFNGTIRENIAYG-SEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred             HHHhcceeccCchhhcccHHHHHhcc-CCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence            999999999999633       3344 222232222211 11122233  346789999998     9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.|+||| +|+.+|...+.                     ..+++.||.|++++.|++++.|+..+++.
T Consensus      1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred             HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence            98 69999999 88876532211                     12468999999999999999999988775

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.93  E-value=2.1e-25  Score=185.05  Aligned_cols=151  Identities=17%  Similarity=0.110  Sum_probs=121.1

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHh
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMR  129 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~  129 (283)
                      +.|.+++-.|+.. .++|++++|..+ |+++-|+||+|||||||||+|++..+|+ |+|.+.+.++.....   .-+|++
T Consensus         2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence            5678888889988 779999999865 9999999999999999999999999998 999999999987654   357889


Q ss_pred             ccccCCchH--------HHHHhCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEE
Q 023354          130 NGALPEERI--------RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYI  198 (283)
Q Consensus       130 ig~v~q~~~--------~~i~~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~l  198 (283)
                      ||+|||+.-        +.+.++....... .+....+.+.|+.+++.+.......+ |||++||++||||+++ |.+++
T Consensus        81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl  160 (223)
T COG2884          81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL  160 (223)
T ss_pred             eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence            999999852        2232222111111 22334677889999998888777777 9999999999999996 88999


Q ss_pred             Ee-CCCCCC
Q 023354          199 ID-VSGGDK  206 (283)
Q Consensus       199 lD-pt~g~~  206 (283)
                      -| ||...|
T Consensus       161 ADEPTGNLD  169 (223)
T COG2884         161 ADEPTGNLD  169 (223)
T ss_pred             ecCCCCCCC
Confidence            88 777654

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=6.3e-26  Score=195.15  Aligned_cols=172  Identities=22%  Similarity=0.189  Sum_probs=135.1

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH-hccccCCchH--------
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI--------  138 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~--------  138 (283)
                      .++++++|..+ |++++||||||||||||+|+|+|.++|+ |+|.+.+.++...++.++.+ .++..||..-        
T Consensus        18 ~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVl   97 (250)
T COG0411          18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVL   97 (250)
T ss_pred             EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHH
Confidence            47889999855 9999999999999999999999999999 99999999999988877644 4666788652        


Q ss_pred             HHHHhCCC-----------CCC--ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          139 RAVETGGC-----------PHA--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       139 ~~i~~~g~-----------~~~--~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                      +.+.++..           +..  ..++..+.+.+.|+.+++....+.+..+ |.||++++.|||+|+ +|.++++| |.
T Consensus        98 ENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPa  177 (250)
T COG0411          98 ENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA  177 (250)
T ss_pred             HHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCcc
Confidence            22333211           000  1233344677889999999999998888 999999999999998 69999998 98


Q ss_pred             CCCC-------------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          203 GGDK-------------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       203 ~g~~-------------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      .|..             +.+..+.+           +.+||+|+++..|+++++|++.++...
T Consensus       178 AGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d  240 (250)
T COG0411         178 AGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN  240 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC
Confidence            8842             22222222           389999999999999999999988764

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.6e-25  Score=192.56  Aligned_cols=170  Identities=17%  Similarity=0.187  Sum_probs=128.6

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC-CHHHHHHhccccCCchH--------
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK-EDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~-~~~~~~~~ig~v~q~~~--------  138 (283)
                      .++++++|... |++++|+|++|||||||.++|+|+.+|+ |+|.+.+.++... +...+++.+.+|||++.        
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t  100 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT  100 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence            58899999855 9999999999999999999999999998 9999999776543 34467788999999985        


Q ss_pred             --HHHHhCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc-----
Q 023354          139 --RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI-----  207 (283)
Q Consensus       139 --~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l-----  207 (283)
                        +.+.-+.++.. ..+...++.+.|+.+++.. .+++...| ||||+||++|||||+ +|.++++| |++.+|.     
T Consensus       101 v~~~l~Epl~~~~-~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~  179 (252)
T COG1124         101 VGRILSEPLRPHG-LSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQ  179 (252)
T ss_pred             HHHHHhhhhccCC-ccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHH
Confidence              11111122111 1112223677888888765 46777777 999999999999998 69988888 9987652     


Q ss_pred             --------hhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          208 --------PRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       208 --------~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                              .++++.++           .+||+|++|+.|.+++.++..+++.
T Consensus       180 IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         180 ILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             HHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence                    23333321           6899999999999999877766543

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.93  E-value=2.3e-25  Score=218.76  Aligned_cols=190  Identities=20%  Similarity=0.186  Sum_probs=145.9

Q ss_pred             CCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354           51 LAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~  128 (283)
                      ..+.+.+.+++|+|++ ..+.+++++|.. +|++++|+||+|||||||+++|++++.|+ |+|.+++.|+...+...+++
T Consensus       325 ~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~  403 (567)
T COG1132         325 TIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRK  403 (567)
T ss_pred             CCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHH
Confidence            3456899999999987 457899999985 59999999999999999999999999996 99999999999999999999


Q ss_pred             hccccCCchH------HHHHhCCCCCCChHHHHHHHHH-HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          129 RNGALPEERI------RAVETGGCPHAAIREDISINLG-PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       129 ~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~-~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      .+++|||++.      ..+...|++..+..+..+.... .+.++-  ..+++|.+++|     ||||+||++|||++. +
T Consensus       404 ~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~  483 (567)
T COG1132         404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN  483 (567)
T ss_pred             hccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            9999999985      2233445555443332221111 122221  23478999986     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cC----------CcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GG----------PGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      +.++++| ||+..|...+           .+          .+++.||+|++++.|++.+.|+..+.+..
T Consensus       484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~  553 (567)
T COG1132         484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK  553 (567)
T ss_pred             CCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence            7777776 8887543210           01          12467999999999999999999887763

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=3e-25  Score=189.57  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=125.4

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH-HhccccCCchH-------
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERI-------  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~-------  138 (283)
                      ..++.+++|..+ |++++|+|+|||||||||++|+|+.++. |+|.+.+.|+...++.++. ..++||||...       
T Consensus        16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTV   95 (237)
T COG0410          16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTV   95 (237)
T ss_pred             eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcH
Confidence            568889999854 9999999999999999999999999986 9999999999988776654 46999999764       


Q ss_pred             -HHHHhCCCCCCChHHHHHHHHHHHHHcc-ccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC-------
Q 023354          139 -RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK-------  206 (283)
Q Consensus       139 -~~i~~~g~~~~~~~~~~~~~~~~l~~l~-~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~-------  206 (283)
                       +.+.++++.............+.++.|- ++...+..-+. ||||+|+++|||||+ +|.++++| |+.|..       
T Consensus        96 eENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I  175 (237)
T COG0410          96 EENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI  175 (237)
T ss_pred             HHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHH
Confidence             2333444433220000000122333332 22333444444 999999999999998 59999999 998842       


Q ss_pred             ------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          207 ------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       207 ------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                            +.++.+.+           +++||+.+++..|+++..|+..++...
T Consensus       176 ~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~  227 (237)
T COG0410         176 FEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD  227 (237)
T ss_pred             HHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence                  22222222           378999999999999999988877664

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.92  E-value=2.3e-25  Score=223.26  Aligned_cols=187  Identities=17%  Similarity=0.117  Sum_probs=143.3

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.+++|.|+++..+.+++++|..+ |++++|+|++|||||||+|+|+|++.|+ |+|.+++.++...+...+++.
T Consensus       449 ~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  528 (686)
T TIGR03797       449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQ  528 (686)
T ss_pred             CceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhc
Confidence            45688999999998766788999999965 9999999999999999999999999998 999999999999999999999


Q ss_pred             ccccCCchHH------HHHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIR------AVETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      +|||+|++..      .+.+.+.+ .+ .+.+..+.+  .+.++  ....++|..+.|     ||||+||+++||++. +
T Consensus       529 i~~v~Q~~~lf~gTI~eNi~~~~~-~~-~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~  606 (686)
T TIGR03797       529 LGVVLQNGRLMSGSIFENIAGGAP-LT-LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK  606 (686)
T ss_pred             cEEEccCCccCcccHHHHHhcCCC-CC-HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999752      22223333 22 222222221  12222  123467777776     999999999999998 4


Q ss_pred             CcEEEEe-CCCCCCchhh---------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPRK---------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~---------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.++++| ||++.|...+         ...+          ++.||+|++++.|++.+.|+..+++.
T Consensus       607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~  673 (686)
T TIGR03797       607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA  673 (686)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            7777777 9998654221         1111          37899999999999999998877653

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.92  E-value=3.7e-25  Score=222.57  Aligned_cols=188  Identities=14%  Similarity=0.082  Sum_probs=143.3

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.+++|.|+....+.+++++|..+ |++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus       475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  554 (710)
T TIGR03796       475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS  554 (710)
T ss_pred             CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence            45688999999998777788999999955 9999999999999999999999999998 999999999998898999999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      +|||||++..+      +.+-+.+..+. +.+..+.+  .+.++.  ...+++..+.|     ||||+||+++||+++ +
T Consensus       555 i~~v~Q~~~lf~gTi~eNi~l~~~~~~~-~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~  633 (710)
T TIGR03796       555 VAMVDQDIFLFEGTVRDNLTLWDPTIPD-ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN  633 (710)
T ss_pred             eeEEecCChhhhccHHHHhhCCCCCCCH-HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence            99999997532      22223332222 22222111  122221  23467777776     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh---------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPRK---------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~---------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.++++| ||++.|...+         .+.          .+..||+|++++.|++.+.|+..+++.
T Consensus       634 p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       634 PSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA  700 (710)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence            7777777 9998653211         111          137799999999999999998877654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=2.6e-25  Score=192.50  Aligned_cols=154  Identities=18%  Similarity=0.098  Sum_probs=117.6

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ..++.+++|... |++|+|+||+|||||||||+|+|+.+|+ |+|.+.+..+...     ...++||||+..        
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~LlPW~Tv~   90 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVL   90 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCcccchhhHH
Confidence            568899999855 9999999999999999999999999998 9999999877322     246899999864        


Q ss_pred             HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch------
Q 023354          139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------  208 (283)
Q Consensus       139 ~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------  208 (283)
                      +.+.++.... ....+..+.+.+.|+.+++....+.+..+ ||||+||++|||+|+ +|.|+|+| |.+..|..      
T Consensus        91 ~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq  170 (248)
T COG1116          91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ  170 (248)
T ss_pred             hhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHH
Confidence            2222322111 12223344677899999999888888888 999999999999999 59899988 88875421      


Q ss_pred             -------hhcCCc-----------ccccCEEEEEcCC
Q 023354          209 -------RKGGPG-----------ITQADLLVINKTD  227 (283)
Q Consensus       209 -------~~~~~~-----------i~~ad~ivi~K~g  227 (283)
                             .+...+           +..||+|+++..+
T Consensus       171 ~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         171 DELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             HHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence                   111122           3689999999884

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.92  E-value=5e-25  Score=217.20  Aligned_cols=185  Identities=17%  Similarity=0.099  Sum_probs=138.9

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+.+.+++|.|+++ .+.+++++|.. +|++++|+||+|||||||+++|+|++ |+ |+|.+++.++...+...+++.+
T Consensus       348 ~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i  425 (588)
T PRK11174        348 VTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL  425 (588)
T ss_pred             ceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhhe
Confidence            357788888766654 56899999985 59999999999999999999999999 76 9999999999999999999999


Q ss_pred             cccCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354          131 GALPEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       131 g~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~  194 (283)
                      +||+|++.      ..+..-+.+..+. +.+..+.+  .+.++.  ...++|..++|     ||||+||++|||+++ +|
T Consensus       426 ~~v~Q~~~LF~~TI~eNI~~g~~~~~~-eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~  504 (588)
T PRK11174        426 SWVGQNPQLPHGTLRDNVLLGNPDASD-EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC  504 (588)
T ss_pred             EEecCCCcCCCcCHHHHhhcCCCCCCH-HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999975      2222334443332 22222111  223221  23577888877     999999999999998 57


Q ss_pred             cEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .|+++| ||++.|...+           ...          .+..||+|++++.|++.+.|+..+.+.
T Consensus       505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~  572 (588)
T PRK11174        505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQ  572 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence            777777 9998653211           111          237799999999999999998877664

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.92  E-value=7.8e-25  Score=219.69  Aligned_cols=189  Identities=21%  Similarity=0.211  Sum_probs=143.6

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.+++|.|+....+.+++++|..+ |++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus       461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~  540 (694)
T TIGR03375       461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN  540 (694)
T ss_pred             cceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence            45688999999998777778999999955 9999999999999999999999999998 999999999999999999999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      ++||+|++..+      +.+-+.+..+. +.+..+.+  .+.++  ....+++..+.|     ||||+||+++||++. +
T Consensus       541 i~~v~Q~~~lf~~TI~eNi~~~~~~~~~-~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~  619 (694)
T TIGR03375       541 IGYVPQDPRLFYGTLRDNIALGAPYADD-EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD  619 (694)
T ss_pred             cEEECCChhhhhhhHHHHHhCCCCCCCH-HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999997532      22233333322 22221111  12222  123467777766     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHhH
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |.++++| ||++.|...+           .+.          .+..||+|++++.|++.+.|+..+.+.+
T Consensus       620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence            7777777 9998653211           011          1378999999999999999988776543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=5.5e-25  Score=204.19  Aligned_cols=171  Identities=17%  Similarity=0.110  Sum_probs=129.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+.  .+.+||+||++.        
T Consensus        17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~   94 (356)
T PRK11650         17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVR   94 (356)
T ss_pred             CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHH
Confidence            35788899985 59999999999999999999999999998 9999999988765543  368999999863        


Q ss_pred             HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch------
Q 023354          139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------  208 (283)
Q Consensus       139 ~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------  208 (283)
                      +.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..      
T Consensus        95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~  174 (356)
T PRK11650         95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR  174 (356)
T ss_pred             HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            2222221111 11122223556778888887777887777 999999999999999 58888888 99986532      


Q ss_pred             -------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          209 -------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       209 -------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                             ++.+.+           ..+||+|++++.|++.+.|++.+++..
T Consensus       175 ~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~  225 (356)
T PRK11650        175 LEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK  225 (356)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence                   111222           268999999999999999998887653

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=9.8e-25  Score=197.18  Aligned_cols=184  Identities=17%  Similarity=0.127  Sum_probs=132.0

Q ss_pred             cccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC--HHHHHHh
Q 023354           57 EPIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMR  129 (283)
Q Consensus        57 ~~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~--~~~~~~~  129 (283)
                      ..++++.|....   .+++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....  ...+++.
T Consensus         5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   84 (287)
T PRK13637          5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK   84 (287)
T ss_pred             EEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhc
Confidence            344455554322   36899999985 59999999999999999999999999988 99999998876532  3456778


Q ss_pred             ccccCCchH---------HHHHhCCCC-CCChHHHHHHHHHHHHHcccc--ccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          130 NGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       130 ig~v~q~~~---------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~--~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      +||+||++.         +.+.++... .....+....+.+.++.+++.  ...+..+.+ |+||+||++||++|+ +|.
T Consensus        85 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~  164 (287)
T PRK13637         85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPK  164 (287)
T ss_pred             eEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            999999852         111111110 011122223456678887775  446666666 999999999999998 588


Q ss_pred             EEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          196 IYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       196 l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++++| |+++.|..             .+.+.++           .+||+|++++.|++.+.|++.+.+.
T Consensus       165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13637        165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK  234 (287)
T ss_pred             EEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            88888 99987532             1112221           6799999999999999888877664

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.92  E-value=7.8e-25  Score=203.16  Aligned_cols=172  Identities=16%  Similarity=0.097  Sum_probs=129.8

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhccccCCchH----
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI----  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~----  138 (283)
                      ..++++++|..+ |++++|+|||||||||||++|+|+++|+ |+|.+.+.++...++.++    ++.+||++|.+.    
T Consensus         6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            347889999855 9999999999999999999999999998 999999999887776665    568999999753    


Q ss_pred             ----HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--
Q 023354          139 ----RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--  208 (283)
Q Consensus       139 ----~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--  208 (283)
                          +.+.++.... ....+....+.+.++.+++....+..+.+ ||||+||++|||+|+ +|.++|+| |+++.|..  
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r  165 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR  165 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence                1122211000 01112233556778888777667777777 999999999999998 58888877 99986532  


Q ss_pred             -----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 -----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 -----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                 .+.+.+           ..+||+|++++.|++.+.|++.+.+.
T Consensus       166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~  219 (363)
T TIGR01186       166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR  219 (363)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence                       111222           26799999999999999888777654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.92  E-value=6.9e-25  Score=199.83  Aligned_cols=183  Identities=20%  Similarity=0.167  Sum_probs=132.8

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...++...|..  ..++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ...++.+||
T Consensus         8 i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~   84 (306)
T PRK13537          8 IDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGV   84 (306)
T ss_pred             EEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEE
Confidence            444555555542  358899999854 9999999999999999999999999998 99999998876533 356788999


Q ss_pred             cCCchH--------HHHHh-CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-
Q 023354          133 LPEERI--------RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-  200 (283)
Q Consensus       133 v~q~~~--------~~i~~-~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-  200 (283)
                      +||++.        +.+.+ +........+....+.+.++.+.+....+..+.. |+||+||++||++++. |.++++| 
T Consensus        85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE  164 (306)
T PRK13537         85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE  164 (306)
T ss_pred             EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            999853        12221 1111111122223445667777776667777777 9999999999999994 8888888 


Q ss_pred             CCCCCCchhh------------cCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          201 VSGGDKIPRK------------GGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 pt~g~~l~~~------------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |++|.|...+            .+.++           ++||+|++++.|++.+.|++.+...
T Consensus       165 Pt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  227 (306)
T PRK13537        165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE  227 (306)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999764311            12221           6799999999999999888766543

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.4e-24  Score=203.89  Aligned_cols=186  Identities=19%  Similarity=0.170  Sum_probs=146.1

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      ....++++|.|+++..+++++.+|..+ ||+|+|+|++|||||||++.|+|.+.|+ |+|.+.+.++..+++..+++.++
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~  415 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS  415 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence            468889999999999999999999965 9999999999999999999999999998 99999999999999999999999


Q ss_pred             ccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcccc--ccCCCcccC-----CchHHHHHHHHHHhc-CCc
Q 023354          132 ALPEERIRA------VETGGCPHAAIREDISINLG--PLEELSNL--FKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       132 ~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~~~--~~~d~~i~e-----SgGq~q~~~ia~al~-~~~  195 (283)
                      +++|.+..+      +..-+++..+..+.. .+.+  .|+++...  ++++..+.|     ||||+||++|||++. |..
T Consensus       416 vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~-~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap  494 (573)
T COG4987         416 VLTQRVHLFSGTLRDNLRLANPDASDEELW-AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP  494 (573)
T ss_pred             hhccchHHHHHHHHHHHhhcCCCCCHHHHH-HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence            999987533      333455555443322 2222  34444333  366777777     999999999999998 455


Q ss_pred             EEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          196 IYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       196 l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++++| ||.|.|-..+           .++          .++.+|+|+++..|+++++|...+.+.
T Consensus       495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             eEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence            55555 9999763221           111          248899999999999999999887776

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.6e-24  Score=204.43  Aligned_cols=186  Identities=18%  Similarity=0.145  Sum_probs=143.0

Q ss_pred             CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      ..+...+.++.|++.. +++.+.+|+.+ |+.++|+|++|||||||+++|+|+++|+ |+|.+++.+....++..+++.+
T Consensus       319 ~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i  397 (559)
T COG4988         319 IEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI  397 (559)
T ss_pred             ceeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence            3344557788888877 88999999855 9999999999999999999999999987 9999999999999999999999


Q ss_pred             cccCCchHHH------HHhCCCCCCChHHHHHHHH--HHHHHccc-cccCCCcccC-----CchHHHHHHHHHHhcC-Cc
Q 023354          131 GALPEERIRA------VETGGCPHAAIREDISINL--GPLEELSN-LFKADLLLCE-----SGGDNLAANFSRELAD-YI  195 (283)
Q Consensus       131 g~v~q~~~~~------i~~~g~~~~~~~~~~~~~~--~~l~~l~~-~~~~d~~i~e-----SgGq~q~~~ia~al~~-~~  195 (283)
                      ++|+|++..+      +.+-+.+..+. +.+..+.  ..+.++.. ..+.|..+.|     ||||+||+++||++.+ +.
T Consensus       398 ~~v~Q~p~lf~gTireNi~l~~~~~s~-e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~  476 (559)
T COG4988         398 SWVSQNPYLFAGTIRENILLARPDASD-EEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS  476 (559)
T ss_pred             eeeCCCCccccccHHHHhhccCCcCCH-HHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence            9999998522      22223333322 2222222  23444433 3678999988     9999999999999996 56


Q ss_pred             EEEEe-CCCCCCchhhc-----------CCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          196 IYIID-VSGGDKIPRKG-----------GPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       196 l~llD-pt~g~~l~~~~-----------~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++++| ||++.|...+.           ..+          +..+|+|++++.|++++.|...+...
T Consensus       477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~  543 (559)
T COG4988         477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE  543 (559)
T ss_pred             EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence            66666 99987754321           111          37899999999999999999887754

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2e-24  Score=194.34  Aligned_cols=186  Identities=13%  Similarity=0.044  Sum_probs=135.6

Q ss_pred             ccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           56 HEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        56 ~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      ...++++.|.... ..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||
T Consensus         6 ~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (279)
T PRK13650          6 EVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGM   85 (279)
T ss_pred             EEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceE
Confidence            3445555554322 35889999985 59999999999999999999999999988 999999998876566667788999


Q ss_pred             cCCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          133 LPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       133 v~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ++|++..         .+.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++|+|
T Consensus        86 v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD  165 (279)
T PRK13650         86 VFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD  165 (279)
T ss_pred             EEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            9998621         111211111 11112223456678888777667777777 999999999999998 58888888


Q ss_pred             -CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          201 -VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       201 -pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                       |+++.|..             .+.+.+          +..||++++++.|++...|++.+.+..
T Consensus       166 EPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        166 EATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence             99986532             111222          257999999999999988887776653

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.92  E-value=1.1e-24  Score=191.06  Aligned_cols=170  Identities=22%  Similarity=0.179  Sum_probs=123.4

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccccCCchH------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERI------  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~------  138 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+.   ..+++.++|++|++.      
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   93 (235)
T cd03261          14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT   93 (235)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence            5788999985 59999999999999999999999999987 999999888765443   345677999999753      


Q ss_pred             --HHHHhCCCC--CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh--
Q 023354          139 --RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR--  209 (283)
Q Consensus       139 --~~i~~~g~~--~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~--  209 (283)
                        +.+.++...  .....+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...  
T Consensus        94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~  173 (235)
T cd03261          94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG  173 (235)
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence              112221111  111112223455677777776666777776 999999999999998 58888888 999875321  


Q ss_pred             -----------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          210 -----------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       210 -----------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                                 +.+.++           .+||++++++.|++.+.|+..+.+
T Consensus       174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  225 (235)
T cd03261         174 VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR  225 (235)
T ss_pred             HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence                       112221           579999999999998877765543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=3.7e-25  Score=184.89  Aligned_cols=180  Identities=19%  Similarity=0.161  Sum_probs=134.9

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH-hccccCCchHHHHHhC-
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERIRAVETG-  144 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~~~i~~~-  144 (283)
                      ...+++++|.. +||+|+|+|||||||||.+.+++|+.+|+ |+|.+++.|+...+...+.+ .+||+||++..+-.+. 
T Consensus        17 r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV   96 (243)
T COG1137          17 RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTV   96 (243)
T ss_pred             eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcH
Confidence            45778888885 59999999999999999999999999998 99999999999887655544 6999999985332211 


Q ss_pred             -------CCCCC-ChH--HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc----
Q 023354          145 -------GCPHA-AIR--EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI----  207 (283)
Q Consensus       145 -------g~~~~-~~~--~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l----  207 (283)
                             ..... ...  +......+.|++|.+.+..+.+-.. |||+++|+.|||+|+ +|..+|+| |.+|-|.    
T Consensus        97 ~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~  176 (243)
T COG1137          97 EDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI  176 (243)
T ss_pred             HHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHH
Confidence                   11111 111  2222344678888877777666555 999999999999998 68888888 9998542    


Q ss_pred             --hh------hcC-----------CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC
Q 023354          208 --PR------KGG-----------PGITQADLLVINKTDLASAIGADLAVMERDALRMRD  248 (283)
Q Consensus       208 --~~------~~~-----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~  248 (283)
                        +.      ..+           .++..||+..++..|.+.+.|++.+.+.....+..|
T Consensus       177 dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr~~Y  236 (243)
T COG1137         177 DIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVY  236 (243)
T ss_pred             HHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhhhhc
Confidence              11      111           134899999999999999999999988865544443

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.91  E-value=2.3e-24  Score=212.26  Aligned_cols=189  Identities=16%  Similarity=0.133  Sum_probs=141.5

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.+++|.|++...+.+++.++.. +|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus       339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  418 (582)
T PRK11176        339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ  418 (582)
T ss_pred             CCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhh
Confidence            3568888999999876667899999985 59999999999999999999999999998 999999999988888889999


Q ss_pred             ccccCCchHH------HHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIR------AVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      ++|+||++..      .+.+-+.+.....+.+..+.+  .+.++.  ...++|..+.|     ||||+||+++||++. +
T Consensus       419 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~  498 (582)
T PRK11176        419 VALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD  498 (582)
T ss_pred             ceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence            9999999742      222223222112222222221  122221  23567777766     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.|+++| ||++.|...+           ...+          ++.||+|++++.|++.+.|+..+.+.
T Consensus       499 ~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~  567 (582)
T PRK11176        499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA  567 (582)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            7777777 9998653211           1111          37899999999999999998877654

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.3e-24  Score=200.99  Aligned_cols=182  Identities=18%  Similarity=0.107  Sum_probs=130.1

Q ss_pred             ccCCCCCCC--CCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HHHhc
Q 023354           58 PIYSPGYFS--RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRN  130 (283)
Q Consensus        58 ~~~~~~~~~--~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~~~i  130 (283)
                      .++++.|..  ....++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+   +++.+
T Consensus         5 ~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i   84 (343)
T PRK11153          5 KNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQI   84 (343)
T ss_pred             EeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCE
Confidence            344555542  1345789999985 59999999999999999999999999987 99999998887655433   35679


Q ss_pred             cccCCchH--------HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          131 GALPEERI--------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       131 g~v~q~~~--------~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      ||+||++.        +.+.++.. ......+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++++
T Consensus        85 g~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlL  164 (343)
T PRK11153         85 GMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLC  164 (343)
T ss_pred             EEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999753        11222110 0011112223455677777776666777777 999999999999998 5888888


Q ss_pred             e-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          200 D-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       200 D-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      | |+++.|..             ++.+.++           .+||++++++.|++.+.|+..+.+
T Consensus       165 DEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~  229 (343)
T PRK11153        165 DEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF  229 (343)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            8 99997532             1112221           579999999999999888776654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.91  E-value=1e-24  Score=202.16  Aligned_cols=180  Identities=16%  Similarity=0.124  Sum_probs=133.1

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ..+++..|..  ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+++.++....+.  ++.+||+|
T Consensus         7 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~   82 (353)
T TIGR03265         7 IDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVF   82 (353)
T ss_pred             EEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEe
Confidence            3344444432  34688899985 49999999999999999999999999998 9999999888655443  46799999


Q ss_pred             CchH--------HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          135 EERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       135 q~~~--------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                      |+..        +.+.++..... ...+....+.+.++.+++....++.+.+ ||||+||+++||+|+ +|.++++| |+
T Consensus        83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~  162 (353)
T TIGR03265        83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL  162 (353)
T ss_pred             CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            9853        12222211111 1112223566788888887777877777 999999999999998 58888888 99


Q ss_pred             CCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          203 GGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       203 ~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++.|..             ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~  224 (353)
T TIGR03265       163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR  224 (353)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            986532             111222           26899999999999999999888775

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=1.3e-24  Score=201.17  Aligned_cols=182  Identities=14%  Similarity=0.070  Sum_probs=133.8

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...++...|..  ..++++++|..+ |++++|+|||||||||||++|+|+++|+ |+|.+++.++...++.  ++.+||
T Consensus         7 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~   82 (351)
T PRK11432          7 VVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICM   82 (351)
T ss_pred             EEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence            444455555532  347888999854 9999999999999999999999999998 9999999988755442  468999


Q ss_pred             cCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      +||+..        +.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++++| 
T Consensus        83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDE  162 (351)
T PRK11432         83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDE  162 (351)
T ss_pred             EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            999853        2222221111 11122223556677777777777777777 999999999999998 58888888 


Q ss_pred             CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |+++.|..             ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       163 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~  226 (351)
T PRK11432        163 PLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR  226 (351)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99986532             111222           26799999999999999999887765

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.91  E-value=2e-24  Score=200.21  Aligned_cols=169  Identities=17%  Similarity=0.125  Sum_probs=128.3

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (283)
                      ..+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+++.++....+  .++.+||+||++.        +
T Consensus        16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv~e   93 (353)
T PRK10851         16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTVFD   93 (353)
T ss_pred             EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcHHH
Confidence            4788999985 59999999999999999999999999988 999999988865433  3467999999853        2


Q ss_pred             HHHhCCCC-----CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch---
Q 023354          140 AVETGGCP-----HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP---  208 (283)
Q Consensus       140 ~i~~~g~~-----~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~---  208 (283)
                      .+.++...     .....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|.++++| |+++.|..   
T Consensus        94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~  173 (353)
T PRK10851         94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK  173 (353)
T ss_pred             HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            22232211     111122233566778888777777777777 999999999999998 58888888 99986532   


Q ss_pred             ----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 ----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 ----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                ++.+.+           ..+||+|++++.|++.+.|++.+.+.
T Consensus       174 ~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~  226 (353)
T PRK10851        174 ELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR  226 (353)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence                      111222           26799999999999999998888765

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.91  E-value=1.4e-24  Score=218.14  Aligned_cols=188  Identities=17%  Similarity=0.173  Sum_probs=141.9

Q ss_pred             CCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354           52 APHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~  128 (283)
                      .+.+.+.+++|.|++.. .+.+++++|..+ |++++|+||+|||||||+++|+|+++|+ |+|.+++.++.+.+...+++
T Consensus       476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~  555 (711)
T TIGR00958       476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR  555 (711)
T ss_pred             CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence            46789999999998754 578999999955 9999999999999999999999999998 99999999999888899999


Q ss_pred             hccccCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354          129 RNGALPEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-  192 (283)
Q Consensus       129 ~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-  192 (283)
                      .++|++|++.      ..+.+.+.+.... +.+..+.+  .+.++.  ...++|..+.|     ||||+||++|||++. 
T Consensus       556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~  634 (711)
T TIGR00958       556 QVALVGQEPVLFSGSVRENIAYGLTDTPD-EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR  634 (711)
T ss_pred             hceEEecCccccccCHHHHHhcCCCCCCH-HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence            9999999975      2222334443332 22222111  112221  23457777766     999999999999998 


Q ss_pred             CCcEEEEe-CCCCCCchh---------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 DYIIYIID-VSGGDKIPR---------KGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~---------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|.|+++| ||++.|...         ..+.+          +..||+|++++.|++.+.|+..+.++
T Consensus       635 ~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~  702 (711)
T TIGR00958       635 KPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME  702 (711)
T ss_pred             CCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence            47777777 999865321         11111          37799999999999999999877654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.91  E-value=4.3e-24  Score=194.30  Aligned_cols=170  Identities=21%  Similarity=0.156  Sum_probs=125.1

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.        
T Consensus         6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~   84 (302)
T TIGR01188         6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR   84 (302)
T ss_pred             eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence            35788999985 59999999999999999999999999987 999999988754 33456678999999753        


Q ss_pred             HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354          139 RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-----  209 (283)
Q Consensus       139 ~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-----  209 (283)
                      +.+.+... ......+....+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...     
T Consensus        85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  164 (302)
T TIGR01188        85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW  164 (302)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence            11221110 0011111223455678888777667777777 999999999999998 48888888 999976421     


Q ss_pred             -------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          210 -------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       210 -------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                             +.+.++           .+||++++++.|++...|+..+..
T Consensus       165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  212 (302)
T TIGR01188       165 DYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK  212 (302)
T ss_pred             HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                   112221           579999999999999888776554

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=3e-24  Score=194.29  Aligned_cols=184  Identities=16%  Similarity=0.105  Sum_probs=130.6

Q ss_pred             cccCCCCCCCCC---CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC----CCHHHHH
Q 023354           57 EPIYSPGYFSRR---APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFL  127 (283)
Q Consensus        57 ~~~~~~~~~~~~---~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----~~~~~~~  127 (283)
                      ..++.+.|....   ..++++++|..+ |++++|+|+||||||||+++|+|+++|+ |+|.+++.++..    .....++
T Consensus         5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (290)
T PRK13634          5 FQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLR   84 (290)
T ss_pred             EEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHH
Confidence            334445554322   358899999855 9999999999999999999999999987 999999988753    1234566


Q ss_pred             HhccccCCchH---------HHHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354          128 MRNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       128 ~~ig~v~q~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      +.+||+||++.         +.+.++.... ....+....+.+.++.+++. ...+..+.+ |+||+||+.||++++ +|
T Consensus        85 ~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P  164 (290)
T PRK13634         85 KKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEP  164 (290)
T ss_pred             hhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            78999999852         1111211111 11122223455677787775 445666666 999999999999998 58


Q ss_pred             cEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .++++| |+++.|..             .+.+.++           ++||+|++++.|++.+.|++.+.+.
T Consensus       165 ~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  235 (290)
T PRK13634        165 EVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA  235 (290)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            888888 99986532             1112221           6799999999999999888777654

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=5e-24  Score=191.32  Aligned_cols=181  Identities=15%  Similarity=0.074  Sum_probs=131.0

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      ...++++.|+. ...++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||+
T Consensus         6 ~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v   84 (274)
T PRK13647          6 EVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLV   84 (274)
T ss_pred             EEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEE
Confidence            34455555542 235889999984 59999999999999999999999999987 9999999888766666677789999


Q ss_pred             CCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          134 PEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       134 ~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      +|++..         .+.++.... .........+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++++| 
T Consensus        85 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE  164 (274)
T PRK13647         85 FQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDE  164 (274)
T ss_pred             ecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            998621         111111000 01111122445677777776667777777 999999999999998 58888888 


Q ss_pred             CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHH
Q 023354          201 VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       201 pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                      |+++.|...            +.+.++           ++||++++++.|++.+.|++.+
T Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  224 (274)
T PRK13647        165 PMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSL  224 (274)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            999875321            112221           6899999999999998887643

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.91  E-value=4e-24  Score=197.24  Aligned_cols=184  Identities=20%  Similarity=0.166  Sum_probs=134.5

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .+...+.+..|..  ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....++.+|
T Consensus        41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig  117 (340)
T PRK13536         41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIG  117 (340)
T ss_pred             eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEE
Confidence            3556666666642  35899999985 49999999999999999999999999998 9999999887643 345667899


Q ss_pred             ccCCchH--------HHHHh-CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          132 ALPEERI--------RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       132 ~v~q~~~--------~~i~~-~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      |+||++.        +.+.+ +........+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++++|
T Consensus       118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD  197 (340)
T PRK13536        118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD  197 (340)
T ss_pred             EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            9999753        12221 1111111122222344567777777667777777 999999999999999 58888888


Q ss_pred             -CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       |++|.|...            +.+.++           .+||+|++++.|++.+.|++.+...
T Consensus       198 EPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~  261 (340)
T PRK13536        198 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID  261 (340)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence             999976421            112221           6899999999999999888776643

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.91  E-value=2.7e-24  Score=211.51  Aligned_cols=188  Identities=17%  Similarity=0.157  Sum_probs=140.9

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.+++|.|++...+.+++++|..+ |++++|+||+|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus       336 ~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~  415 (574)
T PRK11160        336 QVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA  415 (574)
T ss_pred             CCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence            35688999999998765678999999855 9999999999999999999999999988 999999999999888899999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHccc-cccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~~-~~~~d~~i~e-----SgGq~q~~~ia~al~-~~  194 (283)
                      ++|++|++..+      +...+++..+ .+.+..+.+  .+.++.. ..++|..+.|     ||||+||+++||+++ +|
T Consensus       416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~-~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~  494 (574)
T PRK11160        416 ISVVSQRVHLFSATLRDNLLLAAPNAS-DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA  494 (574)
T ss_pred             eeEEcccchhhcccHHHHhhcCCCccC-HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999998522      1222333222 222221111  1222211 3467777766     999999999999998 57


Q ss_pred             cEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .++++| ||++.|...+           .+.          .+..||+|++++.|++.+.|+..+.+.
T Consensus       495 ~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  562 (574)
T PRK11160        495 PLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLA  562 (574)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence            777777 9998653211           011          136799999999999999998876654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.91  E-value=2.8e-24  Score=216.18  Aligned_cols=188  Identities=15%  Similarity=0.121  Sum_probs=141.1

Q ss_pred             CCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354           51 LAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~  128 (283)
                      ..+.+.+.+++|.|+. ..+.+++++|..+ |++++|+|++|||||||+++|+|++.|+ |+|.+++.++...+...+++
T Consensus       470 ~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~  548 (708)
T TIGR01193       470 LNGDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ  548 (708)
T ss_pred             CCCcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence            3456888999999964 3568999999955 9999999999999999999999999998 99999999999999999999


Q ss_pred             hccccCCchHH-------HHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354          129 RNGALPEERIR-------AVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA  192 (283)
Q Consensus       129 ~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~  192 (283)
                      .+|||||++..       .+.++..+..+. +.+..+.+  .+.++.  ...++|..+.|     ||||+||++|||+++
T Consensus       549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~-~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall  627 (708)
T TIGR01193       549 FINYLPQEPYIFSGSILENLLLGAKENVSQ-DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL  627 (708)
T ss_pred             heEEEecCceehhHHHHHHHhccCCCCCCH-HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh
Confidence            99999999752       222332233322 22222111  122221  23467777776     999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh---------c-CCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 -DYIIYIID-VSGGDKIPRK---------G-GPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~---------~-~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       +|.++++| ||++.|...+         . +.+          +..||+|++++.|++.+.|+..+.+.
T Consensus       628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~  697 (708)
T TIGR01193       628 TDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD  697 (708)
T ss_pred             hCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence             57777777 9998653211         1 111          37899999999999999998877654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=4.8e-24  Score=189.10  Aligned_cols=172  Identities=19%  Similarity=0.139  Sum_probs=135.8

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhccccCCchH-----
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI-----  138 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~-----  138 (283)
                      ..+++.+|..+ |++++|+|-+|||||||+++|.+++.|+ |+|.+.+.|+...+..++    ++++++|||..-     
T Consensus        42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr  121 (386)
T COG4175          42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR  121 (386)
T ss_pred             EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence            45778888865 9999999999999999999999999998 999999999998887654    346999999753     


Q ss_pred             ---HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC-----
Q 023354          139 ---RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK-----  206 (283)
Q Consensus       139 ---~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~-----  206 (283)
                         +.+.+|..... ...+..+.+.++|+.+++....+.++.| ||||+||+.+||||+ +|.|+|+| |.+.+|     
T Consensus       122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~  201 (386)
T COG4175         122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT  201 (386)
T ss_pred             hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence               12223322111 1234445778899999999888888888 999999999999999 58888888 887643     


Q ss_pred             --------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          207 --------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       207 --------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                              ++.+...+           ++..|+|.++|.|.+++.|++.+.+..
T Consensus       202 ~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~  255 (386)
T COG4175         202 EMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN  255 (386)
T ss_pred             HHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcC
Confidence                    23333333           378999999999999999999988763

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.91  E-value=1.8e-24  Score=201.83  Aligned_cols=204  Identities=18%  Similarity=0.175  Sum_probs=153.1

Q ss_pred             CCCCcccCCCCCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354           40 SDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (283)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d  117 (283)
                      |........+...|+.......+.-|...++.+++++|... |+.++|+||+|||||||.|+|.|..+|. |.|.+++.+
T Consensus       320 p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~  399 (580)
T COG4618         320 PAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD  399 (580)
T ss_pred             ccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh
Confidence            44455566777788877777777777788899999999955 9999999999999999999999999998 999999999


Q ss_pred             CCCCCHHHHHHhccccCCchHHHHH-----hCCCC-CCChHHHHH-HHHHHHHHc--cccccCCCcccC-----CchHHH
Q 023354          118 IFTKEDGEFLMRNGALPEERIRAVE-----TGGCP-HAAIREDIS-INLGPLEEL--SNLFKADLLLCE-----SGGDNL  183 (283)
Q Consensus       118 ~~~~~~~~~~~~ig~v~q~~~~~i~-----~~g~~-~~~~~~~~~-~~~~~l~~l--~~~~~~d~~i~e-----SgGq~q  183 (283)
                      +.+++..++-+.|||+||+...+--     ...+. ..+....++ .......++  ....+||..+++     ||||||
T Consensus       400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ  479 (580)
T COG4618         400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ  479 (580)
T ss_pred             hhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence            9999999999999999998532211     11111 111111111 111223333  245689999988     999999


Q ss_pred             HHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCC---------cccccCEEEEEcCCcccccCChHHHH
Q 023354          184 AANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGP---------GITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       184 ~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~---------~i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      |+.+||++. +|.++++| |.+..|-.             .+...         .+..+|+|++++.|.+...|+..+++
T Consensus       480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL  559 (580)
T COG4618         480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL  559 (580)
T ss_pred             HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence            999999998 69999998 77664421             11111         13789999999999999999998887


Q ss_pred             hHHH
Q 023354          240 ERDA  243 (283)
Q Consensus       240 ~~~~  243 (283)
                      .+..
T Consensus       560 a~~~  563 (580)
T COG4618         560 AKVL  563 (580)
T ss_pred             HHhc
Confidence            6543

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.91  E-value=2.9e-24  Score=188.92  Aligned_cols=170  Identities=20%  Similarity=0.156  Sum_probs=122.4

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC---HHHHHHhccccCCchH-----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE---DGEFLMRNGALPEERI-----  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~---~~~~~~~ig~v~q~~~-----  138 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....   ...+++.++|++|++.     
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL   93 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence            35788999984 59999999999999999999999999887 99999988876544   2345677999999753     


Q ss_pred             ---HHHHhCCCCC---------CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          139 ---RAVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       139 ---~~i~~~g~~~---------~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                         +.+.++....         .........+.+.++.++.....+..+.+ |+||+||++||++++ +|.|+++| |++
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  173 (241)
T cd03256          94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA  173 (241)
T ss_pred             cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence               1111111100         00011223445667777766666666666 999999999999998 58888888 999


Q ss_pred             CCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          204 GDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       204 g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      +.|..             .+.+.++           .+||++++++.|++...|+..+.
T Consensus       174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (241)
T cd03256         174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL  232 (241)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence            86532             1112221           58999999999999888776654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=4.1e-24  Score=194.58  Aligned_cols=185  Identities=15%  Similarity=0.079  Sum_probs=130.8

Q ss_pred             cccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC-----------
Q 023354           57 EPIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-----------  120 (283)
Q Consensus        57 ~~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~-----------  120 (283)
                      ..++.+.|....   ..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+...           
T Consensus         5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   84 (305)
T PRK13651          5 VKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVL   84 (305)
T ss_pred             EEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccc
Confidence            344455554332   25789999985 59999999999999999999999999987 999998665421           


Q ss_pred             -------------CCHHHHHHhccccCCchH---------HHHHhCCCCCC-ChHHHHHHHHHHHHHcccc-ccCCCccc
Q 023354          121 -------------KEDGEFLMRNGALPEERI---------RAVETGGCPHA-AIREDISINLGPLEELSNL-FKADLLLC  176 (283)
Q Consensus       121 -------------~~~~~~~~~ig~v~q~~~---------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~-~~~d~~i~  176 (283)
                                   .....+++.+||+||++.         +.+.++..... ...+....+.+.++.+++. ...+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~  164 (305)
T PRK13651         85 EKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPF  164 (305)
T ss_pred             cccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChh
Confidence                         123456778999999752         11222211111 1112233556778888775 45666666


Q ss_pred             C-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCccc
Q 023354          177 E-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLAS  230 (283)
Q Consensus       177 e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~  230 (283)
                      + |+||+||++||++++ +|.++++| |+++.|...            +.+.+           .++||+|++++.|+++
T Consensus       165 ~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~  244 (305)
T PRK13651        165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII  244 (305)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEE
Confidence            6 999999999999998 58888888 999865321            11222           1689999999999999


Q ss_pred             ccCChHHHHhH
Q 023354          231 AIGADLAVMER  241 (283)
Q Consensus       231 ~~g~~~e~~~~  241 (283)
                      +.|++.+.+..
T Consensus       245 ~~g~~~~~~~~  255 (305)
T PRK13651        245 KDGDTYDILSD  255 (305)
T ss_pred             EECCHHHHhcC
Confidence            98888776653

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=5.4e-24  Score=192.25  Aligned_cols=184  Identities=17%  Similarity=0.086  Sum_probs=130.3

Q ss_pred             ccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC----CHHHHHH
Q 023354           58 PIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLM  128 (283)
Q Consensus        58 ~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~----~~~~~~~  128 (283)
                      .++++.|....   .+++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+++.++...    ....+++
T Consensus         6 ~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~   85 (286)
T PRK13646          6 DNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRK   85 (286)
T ss_pred             EEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh
Confidence            34445554322   35899999985 59999999999999999999999999988 9999999887542    2345677


Q ss_pred             hccccCCchH---------HHHHhCCCC-CCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          129 RNGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       129 ~ig~v~q~~~---------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      .+||+||++.         +.+.++... .....+....+.+.++.+++. ...+..+.+ |+||+||++||++|+ +|.
T Consensus        86 ~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~  165 (286)
T PRK13646         86 RIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPD  165 (286)
T ss_pred             heEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence            8999999752         111111101 011112223455677777764 445566666 999999999999998 588


Q ss_pred             EEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHhH
Q 023354          196 IYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       196 l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      ++++| |+++.|..             .+.+.++           ++||++++++.|++.+.|++.+.+..
T Consensus       166 illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  236 (286)
T PRK13646        166 IIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD  236 (286)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            88888 99986532             1112221           67999999999999998888776653

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=6.5e-24  Score=191.08  Aligned_cols=186  Identities=16%  Similarity=0.057  Sum_probs=134.9

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...++.+.|......++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||
T Consensus         6 l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (279)
T PRK13635          6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM   85 (279)
T ss_pred             EEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEE
Confidence            3445556666544446889999985 59999999999999999999999999988 999999998876655666778999


Q ss_pred             cCCchH-H--------HHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          133 LPEERI-R--------AVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       133 v~q~~~-~--------~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ++|++. .        .+.++..... ...+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.|+++|
T Consensus        86 ~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  165 (279)
T PRK13635         86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD  165 (279)
T ss_pred             EEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999862 1        1111111111 1122223456677777776666776767 999999999999998 58888888


Q ss_pred             -CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       |+++.|..             .+.+.+          +..||++++++.|++.+.|+..+.+.
T Consensus       166 EPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        166 EATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK  229 (279)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence             99997532             111222          25699999999999998887766554

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=5.4e-24  Score=195.01  Aligned_cols=188  Identities=14%  Similarity=0.051  Sum_probs=135.1

Q ss_pred             CccccccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC------
Q 023354           53 PHSHEPIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK------  121 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~------  121 (283)
                      ..+.+.++++.|....   .+++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...      
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~   99 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL   99 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence            3467778888876432   35899999985 59999999999999999999999999987 9999998776532      


Q ss_pred             ----------CHHHHHHhccccCCchH---------HHHHhCCCC-CCChHHHHHHHHHHHHHcccc-ccCCCcccC-Cc
Q 023354          122 ----------EDGEFLMRNGALPEERI---------RAVETGGCP-HAAIREDISINLGPLEELSNL-FKADLLLCE-SG  179 (283)
Q Consensus       122 ----------~~~~~~~~ig~v~q~~~---------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-Sg  179 (283)
                                ....+++.+||++|++.         +.+.++... .....+....+.+.++.+++. ...+..+.+ |+
T Consensus       100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg  179 (320)
T PRK13631        100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG  179 (320)
T ss_pred             cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence                      23456778999999862         111222111 111122223455677777764 345655556 99


Q ss_pred             hHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCC
Q 023354          180 GDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       180 Gq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~  234 (283)
                      ||+||++|||+|+ +|.++|+| |+++.|...            +.+.+           .++||+|++++.|++...|+
T Consensus       180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~  259 (320)
T PRK13631        180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT  259 (320)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            9999999999998 58888877 999875321            11222           16799999999999999998


Q ss_pred             hHHHHh
Q 023354          235 DLAVME  240 (283)
Q Consensus       235 ~~e~~~  240 (283)
                      +.+.+.
T Consensus       260 ~~~~~~  265 (320)
T PRK13631        260 PYEIFT  265 (320)
T ss_pred             HHHHhc
Confidence            877654

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.6e-23  Score=184.43  Aligned_cols=180  Identities=22%  Similarity=0.158  Sum_probs=126.8

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccc
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGA  132 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~  132 (283)
                      .++...|.. ....+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....   ..+++.++|
T Consensus         5 ~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~   83 (243)
T TIGR02315         5 ENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGM   83 (243)
T ss_pred             EeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence            344555541 245789999985 59999999999999999999999999987 999998887765433   235677999


Q ss_pred             cCCchHH--------HHHhCCCCC---------CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          133 LPEERIR--------AVETGGCPH---------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       133 v~q~~~~--------~i~~~g~~~---------~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      ++|++..        .+.++....         ....+....+.+.++.++.....+..+.+ |+||+||++||++++ +
T Consensus        84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  163 (243)
T TIGR02315        84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQ  163 (243)
T ss_pred             EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            9998531        111211100         00112223455667777766666666666 999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          194 YIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      |.++++| |+++.|..             .+.+.++           ++||++++++.|++...|++.+.
T Consensus       164 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       164 PDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            8888888 99986532             1112221           67999999999999887776654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=5.4e-24  Score=192.41  Aligned_cols=184  Identities=16%  Similarity=0.128  Sum_probs=130.6

Q ss_pred             cccCCCCCCCCC---CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC----CCHHHHH
Q 023354           57 EPIYSPGYFSRR---APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----KEDGEFL  127 (283)
Q Consensus        57 ~~~~~~~~~~~~---~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----~~~~~~~  127 (283)
                      +.++++.|....   .+++++++|... |++++|+|+||||||||+++|+|+++|+ |+|.+++.++..    ....+++
T Consensus         4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   83 (288)
T PRK13643          4 FEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVR   83 (288)
T ss_pred             EEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHH
Confidence            445556665332   258899999854 9999999999999999999999999987 999999988742    2245567


Q ss_pred             HhccccCCchH---------HHHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354          128 MRNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       128 ~~ig~v~q~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      +.+||++|++.         +.+.++.... ....+....+.+.++.+++. ...+..+.+ |+||+||++||++++ +|
T Consensus        84 ~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p  163 (288)
T PRK13643         84 KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEP  163 (288)
T ss_pred             hhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCC
Confidence            88999999752         1111111000 01111222455667777664 344666666 999999999999998 58


Q ss_pred             cEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .++|+| |+++.|...            +.+.++           ++||+|++++.|++.+.|++.+.+.
T Consensus       164 ~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        164 EVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            888888 999875321            112221           6799999999999999998887765

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.91  E-value=4.1e-24  Score=199.35  Aligned_cols=183  Identities=16%  Similarity=0.099  Sum_probs=133.5

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+....|..  ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+.  .+.+||
T Consensus        15 L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~   90 (375)
T PRK09452         15 VELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT   90 (375)
T ss_pred             EEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence            444555555532  34688888885 59999999999999999999999999997 9999999988765543  367999


Q ss_pred             cCCchH--------HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~--------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      +||+..        +.+.++..... ...+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| 
T Consensus        91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE  170 (375)
T PRK09452         91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE  170 (375)
T ss_pred             EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            999863        12222211111 1111223455677777777777777777 999999999999998 58888888 


Q ss_pred             CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          201 VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       201 pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |+++.|..             ++.+.+           ..+||+|++++.|++.+.|++.+++..
T Consensus       171 P~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~  235 (375)
T PRK09452        171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE  235 (375)
T ss_pred             CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99986532             111222           268999999999999999988887653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.91  E-value=8.7e-24  Score=190.05  Aligned_cols=182  Identities=16%  Similarity=0.126  Sum_probs=131.1

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .++...|... ..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||++|
T Consensus         7 ~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q   85 (277)
T PRK13652          7 RDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQ   85 (277)
T ss_pred             EEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEec
Confidence            4445555432 34789999985 59999999999999999999999999988 999999988765555567778999999


Q ss_pred             chH---------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          136 ERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       136 ~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                      ++.         +.+.++.... .........+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.++++| |+
T Consensus        86 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt  165 (277)
T PRK13652         86 NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPT  165 (277)
T ss_pred             CcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            852         1111111000 11111122345677777776666777777 999999999999998 58888888 99


Q ss_pred             CCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          203 GGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       203 ~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++.|..             .+.+.++           +.||++++++.|++.+.|++.+.+.
T Consensus       166 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  227 (277)
T PRK13652        166 AGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL  227 (277)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence            987532             1112221           6799999999999999888877664

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.1e-23  Score=189.94  Aligned_cols=185  Identities=16%  Similarity=0.054  Sum_probs=134.7

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRN  130 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~i  130 (283)
                      +.+.++++.|.. ....+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..  .....+++.+
T Consensus         6 l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i   84 (283)
T PRK13636          6 LKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV   84 (283)
T ss_pred             EEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence            455666666642 245889999985 59999999999999999999999999987 999999988742  2344567789


Q ss_pred             cccCCchHH---------HHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354          131 GALPEERIR---------AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       131 g~v~q~~~~---------~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l  198 (283)
                      ||+||++..         .+.++... .....+....+...++.+++....+..+.+ |+||+||+.||++|+ +|.+++
T Consensus        85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi  164 (283)
T PRK13636         85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV  164 (283)
T ss_pred             EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            999998621         11111100 011122223455677888777667777777 999999999999998 588888


Q ss_pred             Ee-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          199 ID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       199 lD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +| |+++.|...             +.+.++           .+||++++++.|++.+.|+..+.+.
T Consensus       165 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        165 LDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            88 999875321             112221           5799999999999999888877665

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.6e-23  Score=188.74  Aligned_cols=186  Identities=18%  Similarity=0.121  Sum_probs=134.1

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC----CcEEEEeecCCCCCHHHHHHh
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~----g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      +...+..+.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|+    |+|.+.+.++.......+++.
T Consensus         6 l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~   85 (282)
T PRK13640          6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREK   85 (282)
T ss_pred             EEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhh
Confidence            4455566666544445889999985 59999999999999999999999999875    799999988865555566778


Q ss_pred             ccccCCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354          130 NGALPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (283)
Q Consensus       130 ig~v~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~  197 (283)
                      +||++|++..         .+.++.... ....+....+.+.++.+++....+..+.. |+||+||+.||++++ +|.++
T Consensus        86 ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ll  165 (282)
T PRK13640         86 VGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKII  165 (282)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999998631         111111001 11112223455677777776666766666 999999999999998 58888


Q ss_pred             EEe-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          198 IID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       198 llD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++| |+++.|...             +.+.+          +..||++++++.|++.+.|++.+.+.
T Consensus       166 llDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        166 ILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            887 999865321             11222          25799999999999999888777655

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.90  E-value=6.1e-24  Score=184.44  Aligned_cols=177  Identities=18%  Similarity=0.079  Sum_probs=123.3

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      ++...|.......+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|+
T Consensus         5 ~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~   83 (220)
T cd03263           5 NLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQF   83 (220)
T ss_pred             eeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCc
Confidence            344445432245789999985 59999999999999999999999999987 9999988876543 34556779999997


Q ss_pred             hHHH--------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          137 RIRA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       137 ~~~~--------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                      +..+        +.+..... ....+....+.+.++.+.+....+..+.+ |+||+||++||++++ +|.++++| |+++
T Consensus        84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~  163 (220)
T cd03263          84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG  163 (220)
T ss_pred             CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence            5311        11111000 01111122345567777666656666666 999999999999998 58888888 9998


Q ss_pred             CCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChH
Q 023354          205 DKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADL  236 (283)
Q Consensus       205 ~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~  236 (283)
                      .|....           ...+           ..+||++++++.|++...|++.
T Consensus       164 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~  217 (220)
T cd03263         164 LDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ  217 (220)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence            764211           0111           1579999999999998876654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.90  E-value=7.6e-24  Score=192.78  Aligned_cols=181  Identities=20%  Similarity=0.182  Sum_probs=128.2

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ..+++..|..  ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ....++.+||+|
T Consensus         7 ~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~   83 (303)
T TIGR01288         7 LVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVP   83 (303)
T ss_pred             EEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEe
Confidence            3444445532  35789999985 49999999999999999999999999987 9999998877543 345567899999


Q ss_pred             CchH--------HHHHh-CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          135 EERI--------RAVET-GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       135 q~~~--------~~i~~-~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                      |++.        +.+.+ .........+....+.+.++.+.+....+..+.+ |+||+||+.||++++ +|.++++| |+
T Consensus        84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  163 (303)
T TIGR01288        84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT  163 (303)
T ss_pred             ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            9753        11111 1111111111122344567777766666777777 999999999999998 48888888 99


Q ss_pred             CCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          203 GGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       203 ~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++.|...            +.+.++           .+||++++++.|++...|++.+.+.
T Consensus       164 ~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  224 (303)
T TIGR01288       164 TGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID  224 (303)
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9976421            112221           5799999999999998887766543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.90  E-value=6.2e-24  Score=183.96  Aligned_cols=149  Identities=17%  Similarity=0.122  Sum_probs=106.2

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhcccc
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGAL  133 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v  133 (283)
                      ++++.|.......+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|+
T Consensus         6 ~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~   85 (216)
T TIGR00960         6 QVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMV   85 (216)
T ss_pred             EEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEE
Confidence            344445433335788999985 59999999999999999999999999987 9999998877544332   356789999


Q ss_pred             CCchHHH--------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          134 PEERIRA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       134 ~q~~~~~--------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                      +|++..+        +.++.... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |
T Consensus        86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP  165 (216)
T TIGR00960        86 FQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEP  165 (216)
T ss_pred             ecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            9985311        11110000 01111223455677777776666666666 999999999999998 58888888 9


Q ss_pred             CCCCCc
Q 023354          202 SGGDKI  207 (283)
Q Consensus       202 t~g~~l  207 (283)
                      +++.|.
T Consensus       166 t~~LD~  171 (216)
T TIGR00960       166 TGNLDP  171 (216)
T ss_pred             CCcCCH
Confidence            999764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.1e-23  Score=186.76  Aligned_cols=186  Identities=17%  Similarity=0.103  Sum_probs=133.2

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+..+.|.......+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|
T Consensus         8 l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   87 (269)
T PRK13648          8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGI   87 (269)
T ss_pred             EEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeE
Confidence            4555666666544345788999985 59999999999999999999999999987 999999988766555667778999


Q ss_pred             cCCchHH---------HHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          133 LPEERIR---------AVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       133 v~q~~~~---------~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ++|++..         .+.++..... ........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++|
T Consensus        88 v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD  167 (269)
T PRK13648         88 VFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD  167 (269)
T ss_pred             EEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            9998631         1111111011 1111122345567777766666666666 999999999999998 58888887


Q ss_pred             -CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       |+++.|..             .+.+.+          +..||++++++.|++.+.|++.+.+.
T Consensus       168 EPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  231 (269)
T PRK13648        168 EATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD  231 (269)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence             99986532             111222          13599999999999998888766655

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.9e-23  Score=187.28  Aligned_cols=187  Identities=16%  Similarity=0.066  Sum_probs=133.5

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .+...+..+.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++
T Consensus         7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~   86 (271)
T PRK13632          7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG   86 (271)
T ss_pred             EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence            34555666666544456889999985 59999999999999999999999999987 99999998886555556677899


Q ss_pred             ccCCchH-HH--------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          132 ALPEERI-RA--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       132 ~v~q~~~-~~--------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      |++|++. .+        +.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++++
T Consensus        87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL  166 (271)
T PRK13632         87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF  166 (271)
T ss_pred             EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999862 11        11110000 11111122345667777766666776766 999999999999998 5778777


Q ss_pred             e-CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          200 D-VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       200 D-pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      | |+++.|..             .+...+          +..||++++++.|++...|+..+.+.
T Consensus       167 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  231 (271)
T PRK13632        167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN  231 (271)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence            7 99986532             111122          25799999999999988777766554

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.90  E-value=2.5e-23  Score=185.23  Aligned_cols=182  Identities=21%  Similarity=0.214  Sum_probs=130.0

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      +....|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|+
T Consensus         7 ~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~   84 (258)
T PRK13548          7 NLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQH   84 (258)
T ss_pred             eEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccC
Confidence            34444432  35788999985 59999999999999999999999999987 9999998877655555666789999997


Q ss_pred             hH--------HHHHhCCCCCCC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-------CCcEEEE
Q 023354          137 RI--------RAVETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYIIYII  199 (283)
Q Consensus       137 ~~--------~~i~~~g~~~~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-------~~~l~ll  199 (283)
                      +.        +.+.++...... .......+.+.++.++.....+..+.+ |+||+||++||++++       +|.++++
T Consensus        85 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllL  164 (258)
T PRK13548         85 SSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL  164 (258)
T ss_pred             CcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence            53        112222111111 111222345667777766666777777 999999999999998       6888888


Q ss_pred             e-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHH
Q 023354          200 D-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       200 D-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                      | |+++.|...             +.+.++           .+||++++++.|.+...|+..+.+...
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  232 (258)
T PRK13548        165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE  232 (258)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhChH
Confidence            8 999865321             112221           589999999999998888777666543

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.90  E-value=6.5e-24  Score=197.28  Aligned_cols=183  Identities=17%  Similarity=0.089  Sum_probs=133.8

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-C--CcEEEEeecCCCCCHHHHHHhc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-K--YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~--g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +...+++..|..  ..++++++|.. +|++++|+|||||||||||++|+|+++| .  |+|.+.+.++....+  ..+.+
T Consensus         6 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~i   81 (362)
T TIGR03258         6 IRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGL   81 (362)
T ss_pred             EEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCE
Confidence            344455555532  35789999985 5999999999999999999999999987 5  999999988765443  34679


Q ss_pred             cccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          131 GALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       131 g~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      ||++|++.        +.+.++.... ....+....+.+.++.+++....++.+.+ |+||+||+++||+|+ +|.++|+
T Consensus        82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL  161 (362)
T TIGR03258        82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL  161 (362)
T ss_pred             EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999863        1122221111 11112223456678888887777888877 999999999999999 5888888


Q ss_pred             e-CCCCCCch-------------hhc-CCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          200 D-VSGGDKIP-------------RKG-GPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       200 D-pt~g~~l~-------------~~~-~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      | |+++.|..             ++. +.+           ..+||+|++++.|++.+.|++.+++..
T Consensus       162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~  229 (362)
T TIGR03258       162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA  229 (362)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            8 99986532             221 222           167999999999999999998887754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=8.6e-24  Score=189.81  Aligned_cols=182  Identities=18%  Similarity=0.083  Sum_probs=130.4

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHHHhccccCC
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPE  135 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q  135 (283)
                      ++.+.|.. ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ...+++.+||++|
T Consensus         6 ~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   84 (274)
T PRK13644          6 NVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQ   84 (274)
T ss_pred             EEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEE
Confidence            33444432 234889999985 59999999999999999999999999987 99999998876543 3456678999999


Q ss_pred             chHH-H--------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          136 ERIR-A--------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       136 ~~~~-~--------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                      ++.. +        +.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.|+++| |+
T Consensus        85 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  164 (274)
T PRK13644         85 NPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVT  164 (274)
T ss_pred             ChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            8531 1        11111111 11112223455667777776667777777 999999999999998 58888888 99


Q ss_pred             CCCCchh------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          203 GGDKIPR------------KGGPG----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       203 ~g~~l~~------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      ++.|...            ..+.+          +..||++++++.|++.+.|+..+.+..
T Consensus       165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  225 (274)
T PRK13644        165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD  225 (274)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence            9875321            11222          256999999999999988887766543

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.90  E-value=1.9e-23  Score=182.97  Aligned_cols=181  Identities=18%  Similarity=0.098  Sum_probs=126.4

Q ss_pred             ccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhc
Q 023354           58 PIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRN  130 (283)
Q Consensus        58 ~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~i  130 (283)
                      .+..+.|...  ..+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......   ..++.+
T Consensus         5 ~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   84 (233)
T cd03258           5 KNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRI   84 (233)
T ss_pred             ecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence            3444455432  125788999985 59999999999999999999999999987 9999999887655433   335679


Q ss_pred             cccCCchHH--------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          131 GALPEERIR--------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       131 g~v~q~~~~--------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      +|++|++..        .+.++.... .........+.+.++.++.....+..+.+ |+||+||++||++++ +|.++++
T Consensus        85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllL  164 (233)
T cd03258          85 GMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLC  164 (233)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            999998531        111110000 01111222445677777776666666666 999999999999998 5888888


Q ss_pred             e-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          200 D-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       200 D-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      | |+++.|...             +.+.++           .+||++++++.|++.+.++..+.
T Consensus       165 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (233)
T cd03258         165 DEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV  228 (233)
T ss_pred             cCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            8 999875321             112221           57999999999999887765443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.90  E-value=1.3e-23  Score=193.25  Aligned_cols=172  Identities=16%  Similarity=0.160  Sum_probs=125.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchH-----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI-----  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~-----  138 (283)
                      ..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|++|++.     
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  113 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP  113 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence            35788999985 49999999999999999999999999987 9999999988765543   34567999999862     


Q ss_pred             -----HHHHhCC--C-CCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          139 -----RAVETGG--C-PHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       139 -----~~i~~~g--~-~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                           +.+..+.  . ......+....+.+.|+.+++. ...+..+.+ ||||+||+.||++++ +|.++|+| |++++|
T Consensus       114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD  193 (331)
T PRK15079        114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD  193 (331)
T ss_pred             CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence                 1111110  0 0111122223455677777663 345666666 999999999999998 58888888 999876


Q ss_pred             ch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          207 IP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       207 l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ..             ++.+.++           .+||+|++++.|++++.|+..+++.
T Consensus       194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~  251 (331)
T PRK15079        194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYH  251 (331)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            32             1112221           5799999999999999888777654

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.90  E-value=6.9e-24  Score=197.84  Aligned_cols=179  Identities=17%  Similarity=0.088  Sum_probs=129.8

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .+....|..  ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+.  .+.+||++|
T Consensus         7 ~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~v~Q   82 (369)
T PRK11000          7 RNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQ   82 (369)
T ss_pred             EEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEEEeC
Confidence            344444432  34788899985 59999999999999999999999999987 9999999887654432  367999999


Q ss_pred             chH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          136 ERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       136 ~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                      ++.        +.+.++.... ....+....+.+.++.+++....++.+.+ |+||+||++|||+|+ +|.++|+| |++
T Consensus        83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts  162 (369)
T PRK11000         83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS  162 (369)
T ss_pred             CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            853        1222221101 11122223456678888777777777777 999999999999999 58888888 999


Q ss_pred             CCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          204 GDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       204 g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +.|...             +.+.+           ..+||++++++.|++.+.|++.+.+.
T Consensus       163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~  223 (369)
T PRK11000        163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  223 (369)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            865321             11222           16799999999999999888877764

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.90  E-value=6.2e-24  Score=197.21  Aligned_cols=197  Identities=18%  Similarity=0.200  Sum_probs=149.2

Q ss_pred             cccCCCCCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC
Q 023354           44 VYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK  121 (283)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~  121 (283)
                      .+....-..|.+.+.+++|+|.++ ++.+.+++|... |.+++|+||+|+||||++++|.+.+.-+ |.|.+++.|+...
T Consensus       527 ~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv  605 (790)
T KOG0056|consen  527 GAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV  605 (790)
T ss_pred             CCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH
Confidence            344444567889999999998764 478899999855 9999999999999999999999999865 9999999999988


Q ss_pred             CHHHHHHhccccCCchHHHHHhC------CCCCCChHHHHHHHH-HHHHH--ccccccCCCcccC-----CchHHHHHHH
Q 023354          122 EDGEFLMRNGALPEERIRAVETG------GCPHAAIREDISINL-GPLEE--LSNLFKADLLLCE-----SGGDNLAANF  187 (283)
Q Consensus       122 ~~~~~~~~ig~v~q~~~~~i~~~------g~~~~~~~~~~~~~~-~~l~~--l~~~~~~d~~i~e-----SgGq~q~~~i  187 (283)
                      ....+|..||+|||+...++++-      +.+..+..+-.+.+. ..+.+  +...+++...++|     |||+|||++|
T Consensus       606 t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAi  685 (790)
T KOG0056|consen  606 TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAI  685 (790)
T ss_pred             HHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHH
Confidence            88889999999999987665543      233333322222111 11221  2335677777887     9999999999


Q ss_pred             HHHhc-CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          188 SRELA-DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       188 a~al~-~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      ||.+. +|.++++| +|+..|.+.+.                     ..++-.||.|++++.|.+++.|..++.+.+
T Consensus       686 ARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r  762 (790)
T KOG0056|consen  686 ARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR  762 (790)
T ss_pred             HHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence            99988 58888888 77776543211                     123468999999999999999988776653

>PLN03130 ABC transporter C family member; Provisional

Probab=99.90  E-value=6.6e-24  Score=227.75  Aligned_cols=187  Identities=16%  Similarity=0.142  Sum_probs=143.6

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .|.+.+.++++.|.++..+++++++|..+ |++|||+|++|||||||+++|+|++.|+ |+|.+++.|+.+.+..++|++
T Consensus      1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130       1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred             CCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence            46799999999998766679999999965 9999999999999999999999999988 999999999999999999999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      +++|||++..+      +...+.. .+ .+++..+.+  .+.++.  ...++|..+.|     |+||+||++||||++ +
T Consensus      1315 IsiVpQdp~LF~GTIreNLd~~~~-~t-deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130       1315 LGIIPQAPVLFSGTVRFNLDPFNE-HN-DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred             cEEECCCCccccccHHHHhCcCCC-CC-HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence            99999998532      2112211 11 222222111  122221  23477888876     999999999999998 4


Q ss_pred             CcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +.|+++| ||+..|...          .. .          .++..||+|++++.|++.+.|++.+++.
T Consensus      1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1393 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            7777777 888765321          11 1          1246799999999999999999988775

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.4e-23  Score=189.66  Aligned_cols=183  Identities=16%  Similarity=0.093  Sum_probs=129.4

Q ss_pred             ccCCCCCCCC---CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC----CHHHHHH
Q 023354           58 PIYSPGYFSR---RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLM  128 (283)
Q Consensus        58 ~~~~~~~~~~---~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~----~~~~~~~  128 (283)
                      .+++..|...   ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...    ....+++
T Consensus         6 ~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   85 (287)
T PRK13641          6 ENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRK   85 (287)
T ss_pred             EEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHh
Confidence            3444555422   135889999985 49999999999999999999999999998 9999999887532    2345566


Q ss_pred             hccccCCchH---------HHHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          129 RNGALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       129 ~ig~v~q~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      .+||++|++.         +.+.++.... ....+....+.+.++.+++. ...+..+.+ |+||+||++||++++ +|.
T Consensus        86 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~  165 (287)
T PRK13641         86 KVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPE  165 (287)
T ss_pred             ceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            7999999852         1111111001 11112223455677777765 455677777 999999999999998 588


Q ss_pred             EEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          196 IYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       196 l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++++| |+++.|...            +.+.++           .+||++++++.|++.+.|+..+.+.
T Consensus       166 lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        166 ILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            88888 999976421            112221           6899999999999998888776654

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.90  E-value=1.1e-23  Score=181.98  Aligned_cols=162  Identities=15%  Similarity=0.071  Sum_probs=114.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------  140 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++..+      
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~   90 (213)
T cd03259          13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVA   90 (213)
T ss_pred             eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHH
Confidence            35788999985 59999999999999999999999999987 999998887764332  345799999986311      


Q ss_pred             --HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354          141 --VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-----  209 (283)
Q Consensus       141 --i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-----  209 (283)
                        +.++.... .........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...     
T Consensus        91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~  170 (213)
T cd03259          91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR  170 (213)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence              11111000 01111122345667777766666666666 999999999999998 58888888 999976421     


Q ss_pred             --------hcCCcc-----------cccCEEEEEcCCccccc
Q 023354          210 --------KGGPGI-----------TQADLLVINKTDLASAI  232 (283)
Q Consensus       210 --------~~~~~i-----------~~ad~ivi~K~g~i~~~  232 (283)
                              +.+.++           .+||++++++.|++.+.
T Consensus       171 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~  212 (213)
T cd03259         171 EELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV  212 (213)
T ss_pred             HHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence                    112221           56889998888887653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.90  E-value=8.5e-24  Score=185.43  Aligned_cols=169  Identities=23%  Similarity=0.172  Sum_probs=121.9

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccCCchH--------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~--------  138 (283)
                      ..+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+ +..++|++|++.        
T Consensus        14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   93 (236)
T cd03219          14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL   93 (236)
T ss_pred             EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence            4788899985 59999999999999999999999999987 999999888766555444 346999999753        


Q ss_pred             HHHHhCCCCC-C----------ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          139 RAVETGGCPH-A----------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       139 ~~i~~~g~~~-~----------~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                      +.+.++.... .          ...+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  173 (236)
T cd03219          94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG  173 (236)
T ss_pred             HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            1122211100 0          0111223455677777776666777767 999999999999998 58888888 9998


Q ss_pred             CCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          205 DKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       205 ~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      .|...            +.+.++           .+||++++++.|++...|+..+.
T Consensus       174 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  230 (236)
T cd03219         174 LNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV  230 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence            75321            112221           57999999999999887766544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.4e-23  Score=186.00  Aligned_cols=187  Identities=17%  Similarity=0.107  Sum_probs=134.1

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .+...++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++
T Consensus        11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   88 (265)
T PRK10575         11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA   88 (265)
T ss_pred             eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence            3555566666643  35789999984 59999999999999999999999999987 99999988876555566677899


Q ss_pred             ccCCchH--------HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          132 ALPEERI--------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      |++|++.        +.+.++.+...     ........+.+.++.+......+..+.+ |+||+||+.+|++++ +|.|
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  168 (265)
T PRK10575         89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC  168 (265)
T ss_pred             EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            9998742        12222211100     0011223445677777766666777777 999999999999998 5888


Q ss_pred             EEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHH
Q 023354          197 YIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       197 ~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                      +++| |+++.|...             ..+.++           ..||++++++.|++...++..+.....
T Consensus       169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~~  239 (265)
T PRK10575        169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE  239 (265)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCHH
Confidence            8888 999875321             112221           679999999999998888776665543

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.3e-23  Score=186.11  Aligned_cols=190  Identities=21%  Similarity=0.181  Sum_probs=134.6

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ..++...|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+|
T Consensus        10 i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~   87 (265)
T PRK10253         10 GEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA   87 (265)
T ss_pred             EEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEee
Confidence            3444555542  34788999984 59999999999999999999999999987 99999988876666666677899999


Q ss_pred             CchH--------HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          135 EERI--------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       135 q~~~--------~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      |++.        +.+.++.....     ........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++
T Consensus        88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll  167 (265)
T PRK10253         88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL  167 (265)
T ss_pred             ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEE
Confidence            9753        12222211110     0111222445667777666666777777 999999999999998 4888888


Q ss_pred             e-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcC
Q 023354          200 D-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRD  248 (283)
Q Consensus       200 D-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~  248 (283)
                      | |+++.|..             .+.+.+           ..+||++++++.|++...|+..+.+........+
T Consensus       168 DEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~  241 (265)
T PRK10253        168 DEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY  241 (265)
T ss_pred             eCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhhHHHHHHHh
Confidence            8 99987532             111222           1679999999999999888877765544333333

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=1.7e-23  Score=192.28  Aligned_cols=171  Identities=13%  Similarity=0.141  Sum_probs=124.4

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC----C-CcEEEEeecCCCCCHHHHH----HhccccCCchHH
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFL----MRNGALPEERIR  139 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~----~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~~  139 (283)
                      .++++++|... |++++|+|+||||||||+++|+|++++    + |+|.+.+.++......+++    +.++|+||++..
T Consensus        21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~  100 (326)
T PRK11022         21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT  100 (326)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence            47899999855 999999999999999999999999873    5 9999999998776654443    259999998631


Q ss_pred             ----------HHHhCC--CCCCChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          140 ----------AVETGG--CPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       140 ----------~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                                .+....  .......+....+.+.|+.+++..   ..+..+.+ ||||+||+.||++++ +|.|+++| |
T Consensus       101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEP  180 (326)
T PRK11022        101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP  180 (326)
T ss_pred             hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence                      110000  000111222335566788777643   34556666 999999999999998 58888888 9


Q ss_pred             CCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          202 SGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       202 t~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |++.|..             ++.+.++           .+||+|++++.|++++.|+..+++.
T Consensus       181 ts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~  243 (326)
T PRK11022        181 TTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR  243 (326)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence            9987532             1112221           6899999999999999988877764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.90  E-value=9.2e-24  Score=208.41  Aligned_cols=181  Identities=16%  Similarity=0.097  Sum_probs=137.8

Q ss_pred             CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+.+.+++|.|+.+ .+.+++++|..+ |++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.+
T Consensus       339 ~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i  417 (592)
T PRK10790        339 GRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV  417 (592)
T ss_pred             CeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            568888999998743 468999999955 9999999999999999999999999998 9999999999988999999999


Q ss_pred             cccCCchHHH------HHhCCCCCCChHHHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354          131 GALPEERIRA------VETGGCPHAAIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSRELA  192 (283)
Q Consensus       131 g~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al~  192 (283)
                      +|+||++..+      +.+.+.+ .+ .+.+   .++++.++       ...++|..+.|     ||||+||+++||+++
T Consensus       418 ~~v~Q~~~lF~~Ti~~NI~~~~~-~~-d~~i---~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl  492 (592)
T PRK10790        418 AMVQQDPVVLADTFLANVTLGRD-IS-EEQV---WQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV  492 (592)
T ss_pred             EEEccCCccccchHHHHHHhCCC-CC-HHHH---HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            9999997522      2222222 11 2222   22332222       23466777766     999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHH
Q 023354          193 -DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                       ++.|+++| ||++.|...+           ...          .+..||+|+++..|++.+.|+..+.+
T Consensus       493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~  562 (592)
T PRK10790        493 QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL  562 (592)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence             47777777 9998653211           011          13679999999999999999887765

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.9e-23  Score=186.88  Aligned_cols=186  Identities=16%  Similarity=0.034  Sum_probs=133.3

Q ss_pred             cccccCCCCCCCC----CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHH
Q 023354           55 SHEPIYSPGYFSR----RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFL  127 (283)
Q Consensus        55 ~~~~~~~~~~~~~----~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~  127 (283)
                      +.+.+.++.|...    ..+++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...++
T Consensus         5 l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~   84 (280)
T PRK13633          5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIR   84 (280)
T ss_pred             EEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHh
Confidence            3445566666542    235899999985 49999999999999999999999999987 99999998876432 34567


Q ss_pred             HhccccCCchHHH---------HHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          128 MRNGALPEERIRA---------VETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       128 ~~ig~v~q~~~~~---------i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      +.+||+||++...         +.++..... ...+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.
T Consensus        85 ~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~  164 (280)
T PRK13633         85 NKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPE  164 (280)
T ss_pred             hheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            7899999986311         111111101 1111223455677777777767777777 999999999999998 588


Q ss_pred             EEEEe-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          196 IYIID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       196 l~llD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++++| |+++.|...             +.+.+          +..||++++++.|++...|++.+.+.
T Consensus       165 llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (280)
T PRK13633        165 CIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK  233 (280)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence            88888 999875321             11222          14599999999999998888777654

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=6.2e-24  Score=179.29  Aligned_cols=174  Identities=16%  Similarity=0.133  Sum_probs=123.8

Q ss_pred             CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc--C----CCcEEEEeecCCCC--CHHHHHHhccccCCchH
Q 023354           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR--D----KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI  138 (283)
Q Consensus        68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~--~----~g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~  138 (283)
                      ...++.++++..+ +.+++||||+||||||||+++..+..  |    +|+|.+.+.++...  +..++|+++|+|||.|.
T Consensus        19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn   98 (253)
T COG1117          19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN   98 (253)
T ss_pred             chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence            4568889999865 99999999999999999999998754  2    38999999999764  57899999999999874


Q ss_pred             -------HHHHhCCCCCCChHHHHH-HHHHHHHHccccc----cC-CCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          139 -------RAVETGGCPHAAIREDIS-INLGPLEELSNLF----KA-DLLLCESGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       139 -------~~i~~~g~~~~~~~~~~~-~~~~~l~~l~~~~----~~-d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                             +.+.+|...+......+. .+...|....+.+    .+ +....-||||+||++|||+++ .|.|+|+| |++
T Consensus        99 PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtS  178 (253)
T COG1117          99 PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS  178 (253)
T ss_pred             CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCccc
Confidence                   334444332222112222 2333444333322    12 222334999999999999999 58888888 999


Q ss_pred             CCCch-------------hhcCCc---------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          204 GDKIP-------------RKGGPG---------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       204 g~~l~-------------~~~~~~---------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      .+|..             +++...         .+.+|...+...|.+++.|+..+.|..
T Consensus       179 ALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~  238 (253)
T COG1117         179 ALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN  238 (253)
T ss_pred             ccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence            86531             121111         278899999999999999988888764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.90  E-value=2.4e-23  Score=208.92  Aligned_cols=188  Identities=15%  Similarity=0.142  Sum_probs=141.0

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.+++|.|+++..+.+++++|.. +|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus       453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~  532 (694)
T TIGR01846       453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ  532 (694)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence            4668889999999877667899999985 49999999999999999999999999987 999999999999998999999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      ++||+|++..+      +..-+.+..+. +.+..+.+  .+.++.  ...+++..+.+     ||||+||+++||+++ +
T Consensus       533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~-~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~  611 (694)
T TIGR01846       533 MGVVLQENVLFSRSIRDNIALCNPGAPF-EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN  611 (694)
T ss_pred             CeEEccCCeehhhhHHHHHhcCCCCCCH-HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence            99999997422      22223333322 22221111  122221  23356777665     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.++++| ||++.|...+           .+.          .++.||+|++++.|++.+.|+..+.+.
T Consensus       612 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~  680 (694)
T TIGR01846       612 PRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA  680 (694)
T ss_pred             CCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence            7777777 9998653211           111          136799999999999999998776653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.90  E-value=5e-24  Score=191.28  Aligned_cols=184  Identities=14%  Similarity=0.115  Sum_probs=131.5

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      .+.+.++.+.|+....+.+++++|..+ |++++|+|+||||||||+++|+|++.+.|+|.+++.++...+...+++.++|
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGV   81 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEE
Confidence            345667777777655678999999865 9999999999999999999999999856999999999877777788889999


Q ss_pred             cCCchHHHHHh---CCCCCC-ChHHHHHHHHHHHHHccccc-------cCCCcccC-----CchHHHHHHHHHHhc-CCc
Q 023354          133 LPEERIRAVET---GGCPHA-AIREDISINLGPLEELSNLF-------KADLLLCE-----SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       133 v~q~~~~~i~~---~g~~~~-~~~~~~~~~~~~l~~l~~~~-------~~d~~i~e-----SgGq~q~~~ia~al~-~~~  195 (283)
                      +||++..+..+   .-.+.. ...+   .+.+.++.+++..       .++..+.+     |+||+||+++||+++ +|.
T Consensus        82 v~q~~~lf~~tv~~nl~~~~~~~~~---~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~  158 (275)
T cd03289          82 IPQKVFIFSGTFRKNLDPYGKWSDE---EIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK  158 (275)
T ss_pred             ECCCcccchhhHHHHhhhccCCCHH---HHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            99987422110   000111 1111   2233444443322       22333322     999999999999998 588


Q ss_pred             EEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          196 IYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       196 l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |+++| |+++.|....           ...+          +..||+|++++.|++.+.|++.+++.
T Consensus       159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence            88887 9998653211           1111          25699999999999999999887765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.90  E-value=3e-23  Score=180.24  Aligned_cols=165  Identities=21%  Similarity=0.158  Sum_probs=119.0

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------  139 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++..        
T Consensus        14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~   92 (220)
T cd03265          14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSVDDELTGWE   92 (220)
T ss_pred             EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccccccCcHHH
Confidence            4788899985 59999999999999999999999999987 999998877654 234556779999998631        


Q ss_pred             HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354          140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------  209 (283)
Q Consensus       140 ~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------  209 (283)
                      .+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|...      
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~  172 (220)
T cd03265          93 NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE  172 (220)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence            111110000 11111222455677777776666777777 999999999999998 58888888 999865321      


Q ss_pred             -------hcCCcc-----------cccCEEEEEcCCcccccCCh
Q 023354          210 -------KGGPGI-----------TQADLLVINKTDLASAIGAD  235 (283)
Q Consensus       210 -------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~  235 (283)
                             +.+.++           .+||++++++.|++...+++
T Consensus       173 ~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~  216 (220)
T cd03265         173 YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP  216 (220)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCCh
Confidence                   112221           57999999999999876654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=2.1e-23  Score=194.87  Aligned_cols=182  Identities=15%  Similarity=0.080  Sum_probs=133.5

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+....|..  ..++++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....+  .++.+||
T Consensus        20 l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~   95 (377)
T PRK11607         20 LEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM   95 (377)
T ss_pred             EEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence            444555555532  34788899985 59999999999999999999999999987 999999988765443  3568999


Q ss_pred             cCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      +||++.        +.+.++.... ....+....+.+.++.+.+....++.+.+ |+||+||++|||+|+ +|.++|+| 
T Consensus        96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE  175 (377)
T PRK11607         96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE  175 (377)
T ss_pred             EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            999863        2222221111 11112223455677888777777777777 999999999999999 58888888 


Q ss_pred             CCCCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 VSGGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 pt~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |+++.|...             +.+.+           ..+||++++++.|++.+.|++.+.+.
T Consensus       176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~  239 (377)
T PRK11607        176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE  239 (377)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence            999865321             11222           26899999999999999999888765

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.9e-23  Score=189.82  Aligned_cols=172  Identities=15%  Similarity=0.110  Sum_probs=127.9

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchHH----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR----  139 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~----  139 (283)
                      ..++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...+..   .+++.++|+||++..    
T Consensus        28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  107 (327)
T PRK11308         28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP  107 (327)
T ss_pred             eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence            35789999985 49999999999999999999999999987 9999999988766543   355679999998631    


Q ss_pred             ------HHHhCC--CCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          140 ------AVETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       140 ------~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                            .+....  .......+....+.+.|+.+++. ..++..+.+ ||||+||++||++|+ +|.++++| ||++.|.
T Consensus       108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~  187 (327)
T PRK11308        108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV  187 (327)
T ss_pred             ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence                  111100  00111222334566778888774 356777777 999999999999998 58888888 9998753


Q ss_pred             h-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          208 P-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       208 ~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .             ++.+.++           .+||+|++++.|++++.|+..+++.
T Consensus       188 ~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~  244 (327)
T PRK11308        188 SVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFN  244 (327)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            2             1112221           5799999999999999998877765

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.90  E-value=1.8e-23  Score=181.68  Aligned_cols=167  Identities=19%  Similarity=0.125  Sum_probs=116.5

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccCCchHH-------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERIR-------  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~~-------  139 (283)
                      ..+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..++ ++.++|++|++..       
T Consensus        14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   93 (222)
T cd03224          14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE   93 (222)
T ss_pred             eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence            5788899985 59999999999999999999999999987 999999988766555444 4569999998631       


Q ss_pred             -HHHhCCCCCCChHHHHHHHHHHHHHc-cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh----
Q 023354          140 -AVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK----  210 (283)
Q Consensus       140 -~i~~~g~~~~~~~~~~~~~~~~l~~l-~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~----  210 (283)
                       .+.+...... ..+....+.+.++.+ ......+..+.+ |+||+||+++|++++ +|.++++| |+++.|....    
T Consensus        94 ~~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  172 (222)
T cd03224          94 ENLLLGAYARR-RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF  172 (222)
T ss_pred             HHHHHHhhhcC-chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHH
Confidence             1111111110 011111223344544 234445666666 999999999999998 58888888 9998653211    


Q ss_pred             --------cCCc-----------ccccCEEEEEcCCcccccCChHH
Q 023354          211 --------GGPG-----------ITQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       211 --------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                              .+.+           ..+||++++++.|++...++..+
T Consensus       173 ~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  218 (222)
T cd03224         173 EAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE  218 (222)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence                    1122           16799999999999987766544

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.90  E-value=2.2e-23  Score=204.79  Aligned_cols=188  Identities=19%  Similarity=0.172  Sum_probs=139.5

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|++...+.+++++|.. +|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus       328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~  407 (571)
T TIGR02203       328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ  407 (571)
T ss_pred             CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence            3568889999999876667899999985 59999999999999999999999999998 999999999988888889999


Q ss_pred             ccccCCchHH------HHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIR------AVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      ++|+||++..      .+.+.+.+.....+.+..+.+  .+.++.  ...++|..+.+     ||||+||+++||+++ +
T Consensus       408 i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~  487 (571)
T TIGR02203       408 VALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD  487 (571)
T ss_pred             ceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            9999999852      222333321111222222111  222221  23456777765     999999999999998 4


Q ss_pred             CcEEEEe-CCCCCCchh----------h-cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          194 YIIYIID-VSGGDKIPR----------K-GGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~----------~-~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +.|+++| ||++.|...          . ...+          +..||+|+.++.|++.+.|+..+.+
T Consensus       488 ~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       488 APILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            7777776 999865321          1 1111          3789999999999999888877654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.90  E-value=1.6e-23  Score=184.22  Aligned_cols=177  Identities=18%  Similarity=0.093  Sum_probs=123.1

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .++.+.|..  ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|
T Consensus         6 ~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q   81 (239)
T cd03296           6 RNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQ   81 (239)
T ss_pred             EeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEec
Confidence            344445533  35788999984 59999999999999999999999999987 999998887654332  2357999999


Q ss_pred             chHH--------HHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          136 ERIR--------AVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       136 ~~~~--------~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ++..        .+.++.....     ...+....+.+.++.++.....+..+.+ |+||+||++||++++ +|.++++|
T Consensus        82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  161 (239)
T cd03296          82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD  161 (239)
T ss_pred             CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            8531        1111111000     1111122345567777665555666666 999999999999998 58888888


Q ss_pred             -CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          201 -VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       201 -pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                       |+++.|..             .+.+.++           .+||++++++.|++...|+..+.
T Consensus       162 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence             99986532             1112221           57999999999999887776544

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.90  E-value=2.1e-23  Score=180.77  Aligned_cols=139  Identities=22%  Similarity=0.145  Sum_probs=101.0

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH----HHHhccccCCchHH---
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNGALPEERIR---  139 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~----~~~~ig~v~q~~~~---  139 (283)
                      ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++..    .++.++|++|++..   
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD   96 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence            45788999985 59999999999999999999999999987 99999988776544322    34579999997531   


Q ss_pred             -----HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          140 -----AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       140 -----~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                           .+.++.... .........+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus        97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~  173 (218)
T cd03255          97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS  173 (218)
T ss_pred             CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCH
Confidence                 111111111 01111122445677777766656666666 999999999999998 58888888 9998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.90  E-value=4.6e-23  Score=183.15  Aligned_cols=182  Identities=19%  Similarity=0.212  Sum_probs=131.4

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++|++|++.        
T Consensus        14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (256)
T TIGR03873        14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVR   93 (256)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCCHH
Confidence            35788999984 59999999999999999999999999987 999999988776666566678999999752        


Q ss_pred             HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-
Q 023354          139 RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-  209 (283)
Q Consensus       139 ~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-  209 (283)
                      +.+.++.....     ...+....+.+.++.+......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|... 
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~  173 (256)
T TIGR03873        94 DVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ  173 (256)
T ss_pred             HHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence            11222211110     0112223455677777766666777767 999999999999998 58888888 999865321 


Q ss_pred             -----------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC
Q 023354          210 -----------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGG  250 (283)
Q Consensus       210 -----------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~  250 (283)
                                 +.+.++           .+||++++++.|++...|+..+.+........+..
T Consensus       174 ~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  236 (256)
T TIGR03873       174 LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYGV  236 (256)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhCHHHHHHHhCC
Confidence                       112221           67999999999999988887776665444444343

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.90  E-value=3.2e-23  Score=182.67  Aligned_cols=178  Identities=18%  Similarity=0.101  Sum_probs=124.6

Q ss_pred             CCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           60 YSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      +.+.|... ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++
T Consensus         6 l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   84 (242)
T cd03295           6 VTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI   84 (242)
T ss_pred             EEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCc
Confidence            33444432 34788899985 59999999999999999999999999987 99999988876555555667899999975


Q ss_pred             HH--------HHHhCCCCC-CChHHHHHHHHHHHHHccccc--cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          138 IR--------AVETGGCPH-AAIREDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       138 ~~--------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~--~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                      ..        .+.++.... ....+....+.+.++.++...  ..+..+.+ |+||+||++||++++ +|.++++| |++
T Consensus        85 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  164 (242)
T cd03295          85 GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFG  164 (242)
T ss_pred             cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence            31        111110000 011112234456677776653  44565666 999999999999998 58888888 999


Q ss_pred             CCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354          204 GDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       204 g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      +.|...             +.+.+           ..+||++++++.|++.+.++..+.
T Consensus       165 ~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  223 (242)
T cd03295         165 ALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI  223 (242)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            865321             11222           167999999999999887766544

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.90  E-value=6.7e-24  Score=227.38  Aligned_cols=186  Identities=17%  Similarity=0.139  Sum_probs=143.3

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .|.+.+.++++.|+++..+++++++|..+ |+++||+|++|||||||+++|++++.|+ |+|.+++.|+.+.+...+|++
T Consensus      1282 ~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~ 1361 (1522)
T TIGR00957      1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361 (1522)
T ss_pred             CCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhc
Confidence            46799999999998776789999999965 9999999999999999999999999988 999999999999999999999


Q ss_pred             ccccCCchHHHHHh---CCCCCC-ChHHHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354          130 NGALPEERIRAVET---GGCPHA-AIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSRELA-  192 (283)
Q Consensus       130 ig~v~q~~~~~i~~---~g~~~~-~~~~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al~-  192 (283)
                      ++++||++..+..+   +-.+.. ...+++   .++++...       ...++|..+.|     |+||+||++|||+++ 
T Consensus      1362 i~iVpQdp~LF~gTIr~NLdp~~~~sdeei---~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957      1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEV---WWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred             CeEECCCCcccCccHHHHcCcccCCCHHHH---HHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence            99999998532111   111111 112222   23333222       12467888876     999999999999998 


Q ss_pred             CCcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 DYIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++.|+++| ||+..|...          .. .          .++..||+|++++.|++++.|++.+++.
T Consensus      1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            47777777 888755321          11 1          1247899999999999999999987764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.90  E-value=2.3e-23  Score=171.85  Aligned_cols=160  Identities=18%  Similarity=0.120  Sum_probs=123.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhCCCCCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHA  149 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~g~~~~  149 (283)
                      ..|++++|+||+|||||||||+++|...|. |.|.+.+.|.....+.+  |-++++||+..        ..+.+|..|..
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSmlFQEnNLFaHLtV~qNigLGl~P~L  100 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSMLFQENNLFAHLTVAQNIGLGLSPGL  100 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhhhhccccchhhhhhhhhcccCCccc
Confidence            459999999999999999999999999987 99999999998776654  45788899864        23445555655


Q ss_pred             ChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC--CcEEEEeCCCCCCc-------------hhhcC
Q 023354          150 AIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD--YIIYIIDVSGGDKI-------------PRKGG  212 (283)
Q Consensus       150 ~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~--~~l~llDpt~g~~l-------------~~~~~  212 (283)
                      ... ++...+..++..+++....++...+ ||||+||+++||.++.  |++++++|.+..+.             ..+.+
T Consensus       101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~  180 (231)
T COG3840         101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK  180 (231)
T ss_pred             ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC
Confidence            443 3344666788888888888888888 9999999999999994  55555559887542             12222


Q ss_pred             Cc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          213 PG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       213 ~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .+           .+.++++++...|++.+.|+..+.+.
T Consensus       181 ~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~  219 (231)
T COG3840         181 MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS  219 (231)
T ss_pred             CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence            22           27899999999999999988777665

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.90  E-value=1.9e-23  Score=222.37  Aligned_cols=189  Identities=20%  Similarity=0.163  Sum_probs=143.4

Q ss_pred             CCCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC---------------------
Q 023354           51 LAPHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD---------------------  107 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~---------------------  107 (283)
                      ..+.+.+.+++|.|+.+. .+.+++++|..+ |++++|+||+|||||||+++|+|++.|                     
T Consensus      1162 ~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265       1162 IKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred             CCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence            346799999999999754 478999999955 999999999999999999999999997                     


Q ss_pred             ---------------------------------C-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------HHhCCCC
Q 023354          108 ---------------------------------K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------VETGGCP  147 (283)
Q Consensus       108 ---------------------------------~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------i~~~g~~  147 (283)
                                                       + |+|.+++.++..++...+|+.++||+|++..+      +...|.+
T Consensus      1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265       1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred             cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence                                             4 99999999999999999999999999998522      2223434


Q ss_pred             CCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--------
Q 023354          148 HAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--------  208 (283)
Q Consensus       148 ~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--------  208 (283)
                      ..+. +++..+.+  .+.++  .+..++|..++|     ||||+||++|||||+ +|.|+|+| ||+..|..        
T Consensus      1322 ~at~-eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265       1322 DATR-EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred             CCCH-HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence            3332 22222111  22232  234678888887     999999999999998 58888888 99875421        


Q ss_pred             --hh---cCCc----------ccccCEEEEEcC----Cccc-ccCChHHHHh
Q 023354          209 --RK---GGPG----------ITQADLLVINKT----DLAS-AIGADLAVME  240 (283)
Q Consensus       209 --~~---~~~~----------i~~ad~ivi~K~----g~i~-~~g~~~e~~~  240 (283)
                        ..   .+.+          ++.||+|++++.    |+++ +.|+..+++.
T Consensus      1401 L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence              11   1112          478999999998    8854 7898877764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=5.1e-23  Score=184.42  Aligned_cols=181  Identities=13%  Similarity=0.063  Sum_probs=126.8

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhcccc
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGAL  133 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v  133 (283)
                      .++++.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..  .....+++.++|+
T Consensus         5 ~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v   82 (271)
T PRK13638          5 SDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATV   82 (271)
T ss_pred             EEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEE
Confidence            344445532  35789999985 59999999999999999999999999987 999999988742  2234556789999


Q ss_pred             CCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          134 PEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       134 ~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      +|++..         .+.++.... ....+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| 
T Consensus        83 ~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE  162 (271)
T PRK13638         83 FQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE  162 (271)
T ss_pred             eeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            998531         111110000 11111122344567776665556666666 999999999999998 58888888 


Q ss_pred             CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          201 VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |+++.|...            +.+.++           .+||++++++.|++.+.|++.+.+.
T Consensus       163 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  225 (271)
T PRK13638        163 PTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA  225 (271)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            999865321            112221           6799999999999998888776655

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.90  E-value=1.9e-23  Score=182.71  Aligned_cols=170  Identities=19%  Similarity=0.152  Sum_probs=121.0

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccCCchH--------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~--------  138 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+ ++.++|++|++.        
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (232)
T cd03218          14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVE   93 (232)
T ss_pred             EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHH
Confidence            4788999984 59999999999999999999999999987 999998887765544443 346999999753        


Q ss_pred             HHHHhCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354          139 RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-----  209 (283)
Q Consensus       139 ~~i~~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-----  209 (283)
                      +.+.+........ .+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...     
T Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~  173 (232)
T cd03218          94 ENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ  173 (232)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence            1111111001111 11122345567777666656666666 999999999999998 58888888 999875321     


Q ss_pred             -------hcCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          210 -------KGGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       210 -------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                             +.+.+           ..+||++++++.|++...++..+.+
T Consensus       174 ~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  221 (232)
T cd03218         174 KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA  221 (232)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence                   11222           1679999999999998877665543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.90  E-value=3.2e-23  Score=194.54  Aligned_cols=171  Identities=16%  Similarity=0.109  Sum_probs=125.8

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhccccCCchH-----
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERI-----  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~-----  138 (283)
                      .++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+    ++.+||++|++.     
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            4789999985 59999999999999999999999999997 999999998876554433    246999999753     


Q ss_pred             ---HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch---
Q 023354          139 ---RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP---  208 (283)
Q Consensus       139 ---~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~---  208 (283)
                         +.+.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.|||+++ +|.++|+| |+++.|..   
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~  201 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT  201 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence               1122211100 01112223456678888777667777777 999999999999998 58888888 99986532   


Q ss_pred             ----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 ----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 ----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                .+.+.+           ..+||++++++.|++...|++.+.+.
T Consensus       202 ~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~  254 (400)
T PRK10070        202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN  254 (400)
T ss_pred             HHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence                      111222           16799999999999998887766554

>PLN03232 ABC transporter C family member; Provisional

Probab=99.90  E-value=1.3e-23  Score=224.87  Aligned_cols=184  Identities=15%  Similarity=0.144  Sum_probs=142.4

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .|.+.+.++++.|.++..+++++++|..+ |+++||+|++|||||||+++|+|++.|+ |+|.+++.|+.+.+...+|++
T Consensus      1232 ~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~ 1311 (1495)
T PLN03232       1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311 (1495)
T ss_pred             CCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhh
Confidence            46789999999997766779999999955 9999999999999999999999999998 999999999999999999999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHh
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSREL  191 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al  191 (283)
                      +++|||++..+      +...+. ..+ .+++   .++++...       ...++|..+.|     |||||||++|||++
T Consensus      1312 i~iVpQdp~LF~gTIr~NL~~~~-~~s-deei---~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARAL 1386 (1495)
T PLN03232       1312 LSIIPQSPVLFSGTVRFNIDPFS-EHN-DADL---WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARAL 1386 (1495)
T ss_pred             cEEECCCCeeeCccHHHHcCCCC-CCC-HHHH---HHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence            99999998522      222221 111 2222   23333221       23467877776     99999999999999


Q ss_pred             cC-CcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354          192 AD-YIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       192 ~~-~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +. +.|+++| ||+..|...          .. .          .++..||+|++++.|++++.|++.+++.
T Consensus      1387 Lr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232       1387 LRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            84 7777777 888765321          10 1          1247799999999999999999988764

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=3.6e-23  Score=187.11  Aligned_cols=189  Identities=13%  Similarity=0.063  Sum_probs=130.6

Q ss_pred             CCccccccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC----C-
Q 023354           52 APHSHEPIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----K-  121 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----~-  121 (283)
                      .+++...+.+..|....   .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..    . 
T Consensus         4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence            45566666666665432   25789999985 59999999999999999999999999987 999998887642    1 


Q ss_pred             CHHHHHHhccccCCchHH---------HHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHH
Q 023354          122 EDGEFLMRNGALPEERIR---------AVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       122 ~~~~~~~~ig~v~q~~~~---------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~  189 (283)
                      ....+++.++|++|++..         .+.++.... ....+....+.+.++.+.+. ...+..+.+ |+||+||+.||+
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar  163 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG  163 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence            234456679999998521         111111000 11111122344566666653 345666666 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          190 ELA-DYIIYIID-VSGGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +++ +|.++++| |+++.|...             ..+.+           .++||++++++.|++...|+..+.+.
T Consensus       164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  240 (289)
T PRK13645        164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS  240 (289)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            998 58888888 999865321             11222           16799999999999988887766554

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.89  E-value=7.2e-23  Score=181.21  Aligned_cols=171  Identities=15%  Similarity=0.104  Sum_probs=124.0

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchH--------HHH
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i  141 (283)
                      .+++++|.. +|++++|+|+||||||||+++|+|++++.|+|.+.+.++.......+++.++|++|++.        +.+
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl   90 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL   90 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence            578888884 59999999999999999999999998666999999988876566666677999998752        122


Q ss_pred             HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc--------CCcEEEEe-CCCCCCchh--
Q 023354          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPR--  209 (283)
Q Consensus       142 ~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~--------~~~l~llD-pt~g~~l~~--  209 (283)
                      .+.........+....+.+.++.++.....+..+.+ |+||+||+.||++++        +|.++++| |+++.|...  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~  170 (248)
T PRK03695         91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA  170 (248)
T ss_pred             HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence            222111111112223455677777766666666666 999999999999998        44777777 999875321  


Q ss_pred             ----------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          210 ----------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       210 ----------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                                +.+.+           ..+||++++++.|++.+.|+..+.+..
T Consensus       171 ~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  223 (248)
T PRK03695        171 ALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP  223 (248)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence                      11122           168999999999999988877665543

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.89  E-value=4.3e-23  Score=203.54  Aligned_cols=185  Identities=19%  Similarity=0.192  Sum_probs=137.3

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+.+.+++|.|+.. .+.++++++.. +|++++|+|++|||||||+++|+|+++|+ |.|.+++.++...+...+++.+
T Consensus       333 ~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i  411 (588)
T PRK13657        333 GAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI  411 (588)
T ss_pred             CeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence            457888999999743 45799999985 59999999999999999999999999998 9999999999999989999999


Q ss_pred             cccCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354          131 GALPEERI------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       131 g~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~  194 (283)
                      +|+||++.      ..+.+.+.+..+ .+.+..+.+  .+..+.  ...++|..+.+     ||||+||+++||+++ ++
T Consensus       412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~-d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~  490 (588)
T PRK13657        412 AVVFQDAGLFNRSIEDNIRVGRPDAT-DEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP  490 (588)
T ss_pred             EEEecCcccccccHHHHHhcCCCCCC-HHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999974      222222333332 222222211  122221  23456666655     999999999999998 47


Q ss_pred             cEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          195 IIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .++++| ||++.|...+           ...+          ++.||+|++++.|.+.+.|+..+.+
T Consensus       491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~  557 (588)
T PRK13657        491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV  557 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            777777 9998653211           1111          3789999999999999988876654

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=4.1e-23  Score=183.40  Aligned_cols=190  Identities=22%  Similarity=0.207  Sum_probs=132.8

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .+..+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++|++|
T Consensus         6 ~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   83 (255)
T PRK11231          6 ENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQ   83 (255)
T ss_pred             EeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecc
Confidence            344455532  35788999984 59999999999999999999999999987 999998887765555566678999999


Q ss_pred             chH--------HHHHhCCCCC----CC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          136 ERI--------RAVETGGCPH----AA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       136 ~~~--------~~i~~~g~~~----~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ++.        +.+.++....    .. .......+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++|
T Consensus        84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  163 (255)
T PRK11231         84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD  163 (255)
T ss_pred             cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            753        1222221110    00 011222345566766666556666766 999999999999998 58888888


Q ss_pred             -CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC
Q 023354          201 -VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDG  249 (283)
Q Consensus       201 -pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~  249 (283)
                       |+++.|...            +.+.+           .++||++++++.|++...|+..+.+........+.
T Consensus       164 EP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~  236 (255)
T PRK11231        164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFD  236 (255)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCHHHHHHHhC
Confidence             999875321            11222           16799999999999988887776665444344433

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.89  E-value=2.8e-23  Score=188.91  Aligned_cols=170  Identities=16%  Similarity=0.097  Sum_probs=125.5

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ..++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.+||+||++.        
T Consensus        15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~l~~~~tv~   93 (301)
T TIGR03522        15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVR   93 (301)
T ss_pred             EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCCCCCCCcHH
Confidence            347899999855 9999999999999999999999999998 999999988765 34456778999999853        


Q ss_pred             HHHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchhh----
Q 023354          139 RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPRK----  210 (283)
Q Consensus       139 ~~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~~----  210 (283)
                      +++.+.. .......+....+.+.++.+++....+..+.. |+||+||+.+|++++. |.++++| |++|.|....    
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~  173 (301)
T TIGR03522        94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIR  173 (301)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence            1121111 00001111123445677777777667777777 9999999999999994 8888888 9999764311    


Q ss_pred             -----c--CCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          211 -----G--GPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       211 -----~--~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                           .  ..++           ++||+|++++.|++.+.|+..+..
T Consensus       174 ~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~  220 (301)
T TIGR03522       174 NVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS  220 (301)
T ss_pred             HHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence                 1  1221           679999999999999988876653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.89  E-value=3.4e-23  Score=178.67  Aligned_cols=139  Identities=21%  Similarity=0.105  Sum_probs=102.0

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-H-----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-A-----  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~-----  140 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++|++|++.. +     
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~   93 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV   93 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence            45788999985 59999999999999999999999999987 9999998887655555667789999998521 1     


Q ss_pred             ---HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          141 ---VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       141 ---i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                         +.++.... .........+.+.++.+++....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus        94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~  167 (211)
T cd03225          94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDP  167 (211)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence               11110000 01111122344567777666556666666 999999999999998 58888888 9999764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=5.1e-23  Score=185.07  Aligned_cols=186  Identities=14%  Similarity=0.013  Sum_probs=132.6

Q ss_pred             cccccCCCCCCCCC-CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           55 SHEPIYSPGYFSRR-APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      +.+.++.+.|.... .+.+++++|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.+|
T Consensus         5 l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~   84 (277)
T PRK13642          5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIG   84 (277)
T ss_pred             EEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceE
Confidence            34455666665432 3578999998 459999999999999999999999999987 99999998876555556677899


Q ss_pred             ccCCchHH-H--------HHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          132 ALPEERIR-A--------VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       132 ~v~q~~~~-~--------i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      |++|++.. +        +.++... .....+....+...++.+++....+..+.+ |+||+||+.||++++ +|.++++
T Consensus        85 ~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llll  164 (277)
T PRK13642         85 MVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIIL  164 (277)
T ss_pred             EEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99998621 1        1111110 011111122345566766665556666666 999999999999998 5888888


Q ss_pred             e-CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          200 D-VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       200 D-pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      | |+++.|..             ++.+.+          +..||++++++.|++.+.|+..+.+.
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  229 (277)
T PRK13642        165 DESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA  229 (277)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            8 99986532             111222          25699999999999998888776664

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=2.8e-23  Score=186.51  Aligned_cols=181  Identities=19%  Similarity=0.117  Sum_probs=129.5

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhccccC
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALP  134 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~  134 (283)
                      ++.+.|.. ....+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..  .....+++.++|++
T Consensus         6 ~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~   84 (275)
T PRK13639          6 DLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVF   84 (275)
T ss_pred             EEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEe
Confidence            34444532 235788999985 49999999999999999999999999987 999999988742  12345667899999


Q ss_pred             CchH---------HHHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          135 EERI---------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       135 q~~~---------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                      |++.         +.+.++... .....+....+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.++++| |
T Consensus        85 q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP  164 (275)
T PRK13639         85 QNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP  164 (275)
T ss_pred             eChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            9852         111111100 011112223455677888777667777777 999999999999998 58888888 9


Q ss_pred             CCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          202 SGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       202 t~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +++.|...            +.+.++           ++||++++++.|.+.+.|+..+.+.
T Consensus       165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (275)
T PRK13639        165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS  226 (275)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99875321            112221           5799999999999999888777665

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.89  E-value=6.1e-23  Score=183.81  Aligned_cols=170  Identities=16%  Similarity=0.089  Sum_probs=121.3

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhccccCCchHH----
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRNGALPEERIR----  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~~----  139 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+    ++.++|++|++..    
T Consensus        38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  117 (269)
T cd03294          38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR  117 (269)
T ss_pred             eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence            4688999985 59999999999999999999999999987 999999887765443322    3469999997531    


Q ss_pred             ----HHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh--
Q 023354          140 ----AVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR--  209 (283)
Q Consensus       140 ----~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~--  209 (283)
                          .+.++. ............+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |+++.|...  
T Consensus       118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~  197 (269)
T cd03294         118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRR  197 (269)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence                111110 00001111122445677777776666777777 999999999999998 58888888 999865321  


Q ss_pred             -----------hcCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          210 -----------KGGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       210 -----------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                                 +.+.+           ..+||++++++.|++...|+..+.+
T Consensus       198 ~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  249 (269)
T cd03294         198 EMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL  249 (269)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence                       11222           1679999999999998877765554

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.89  E-value=2.9e-23  Score=179.95  Aligned_cols=172  Identities=17%  Similarity=0.086  Sum_probs=119.9

Q ss_pred             cCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           59 IYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        59 ~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ++++.|....  .+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++
T Consensus         6 ~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~   84 (218)
T cd03266           6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVS   84 (218)
T ss_pred             EEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEec
Confidence            4444554322  15788999985 59999999999999999999999999987 999998887754 3445667899999


Q ss_pred             CchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          135 EERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       135 q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                      |++.        +.+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+
T Consensus        85 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt  164 (218)
T cd03266          85 DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT  164 (218)
T ss_pred             CCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            9852        1111110000 01111223455677777766666666666 999999999999998 58888888 99


Q ss_pred             CCCCchhh------------cCCc-----------ccccCEEEEEcCCcccc
Q 023354          203 GGDKIPRK------------GGPG-----------ITQADLLVINKTDLASA  231 (283)
Q Consensus       203 ~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~  231 (283)
                      ++.|....            .+.+           ..+||++++++.|++.+
T Consensus       165 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~  216 (218)
T cd03266         165 TGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY  216 (218)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence            98753211            1112           15689999998888765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PTZ00243 ABC transporter; Provisional

Probab=99.89  E-value=9.2e-24  Score=226.25  Aligned_cols=184  Identities=15%  Similarity=0.092  Sum_probs=143.1

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .|.+.+.++++.|++...++|++++|..+ |++|||+|++|||||||+++|+|++.|+ |+|.+++.|+...+..++|+.
T Consensus      1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~ 1385 (1560)
T PTZ00243       1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQ 1385 (1560)
T ss_pred             CCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhc
Confidence            57799999999998876678999999965 9999999999999999999999999997 999999999999999999999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHHHHHHh
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSREL  191 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ia~al  191 (283)
                      +++|||++..+      +.... ...+ .+.   +.++++..+.       ..++|..+.|     |+||+||++|||++
T Consensus      1386 I~iVpQdp~LF~gTIreNIdp~-~~~s-dee---I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARAL 1460 (1560)
T PTZ00243       1386 FSMIPQDPVLFDGTVRQNVDPF-LEAS-SAE---VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARAL 1460 (1560)
T ss_pred             ceEECCCCccccccHHHHhCcc-cCCC-HHH---HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHH
Confidence            99999998532      11111 1112 122   2333333222       3467887776     99999999999999


Q ss_pred             cC--CcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354          192 AD--YIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       192 ~~--~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +.  +.|+|+| ||+..|...          .. .          .++..||+|++++.|++.+.|++.+++.
T Consensus      1461 L~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243       1461 LKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred             hcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            94  5777777 888754321          10 1          1247899999999999999999988764

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.89  E-value=2.1e-22  Score=180.57  Aligned_cols=183  Identities=19%  Similarity=0.179  Sum_probs=131.5

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC---------CCcEEEEeecCCCCCHHHHHHhccccCCchH-
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---------KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~---------~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-  138 (283)
                      ..+.+++|.. +|++++|+||||||||||+++|+|+++|         +|+|.+.+.++.......+++.++|++|++. 
T Consensus        15 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~   94 (272)
T PRK13547         15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQP   94 (272)
T ss_pred             eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence            5788999984 5999999999999999999999999987         5899999888766566666677899998752 


Q ss_pred             -------HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc----------CCc
Q 023354          139 -------RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA----------DYI  195 (283)
Q Consensus       139 -------~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~----------~~~  195 (283)
                             +.+.++..+..     ...+....+.+.++.++.....+..+.+ |+||+||+.||++++          +|.
T Consensus        95 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~  174 (272)
T PRK13547         95 AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR  174 (272)
T ss_pred             CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCC
Confidence                   12222222111     0112223445677777766666666666 999999999999998          688


Q ss_pred             EEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC
Q 023354          196 IYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGG  250 (283)
Q Consensus       196 l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~  250 (283)
                      ++++| |+++.|..             ...+.++           .+||++++++.|++.+.|+..+.+........++.
T Consensus       175 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  254 (272)
T PRK13547        175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIARCYGF  254 (272)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcCHHHHHHHhCC
Confidence            88888 99986532             1112221           57999999999999988887777665444444444


Q ss_pred             Ce
Q 023354          251 PF  252 (283)
Q Consensus       251 ~i  252 (283)
                      ++
T Consensus       255 ~~  256 (272)
T PRK13547        255 AV  256 (272)
T ss_pred             Ce
Confidence            43

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.89  E-value=3.6e-23  Score=185.23  Aligned_cols=184  Identities=20%  Similarity=0.057  Sum_probs=128.5

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHh
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMR  129 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~  129 (283)
                      +...++++.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......   .+++.
T Consensus         8 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~   85 (269)
T PRK11831          8 VDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR   85 (269)
T ss_pred             EEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence            444555555532  34788999985 59999999999999999999999999987 9999998877654332   34567


Q ss_pred             ccccCCchH--------HHHHhCCCCC--CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354          130 NGALPEERI--------RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (283)
Q Consensus       130 ig~v~q~~~--------~~i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~  197 (283)
                      ++|++|++.        +.+.++....  .........+.+.++.+++....+..+.+ |+||+||+.||++++ +|.++
T Consensus        86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  165 (269)
T PRK11831         86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLI  165 (269)
T ss_pred             EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999753        1111110000  11111122345567777776666776766 999999999999998 58888


Q ss_pred             EEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          198 IID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       198 llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++| |+++.|...             +.+.++           .+||++++++.|++.+.|+..+.+.
T Consensus       166 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  233 (269)
T PRK11831        166 MFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA  233 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence            888 999875321             112221           5799999999999988887666543

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.89  E-value=2.9e-23  Score=178.44  Aligned_cols=155  Identities=15%  Similarity=0.113  Sum_probs=111.5

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-H-----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-A-----  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~-----  140 (283)
                      ...+.+++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++..   ...++.++|++|++.. +     
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv   89 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSV   89 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccH
Confidence            35788999984 59999999999999999999999999987 999998877642   3455679999998521 1     


Q ss_pred             ---HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh----
Q 023354          141 ---VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK----  210 (283)
Q Consensus       141 ---i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~----  210 (283)
                         +.++ ....  ......+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|....    
T Consensus        90 ~e~l~~~-~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~  166 (205)
T cd03226          90 REELLLG-LKEL--DAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG  166 (205)
T ss_pred             HHHHhhh-hhhc--CccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH
Confidence               1111 0000  01112455678888777667777777 999999999999998 58888888 9998764211    


Q ss_pred             --------cCCcc-----------cccCEEEEEcCCcc
Q 023354          211 --------GGPGI-----------TQADLLVINKTDLA  229 (283)
Q Consensus       211 --------~~~~i-----------~~ad~ivi~K~g~i  229 (283)
                              .+.++           .+||++++++.|++
T Consensus       167 ~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i  204 (205)
T cd03226         167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI  204 (205)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence                    11111           46888888877765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.89  E-value=4.8e-23  Score=192.18  Aligned_cols=172  Identities=16%  Similarity=0.064  Sum_probs=125.5

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee----cCCCCCHHHH---H-HhccccCCchH
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGEF---L-MRNGALPEERI  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~----d~~~~~~~~~---~-~~ig~v~q~~~  138 (283)
                      ..++++++|..+ |++++|+|+||||||||+++|+|+++|+ |+|.+.+.    ++...+..++   + +.++|+||++.
T Consensus        37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~  116 (382)
T TIGR03415        37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA  116 (382)
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence            346889999854 9999999999999999999999999998 99999875    4444443333   2 46999999763


Q ss_pred             --------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          139 --------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       139 --------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                              +.+.++.... ....+....+.+.++.+++....+..+.+ |+||+||+.|||+|+ +|.|+++| |+++.|
T Consensus       117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD  196 (382)
T TIGR03415       117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD  196 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence                    1222221100 11122223556778888887777877777 999999999999998 58888888 999865


Q ss_pred             ch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          207 IP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       207 l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ..             .+.+.+           .++||+|++++.|++.+.|++.+.+.
T Consensus       197 ~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~  254 (382)
T TIGR03415       197 PLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL  254 (382)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence            32             111222           26799999999999999998877653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=6.8e-23  Score=179.99  Aligned_cols=183  Identities=18%  Similarity=0.088  Sum_probs=124.6

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig  131 (283)
                      +.+.++...|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+... +++.++
T Consensus         6 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   83 (237)
T PRK11614          6 LSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA   83 (237)
T ss_pred             EEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence            344455555532  45789999985 59999999999999999999999999987 99999998876655443 456799


Q ss_pred             ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHc-cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l-~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      |++|++.        +.+..+.. ..........+.+.++.+ ......+..+.+ |+||+||+.||++++ +|.++++|
T Consensus        84 ~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD  162 (237)
T PRK11614         84 IVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD  162 (237)
T ss_pred             EeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence            9998753        11112111 111111111223334444 233333444555 999999999999998 68888888


Q ss_pred             -CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       |+++.|...            +.+.+           .++||++++++.|++...|+..+.+.
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        163 EPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence             999865321            11222           16799999999999998888766654

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.89  E-value=2.9e-23  Score=181.07  Aligned_cols=166  Identities=16%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc-----cCC-CcEEEEeecCCCCC--HHHHHHhccccCCchHHH
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL-----RDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIRA  140 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~-----~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~~  140 (283)
                      ..+++++|.. +|++++|+|+||||||||+++|+|++     +|. |+|.+.+.++...+  ...+++.++|++|++..+
T Consensus        14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~   93 (227)
T cd03260          14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF   93 (227)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence            5788999985 59999999999999999999999999     887 99999988876544  345567899999986321


Q ss_pred             -------HHhCCCCCC-ChHH-HHHHHHHHHHHccccccCCCc--ccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          141 -------VETGGCPHA-AIRE-DISINLGPLEELSNLFKADLL--LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       141 -------i~~~g~~~~-~~~~-~~~~~~~~l~~l~~~~~~d~~--i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                             +.++..... .... ....+.+.++.++.....+..  +.+ |+||+||++||++++ +|.++++| |+++.|
T Consensus        94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  173 (227)
T cd03260          94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD  173 (227)
T ss_pred             cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence                   111110000 0111 122445567777665544444  355 999999999999998 47787777 999875


Q ss_pred             chhh---------c--CCc-----------ccccCEEEEEcCCcccccCCh
Q 023354          207 IPRK---------G--GPG-----------ITQADLLVINKTDLASAIGAD  235 (283)
Q Consensus       207 l~~~---------~--~~~-----------i~~ad~ivi~K~g~i~~~g~~  235 (283)
                      ...+         .  ..+           ..+||++++++.|++.+.|++
T Consensus       174 ~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~  224 (227)
T cd03260         174 PISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPT  224 (227)
T ss_pred             HHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCc
Confidence            3211         0  111           157999999999998876654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=7.2e-23  Score=180.23  Aligned_cols=182  Identities=17%  Similarity=0.138  Sum_probs=127.6

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhcccc
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGAL  133 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v  133 (283)
                      ..++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.. .++.++|+
T Consensus         6 ~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~   83 (241)
T PRK10895          6 AKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL   83 (241)
T ss_pred             EeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEe
Confidence            3444555532  35788999985 59999999999999999999999999987 99999988876555433 35679999


Q ss_pred             CCchH--------HHHHhCCCCC--CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          134 PEERI--------RAVETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       134 ~q~~~--------~~i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      +|++.        +.+.+.....  ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| 
T Consensus        84 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (241)
T PRK10895         84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE  163 (241)
T ss_pred             ccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            99853        1111111001  01111222445667777665555666666 999999999999998 58888888 


Q ss_pred             CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |+++.|...            +.+.+           ...||++++++.|++.+.++..+.+.
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        164 PFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            999865321            11222           16799999999999988887766543

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=9.5e-23  Score=183.49  Aligned_cols=183  Identities=16%  Similarity=0.112  Sum_probs=126.1

Q ss_pred             ccCCCCCCCCC---CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC----CHHHHHH
Q 023354           58 PIYSPGYFSRR---APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----EDGEFLM  128 (283)
Q Consensus        58 ~~~~~~~~~~~---~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~----~~~~~~~  128 (283)
                      .++.+.|....   .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...    ....+++
T Consensus         6 ~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~   85 (280)
T PRK13649          6 QNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRK   85 (280)
T ss_pred             EEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHh
Confidence            34444554322   35788999985 59999999999999999999999999987 9999998877542    2345667


Q ss_pred             hccccCCchH-H--------HHHhCCCCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          129 RNGALPEERI-R--------AVETGGCPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       129 ~ig~v~q~~~-~--------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      .++|++|++. .        .+.++.... ....+....+.+.++.+++. ...+..+.+ |+||+||+.+|++++ +|.
T Consensus        86 ~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~  165 (280)
T PRK13649         86 KVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPK  165 (280)
T ss_pred             heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            8999999852 1        111110000 11111112334556666664 345666666 999999999999998 588


Q ss_pred             EEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          196 IYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       196 l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++++| |+++.|...            +.+.++           .+||++++++.|++...|++.+.+.
T Consensus       166 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        166 ILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            88888 999875321            112221           5799999999999988887766654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.89  E-value=5.4e-23  Score=177.62  Aligned_cols=161  Identities=15%  Similarity=0.055  Sum_probs=113.9

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH-------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-------  140 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~-------  140 (283)
                      +.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......  ++.++|++|++..+       
T Consensus        14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~~q~~~~~~~~tv~~   91 (213)
T cd03301          14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYD   91 (213)
T ss_pred             eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEEecChhhccCCCHHH
Confidence            5788999984 59999999999999999999999999887 9999998887543332  35799999986311       


Q ss_pred             -HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354          141 -VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------  209 (283)
Q Consensus       141 -i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------  209 (283)
                       +..+.... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|...      
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~  171 (213)
T cd03301          92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA  171 (213)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence             11111000 11111222445567777666666777777 999999999999998 58888888 999975321      


Q ss_pred             -------hcCCcc-----------cccCEEEEEcCCccccc
Q 023354          210 -------KGGPGI-----------TQADLLVINKTDLASAI  232 (283)
Q Consensus       210 -------~~~~~i-----------~~ad~ivi~K~g~i~~~  232 (283)
                             +.+.++           .+||++++++.|++.+.
T Consensus       172 ~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~  212 (213)
T cd03301         172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI  212 (213)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence                   112221           56888888888887654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=7.9e-23  Score=180.14  Aligned_cols=177  Identities=16%  Similarity=0.082  Sum_probs=125.2

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .++.+.|..  ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|
T Consensus         7 ~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q   84 (241)
T PRK14250          7 KEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQ   84 (241)
T ss_pred             EeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEec
Confidence            344444432  35788899985 59999999999999999999999999987 999999988765555566778999999


Q ss_pred             chHHH-------HHhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          136 ERIRA-------VETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       136 ~~~~~-------i~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                      ++..+       +.++.....   .....+.+.++.++.. ...+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus        85 ~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  161 (241)
T PRK14250         85 QPHLFEGTVKDNIEYGPMLKG---EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA  161 (241)
T ss_pred             CchhchhhHHHHHhcchhhcC---cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            86311       111110000   1112344566666664 344555656 999999999999998 58888888 9998


Q ss_pred             CCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          205 DKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       205 ~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .|...             +.+.++           .+||++++++.|++...+++.+.+
T Consensus       162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (241)
T PRK14250        162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF  220 (241)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence            65321             112221           579999999999998877776654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.89  E-value=6.6e-23  Score=179.98  Aligned_cols=179  Identities=16%  Similarity=0.158  Sum_probs=120.1

Q ss_pred             CCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           60 YSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      +.+.|.....+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++
T Consensus         6 l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   85 (237)
T cd03252           6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQEN   85 (237)
T ss_pred             EEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCc
Confidence            34445433356788999984 59999999999999999999999999987 99999888776555556677899999986


Q ss_pred             HHH-------HHhCCCCCCChHHHHHHH------HHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          138 IRA-------VETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       138 ~~~-------i~~~g~~~~~~~~~~~~~------~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ..+       +.++ ..... .......      .+.+..+  ......+..+.+ |+||+||+.||++++ +|.++++|
T Consensus        86 ~~~~~tv~~nl~~~-~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  163 (237)
T cd03252          86 VLFNRSIRDNIALA-DPGMS-MERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD  163 (237)
T ss_pred             hhccchHHHHhhcc-CCCCC-HHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence            311       1111 11111 1111110      1122222  111222344445 999999999999998 58888887


Q ss_pred             -CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       |+++.|....           .+.+          +..||++++++.|++.+.|+..+.+.
T Consensus       164 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  225 (237)
T cd03252         164 EATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA  225 (237)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence             9998753211           1112          25689999999999998887666543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.89  E-value=1.1e-22  Score=187.16  Aligned_cols=186  Identities=16%  Similarity=0.110  Sum_probs=130.0

Q ss_pred             cccccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHH
Q 023354           55 SHEPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        55 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~  127 (283)
                      ....+.+..|...  ...++++++|.. +|++++|+|+||||||||+++|+|+++|    .|+|.+.+.++......+++
T Consensus        13 L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~   92 (330)
T PRK09473         13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELN   92 (330)
T ss_pred             EEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHH
Confidence            3444554444322  235789999985 5999999999999999999999999987    59999999998776655442


Q ss_pred             ----HhccccCCchHH----------HHHhC--CCCCCChHHHHHHHHHHHHHcccccc---CCCcccC-CchHHHHHHH
Q 023354          128 ----MRNGALPEERIR----------AVETG--GCPHAAIREDISINLGPLEELSNLFK---ADLLLCE-SGGDNLAANF  187 (283)
Q Consensus       128 ----~~ig~v~q~~~~----------~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~~~---~d~~i~e-SgGq~q~~~i  187 (283)
                          +.++|+||++..          .+...  ........+....+.+.|+.+++...   .+....+ ||||+||+.|
T Consensus        93 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I  172 (330)
T PRK09473         93 KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI  172 (330)
T ss_pred             HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence                369999999631          11100  00011122223345566777665432   2445555 9999999999


Q ss_pred             HHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          188 SRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       188 a~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |++++ +|.|+|+| |+++.|..             ++.+.++           .+||+|++++.|++++.|+..+++.
T Consensus       173 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~  251 (330)
T PRK09473        173 AMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFY  251 (330)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99998 58888888 99986532             2212221           5799999999999999998877764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.89  E-value=1e-22  Score=178.85  Aligned_cols=169  Identities=20%  Similarity=0.198  Sum_probs=120.2

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------  139 (283)
                      ..+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..++.++|++|++..        
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~~~q~~~~~~~~t~~~   93 (236)
T TIGR03864        15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGVVFQQPTLDLDLSVRQ   93 (236)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEEeCCCCCCcccCcHHH
Confidence            4788899984 59999999999999999999999999987 999998887754433 334579999997531        


Q ss_pred             HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354          140 AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------  209 (283)
Q Consensus       140 ~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------  209 (283)
                      .+....... .........+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|...      
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~  173 (236)
T TIGR03864        94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA  173 (236)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence            111111101 11111222445667777666656666666 999999999999998 58888888 999865321      


Q ss_pred             -------hcCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          210 -------KGGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       210 -------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                             +.+.+          +..||++++++.|.+...++..+.+
T Consensus       174 ~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (236)
T TIGR03864       174 HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR  220 (236)
T ss_pred             HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence                   11222          2459999999999998877665444

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.89  E-value=8.3e-23  Score=179.05  Aligned_cols=153  Identities=16%  Similarity=0.093  Sum_probs=108.7

Q ss_pred             cccccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HH
Q 023354           55 SHEPIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL  127 (283)
Q Consensus        55 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~  127 (283)
                      ....++++.|....  .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+   ++
T Consensus         6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~   85 (233)
T PRK11629          6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR   85 (233)
T ss_pred             EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence            34455566665432  35789999985 59999999999999999999999999987 99999998887655432   22


Q ss_pred             -HhccccCCchH--------HHHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          128 -MRNGALPEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       128 -~~ig~v~q~~~--------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                       +.++|++|++.        +.+.++... .....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.
T Consensus        86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~  165 (233)
T PRK11629         86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPR  165 (233)
T ss_pred             hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence             56999999853        111111100 001112223455677777776656666666 999999999999998 588


Q ss_pred             EEEEe-CCCCCCc
Q 023354          196 IYIID-VSGGDKI  207 (283)
Q Consensus       196 l~llD-pt~g~~l  207 (283)
                      ++++| |+++.|.
T Consensus       166 lllLDEPt~~LD~  178 (233)
T PRK11629        166 LVLADEPTGNLDA  178 (233)
T ss_pred             EEEEeCCCCCCCH
Confidence            88888 9999764

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.89  E-value=1.1e-22  Score=180.08  Aligned_cols=181  Identities=15%  Similarity=0.097  Sum_probs=125.0

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC--------HHHH
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--------DGEF  126 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~--------~~~~  126 (283)
                      ..++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....        ...+
T Consensus         6 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK11264          6 VKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQL   83 (250)
T ss_pred             EeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHh
Confidence            3445555542  35788999985 59999999999999999999999999987 99999888765321        2345


Q ss_pred             HHhccccCCchH--------HHHHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354          127 LMRNGALPEERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       127 ~~~ig~v~q~~~--------~~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      ++.++|++|++.        +.+.++..  ...........+.+.++.++.....+..+.+ |+||+||+.||++++ +|
T Consensus        84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p  163 (250)
T PRK11264         84 RQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP  163 (250)
T ss_pred             hhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCC
Confidence            667999999753        11111100  0011111122345567777666555666666 999999999999998 58


Q ss_pred             cEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          195 IIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .++++| |+++.|...            +.+.++           .+||++++++.|++.+.|+..+.+
T Consensus       164 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  232 (250)
T PRK11264        164 EVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF  232 (250)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            888888 999875321            111121           579999999999998877765543

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.89  E-value=1.2e-22  Score=176.54  Aligned_cols=149  Identities=15%  Similarity=0.136  Sum_probs=105.3

Q ss_pred             cCCCCCCCCC--CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HH-Hhc
Q 023354           59 IYSPGYFSRR--APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRN  130 (283)
Q Consensus        59 ~~~~~~~~~~--~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~-~~i  130 (283)
                      ++.+.|....  .+.+.+++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...   ++ +.+
T Consensus         6 ~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   85 (221)
T TIGR02211         6 NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKL   85 (221)
T ss_pred             eeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcE
Confidence            4445554322  3578899998 459999999999999999999999999987 99999988876554433   23 569


Q ss_pred             cccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          131 GALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       131 g~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      +|++|++.        +.+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++
T Consensus        86 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl  165 (221)
T TIGR02211        86 GFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLA  165 (221)
T ss_pred             EEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            99999853        1111110000 01112223445677777766666676666 999999999999998 5888888


Q ss_pred             e-CCCCCCc
Q 023354          200 D-VSGGDKI  207 (283)
Q Consensus       200 D-pt~g~~l  207 (283)
                      | |+++.|.
T Consensus       166 DEPt~~LD~  174 (221)
T TIGR02211       166 DEPTGNLDN  174 (221)
T ss_pred             eCCCCcCCH
Confidence            8 9998764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.89  E-value=1.6e-22  Score=180.87  Aligned_cols=171  Identities=15%  Similarity=0.111  Sum_probs=120.4

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-------
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------  139 (283)
                      .+.+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++..       
T Consensus        26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t  105 (267)
T PRK15112         26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR  105 (267)
T ss_pred             cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence            357889999854 9999999999999999999999999987 9999998877543333444579999997521       


Q ss_pred             ---HHHhCCC-C-CCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-
Q 023354          140 ---AVETGGC-P-HAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-  209 (283)
Q Consensus       140 ---~i~~~g~-~-~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-  209 (283)
                         .+.+... . .....+....+.+.++.++.. ...+..+.+ |+||+||++||++++ +|.|+++| |+++.|... 
T Consensus       106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~  185 (267)
T PRK15112        106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR  185 (267)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence               1111100 0 011111222445677777663 444555556 999999999999998 58888888 999865321 


Q ss_pred             ------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          210 ------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       210 ------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                                  +.+.++           .+||++++++.|++...|+..+.+
T Consensus       186 ~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  238 (267)
T PRK15112        186 SQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL  238 (267)
T ss_pred             HHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence                        112221           579999999999998877665544

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.89  E-value=2.9e-23  Score=179.16  Aligned_cols=161  Identities=18%  Similarity=0.133  Sum_probs=113.7

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------  139 (283)
                      +.+++++|..+ | +++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|++..        
T Consensus        14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~   91 (211)
T cd03264          14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVRE   91 (211)
T ss_pred             EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHHH
Confidence            57888888844 8 99999999999999999999999987 99999888776544 5567789999998631        


Q ss_pred             HHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh-----
Q 023354          140 AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK-----  210 (283)
Q Consensus       140 ~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~-----  210 (283)
                      .+.+.... .....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|....     
T Consensus        92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~  171 (211)
T cd03264          92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRN  171 (211)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence            11111000 001111122345567777666656666666 999999999999998 58888887 9999764311     


Q ss_pred             ----c--CCcc-----------cccCEEEEEcCCccccc
Q 023354          211 ----G--GPGI-----------TQADLLVINKTDLASAI  232 (283)
Q Consensus       211 ----~--~~~i-----------~~ad~ivi~K~g~i~~~  232 (283)
                          .  ..++           .+||++++++.|.+.+.
T Consensus       172 ~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~  210 (211)
T cd03264         172 LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE  210 (211)
T ss_pred             HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence                0  1111           56888888888887653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.89  E-value=1.2e-22  Score=177.17  Aligned_cols=174  Identities=17%  Similarity=0.116  Sum_probs=117.3

Q ss_pred             ccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhc
Q 023354           58 PIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRN  130 (283)
Q Consensus        58 ~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~i  130 (283)
                      .++.+.|....  .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+.   ..+++.+
T Consensus         5 ~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   84 (228)
T cd03257           5 KNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEI   84 (228)
T ss_pred             EeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccE
Confidence            34455554321  25788999985 59999999999999999999999999987 999999988765442   3456789


Q ss_pred             cccCCchHH----------HHHhCCCCCC-ChH-HHHHH-HHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354          131 GALPEERIR----------AVETGGCPHA-AIR-EDISI-NLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       131 g~v~q~~~~----------~i~~~g~~~~-~~~-~~~~~-~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      +|++|++..          .+.++..... ... ..... ..+.++.+... ...+..+.+ |+||+||+.+|++++ +|
T Consensus        85 ~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p  164 (228)
T cd03257          85 QMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNP  164 (228)
T ss_pred             EEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCC
Confidence            999998621          1111100000 111 11111 12556666653 345566666 999999999999998 48


Q ss_pred             cEEEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccc
Q 023354          195 IIYIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASA  231 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~  231 (283)
                      .++++| |+++.|...             +.+.++           .+||++++++.|++..
T Consensus       165 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  226 (228)
T cd03257         165 KLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE  226 (228)
T ss_pred             CEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence            888888 999865321             112221           4789999998888765

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.89  E-value=6.5e-23  Score=180.44  Aligned_cols=170  Identities=18%  Similarity=0.145  Sum_probs=122.3

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC--HHHHHHhccccCCchH-------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERI-------  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~-------  138 (283)
                      ..+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....  ...+++.++|++|++.       
T Consensus        15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   94 (240)
T PRK09493         15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA   94 (240)
T ss_pred             EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence            4788999984 59999999999999999999999999987 99999988775432  2345667999998753       


Q ss_pred             -HHHHhCCCC--CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---
Q 023354          139 -RAVETGGCP--HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---  209 (283)
Q Consensus       139 -~~i~~~g~~--~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---  209 (283)
                       +.+.++...  .....+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...   
T Consensus        95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~  174 (240)
T PRK09493         95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE  174 (240)
T ss_pred             HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence             111121110  011112223455677777766666666666 999999999999998 58888888 999875421   


Q ss_pred             ---------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          210 ---------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       210 ---------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                               +.+.++           .+||++++++.|++.+.|+..+.+
T Consensus       175 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  224 (240)
T PRK09493        175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI  224 (240)
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence                     112221           579999999999999887766544

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.89  E-value=1.6e-22  Score=179.95  Aligned_cols=183  Identities=19%  Similarity=0.153  Sum_probs=126.4

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec-----CCCCCHHHH-
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF-  126 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d-----~~~~~~~~~-  126 (283)
                      +...++.+.|..  ...+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+     +.......+ 
T Consensus         7 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~   84 (258)
T PRK11701          7 LSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR   84 (258)
T ss_pred             EEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence            445566666643  35788899985 59999999999999999999999999987 999999887     554444332 


Q ss_pred             ---HHhccccCCchHH----------HHHhC--CCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHH
Q 023354          127 ---LMRNGALPEERIR----------AVETG--GCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       127 ---~~~ig~v~q~~~~----------~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~  189 (283)
                         ++.++|++|++..          .+...  ........+....+.+.++.+.... ..+..+.+ |+||+||++|||
T Consensus        85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar  164 (258)
T PRK11701         85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR  164 (258)
T ss_pred             HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence               3469999998621          11100  0000011111223456677776643 45566666 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          190 ELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +++ +|.|+++| |+++.|..             .+.+.++           .+||++++++.|++.+.|++.+.+
T Consensus       165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  240 (258)
T PRK11701        165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL  240 (258)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            998 58888888 99986532             1112221           579999999999999888766544

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.88  E-value=1.6e-22  Score=178.12  Aligned_cols=180  Identities=17%  Similarity=0.050  Sum_probs=126.7

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALP  134 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~  134 (283)
                      .+..+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......+. ++.++|++
T Consensus         6 ~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~   83 (242)
T TIGR03411         6 EGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKF   83 (242)
T ss_pred             EeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEec
Confidence            344445543  35788999985 59999999999999999999999999987 999999887765554433 34699999


Q ss_pred             CchH--------HHHHhCCCCCC---------ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-Cc
Q 023354          135 EERI--------RAVETGGCPHA---------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YI  195 (283)
Q Consensus       135 q~~~--------~~i~~~g~~~~---------~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~  195 (283)
                      |++.        +.+.++.....         ........+.+.++.++.....+..+.+ |+||+||+++|++++. |.
T Consensus        84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~  163 (242)
T TIGR03411        84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK  163 (242)
T ss_pred             cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            8753        12222111000         0011223455677777766666666666 9999999999999994 88


Q ss_pred             EEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          196 IYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       196 l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ++++| |+++.|....           ...++           .+||++++++.|++...++..+.+
T Consensus       164 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~  230 (242)
T TIGR03411       164 LLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ  230 (242)
T ss_pred             EEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence            88888 9999764211           01121           579999999999999888766554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.88  E-value=1e-22  Score=200.15  Aligned_cols=188  Identities=17%  Similarity=0.175  Sum_probs=136.9

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|+....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus       311 ~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  390 (569)
T PRK10789        311 RGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR  390 (569)
T ss_pred             CCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhh
Confidence            3457788889998866667899999984 59999999999999999999999999997 999999999888888888999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      ++|++|++..+      +...+.+..+ .+.+..+.+  .+.++  ....+++..+.+     ||||+||+++||+++ +
T Consensus       391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~  469 (569)
T PRK10789        391 LAVVSQTPFLFSDTVANNIALGRPDAT-QQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN  469 (569)
T ss_pred             eEEEccCCeeccccHHHHHhcCCCCCC-HHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            99999987422      2222223222 222222111  11111  123455665554     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.++++| |+++.|...+           .+.+          +..||+|++++.|++.+.|+..+.+.
T Consensus       470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  538 (569)
T PRK10789        470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ  538 (569)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence            7777777 9998653211           1111          36799999999999999998766653

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.1e-22  Score=180.05  Aligned_cols=180  Identities=16%  Similarity=0.082  Sum_probs=125.2

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCCCHHHHHHhc
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      .++...|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|      +|+|.+.+.++.......+++.+
T Consensus         7 ~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i   84 (250)
T PRK14247          7 RDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRV   84 (250)
T ss_pred             EeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccE
Confidence            344444432  35788999984 5999999999999999999999999873      49999999888665555667789


Q ss_pred             cccCCchH--------HHHHhCCCCCC---ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          131 GALPEERI--------RAVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       131 g~v~q~~~--------~~i~~~g~~~~---~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      ||++|++.        +.+.++.....   ...+....+.+.++.+++.    ...+..+.+ |+||+||+++|++++ +
T Consensus        85 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~  164 (250)
T PRK14247         85 QMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ  164 (250)
T ss_pred             EEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            99999863        11111110000   1111122345566666543    234666666 999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      |.++++| |+++.|....           .+.+           ...||++++++.|++.+.|+..+.+
T Consensus       165 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        165 PEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence            8888888 9998653211           1111           1579999999999998888776654

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=9.7e-23  Score=187.56  Aligned_cols=172  Identities=12%  Similarity=0.072  Sum_probs=123.5

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc----CC-CcEEEEeecCCCCCHHHHH----HhccccCCchH
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR----DK-YSLAAVTNDIFTKEDGEFL----MRNGALPEERI  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~----~~-g~i~i~~~d~~~~~~~~~~----~~ig~v~q~~~  138 (283)
                      ..++++++|.. +|++++|+|+||||||||+++|+|+++    ++ |+|.+.+.++......+++    +.++|+||++.
T Consensus        20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence            35789999985 599999999999999999999999986    35 9999999888766554432    36999999863


Q ss_pred             HH----------HHh--CCCCC-C----ChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          139 RA----------VET--GGCPH-A----AIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       139 ~~----------i~~--~g~~~-~----~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      ..          +..  .+... .    ...+....+.+.|+.+++..   ..+..+.+ ||||+||+.||++|+ +|.|
T Consensus       100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l  179 (330)
T PRK15093        100 SCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRL  179 (330)
T ss_pred             hhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCE
Confidence            11          110  01000 0    00122234567788877653   23555666 999999999999998 5888


Q ss_pred             EEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          197 YIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       197 ~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|+| |++++|..             ++.+.++           .+||+|++++.|++++.|+..+++.
T Consensus       180 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~  248 (330)
T PRK15093        180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT  248 (330)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            8888 99987532             1112221           6799999999999999888777654

>PRK10908 cell division protein FtsE; Provisional

Probab=99.88  E-value=1.4e-22  Score=176.38  Aligned_cols=172  Identities=15%  Similarity=0.129  Sum_probs=117.8

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhcccc
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGAL  133 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v  133 (283)
                      ++...|+. ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|+
T Consensus         6 ~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~   84 (222)
T PRK10908          6 HVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMI   84 (222)
T ss_pred             eeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEE
Confidence            34444432 235788899985 59999999999999999999999999987 9999998887654432   256789999


Q ss_pred             CCchHH--------HHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          134 PEERIR--------AVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       134 ~q~~~~--------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                      +|++..        .+.++.... ....+....+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |
T Consensus        85 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  164 (222)
T PRK10908         85 FQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP  164 (222)
T ss_pred             ecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            998631        111111000 11111122344567777666555666666 999999999999998 58888888 9


Q ss_pred             CCCCCchhh------------cCCcc-----------cccCEEEEEcCCcccc
Q 023354          202 SGGDKIPRK------------GGPGI-----------TQADLLVINKTDLASA  231 (283)
Q Consensus       202 t~g~~l~~~------------~~~~i-----------~~ad~ivi~K~g~i~~  231 (283)
                      +++.|....            .+.++           ..||++++++.|++..
T Consensus       165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            998764211            11111           4678888888887654

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.88  E-value=1.2e-22  Score=198.62  Aligned_cols=185  Identities=18%  Similarity=0.158  Sum_probs=134.7

Q ss_pred             CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+.+.++++.|+....+.+++.+|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.+
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence            4578889999998766678999999855 9999999999999999999999999987 9999999999888888888999


Q ss_pred             cccCCchHHH-------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          131 GALPEERIRA-------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       131 g~v~q~~~~~-------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      +|+||++..+       +..+. +..+ .+.+..+.+  .+.++.  ...+++..+.+     ||||+||+++||++. +
T Consensus       395 ~~v~q~~~lf~~ti~~Ni~~~~-~~~~-~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~  472 (544)
T TIGR01842       395 GYLPQDVELFPGTVAENIARFG-ENAD-PEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD  472 (544)
T ss_pred             EEecCCcccccccHHHHHhccC-CCCC-HHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence            9999987422       22222 2122 122211111  122221  12345555554     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchh----------h--cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          194 YIIYIID-VSGGDKIPR----------K--GGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~----------~--~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      |.++++| ||++.|...          .  .+.+          +..||+|++++.|++.+.|+..+.+
T Consensus       473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~  541 (544)
T TIGR01842       473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL  541 (544)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence            7777777 999865321          1  1122          2679999999999999988876543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.88  E-value=1.3e-22  Score=181.26  Aligned_cols=171  Identities=16%  Similarity=0.122  Sum_probs=122.2

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchHH-H--
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIR-A--  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~-~--  140 (283)
                      ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|++|++.. +  
T Consensus        24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~  103 (265)
T TIGR02769        24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP  103 (265)
T ss_pred             eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence            35789999985 59999999999999999999999999987 9999998887654433   245679999998521 1  


Q ss_pred             -------HHhCCC-CC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          141 -------VETGGC-PH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       141 -------i~~~g~-~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                             +.+... .. .........+.+.++.++.. ...+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus       104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~  183 (265)
T TIGR02769       104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM  183 (265)
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence                   111000 00 00111223445677777664 345666666 999999999999998 58888888 9998753


Q ss_pred             h-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          208 P-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       208 ~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .             ...+.++           .+||++++++.|++...|+..+.+
T Consensus       184 ~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  239 (265)
T TIGR02769       184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL  239 (265)
T ss_pred             HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence            2             1112221           579999999999999888876665

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.88  E-value=2.2e-22  Score=173.94  Aligned_cols=139  Identities=18%  Similarity=0.137  Sum_probs=100.9

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchHHH---
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIRA---  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~~---  140 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|++|++..+   
T Consensus        15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   94 (214)
T TIGR02673        15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR   94 (214)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC
Confidence            35788999984 59999999999999999999999999887 9999998887654432   3566799999986311   


Q ss_pred             -----HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          141 -----VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       141 -----i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                           +.++.... .........+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus        95 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~  170 (214)
T TIGR02673        95 TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP  170 (214)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence                 11110000 01111122445667777766555666666 999999999999998 58888888 9999764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.88  E-value=6.6e-23  Score=199.77  Aligned_cols=154  Identities=22%  Similarity=0.215  Sum_probs=117.7

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.+++|.|+++. +.+++++|.. +|++++|+||+|||||||+++|+|+++|+ |+|.+++.++... ..++++.
T Consensus       332 ~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~  409 (529)
T TIGR02868       332 KPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRR  409 (529)
T ss_pred             CceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhh
Confidence            34588999999997643 5899999985 59999999999999999999999999998 9999999999998 8899999


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      ++||||++..+      +...+.+..+ .+++..+.+  .+.++.  ..+++|..++|     ||||+||+++||++. +
T Consensus       410 i~~V~Q~~~lF~~TI~eNI~~g~~~~~-~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~  488 (529)
T TIGR02868       410 ISVFAQDAHLFDTTVRDNLRLGRPDAT-DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD  488 (529)
T ss_pred             eEEEccCcccccccHHHHHhccCCCCC-HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence            99999998522      2222333322 222222222  122221  24577888876     999999999999998 4


Q ss_pred             CcEEEEe-CCCCCCch
Q 023354          194 YIIYIID-VSGGDKIP  208 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~  208 (283)
                      |.|+++| ||++.|..
T Consensus       489 ~~iliLDE~TSaLD~~  504 (529)
T TIGR02868       489 APILLLDEPTEHLDAG  504 (529)
T ss_pred             CCEEEEeCCcccCCHH
Confidence            7777776 99987653

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.88  E-value=2.2e-22  Score=175.71  Aligned_cols=177  Identities=15%  Similarity=0.120  Sum_probs=120.5

Q ss_pred             cccccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---H-
Q 023354           55 SHEPIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---F-  126 (283)
Q Consensus        55 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~-  126 (283)
                      +...+.+..|....  .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...   . 
T Consensus         7 l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   86 (228)
T PRK10584          7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLR   86 (228)
T ss_pred             EEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHH
Confidence            34445555555432  24788999985 59999999999999999999999999987 99999888876654432   2 


Q ss_pred             HHhccccCCchH--------HHHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          127 LMRNGALPEERI--------RAVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       127 ~~~ig~v~q~~~--------~~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      .+.++|++|++.        +.+.++. .......+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.
T Consensus        87 ~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~  166 (228)
T PRK10584         87 AKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD  166 (228)
T ss_pred             hheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            246999998753        1111111 00011112223455677777776666666666 999999999999998 588


Q ss_pred             EEEEe-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccc
Q 023354          196 IYIID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASA  231 (283)
Q Consensus       196 l~llD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~  231 (283)
                      ++++| |+++.|...             +.+.+          +..||++++++.|++.+
T Consensus       167 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~  226 (228)
T PRK10584        167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE  226 (228)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence            88888 999975321             11111          14578888887777653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=2e-22  Score=178.73  Aligned_cols=184  Identities=14%  Similarity=0.070  Sum_probs=128.0

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH-Hhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~-~~ig  131 (283)
                      +...++.+.|..  .+.+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..... ..++
T Consensus         6 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   83 (255)
T PRK11300          6 LSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV   83 (255)
T ss_pred             EEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence            344455555532  35788999985 59999999999999999999999999987 9999999887665544433 3588


Q ss_pred             ccCCchH--------HHHHhCCCC-----------C-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHH
Q 023354          132 ALPEERI--------RAVETGGCP-----------H-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAAN  186 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~-----------~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~  186 (283)
                      |++|++.        +.+.++...           .     ....+....+.+.++.++.....+..+.+ |+||+||+.
T Consensus        84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  163 (255)
T PRK11300         84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE  163 (255)
T ss_pred             EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence            8898753        112221100           0     00011122344567777666666677777 999999999


Q ss_pred             HHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          187 FSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       187 ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ||++++ +|.++++| |+++.|..             ++.+.++           .+||++++++.|++...|+..+.+.
T Consensus       164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~  243 (255)
T PRK11300        164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN  243 (255)
T ss_pred             HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence            999998 58888888 99997532             1112221           6799999999999998887766543

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.88  E-value=1.4e-22  Score=175.08  Aligned_cols=139  Identities=19%  Similarity=0.119  Sum_probs=100.5

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccccCCchHHH---
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIRA---  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~~~---  140 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....   ..+++.++|++|++..+   
T Consensus        14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~   93 (214)
T cd03292          14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR   93 (214)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence            35788999984 59999999999999999999999999987 999998887765433   23566799999986311   


Q ss_pred             -----HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          141 -----VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       141 -----i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                           +.++.... ....+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus        94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  169 (214)
T cd03292          94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP  169 (214)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence                 11110000 01111122345567777666555666666 999999999999998 58888888 9998764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.88  E-value=1.2e-22  Score=199.84  Aligned_cols=183  Identities=21%  Similarity=0.258  Sum_probs=136.3

Q ss_pred             CccccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           53 PHSHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      +.+.+.++++.|+... .+.+++++|.. +|++++|+|++|||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus       336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~  415 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR  415 (576)
T ss_pred             ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence            4578889999998654 56899999985 59999999999999999999999999987 999999999988888889999


Q ss_pred             ccccCCchH------HHHHhCCCCCCChHHHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHh
Q 023354          130 NGALPEERI------RAVETGGCPHAAIREDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSREL  191 (283)
Q Consensus       130 ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al  191 (283)
                      ++|+||++.      ..+.+.+.+..+ .+.+.   +.++..+       ...+.+..+.|     ||||+||+++||++
T Consensus       416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~-~~~~~---~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal  491 (576)
T TIGR02204       416 MALVPQDPVLFAASVMENIRYGRPDAT-DEEVE---AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI  491 (576)
T ss_pred             ceEEccCCccccccHHHHHhcCCCCCC-HHHHH---HHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence            999999974      222232333322 22222   2222221       12345666655     99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhhc-----------CCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          192 A-DYIIYIID-VSGGDKIPRKG-----------GPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~~-----------~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      . ++.++++| ||++.|...+.           ..+          +..||+++.+..|++.+.|+..+.+
T Consensus       492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~  562 (576)
T TIGR02204       492 LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI  562 (576)
T ss_pred             HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHH
Confidence            8 57666666 99986532110           111          3679999999999999988876554

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.88  E-value=4.8e-23  Score=177.38  Aligned_cols=159  Identities=17%  Similarity=0.050  Sum_probs=113.4

Q ss_pred             CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      .+.+++++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...  ..+++.++|++|++.        
T Consensus        13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~   90 (208)
T cd03268          13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTAR   90 (208)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcHH
Confidence            3578899998 459999999999999999999999999987 9999988776543  345677999999753        


Q ss_pred             HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh-----
Q 023354          139 RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK-----  210 (283)
Q Consensus       139 ~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~-----  210 (283)
                      +.+.+.......   ....+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|...+     
T Consensus        91 e~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~  167 (208)
T cd03268          91 ENLRLLARLLGI---RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE  167 (208)
T ss_pred             HHHHHHHHhcCC---cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence            111111110000   112334566777665556666666 999999999999999 58888888 9998764211     


Q ss_pred             -------cCCcc-----------cccCEEEEEcCCccccc
Q 023354          211 -------GGPGI-----------TQADLLVINKTDLASAI  232 (283)
Q Consensus       211 -------~~~~i-----------~~ad~ivi~K~g~i~~~  232 (283)
                             .+.++           .+||++++++.|++.+.
T Consensus       168 ~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~  207 (208)
T cd03268         168 LILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE  207 (208)
T ss_pred             HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence                   11221           56889999988887653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.88  E-value=1.2e-22  Score=179.42  Aligned_cols=170  Identities=16%  Similarity=0.127  Sum_probs=119.9

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCC--CHHHHHHhccccCCchH--
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGEFLMRNGALPEERI--  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~--  138 (283)
                      ..+.+++|.. +|++++|+|+||||||||+++|+|+++|      +|+|.+.+.++...  ....+++.++|+||++.  
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~   94 (247)
T TIGR00972        15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF   94 (247)
T ss_pred             eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence            4788899985 5999999999999999999999999975      58999988877542  23445678999999753  


Q ss_pred             -----HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          139 -----RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       139 -----~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                           +.+.++.....  ...+....+...++.++..    ...+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus        95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~  174 (247)
T TIGR00972        95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA  174 (247)
T ss_pred             CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence                 11111100000  1112222445567777665    445666666 999999999999998 58888888 9998


Q ss_pred             CCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          205 DKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       205 ~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .|....           ...+           ..+||++++++.|++...|++.+.+
T Consensus       175 LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (247)
T TIGR00972       175 LDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF  231 (247)
T ss_pred             CCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            653210           0112           1679999999999998888766554

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.88  E-value=2.1e-22  Score=173.90  Aligned_cols=138  Identities=18%  Similarity=0.160  Sum_probs=100.4

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhccccCCchHH------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR------  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~------  139 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..  .....+++.++|++|++..      
T Consensus        14 ~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   93 (213)
T cd03262          14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV   93 (213)
T ss_pred             EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCcH
Confidence            4788899985 59999999999999999999999999987 999999887743  2334556789999997631      


Q ss_pred             --HHHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          140 --AVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       140 --~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                        .+.++..  ......+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus        94 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~  168 (213)
T cd03262          94 LENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP  168 (213)
T ss_pred             HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence              1111100  0001111222445567777666556666666 999999999999998 58888888 9999764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.88  E-value=2.1e-22  Score=176.03  Aligned_cols=167  Identities=20%  Similarity=0.127  Sum_probs=115.9

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhccccCCchHHH------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERIRA------  140 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~~~------  140 (283)
                      +.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....... .++.++|++|++..+      
T Consensus        14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~   93 (230)
T TIGR03410        14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVE   93 (230)
T ss_pred             EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHH
Confidence            5788999985 59999999999999999999999999987 99999988876655443 345799999985311      


Q ss_pred             --HHhCCCCCCChHHHHHHHHHHHHHcc-ccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354          141 --VETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-----  209 (283)
Q Consensus       141 --i~~~g~~~~~~~~~~~~~~~~l~~l~-~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-----  209 (283)
                        +.++.........  ....+.++.+. .....+..+.+ |+||+||+++|++++ +|.++++| |+++.|...     
T Consensus        94 ~~l~~~~~~~~~~~~--~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~  171 (230)
T TIGR03410        94 ENLLTGLAALPRRSR--KIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG  171 (230)
T ss_pred             HHHHHHHHhcCcchH--HHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHH
Confidence              1111111100000  11223333332 23334555556 999999999999998 58888888 999875321     


Q ss_pred             --------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          210 --------KGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       210 --------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                              +.+.++           .+||++++++.|++...|+..++
T Consensus       172 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       172 RVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             HHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence                    112221           47999999999999888776654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=1.4e-22  Score=186.26  Aligned_cols=188  Identities=15%  Similarity=0.100  Sum_probs=130.5

Q ss_pred             CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc-----C-CCcEEEEeecCCCC--CH
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-----D-KYSLAAVTNDIFTK--ED  123 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~-----~-~g~i~i~~~d~~~~--~~  123 (283)
                      +.+.+.++++.|.....+.+++++|..+ |++++|+|+||||||||+++|+|++.     | .|+|.+++.++...  ..
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~  158 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS  158 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence            5677888888887555568999999965 99999999999999999999999985     3 49999999988632  23


Q ss_pred             HHHHHhccccCCchHH-------HHHhCC-CCCCChHHHHH-HHHHHHHHccccc----cCCCcccC-CchHHHHHHHHH
Q 023354          124 GEFLMRNGALPEERIR-------AVETGG-CPHAAIREDIS-INLGPLEELSNLF----KADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       124 ~~~~~~ig~v~q~~~~-------~i~~~g-~~~~~~~~~~~-~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~  189 (283)
                      ..+++.++|+||++..       .+.++. +......+... .+...++.+.+..    ..+..... |+||+||++|||
T Consensus       159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR  238 (329)
T PRK14257        159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR  238 (329)
T ss_pred             HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence            4567789999998742       122211 10011111111 2334455544321    22333333 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +++ +|.|+|+| |+++.|....           ...+           .++||+|++++.|++.+.|++.+++.
T Consensus       239 Al~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~  313 (329)
T PRK14257        239 AIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI  313 (329)
T ss_pred             HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            998 57777777 9998653210           0111           15699999999999999999988765

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.1e-22  Score=178.65  Aligned_cols=183  Identities=13%  Similarity=0.060  Sum_probs=124.5

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCC--CHHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~--~~~~  125 (283)
                      +...+..+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|      +|+|.+.+.++...  ....
T Consensus         8 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   85 (254)
T PRK14273          8 IETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE   85 (254)
T ss_pred             EEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence            445556555543  35788999985 4999999999999999999999999986      49999988876432  2345


Q ss_pred             HHHhccccCCchHH-------HHHhCCCCCCC-hH-HHHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERIR-------AVETGGCPHAA-IR-EDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~~-------~i~~~g~~~~~-~~-~~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +++.++|++|++..       .+.++...... .. .....+.+.++.+..    ....+..+.+ |+||+||++|||++
T Consensus        86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral  165 (254)
T PRK14273         86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL  165 (254)
T ss_pred             HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            56789999998531       12221111100 11 111233445555543    2334555666 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      + +|.++++| |+++.|....           ...+           ..+||++++++.|++...|+..+.+
T Consensus       166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        166 AIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            8 58888888 9998653211           0111           1679999999999999888776654

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.88  E-value=2.4e-22  Score=178.07  Aligned_cols=179  Identities=16%  Similarity=0.118  Sum_probs=123.9

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-------------H
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------D  123 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-------------~  123 (283)
                      ++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+             .
T Consensus         5 ~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~   82 (252)
T TIGR03005         5 DVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL   82 (252)
T ss_pred             EEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHH
Confidence            34444432  35788999985 59999999999999999999999999987 99999888775321             1


Q ss_pred             HHHHHhccccCCchH--------HHHHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc
Q 023354          124 GEFLMRNGALPEERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA  192 (283)
Q Consensus       124 ~~~~~~ig~v~q~~~--------~~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~  192 (283)
                      ..+++.++|++|++.        +.+.++..  ...........+.+.++.++.....+..+.+ |+||+||+++|++++
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~  162 (252)
T TIGR03005        83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA  162 (252)
T ss_pred             HHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHH
Confidence            245677999998753        11111100  0001111122345667777666555666666 999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          193 -DYIIYIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                       +|.++++| |+++.|...             +.+.++           .+||++++++.|++.+.|+..+.+
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T TIGR03005       163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIF  235 (252)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence             58888888 999865321             112221           579999999999998877765543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.5e-22  Score=179.61  Aligned_cols=172  Identities=17%  Similarity=0.148  Sum_probs=128.7

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc-C----C-CcEEEEeecCCCCCHHHH----HHhccccCCch
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-D----K-YSLAAVTNDIFTKEDGEF----LMRNGALPEER  137 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~-~----~-g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~  137 (283)
                      ..++++++|..+ |++++|+|.+||||||+.++|+|+++ +    . |+|.+.+.++...+..++    .+.|+++||++
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p   97 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP   97 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence            468899999855 99999999999999999999999997 3    2 789999999888876543    33699999997


Q ss_pred             HHH-----------HHhCCCCC-C-ChHHHHHHHHHHHHHcccccc---CCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          138 IRA-----------VETGGCPH-A-AIREDISINLGPLEELSNLFK---ADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       138 ~~~-----------i~~~g~~~-~-~~~~~~~~~~~~l~~l~~~~~---~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      ...           .+.-.... . ...+....+.+.|+.+++...   .+.+.-| ||||+||+.||.+++ +|.+++.
T Consensus        98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA  177 (316)
T COG0444          98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA  177 (316)
T ss_pred             hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence            411           11100000 0 122334466778888876543   3555555 999999999999998 6999998


Q ss_pred             e-CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          200 D-VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       200 D-pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      | ||+++|.             +++.+..           .++||+|+||+.|++++.|+..+++.
T Consensus       178 DEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~  243 (316)
T COG0444         178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK  243 (316)
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence            8 9998652             2223332           28999999999999999999888875

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.88  E-value=2.4e-22  Score=176.00  Aligned_cols=169  Identities=19%  Similarity=0.210  Sum_probs=115.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------H
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~  139 (283)
                      ...+++++|.- +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++.       +
T Consensus        15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e   94 (234)
T cd03251          15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAE   94 (234)
T ss_pred             ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHH
Confidence            35788999984 59999999999999999999999999987 999998887765555566778999999853       1


Q ss_pred             HHHhCCCCCCChHHHHHH------HHHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          140 AVETGGCPHAAIREDISI------NLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~------~~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      .+.+... ... ......      ..+.++.+  ......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus        95 nl~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~  172 (234)
T cd03251          95 NIAYGRP-GAT-REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE  172 (234)
T ss_pred             HhhccCC-CCC-HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence            1222111 111 111111      11223332  222223444445 999999999999999 48788887 99987532


Q ss_pred             hh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          209 RK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       209 ~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ..           .+.+          +..||++++++.|++...++..+.+
T Consensus       173 ~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  224 (234)
T cd03251         173 SERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELL  224 (234)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHH
Confidence            11           1111          2459999999999998877665543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.88  E-value=2.5e-22  Score=186.49  Aligned_cols=166  Identities=20%  Similarity=0.138  Sum_probs=120.9

Q ss_pred             cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----HHHHHHhccccCCchH--------H
Q 023354           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERI--------R  139 (283)
Q Consensus        74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~--------~  139 (283)
                      +++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++....    ....++.++|++|++.        +
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   94 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG   94 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence            677774 59999999999999999999999999987 99999988775321    1234567999999753        1


Q ss_pred             HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------
Q 023354          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------  209 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------  209 (283)
                      .+.++.. .....+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |+++.|...       
T Consensus        95 nl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~  173 (354)
T TIGR02142        95 NLRYGMK-RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPY  173 (354)
T ss_pred             HHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence            1222211 111111122455677888777767777777 999999999999998 58888888 999875321       


Q ss_pred             ------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          210 ------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       210 ------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                            +.+.+           ..+||++++++.|++.+.|++.+.+.
T Consensus       174 L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (354)
T TIGR02142       174 LERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA  221 (354)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence                  11222           15799999999999998888777654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.88  E-value=1.3e-22  Score=176.18  Aligned_cols=160  Identities=17%  Similarity=0.078  Sum_probs=112.9

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------  139 (283)
                      .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..     .++.++|++|++..       
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~~~~~~tv~   91 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVL   91 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccccccCCCHH
Confidence            35788999984 59999999999999999999999999887 999998877642     24578999987531       


Q ss_pred             -HHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354          140 -AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-----  209 (283)
Q Consensus       140 -~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-----  209 (283)
                       .+.++... ..........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...     
T Consensus        92 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~  171 (220)
T cd03293          92 DNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ  171 (220)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHH
Confidence             11111000 001111223455677777766666666666 999999999999998 58888888 999975321     


Q ss_pred             --------hcCCcc-----------cccCEEEEEc--CCcccccC
Q 023354          210 --------KGGPGI-----------TQADLLVINK--TDLASAIG  233 (283)
Q Consensus       210 --------~~~~~i-----------~~ad~ivi~K--~g~i~~~g  233 (283)
                              +.+.++           .+||++++++  .|++.+.+
T Consensus       172 ~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~  216 (220)
T cd03293         172 EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV  216 (220)
T ss_pred             HHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence                    112221           5789999988  68876643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.88  E-value=3.9e-22  Score=185.07  Aligned_cols=163  Identities=19%  Similarity=0.127  Sum_probs=120.3

Q ss_pred             cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----HHHHHHhccccCCchHHH-------
Q 023354           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIRA-------  140 (283)
Q Consensus        74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~~-------  140 (283)
                      +++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....    ....++.++|++|++..+       
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e   95 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG   95 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence            677774 59999999999999999999999999987 99999888765321    223456899999985311       


Q ss_pred             -HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--------
Q 023354          141 -VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--------  208 (283)
Q Consensus       141 -i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--------  208 (283)
                       +.++. .    ......+.+.++.+++....+..+.+ |+||+||++|||+++ +|.++++| |+++.|..        
T Consensus        96 nl~~~~-~----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~  170 (352)
T PRK11144         96 NLRYGM-A----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY  170 (352)
T ss_pred             HHHhhh-h----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence             11111 0    01112345677777776666777777 999999999999998 58888888 99986532        


Q ss_pred             -----hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          209 -----RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       209 -----~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                           ++.+.+           ..+||++++++.|++...|++.+++..
T Consensus       171 L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~  219 (352)
T PRK11144        171 LERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWAS  219 (352)
T ss_pred             HHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhC
Confidence                 111222           167999999999999999988887764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.88  E-value=3.9e-22  Score=190.09  Aligned_cols=172  Identities=20%  Similarity=0.122  Sum_probs=126.6

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhccccCCchHH-----
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGALPEERIR-----  139 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v~q~~~~-----  139 (283)
                      ..++++++|..+ ||+++|+|.+|||||||.++|+|+++|+ |.|.+++.++.-  ......++++-++||++..     
T Consensus       304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr  383 (539)
T COG1123         304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR  383 (539)
T ss_pred             eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence            357899999955 9999999999999999999999999998 999999987221  1233466788899998751     


Q ss_pred             -----HHHhCCC-CCC-ChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC--
Q 023354          140 -----AVETGGC-PHA-AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK--  206 (283)
Q Consensus       140 -----~i~~~g~-~~~-~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~--  206 (283)
                           .+.-... .+. ...+....+.+.|+.+++.. ..++...| ||||+||++|||+|+ +|.+++.| |++.+|  
T Consensus       384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs  463 (539)
T COG1123         384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS  463 (539)
T ss_pred             ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence                 1110000 000 11222234566777777665 46777888 999999999999998 69999988 888754  


Q ss_pred             -----------chhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          207 -----------IPRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       207 -----------l~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                 ++++.+.++           ..||+|++++.|++++.|+..+++.
T Consensus       464 vqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~  519 (539)
T COG1123         464 VQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFE  519 (539)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence                       334433332           7899999999999999997777665

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=2.1e-22  Score=178.55  Aligned_cols=181  Identities=15%  Similarity=0.082  Sum_probs=122.2

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCC--CCCHHHHH
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIF--TKEDGEFL  127 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~--~~~~~~~~  127 (283)
                      ..++...|..  .+.+++++|.. +|++++|+||||||||||+++|+|+++|      .|+|.+.+.++.  ......++
T Consensus         7 ~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (253)
T PRK14267          7 TVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVR   84 (253)
T ss_pred             EEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHh
Confidence            3344444432  35789999985 5999999999999999999999999886      599999988875  23344566


Q ss_pred             HhccccCCchHH--------HHHhCCCCCC---ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354          128 MRNGALPEERIR--------AVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       128 ~~ig~v~q~~~~--------~i~~~g~~~~---~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +.++|++|++..        .+.++.....   ........+.+.++.++..    ...+..+.+ |+||+||++||+++
T Consensus        85 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  164 (253)
T PRK14267         85 REVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARAL  164 (253)
T ss_pred             hceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHH
Confidence            789999997531        1111110000   1111112334455555432    224455555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      + +|.++++| |+++.|....           ...+           ..+||++++++.|++.+.|+..+.+
T Consensus       165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (253)
T PRK14267        165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF  236 (253)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            8 58888888 9998653211           1112           1579999999999999888776654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=3.3e-22  Score=176.15  Aligned_cols=179  Identities=17%  Similarity=0.108  Sum_probs=124.0

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC------CCHHHHHH
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLM  128 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~------~~~~~~~~  128 (283)
                      +.++.+.|..  ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..      ......++
T Consensus         5 ~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~   82 (242)
T PRK11124          5 LNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRR   82 (242)
T ss_pred             EEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHh
Confidence            3344555532  35788999985 59999999999999999999999999987 999999887631      11234566


Q ss_pred             hccccCCchHH--------HHHhCCC--CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          129 RNGALPEERIR--------AVETGGC--PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       129 ~ig~v~q~~~~--------~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      .++|++|++..        .+....+  ......+....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.+
T Consensus        83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l  162 (242)
T PRK11124         83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV  162 (242)
T ss_pred             heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            89999997531        1111100  0011111222445667777666556666666 999999999999998 5888


Q ss_pred             EEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHH
Q 023354          197 YIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       197 ~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                      +++| |+++.|...            +.+.++           .+||++++++.|++...|+..+
T Consensus       163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~  227 (242)
T PRK11124        163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC  227 (242)
T ss_pred             EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            8888 999875321            112221           5799999999999988776544

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.88  E-value=4.6e-22  Score=174.22  Aligned_cols=165  Identities=18%  Similarity=0.096  Sum_probs=119.1

Q ss_pred             cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHh
Q 023354           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (283)
Q Consensus        74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~  143 (283)
                      +++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....  ..+.++|++|++.        +.+.+
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~   94 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGL   94 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccccccCCcHHHHHhc
Confidence            677874 59999999999999999999999999987 999999887754333  2457999998753        12222


Q ss_pred             CCCCCCC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----------
Q 023354          144 GGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----------  209 (283)
Q Consensus       144 ~g~~~~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----------  209 (283)
                      +..+... .......+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...          
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~  174 (232)
T PRK10771         95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ  174 (232)
T ss_pred             ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            2111111 112223456677777776666777777 999999999999998 58888888 999875421          


Q ss_pred             ---hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          210 ---KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       210 ---~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                         +.+.++           .+||++++++.|++.+.|+..+.+.
T Consensus       175 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~  219 (232)
T PRK10771        175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS  219 (232)
T ss_pred             HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence               112221           5799999999999998887665554

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.88  E-value=4.4e-22  Score=193.22  Aligned_cols=185  Identities=15%  Similarity=0.064  Sum_probs=131.7

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig  131 (283)
                      +...+.+..|..  ...+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+.... ++.++
T Consensus         6 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~   83 (510)
T PRK09700          6 ISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG   83 (510)
T ss_pred             EEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence            344455555532  357899999855 9999999999999999999999999987 999999888766554433 34699


Q ss_pred             ccCCchH--------HHHHhCCCCC----C----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          132 ALPEERI--------RAVETGGCPH----A----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~----~----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      |++|++.        +.+.++....    .    ...+....+.+.++.+++....+..+.+ |+||+||+.||++++ +
T Consensus        84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~  163 (510)
T PRK09700         84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD  163 (510)
T ss_pred             EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence            9999753        2222221111    0    0112223456678888777667777777 999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhH
Q 023354          194 YIIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |.|+++| |+++.|...            +.+.++           .+||++++++.|++...|++.+.+..
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  235 (510)
T PRK09700        164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSND  235 (510)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCHH
Confidence            8888888 999976321            112221           67999999999999887776655443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.88  E-value=2.8e-22  Score=193.66  Aligned_cols=182  Identities=11%  Similarity=-0.013  Sum_probs=128.7

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ..+.++.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++
T Consensus         6 ~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~   83 (490)
T PRK10938          6 ISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW   83 (490)
T ss_pred             EEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceec
Confidence            3445555543  34789999985 59999999999999999999999999987 99988776665444455566799999


Q ss_pred             CchHHHHHhC--CCCCCChH-------HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          135 EERIRAVETG--GCPHAAIR-------EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       135 q~~~~~i~~~--g~~~~~~~-------~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                      |++.......  .....+..       .....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |+
T Consensus        84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  163 (490)
T PRK10938         84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF  163 (490)
T ss_pred             cCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            9753211000  00001111       1122455677888777667787877 999999999999998 58888888 99


Q ss_pred             CCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          203 GGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       203 ~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++.|...            +.+.++           .+||++++++.|++...|+..+.+.
T Consensus       164 ~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  224 (490)
T PRK10938        164 DGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ  224 (490)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence            9875321            112221           6799999999999988877665543

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.88  E-value=4e-22  Score=175.13  Aligned_cols=169  Identities=19%  Similarity=0.202  Sum_probs=114.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------  140 (283)
                      .+.+.+++|.. +|++++|+|+||||||||+++|+|+++|. |+|.+.+.++.......+++.++|++|++..+      
T Consensus        16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e   95 (238)
T cd03249          16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE   95 (238)
T ss_pred             ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence            35788999985 59999999999999999999999999987 99999988776555555667799999986421      


Q ss_pred             -HHhCCCCCCChHHHHHHH------HHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          141 -VETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       141 -i~~~g~~~~~~~~~~~~~------~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                       +.++. .... .......      .+.+..+  ......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus        96 ~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~  173 (238)
T cd03249          96 NIRYGK-PDAT-DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE  173 (238)
T ss_pred             HhhccC-CCCC-HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence             11111 1111 1111111      1111222  111223344445 999999999999998 58888888 99987632


Q ss_pred             h-----------hcCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          209 R-----------KGGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       209 ~-----------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .           ..+.+          +..||++++++.|++.+.++..+..
T Consensus       174 ~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  225 (238)
T cd03249         174 SEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM  225 (238)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence            1           01111          2579999999999998877655443

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.88  E-value=4.1e-22  Score=174.00  Aligned_cols=179  Identities=20%  Similarity=0.191  Sum_probs=117.7

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ..+..+.|.. ....+++++|.. +|++++|+||||||||||+++|+|+++|. |+|.+.+.++...+...+++.++|++
T Consensus         5 ~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~   83 (229)
T cd03254           5 FENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVL   83 (229)
T ss_pred             EEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEec
Confidence            3444455532 235788999985 49999999999999999999999999987 99999888776555556677899999


Q ss_pred             CchHHH-------HHhCCCCCCChHHHHHHHH------HHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354          135 EERIRA-------VETGGCPHAAIREDISINL------GPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (283)
Q Consensus       135 q~~~~~-------i~~~g~~~~~~~~~~~~~~------~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~  197 (283)
                      |++..+       +.+. .... ....+....      ..++.+  ......+..+.+ |+||+||+.+|++++ +|.++
T Consensus        84 q~~~~~~~tv~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll  161 (229)
T cd03254          84 QDTFLFSGTIMENIRLG-RPNA-TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL  161 (229)
T ss_pred             CCchhhhhHHHHHHhcc-CCCC-CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            986422       1111 1111 111111111      111111  111122333444 999999999999998 58888


Q ss_pred             EEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHH
Q 023354          198 IID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       198 llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      ++| |+++.|....           .+.+          +..||++++++.|++...++..+.
T Consensus       162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~  224 (229)
T cd03254         162 ILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL  224 (229)
T ss_pred             EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            888 9998763211           1111          256899999999999876665443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.5e-22  Score=183.92  Aligned_cols=191  Identities=20%  Similarity=0.196  Sum_probs=147.1

Q ss_pred             CCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354           50 GLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~  127 (283)
                      ...|...|..++|.|..++ +.+++.+|..+ |++++++|+.|+||||+++.|.+.+.++ |.|.+++.|+.......++
T Consensus       258 ~~~g~v~F~~V~F~y~~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR  336 (497)
T COG5265         258 VRLGAVAFINVSFAYDPRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR  336 (497)
T ss_pred             cccceEEEEEEEeeccccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHH
Confidence            6678899999999976654 77889999866 9999999999999999999999999987 9999999999988888899


Q ss_pred             HhccccCCchHHHHHh------CCCCCCChHHHHHH-HHHHHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354          128 MRNGALPEERIRAVET------GGCPHAAIREDISI-NLGPLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-  192 (283)
Q Consensus       128 ~~ig~v~q~~~~~i~~------~g~~~~~~~~~~~~-~~~~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-  192 (283)
                      +.||+|||+...++++      .|.+..+..+.... ....+..+  ...++++..++|     |||+|||++|||.+. 
T Consensus       337 ~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk  416 (497)
T COG5265         337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK  416 (497)
T ss_pred             HHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence            9999999998655543      23343333222221 11122222  135678888888     999999999999987 


Q ss_pred             CCcEEEEe-CCCCCCchhhc---------------------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          193 DYIIYIID-VSGGDKIPRKG---------------------GPGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~~~---------------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      +|.|+++| +|+.+|...+.                     ..++-.||.|++++.|++.+.|...+++..
T Consensus       417 ~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~  487 (497)
T COG5265         417 NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA  487 (497)
T ss_pred             CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence            58888888 77765432110                     123567999999999999999998887653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=2.7e-22  Score=194.52  Aligned_cols=183  Identities=10%  Similarity=0.035  Sum_probs=130.6

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC--C-CcEEEEeecCCCCCHHHH-HHh
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEF-LMR  129 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~-g~i~i~~~d~~~~~~~~~-~~~  129 (283)
                      +...++++.|.  ....+++++|.. +|++++|+||||||||||+|+|+|+++|  + |+|.+.+.++......+. ++.
T Consensus         6 l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   83 (506)
T PRK13549          6 LEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG   83 (506)
T ss_pred             EEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence            44455555553  235789999985 5999999999999999999999999986  5 999999988765544333 456


Q ss_pred             ccccCCchH--------HHHHhCCCCC----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          130 NGALPEERI--------RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       130 ig~v~q~~~--------~~i~~~g~~~----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      +||++|++.        +.+.++....    ....+....+.+.++.++.....+..+.+ |+||+||++||++++ +|.
T Consensus        84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  163 (506)
T PRK13549         84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR  163 (506)
T ss_pred             eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence            999999853        2222222111    01112223456678888776667777777 999999999999998 588


Q ss_pred             EEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          196 IYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       196 l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ++|+| |+++.|...            +.+.++           .+||++++++.|++...|+..+..
T Consensus       164 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  231 (506)
T PRK13549        164 LLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT  231 (506)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence            88888 999875321            112221           679999999999998877665543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3.7e-22  Score=176.33  Aligned_cols=180  Identities=12%  Similarity=0.078  Sum_probs=123.6

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc---CC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~---~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      .++...|..  ...+.+++|.. +|++++|+|+||||||||+++|+|+++   |+ |+|.+.+.++.......+++.++|
T Consensus         6 ~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~   83 (246)
T PRK14269          6 TNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGM   83 (246)
T ss_pred             eeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEE
Confidence            344445542  35788999984 599999999999999999999999974   45 999999988866555566778999


Q ss_pred             cCCchHH-------HHHhCCCCCC---ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          133 LPEERIR-------AVETGGCPHA---AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       133 v~q~~~~-------~i~~~g~~~~---~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      +||++..       .+.++.....   ........+.+.++.+...    ...+..+.+ |+||+||+++||+++ +|.+
T Consensus        84 ~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  163 (246)
T PRK14269         84 VFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKL  163 (246)
T ss_pred             EecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            9998631       1111100000   0011112334556666552    223444455 999999999999998 5888


Q ss_pred             EEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          197 YIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       197 ~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +++| |+++.|....           .+.+           ..+||++++++.|++.+.|+..+.+
T Consensus       164 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  229 (246)
T PRK14269        164 LLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF  229 (246)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence            8888 9998653211           1222           1679999999999999888776654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.87  E-value=3.7e-22  Score=193.41  Aligned_cols=182  Identities=15%  Similarity=0.109  Sum_probs=128.7

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig  131 (283)
                      +...+.+..|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++........ ++.++
T Consensus         5 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   82 (501)
T PRK10762          5 LQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG   82 (501)
T ss_pred             EEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence            334455555532  35788999985 49999999999999999999999999987 999999888754443333 45699


Q ss_pred             ccCCchH--------HHHHhCCCCC---C--ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          132 ALPEERI--------RAVETGGCPH---A--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~---~--~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      |++|++.        +.+.++....   .  ...+....+.+.++.+++....+..+.+ |+||+||+.||++++ +|.+
T Consensus        83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  162 (501)
T PRK10762         83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV  162 (501)
T ss_pred             EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            9999752        2222221111   0  1112223455678888777777777777 999999999999998 5888


Q ss_pred             EEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          197 YIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       197 ~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      +++| |+++.|...            +.+.++           .+||+|++++.|++...++..+.
T Consensus       163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (501)
T PRK10762        163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL  228 (501)
T ss_pred             EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence            8888 999876421            112221           68999999999999876665443

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.87  E-value=2.3e-22  Score=169.64  Aligned_cols=138  Identities=25%  Similarity=0.314  Sum_probs=102.0

Q ss_pred             CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCC
Q 023354           69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (283)
Q Consensus        69 ~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~  146 (283)
                      ...+++++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|           
T Consensus        12 ~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-----------   80 (180)
T cd03214          12 RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ-----------   80 (180)
T ss_pred             eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH-----------
Confidence            3578888998 459999999999999999999999999987 999999888876666666677888877           


Q ss_pred             CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------------h
Q 023354          147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------------K  210 (283)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------------~  210 (283)
                                    .++.++.....+..+.+ |+||+||+++||+++ +|.++++| |+++.|...             +
T Consensus        81 --------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~  146 (180)
T cd03214          81 --------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE  146 (180)
T ss_pred             --------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence                          12222222222233334 999999999999998 58888888 999865321             1


Q ss_pred             cCCcc-----------cccCEEEEEcCCcccc
Q 023354          211 GGPGI-----------TQADLLVINKTDLASA  231 (283)
Q Consensus       211 ~~~~i-----------~~ad~ivi~K~g~i~~  231 (283)
                      .+.++           +.||+++++..|.+..
T Consensus       147 ~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  178 (180)
T cd03214         147 RGKTVVMVLHDLNLAARYADRVILLKDGRIVA  178 (180)
T ss_pred             cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence            01221           5688888888877654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.87  E-value=1.2e-22  Score=175.23  Aligned_cols=158  Identities=20%  Similarity=0.121  Sum_probs=110.3

Q ss_pred             CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (283)
Q Consensus        70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (283)
                      ..+++++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..    ..++.++|++|++.        +
T Consensus        14 ~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~~~~~~tv~e   89 (210)
T cd03269          14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERGLYPKMKVID   89 (210)
T ss_pred             EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCcCCcCCcHHH
Confidence            478888988 459999999999999999999999999987 999998876532    34567999998752        1


Q ss_pred             HHHhCC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh-----
Q 023354          140 AVETGG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK-----  210 (283)
Q Consensus       140 ~i~~~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~-----  210 (283)
                      .+.+.. .......+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...+     
T Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~  169 (210)
T cd03269          90 QLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKD  169 (210)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence            111110 00001111222445567777665555666666 999999999999998 58888888 9998764211     


Q ss_pred             -------cCCc-----------ccccCEEEEEcCCcccc
Q 023354          211 -------GGPG-----------ITQADLLVINKTDLASA  231 (283)
Q Consensus       211 -------~~~~-----------i~~ad~ivi~K~g~i~~  231 (283)
                             .+.+           ..+||++++++.|++.+
T Consensus       170 ~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~  208 (210)
T cd03269         170 VIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL  208 (210)
T ss_pred             HHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence                   1111           15688888888887765

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=3e-22  Score=177.52  Aligned_cols=185  Identities=14%  Similarity=0.073  Sum_probs=123.8

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC--CCH
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KED  123 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~--~~~  123 (283)
                      +.+...++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|++.     |+ |+|.+.+.++..  ...
T Consensus         5 ~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          5 PKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             cEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            34555666666643  35789999985 599999999999999999999999864     45 999999887753  223


Q ss_pred             HHHHHhccccCCchH-------HHHHhCCCCC-C-ChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHH
Q 023354          124 GEFLMRNGALPEERI-------RAVETGGCPH-A-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       124 ~~~~~~ig~v~q~~~-------~~i~~~g~~~-~-~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~  189 (283)
                      ..+++.++|++|++.       +.+.++.... . ........+.+.++.+++..    ..+..+.+ |+||+||+.+|+
T Consensus        83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar  162 (253)
T PRK14242         83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR  162 (253)
T ss_pred             HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence            455678999999752       1111111000 0 11111223344555554421    23445555 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +++ +|.++++| |+++.|....           .+.++           ++||++++++.|++.+.|+..+.+
T Consensus       163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14242        163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF  236 (253)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            998 58888888 9998753211           11121           679999999999998877765543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.87  E-value=6.8e-22  Score=188.47  Aligned_cols=173  Identities=19%  Similarity=0.195  Sum_probs=130.7

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC-----CCcEEEEeecCCCCCHHHH----HHhccccCCchH
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD-----KYSLAAVTNDIFTKEDGEF----LMRNGALPEERI  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~g~i~i~~~d~~~~~~~~~----~~~ig~v~q~~~  138 (283)
                      ..++++++|... ||++||+|.+||||||+.++|.|++++     +|+|.+.+.++...+..+.    .++|+++||++.
T Consensus        22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~  101 (539)
T COG1123          22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM  101 (539)
T ss_pred             eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence            458899999955 999999999999999999999999874     3899999998877765443    246999999974


Q ss_pred             HH----------H-HhCCCCC-CChHHHHHHHHHHHHHccccccCCC--cccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          139 RA----------V-ETGGCPH-AAIREDISINLGPLEELSNLFKADL--LLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       139 ~~----------i-~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~--~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                      ..          + +...... ....+...++.+.|+.+++.+....  +.-+ ||||+||+.||++|+ +|.+++.| |
T Consensus       102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP  181 (539)
T COG1123         102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP  181 (539)
T ss_pred             hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence            11          1 1000000 1123344567788888887665443  6666 999999999999998 69999998 9


Q ss_pred             CCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          202 SGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       202 t~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |+++|.             .++.+..           .++||+|++|+.|.+++.|+..+++.+
T Consensus       182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~  245 (539)
T COG1123         182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN  245 (539)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhc
Confidence            998652             2233322           178999999999999999999988863

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.87  E-value=4.9e-22  Score=181.24  Aligned_cols=171  Identities=19%  Similarity=0.214  Sum_probs=135.7

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHH---HHHHhccccCCchH-------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDG---EFLMRNGALPEERI-------  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~-------  138 (283)
                      .+.++++|.- +|+.+||+|.+|||||||-.+|+++++++|.|.+.+.++...+..   .+++++-+|||+|+       
T Consensus       301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm  380 (534)
T COG4172         301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM  380 (534)
T ss_pred             EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc
Confidence            4678888885 499999999999999999999999999999999999999876543   45778999999985       


Q ss_pred             ---HHHHhCCC---CCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC--
Q 023354          139 ---RAVETGGC---PHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK--  206 (283)
Q Consensus       139 ---~~i~~~g~---~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~--  206 (283)
                         ..+.-|..   +..+..+...++.++|.++++.. ..+++.-| ||||+||++|||+++ .|.++++| ||+.+|  
T Consensus       381 tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~S  460 (534)
T COG4172         381 TVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS  460 (534)
T ss_pred             CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHH
Confidence               22222222   22344556668889999998765 46778888 999999999999998 68888888 998753  


Q ss_pred             -----------chhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          207 -----------IPRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       207 -----------l~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                 ++++.+..+           ..|++|++|+.|++++.|+..++|.
T Consensus       461 VQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~  516 (534)
T COG4172         461 VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA  516 (534)
T ss_pred             HHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence                       333433221           6899999999999999999988875

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.87  E-value=9.1e-22  Score=169.82  Aligned_cols=156  Identities=19%  Similarity=0.140  Sum_probs=111.1

Q ss_pred             ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHh
Q 023354           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (283)
Q Consensus        74 ~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~  143 (283)
                      +++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++.        +.+.+
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~   93 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL   93 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence            67777 459999999999999999999999999987 999999888765433  2467999999853        11222


Q ss_pred             CCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----------
Q 023354          144 GGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----------  209 (283)
Q Consensus       144 ~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----------  209 (283)
                      +....... ......+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...          
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  173 (211)
T cd03298          94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD  173 (211)
T ss_pred             ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            21111111 11223455677777766666666666 999999999999998 58888888 999865321          


Q ss_pred             ---hcCCcc-----------cccCEEEEEcCCcccc
Q 023354          210 ---KGGPGI-----------TQADLLVINKTDLASA  231 (283)
Q Consensus       210 ---~~~~~i-----------~~ad~ivi~K~g~i~~  231 (283)
                         +.+.++           .+||++++++.|++..
T Consensus       174 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~  209 (211)
T cd03298         174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA  209 (211)
T ss_pred             HHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence               112221           5689999999888765

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.87  E-value=6.1e-22  Score=195.19  Aligned_cols=187  Identities=17%  Similarity=0.148  Sum_probs=134.0

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|++. .+.+++.+|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus       332 ~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  410 (585)
T TIGR01192       332 KGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS  410 (585)
T ss_pred             CCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhh
Confidence            3457788889988754 35789999985 59999999999999999999999999997 999999999888888888899


Q ss_pred             ccccCCchHHH------HHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIRA------VETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      ++|++|++..+      +..-+.+..+. +.+....+  .+.++.  ...+++..+.+     ||||+||+++||+++ +
T Consensus       411 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~-~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~  489 (585)
T TIGR01192       411 IATVFQDAGLFNRSIRENIRLGREGATD-EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN  489 (585)
T ss_pred             eEEEccCCccCcccHHHHHhcCCCCCCH-HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999997411      11222232222 22211111  122211  12344555544     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.++++| ||++.|...+           .+.+          +..||+|+++..|++.+.|+..+.+.
T Consensus       490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  558 (585)
T TIGR01192       490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ  558 (585)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHH
Confidence            7777777 9998653211           1111          36799999999999999888766543

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.87  E-value=1.2e-22  Score=176.48  Aligned_cols=175  Identities=18%  Similarity=0.116  Sum_probs=115.7

Q ss_pred             ccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      ...+..+.|.......+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|+
T Consensus         4 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   83 (221)
T cd03244           4 EFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISII   83 (221)
T ss_pred             EEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEE
Confidence            3444555555444468899999854 9999999999999999999999999987 9999998877665666677889999


Q ss_pred             CCchHHH----HHhCCCCCCChHHHHHHHHHHHHHccccc-----------cCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          134 PEERIRA----VETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       134 ~q~~~~~----i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-----------~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      +|++..+    .+.-........+   .+.+.++.+....           ..+..+.. |+||+||+.+|++++ +|.+
T Consensus        84 ~q~~~l~~~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l  160 (221)
T cd03244          84 PQDPVLFSGTIRSNLDPFGEYSDE---ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI  160 (221)
T ss_pred             CCCCccccchHHHHhCcCCCCCHH---HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            9986411    0000000011111   1222233322211           11223334 999999999999998 5888


Q ss_pred             EEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccC
Q 023354          197 YIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIG  233 (283)
Q Consensus       197 ~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g  233 (283)
                      +++| |+++.|....           ...+          +..||++++++.|++.+.|
T Consensus       161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~  219 (221)
T cd03244         161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFD  219 (221)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecC
Confidence            8887 9998653211           0111          2457888888888877654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.87  E-value=4e-22  Score=173.01  Aligned_cols=169  Identities=20%  Similarity=0.193  Sum_probs=111.1

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .+....|.......+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|
T Consensus         6 ~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q   85 (220)
T cd03245           6 RNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ   85 (220)
T ss_pred             EEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCC
Confidence            3444445433345788999985 59999999999999999999999999887 999998887755455556678999999


Q ss_pred             chHH-------HHHhCCCCCCChHHHHHHHHHHHHHccccccCCC-----------cccC-CchHHHHHHHHHHhc-CCc
Q 023354          136 ERIR-------AVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       136 ~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~-----------~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      ++..       .+.+. .... ...   .+.+.++.+......+.           .+.+ |+||+||+.+|++++ +|.
T Consensus        86 ~~~~~~~tv~e~l~~~-~~~~-~~~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~  160 (220)
T cd03245          86 DVTLFYGTLRDNITLG-APLA-DDE---RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP  160 (220)
T ss_pred             CCccccchHHHHhhcC-CCCC-CHH---HHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence            8631       11111 1111 111   12233333333222222           1234 999999999999998 588


Q ss_pred             EEEEe-CCCCCCchhh---------c--CCc----------ccccCEEEEEcCCcccc
Q 023354          196 IYIID-VSGGDKIPRK---------G--GPG----------ITQADLLVINKTDLASA  231 (283)
Q Consensus       196 l~llD-pt~g~~l~~~---------~--~~~----------i~~ad~ivi~K~g~i~~  231 (283)
                      ++++| |+++.|....         .  ..+          +++||++++++.|.+.+
T Consensus       161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~  218 (220)
T cd03245         161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA  218 (220)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence            88888 9998754211         0  011          15677777777777654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.87  E-value=2.9e-22  Score=195.28  Aligned_cols=155  Identities=23%  Similarity=0.262  Sum_probs=117.1

Q ss_pred             CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+.+.+++|.|++..++.+++++|..+ |++++|+||+|||||||+++|+|+++|+ |+|.+++.++...+..++++.+
T Consensus       319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i  398 (529)
T TIGR02857       319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI  398 (529)
T ss_pred             CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence            4688899999998766678999999854 9999999999999999999999999998 9999999999988888899999


Q ss_pred             cccCCchHH------HHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354          131 GALPEERIR------AVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       131 g~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~  194 (283)
                      +|++|++..      .+.+.+.+..+ .+.+..+.+  .+.++.  ...++|..+.|     ||||+||+++||+++ +|
T Consensus       399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~-~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~  477 (529)
T TIGR02857       399 AWVPQHPFLFAGTIAENIRLARPDAS-DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA  477 (529)
T ss_pred             EEEcCCCcccCcCHHHHHhccCCCCC-HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence            999999742      22222233222 222221111  122221  12356777765     999999999999998 47


Q ss_pred             cEEEEe-CCCCCCch
Q 023354          195 IIYIID-VSGGDKIP  208 (283)
Q Consensus       195 ~l~llD-pt~g~~l~  208 (283)
                      .++++| ||++.|..
T Consensus       478 ~ililDE~ts~lD~~  492 (529)
T TIGR02857       478 PLLLLDEPTAHLDAE  492 (529)
T ss_pred             CEEEEeCcccccCHH
Confidence            777777 99987643

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.87  E-value=4e-22  Score=172.28  Aligned_cols=133  Identities=25%  Similarity=0.263  Sum_probs=97.7

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------  139 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.     .+++.++|++|++..        
T Consensus        13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv   87 (213)
T cd03235          13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISV   87 (213)
T ss_pred             EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCcH
Confidence            4788899985 59999999999999999999999999987 99998876553     355679999997521        


Q ss_pred             --HHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          140 --AVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       140 --~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                        .+..+.....     ........+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|.
T Consensus        88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~  165 (213)
T cd03235          88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP  165 (213)
T ss_pred             HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence              1112111100     0111223445667777666556666666 999999999999998 58888888 9999764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.87  E-value=7.9e-22  Score=172.57  Aligned_cols=166  Identities=14%  Similarity=0.064  Sum_probs=114.8

Q ss_pred             cccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----C-CcEEEEeecCCCCCHHHHHHhccccCCchHH-H----
Q 023354           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-A----  140 (283)
Q Consensus        72 ~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-~----  140 (283)
                      +++++|.. +|++++|+||||||||||+++|+|+++|    + |+|.+.+.++...  ...++.++|++|++.. +    
T Consensus         2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCccc
Confidence            45677774 5999999999999999999999999988    5 9999988876532  1223579999998631 1    


Q ss_pred             -----HHhCC-CCCCChHHHHHHHHHHHHHcccc---ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          141 -----VETGG-CPHAAIREDISINLGPLEELSNL---FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       141 -----i~~~g-~~~~~~~~~~~~~~~~l~~l~~~---~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                           +.... ............+.+.++.++..   ...+..+.+ |+||+||++||++++ +|.|+++| |+++.|..
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~  159 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV  159 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence                 00000 00000111222455667777654   334556666 999999999999998 58888888 99986532


Q ss_pred             h-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          209 R-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       209 ~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .             +.+.++           .+||++++++.|++...|++.+.+
T Consensus       160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            1             112221           579999999999999888765554

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=4.6e-22  Score=177.16  Aligned_cols=185  Identities=12%  Similarity=0.053  Sum_probs=125.9

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC--CCH
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KED  123 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~--~~~  123 (283)
                      +.+...+..+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++     |+ |+|.+.+.++..  ...
T Consensus        12 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~   89 (260)
T PRK10744         12 SKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI   89 (260)
T ss_pred             ceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence            44556666666643  35788999985 599999999999999999999999986     34 999999887753  233


Q ss_pred             HHHHHhccccCCchHH-------HHHhCCCC--CCChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHH
Q 023354          124 GEFLMRNGALPEERIR-------AVETGGCP--HAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       124 ~~~~~~ig~v~q~~~~-------~i~~~g~~--~~~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~  189 (283)
                      ..+++.++|++|++..       .+.++...  .....+....+.+.++.+...    ...+..+.+ |+||+||+.||+
T Consensus        90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  169 (260)
T PRK10744         90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR  169 (260)
T ss_pred             HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence            4567789999998531       11111000  011111112344556665432    234455555 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +++ +|.++++| |+++.|....           ...++           .+||++++++.|++...|+..+.+
T Consensus       170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  243 (260)
T PRK10744        170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF  243 (260)
T ss_pred             HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            998 58888888 9998653211           11121           579999999999999887765544

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.87  E-value=1.1e-22  Score=217.51  Aligned_cols=186  Identities=15%  Similarity=0.122  Sum_probs=142.6

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhc
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      .|.+.+.++++.|+....+++++++|..+ |++|+|+|++|||||||+++|+|++.++|+|.+++.|+...+...+|+++
T Consensus      1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271      1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred             CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhce
Confidence            46789999999998877789999999965 99999999999999999999999997569999999999999999999999


Q ss_pred             cccCCchHHHHHh---CCCCCC-ChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHHHHHHhcC-
Q 023354          131 GALPEERIRAVET---GGCPHA-AIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRELAD-  193 (283)
Q Consensus       131 g~v~q~~~~~i~~---~g~~~~-~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ia~al~~-  193 (283)
                      +++||++..+-.+   +-.+.. ...+   .+.++|+...+       ..++|..+.|     |+||+||+++||+++. 
T Consensus      1295 s~IpQdp~LF~GTIR~NLdp~~~~tde---ei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271      1295 GVIPQKVFIFSGTFRKNLDPYEQWSDE---EIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred             EEEeCCCccCccCHHHHhCcccCCCHH---HHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence            9999998532110   011111 1112   22334443322       2467777876     9999999999999995 


Q ss_pred             CcEEEEe-CCCCCCchh----------hc-C----------CcccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPR----------KG-G----------PGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~----------~~-~----------~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +.|+++| ||++.|...          .. .          .++..||+|++++.|++.+.|++.+++.
T Consensus      1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1372 AKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            7777777 998865321          11 1          1236799999999999999999988774

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=4.8e-22  Score=176.86  Aligned_cols=184  Identities=14%  Similarity=0.077  Sum_probs=124.4

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCCC--HH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE--DG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~~--~~  124 (283)
                      .+...++.+.|..  ...+.+++|.. +|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++....  ..
T Consensus        12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   89 (258)
T PRK14268         12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV   89 (258)
T ss_pred             eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence            3555566666542  35789999985 5999999999999999999999999874     4 99999888765321  23


Q ss_pred             HHHHhccccCCchHH-------HHHhCCCCC-CChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354          125 EFLMRNGALPEERIR-------AVETGGCPH-AAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       125 ~~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      .+++.++|++|++..       .+.++.... .........+.+.++.+...    ...+..+.+ |+||+||+++|+++
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  169 (258)
T PRK14268         90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL  169 (258)
T ss_pred             HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence            456779999997531       111110000 01111112334456655442    234555556 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      + +|.++++| |+++.|...+           .+.+           ..+||++++++.|++.+.|++.+.+
T Consensus       170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  241 (258)
T PRK14268        170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF  241 (258)
T ss_pred             HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            8 58888888 9998653211           1122           1679999999999999888776554

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.4e-22  Score=177.22  Aligned_cols=163  Identities=21%  Similarity=0.164  Sum_probs=121.7

Q ss_pred             ccccccCCC-cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----HHHHHHhccccCCchHHHHHhCCC
Q 023354           73 LSRNFNERA-FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIRAVETGGC  146 (283)
Q Consensus        73 ~~~~~~~~g-~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~~i~~~g~  146 (283)
                      -+.+|..++ .+++|-|++|||||||+|+|+|+.+|+ |.|.+++.-+....    -..-++++|||||+.-.|      
T Consensus        15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLF------   88 (352)
T COG4148          15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF------   88 (352)
T ss_pred             EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccc------
Confidence            356777776 799999999999999999999999998 99999887654322    122357899999985322      


Q ss_pred             CCCChHH---------HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhhcCCc
Q 023354          147 PHAAIRE---------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGPG  214 (283)
Q Consensus       147 ~~~~~~~---------~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~~~~~  214 (283)
                      |+.+++.         ........+..++..+..++.... |||++||++|+|||. .|.++|+| |.+..|.+++....
T Consensus        89 pH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil  168 (352)
T COG4148          89 PHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL  168 (352)
T ss_pred             cceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH
Confidence            2221111         111233456667777777777777 999999999999998 58888888 88877665442110


Q ss_pred             ------------------------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          215 ------------------------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       215 ------------------------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                                              .+.||+||++..|++.+.|...+++..
T Consensus       169 pylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~  219 (352)
T COG4148         169 PYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS  219 (352)
T ss_pred             HHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence                                    289999999999999999988888764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.87  E-value=5.1e-22  Score=196.94  Aligned_cols=171  Identities=18%  Similarity=0.118  Sum_probs=125.2

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchH------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERI------  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~------  138 (283)
                      .++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......   .+++.++|+||++.      
T Consensus       338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~  417 (623)
T PRK10261        338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR  417 (623)
T ss_pred             EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence            4788999985 49999999999999999999999999987 9999999887655432   24567999999852      


Q ss_pred             ----HHHHhCC-CCCC-ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          139 ----RAVETGG-CPHA-AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       139 ----~~i~~~g-~~~~-~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                          +.+..+. .... ...+....+.+.|+.+++. ...++.+.+ ||||+||++||++|+ +|.|+|+| |+++.|..
T Consensus       418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~  497 (623)
T PRK10261        418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVS  497 (623)
T ss_pred             CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence                1111110 0000 1112223455678888774 456777777 999999999999998 58888888 99987532


Q ss_pred             -------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          209 -------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 -------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                   ++.+.++           .+||+|++++.|++++.|++.+++.
T Consensus       498 ~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~  553 (623)
T PRK10261        498 IRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFE  553 (623)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence                         1212221           6799999999999999888877654

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=6.7e-22  Score=176.59  Aligned_cols=190  Identities=11%  Similarity=0.054  Sum_probs=125.5

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC
Q 023354           48 HDGLAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT  120 (283)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~  120 (283)
                      .+|..+.+...++.+.|..  .+.+.+++|.. +|++++|+|+||||||||+++|+|++.     |+ |+|.+.+.++..
T Consensus         4 ~~~~~~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~   81 (264)
T PRK14243          4 LNGTETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA   81 (264)
T ss_pred             cCCCceEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence            4455556667777766643  35788999985 599999999999999999999999875     34 999998877642


Q ss_pred             --CCHHHHHHhccccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHH
Q 023354          121 --KEDGEFLMRNGALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAAN  186 (283)
Q Consensus       121 --~~~~~~~~~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~  186 (283)
                        .....+++.++|++|++..       .+.++.............+...++.+...    ...+..+.+ |+||+||++
T Consensus        82 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~  161 (264)
T PRK14243         82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLC  161 (264)
T ss_pred             cccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHH
Confidence              2344567789999997531       11111110000011111222333433321    223445555 999999999


Q ss_pred             HHHHhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEc---------CCcccccC
Q 023354          187 FSRELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINK---------TDLASAIG  233 (283)
Q Consensus       187 ia~al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K---------~g~i~~~g  233 (283)
                      ||++++ +|.++++| |+++.|...+           ...+           ..+||++++++         .|.+++.|
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~  241 (264)
T PRK14243        162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFD  241 (264)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeC
Confidence            999998 58888888 9998653211           0112           17899999998         78888888


Q ss_pred             ChHHHH
Q 023354          234 ADLAVM  239 (283)
Q Consensus       234 ~~~e~~  239 (283)
                      +..+++
T Consensus       242 ~~~~~~  247 (264)
T PRK14243        242 RTEKIF  247 (264)
T ss_pred             CHHHHH
Confidence            776664

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.87  E-value=2.5e-22  Score=179.50  Aligned_cols=191  Identities=21%  Similarity=0.242  Sum_probs=144.4

Q ss_pred             CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA  149 (283)
Q Consensus        71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~  149 (283)
                      ..++..|..+ +.+++|+|+|||||||||+.|++.++....+.++.+|+.+..|.++.+..|.    +...+ ..||.|+
T Consensus        93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~----pvvqi-~tG~~Ch  167 (290)
T PRK10463         93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGT----PAIQV-NTGKGCH  167 (290)
T ss_pred             HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCC----cEEEe-cCCCCCc
Confidence            3455556555 8999999999999999999999988777788888999887777777666553    12233 4466666


Q ss_pred             ChHHHHHHHHHHHHHccccccCCCcccCCchH-HHHHHHHHHhc-CCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCC
Q 023354          150 AIREDISINLGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD  227 (283)
Q Consensus       150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq-~q~~~ia~al~-~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g  227 (283)
                      ....++.   .++..+. ....|++++|+.|. .-+..  ..+. +..+.+++.+.|++.+.++..+++.||.+|+||.|
T Consensus       168 l~a~mv~---~Al~~L~-~~~~d~liIEnvGnLvcPa~--fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiD  241 (290)
T PRK10463        168 LDAQMIA---DAAPRLP-LDDNGILFIENVGNLVCPAS--FDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVD  241 (290)
T ss_pred             CcHHHHH---HHHHHHh-hcCCcEEEEECCCCccCCCc--cchhhceeEEEEECccccccchhccchhhcCcEEEEEhHH
Confidence            6554443   4455553 24569999998874 12222  1233 35689999999988777888899999999999999


Q ss_pred             cccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          228 LASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       228 ~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      ++.+.....+.+.+.+...++.++++.+|+++|+|+++|++||..
T Consensus       242 Ll~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        242 LLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            986543456667777888899999999999999999999999976

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.87  E-value=7.1e-22  Score=175.66  Aligned_cols=183  Identities=13%  Similarity=0.063  Sum_probs=125.9

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC----------C
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK----------E  122 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~----------~  122 (283)
                      +...++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...          .
T Consensus         6 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   83 (257)
T PRK10619          6 LNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD   83 (257)
T ss_pred             EEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence            444555555542  35788899985 59999999999999999999999999987 9999988776421          1


Q ss_pred             ---HHHHHHhccccCCchH--------HHHHhCCC--CCCChHHHHHHHHHHHHHccccccC-CCcccC-CchHHHHHHH
Q 023354          123 ---DGEFLMRNGALPEERI--------RAVETGGC--PHAAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANF  187 (283)
Q Consensus       123 ---~~~~~~~ig~v~q~~~--------~~i~~~g~--~~~~~~~~~~~~~~~l~~l~~~~~~-d~~i~e-SgGq~q~~~i  187 (283)
                         ...+++.++|++|++.        +.+.++..  ...........+.+.++.++..... +..+.+ |+||+||+++
T Consensus        84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l  163 (257)
T PRK10619         84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  163 (257)
T ss_pred             chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence               1345678999999853        11111110  0011111222445677777665543 555666 9999999999


Q ss_pred             HHHhc-CCcEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          188 SRELA-DYIIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       188 a~al~-~~~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      |++++ +|.++++| |+++.|...            +.+.++           .+||++++++.|++++.|+..+.+
T Consensus       164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  240 (257)
T PRK10619        164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF  240 (257)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence            99998 58888888 999875321            112221           579999999999999877765543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.87  E-value=8.1e-22  Score=170.50  Aligned_cols=161  Identities=16%  Similarity=0.128  Sum_probs=113.8

Q ss_pred             cccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHH
Q 023354           72 ILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (283)
Q Consensus        72 ~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i  141 (283)
                      +.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....  .+++.++|++|++.        +.+
T Consensus        14 ~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~   91 (213)
T TIGR01277        14 PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNI   91 (213)
T ss_pred             ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHH
Confidence            35677874 59999999999999999999999999987 99999888775432  24567999999853        112


Q ss_pred             HhCCCCCCC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh--------
Q 023354          142 ETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR--------  209 (283)
Q Consensus       142 ~~~g~~~~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~--------  209 (283)
                      .++...... .......+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...        
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l  171 (213)
T TIGR01277        92 GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV  171 (213)
T ss_pred             HhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence            121111111 111222445577777776666776666 999999999999998 58888888 999865321        


Q ss_pred             -----hcCCc-----------ccccCEEEEEcCCcccccCC
Q 023354          210 -----KGGPG-----------ITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       210 -----~~~~~-----------i~~ad~ivi~K~g~i~~~g~  234 (283)
                           +.+.+           ..+||++++++.|++.+.|+
T Consensus       172 ~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       172 KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence                 11222           15789999999998877543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.87  E-value=7.8e-22  Score=191.51  Aligned_cols=182  Identities=16%  Similarity=0.104  Sum_probs=130.8

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH-Hhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~-~~ig  131 (283)
                      +...+..+.|..  ...+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.++........+ +.+|
T Consensus        12 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   89 (510)
T PRK15439         12 LCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY   89 (510)
T ss_pred             EEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence            444455555532  35788999985 59999999999999999999999999987 9999998887655544443 3589


Q ss_pred             ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      |++|++.        +.+.++..   ...+....+.+.++.+++....+..+.+ |+||+||+.||++|+ +|.++|+| 
T Consensus        90 ~v~q~~~~~~~~tv~e~l~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE  166 (510)
T PRK15439         90 LVPQEPLLFPNLSVKENILFGLP---KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE  166 (510)
T ss_pred             EEeccCccCCCCcHHHHhhcccc---cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            9999853        11222111   0111123455677888777667777777 999999999999998 58888888 


Q ss_pred             CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          201 VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       201 pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |+++.|...            +.+.+           ..+||++++++.|.+.+.|+..+....
T Consensus       167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (510)
T PRK15439        167 PTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD  230 (510)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH
Confidence            999976321            11222           167999999999999888877665443

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.87  E-value=1.5e-21  Score=173.65  Aligned_cols=189  Identities=15%  Similarity=0.073  Sum_probs=127.3

Q ss_pred             CCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354           51 LAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~  128 (283)
                      ..+.+.+.+..+.|.......+.+++|.. +|++++|+|+||||||||+++|+|+++|. |+|.+.+.++...+...+++
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~   95 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS   95 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence            34667777777777654456889999985 59999999999999999999999999987 99999998887666667778


Q ss_pred             hccccCCchHHHHHh----CCCCCCChHHHHHHH------HHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354          129 RNGALPEERIRAVET----GGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       129 ~ig~v~q~~~~~i~~----~g~~~~~~~~~~~~~------~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      .++|++|++..+-.+    -..............      .+.+..+  ......+....+ |+||+||+++|++++ +|
T Consensus        96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  175 (257)
T cd03288          96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS  175 (257)
T ss_pred             hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            899999986321100    000000011111111      1112221  111112222334 999999999999998 48


Q ss_pred             cEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          195 IIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .++++| |+++.|....           ...+          +..||++++++.|++.+.|+..+.+
T Consensus       176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~  242 (257)
T cd03288         176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLL  242 (257)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            888887 9998653211           1111          2459999999999999888766554

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=9e-22  Score=176.04  Aligned_cols=197  Identities=12%  Similarity=-0.008  Sum_probs=135.5

Q ss_pred             CCcccCCCCCCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEE
Q 023354           42 GRVYHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAV  114 (283)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~  114 (283)
                      .|+.++.+.....+...++.+.|..  .+.+++++|.. +|++++|+|+||||||||+++|+|+++     |+ |+|.+.
T Consensus         8 ~~~~~~~~~~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~   85 (267)
T PRK14237          8 ERHIITFPEEEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYR   85 (267)
T ss_pred             cceeEecCCCCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEEC
Confidence            3566677776677788888777742  46889999985 599999999999999999999999986     35 999999


Q ss_pred             eecCCCC--CHHHHHHhccccCCchHH-------HHHhCCCCC-CChHHH-HHHHHHHHHHcccc----ccCCCcccC-C
Q 023354          115 TNDIFTK--EDGEFLMRNGALPEERIR-------AVETGGCPH-AAIRED-ISINLGPLEELSNL----FKADLLLCE-S  178 (283)
Q Consensus       115 ~~d~~~~--~~~~~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~~-~~~~~~~l~~l~~~----~~~d~~i~e-S  178 (283)
                      +.++...  ....+++.++|++|++..       .+.++.... ...... ...+.+.++.+.+.    ...+..+.+ |
T Consensus        86 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS  165 (267)
T PRK14237         86 GIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLS  165 (267)
T ss_pred             CEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCC
Confidence            8877432  233456789999997531       111110000 001111 12334455555442    234555555 9


Q ss_pred             chHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCC
Q 023354          179 GGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       179 gGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~  234 (283)
                      +||+||+++|++++ +|.++++| |+++.|....           ...+           ..+||++++++.|++.+.|+
T Consensus       166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~  245 (267)
T PRK14237        166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK  245 (267)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence            99999999999998 58888888 9998754211           1111           16799999999999999888


Q ss_pred             hHHHHh
Q 023354          235 DLAVME  240 (283)
Q Consensus       235 ~~e~~~  240 (283)
                      ..+.+.
T Consensus       246 ~~~~~~  251 (267)
T PRK14237        246 TRNIFT  251 (267)
T ss_pred             HHHHhc
Confidence            766543

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.87  E-value=8.4e-22  Score=174.68  Aligned_cols=181  Identities=18%  Similarity=0.148  Sum_probs=122.8

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec-----CCCCCHHHH--
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND-----IFTKEDGEF--  126 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d-----~~~~~~~~~--  126 (283)
                      ...++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.+     +......+.  
T Consensus         5 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   82 (253)
T TIGR02323         5 QVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR   82 (253)
T ss_pred             EEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence            34455555543  24688899985 59999999999999999999999999987 999998866     544443322  


Q ss_pred             --HHhccccCCchHH----------HHHhC--CCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHH
Q 023354          127 --LMRNGALPEERIR----------AVETG--GCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       127 --~~~ig~v~q~~~~----------~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                        ++.++|++|++..          .+...  .............+.+.++.++.. ...+..+.+ |+||+||++||++
T Consensus        83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara  162 (253)
T TIGR02323        83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN  162 (253)
T ss_pred             hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence              3468999997521          11000  000000111123445667777664 355666666 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          191 LA-DYIIYIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      ++ +|.++++| |+++.|...             +.+.++           .+||++++++.|++...++..+.
T Consensus       163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~  236 (253)
T TIGR02323       163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQV  236 (253)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHH
Confidence            98 58888888 999865321             112221           47999999999999887766544

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=5.7e-22  Score=176.46  Aligned_cols=185  Identities=14%  Similarity=0.055  Sum_probs=125.8

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~~  124 (283)
                      .+...++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|      .|+|.+.+.++..  ....
T Consensus        12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~   89 (259)
T PRK14274         12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV   89 (259)
T ss_pred             eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence            4556666666643  35789999985 5999999999999999999999999862      4999999887753  2334


Q ss_pred             HHHHhccccCCchHH-------HHHhCCCCCC-Ch-HHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHH
Q 023354          125 EFLMRNGALPEERIR-------AVETGGCPHA-AI-REDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       125 ~~~~~ig~v~q~~~~-------~i~~~g~~~~-~~-~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                      .+++.++|++|++..       .+.++..... .. .+....+.+.++.++..    ...+..+.+ |+||+||+.+|++
T Consensus        90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lara  169 (259)
T PRK14274         90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARA  169 (259)
T ss_pred             HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence            556789999998531       1111111111 01 11112333455555432    224555555 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.++++| |+++.|...+           ...+           ..+||++++++.|++...|++.+.+.
T Consensus       170 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  243 (259)
T PRK14274        170 LATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS  243 (259)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence            98 58888888 9998764211           0112           15799999999999999888776543

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.87  E-value=1.3e-21  Score=174.35  Aligned_cols=181  Identities=14%  Similarity=0.158  Sum_probs=126.3

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC----CcEEEEeecCCCC-----CHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTK-----EDG  124 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~----g~i~i~~~d~~~~-----~~~  124 (283)
                      +...++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+    |+|.+.+.++...     ...
T Consensus         5 l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (262)
T PRK09984          5 IRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR   82 (262)
T ss_pred             EEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence            344455555532  35788999984 59999999999999999999999999863    8999998876432     123


Q ss_pred             HHHHhccccCCchH--------HHHHhCCCC---C-----C-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHH
Q 023354          125 EFLMRNGALPEERI--------RAVETGGCP---H-----A-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAAN  186 (283)
Q Consensus       125 ~~~~~ig~v~q~~~--------~~i~~~g~~---~-----~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~  186 (283)
                      .+++.++|+||++.        +.+.++...   .     . ...+....+.+.++.++.....+..+.+ |+||+||+.
T Consensus        83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  162 (262)
T PRK09984         83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA  162 (262)
T ss_pred             HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence            45667999999853        112221110   0     0 0111223456677777776666777766 999999999


Q ss_pred             HHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHH
Q 023354          187 FSRELA-DYIIYIID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       187 ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                      ||++++ +|.|+|+| |+++.|..             .+.+.+           ..+||++++++.|++...|+..+
T Consensus       163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~  239 (262)
T PRK09984        163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ  239 (262)
T ss_pred             HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            999998 58888888 99987532             111222           16799999999999988877654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.87  E-value=1.1e-21  Score=171.78  Aligned_cols=158  Identities=15%  Similarity=0.117  Sum_probs=111.4

Q ss_pred             cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHH
Q 023354           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVE  142 (283)
Q Consensus        73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~  142 (283)
                      ++++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....     ..+|++|++.        +.+.
T Consensus         2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l~   76 (230)
T TIGR01184         2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENIA   76 (230)
T ss_pred             CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHHH
Confidence            456676 459999999999999999999999999987 999998887754322     2378888742        1222


Q ss_pred             hCC---CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--------
Q 023354          143 TGG---CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--------  208 (283)
Q Consensus       143 ~~g---~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--------  208 (283)
                      ++.   .......+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..        
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~  156 (230)
T TIGR01184        77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE  156 (230)
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence            210   11111112222345677777776666777777 999999999999998 58888888 99986532        


Q ss_pred             -----hhcCCcc-----------cccCEEEEEcCCcccccCCh
Q 023354          209 -----RKGGPGI-----------TQADLLVINKTDLASAIGAD  235 (283)
Q Consensus       209 -----~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~  235 (283)
                           ++.+.++           .+||++++++.|.++..|+.
T Consensus       157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~  199 (230)
T TIGR01184       157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQI  199 (230)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCc
Confidence                 1112221           67999999999999876644

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.87  E-value=8.9e-22  Score=167.24  Aligned_cols=140  Identities=17%  Similarity=0.095  Sum_probs=101.4

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC--CHHHHHHhccccCCchHH-----
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERIR-----  139 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~~-----  139 (283)
                      ...+++++|... |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...  ....+++.++|++|++..     
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            457889999854 9999999999999999999999999987 9999988877421  223456679999998621     


Q ss_pred             ----HHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          140 ----AVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       140 ----~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                          .+.++.. ......+....+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus        85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  161 (190)
T TIGR01166        85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA  161 (190)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence                1111100 0011111122445667777766666777777 999999999999998 58888888 99998754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.87  E-value=8.6e-22  Score=175.26  Aligned_cols=170  Identities=16%  Similarity=0.083  Sum_probs=120.4

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      ..+...++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++     ..+++.+
T Consensus        11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~-----~~~~~~i   83 (257)
T PRK11247         11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL-----AEAREDT   83 (257)
T ss_pred             CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH-----HHhhCce
Confidence            34555666666643  35788999985 59999999999999999999999999987 9998765543     2345679


Q ss_pred             cccCCchHH--------HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          131 GALPEERIR--------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       131 g~v~q~~~~--------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      +|++|++..        .+.++..  .   .....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++|
T Consensus        84 ~~v~q~~~l~~~~tv~enl~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD  158 (257)
T PRK11247         84 RLMFQDARLLPWKKVIDNVGLGLK--G---QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD  158 (257)
T ss_pred             EEEecCccCCCCCcHHHHHHhccc--c---hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999997531        1111110  0   0112345567777766656666666 999999999999998 58888888


Q ss_pred             -CCCCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCC
Q 023354          201 -VSGGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       201 -pt~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~  234 (283)
                       |+++.|...             +.+.+           ..+||++++++.|.+...++
T Consensus       159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~  217 (257)
T PRK11247        159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT  217 (257)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence             999875321             11222           15799999999999987553

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.87  E-value=7.4e-22  Score=193.19  Aligned_cols=177  Identities=15%  Similarity=0.077  Sum_probs=129.4

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+.+.+++|.|+. ..+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.+
T Consensus       321 ~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  399 (547)
T PRK10522        321 QTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF  399 (547)
T ss_pred             ceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence            45788899999874 346799999985 59999999999999999999999999987 9999999999888888889999


Q ss_pred             cccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCC---cc---cCCchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          131 GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADL---LL---CESGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       131 g~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~---~i---~eSgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                      +|++|++..+..+-......  ...+.+.+.++.+......+.   .+   .-||||+||+++||+++ +|.++++| ||
T Consensus       400 ~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t  477 (547)
T PRK10522        400 SAVFTDFHLFDQLLGPEGKP--ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA  477 (547)
T ss_pred             EEEecChhHHHHhhccccCc--hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            99999986554433222111  111223345555543322111   11   12999999999999998 57777777 99


Q ss_pred             CCCCchhh-------------cCCc----------ccccCEEEEEcCCccccc
Q 023354          203 GGDKIPRK-------------GGPG----------ITQADLLVINKTDLASAI  232 (283)
Q Consensus       203 ~g~~l~~~-------------~~~~----------i~~ad~ivi~K~g~i~~~  232 (283)
                      ++.|...+             .+.+          +..||+|++++.|++.+.
T Consensus       478 s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~  530 (547)
T PRK10522        478 ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL  530 (547)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence            98653211             1122          267999999999998875

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.87  E-value=6.1e-22  Score=177.15  Aligned_cols=184  Identities=15%  Similarity=0.091  Sum_probs=126.3

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCC--CCHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFT--KEDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~--~~~~  124 (283)
                      .+...++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++..  ....
T Consensus        19 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~   96 (267)
T PRK14235         19 KMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV   96 (267)
T ss_pred             eEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence            4666667766643  35789999985 5999999999999999999999999874     5 999999888753  2344


Q ss_pred             HHHHhccccCCchH-------HHHHhCCCCCC---ChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHH
Q 023354          125 EFLMRNGALPEERI-------RAVETGGCPHA---AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       125 ~~~~~ig~v~q~~~-------~~i~~~g~~~~---~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~  189 (283)
                      .+++.++|++|++.       +.+.++.....   ...+....+.+.++.++...    ..+..+.+ |+||+||++||+
T Consensus        97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar  176 (267)
T PRK14235         97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIAR  176 (267)
T ss_pred             HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence            56678999999753       11111110000   01111223445566665532    23445555 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +++ +|.++++| |+++.|....           ...++           .+||++++++.|++...|+..+.+
T Consensus       177 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14235        177 AIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF  250 (267)
T ss_pred             HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            998 58888888 9998764211           11121           678999999999999888766554

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=6e-22  Score=177.19  Aligned_cols=184  Identities=10%  Similarity=0.017  Sum_probs=123.2

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~  124 (283)
                      .+...+..+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|++.     |+ |+|.+.+.++...  ...
T Consensus        21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   98 (268)
T PRK14248         21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV   98 (268)
T ss_pred             eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence            4566667766643  45788999984 599999999999999999999999864     45 9999988877532  223


Q ss_pred             HHHHhccccCCchHH-------HHHhCCCCCCC-hHHH-HHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHH
Q 023354          125 EFLMRNGALPEERIR-------AVETGGCPHAA-IRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       125 ~~~~~ig~v~q~~~~-------~i~~~g~~~~~-~~~~-~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                      .+++.++|++|++..       .+.++...... .... ...+.+.+..+...    ...+..+.+ |+||+||+.||++
T Consensus        99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lara  178 (268)
T PRK14248         99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIART  178 (268)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHH
Confidence            456679999998531       11111000000 0111 11233445554432    223455555 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ++ +|.++++| |+++.|....           ...+           ..+||++++++.|.+.+.|+..+.+
T Consensus       179 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  251 (268)
T PRK14248        179 LAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF  251 (268)
T ss_pred             HhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            98 58888888 9998653211           0112           1679999999999999888766554

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.87  E-value=8.6e-22  Score=176.36  Aligned_cols=185  Identities=12%  Similarity=0.077  Sum_probs=122.4

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC--CCHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~--~~~~  124 (283)
                      .+...++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++     |+ |+|.+.+.++..  ....
T Consensus        13 ~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~   90 (269)
T PRK14259         13 IISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV   90 (269)
T ss_pred             eEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence            3555566655543  34789999985 599999999999999999999999986     45 999998887642  2345


Q ss_pred             HHHHhccccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHhc
Q 023354          125 EFLMRNGALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA  192 (283)
Q Consensus       125 ~~~~~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al~  192 (283)
                      .+++.++|++|++..       .+.++.............+.+.++.+..    ....+..+.+ |+||+||++||++++
T Consensus        91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~  170 (269)
T PRK14259         91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA  170 (269)
T ss_pred             HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            566789999998531       1111111000011111223344555433    2234555555 999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchh---------h--cCCc-----------ccccCEEEEEcC-----------CcccccCChHH
Q 023354          193 -DYIIYIID-VSGGDKIPR---------K--GGPG-----------ITQADLLVINKT-----------DLASAIGADLA  237 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~---------~--~~~~-----------i~~ad~ivi~K~-----------g~i~~~g~~~e  237 (283)
                       +|.++++| |+++.|...         +  ...+           ..+||++++++.           |++++.|++.+
T Consensus       171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~  250 (269)
T PRK14259        171 IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKK  250 (269)
T ss_pred             cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHH
Confidence             58888888 999865321         0  1112           168999999985           55677777766


Q ss_pred             HHh
Q 023354          238 VME  240 (283)
Q Consensus       238 ~~~  240 (283)
                      ++.
T Consensus       251 ~~~  253 (269)
T PRK14259        251 IFN  253 (269)
T ss_pred             HHh
Confidence            653

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.87  E-value=1.7e-21  Score=174.32  Aligned_cols=171  Identities=13%  Similarity=0.056  Sum_probs=120.4

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccccCCchHHH---
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGALPEERIRA---  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~v~q~~~~~---  140 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+   ..+++.++|++|++...   
T Consensus        25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~  104 (268)
T PRK10419         25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP  104 (268)
T ss_pred             eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence            45789999984 59999999999999999999999999887 999999887765443   23567899999986210   


Q ss_pred             -------HHhCC--CCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          141 -------VETGG--CPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       141 -------i~~~g--~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                             +....  .......+....+.+.++.++.. ...+..+.+ |+||+||++||++++ +|.++++| |+++.|.
T Consensus       105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~  184 (268)
T PRK10419        105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL  184 (268)
T ss_pred             CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence                   10000  00000111122345566666554 344555555 999999999999998 58888888 9998753


Q ss_pred             h-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          208 P-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       208 ~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .             .+.+.++           .+||++++++.|++.+.|+..+.+
T Consensus       185 ~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  240 (268)
T PRK10419        185 VLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL  240 (268)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence            2             1112221           579999999999998888776643

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.87  E-value=1.4e-21  Score=170.48  Aligned_cols=151  Identities=17%  Similarity=0.089  Sum_probs=107.7

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .+...++...|.  ....+.+++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++
T Consensus         7 ~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   84 (225)
T PRK10247          7 LLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS   84 (225)
T ss_pred             eEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence            344555555553  2357899999854 9999999999999999999999999887 99999988876655556677899


Q ss_pred             ccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          132 ALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       132 ~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      |++|++..       .+.+....... ......+.+.++.+... ...+..+.+ |+||+||+.||++++ +|.++++| 
T Consensus        85 ~~~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (225)
T PRK10247         85 YCAQTPTLFGDTVYDNLIFPWQIRNQ-QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE  163 (225)
T ss_pred             EEecccccccccHHHHHHhHHhhcCC-ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99998531       11111000000 11112344567777664 345666666 999999999999998 58888888 


Q ss_pred             CCCCCCc
Q 023354          201 VSGGDKI  207 (283)
Q Consensus       201 pt~g~~l  207 (283)
                      |+++.|.
T Consensus       164 Pt~~LD~  170 (225)
T PRK10247        164 ITSALDE  170 (225)
T ss_pred             CcccCCH
Confidence            9998754

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.86  E-value=1.7e-21  Score=169.79  Aligned_cols=157  Identities=15%  Similarity=0.126  Sum_probs=109.5

Q ss_pred             CCCCccccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH
Q 023354           50 GLAPHSHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF  126 (283)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~  126 (283)
                      ...+.+...+....|+... ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+
T Consensus         7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~   86 (226)
T cd03248           7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL   86 (226)
T ss_pred             CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence            3456667777777776542 35889999985 59999999999999999999999999987 999998877665545556


Q ss_pred             HHhccccCCchHHH-------HHhCCCCCCChHHHHH-----HHHHHHHHc--cccccCCCcccC-CchHHHHHHHHHHh
Q 023354          127 LMRNGALPEERIRA-------VETGGCPHAAIREDIS-----INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       127 ~~~ig~v~q~~~~~-------i~~~g~~~~~~~~~~~-----~~~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      ++.++|++|++..+       +.++ .......+...     ...+.++.+  +.....+..+.+ |+||+||+.+|+++
T Consensus        87 ~~~i~~~~q~~~l~~~tv~~nl~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral  165 (226)
T cd03248          87 HSKVSLVGQEPVLFARSLQDNIAYG-LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL  165 (226)
T ss_pred             HhhEEEEecccHHHhhhHHHHhccc-cCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence            67899999986422       1111 11111111000     122345555  333344555555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCc
Q 023354          192 A-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l  207 (283)
                      + +|.++++| |+++.|.
T Consensus       166 ~~~p~llllDEPt~~LD~  183 (226)
T cd03248         166 IRNPQVLILDEATSALDA  183 (226)
T ss_pred             hcCCCEEEEeCCcccCCH
Confidence            8 48888888 9998764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.86  E-value=1.1e-21  Score=172.75  Aligned_cols=167  Identities=13%  Similarity=0.055  Sum_probs=115.3

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHHH-HhccccCCchHH-----
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGALPEERIR-----  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v~q~~~~-----  139 (283)
                      ..+.+++|.. +|++++|+||||||||||+++|+|++  +|+ |+|.+.+.++......... ..++|++|++..     
T Consensus        14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   93 (243)
T TIGR01978        14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVS   93 (243)
T ss_pred             EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCcC
Confidence            4788899985 49999999999999999999999995  576 9999999887665544433 348999998531     


Q ss_pred             ---HHHhC-----CCC-C--CChHHHHHHHHHHHHHcccc-ccCCCccc-C-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          140 ---AVETG-----GCP-H--AAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       140 ---~i~~~-----g~~-~--~~~~~~~~~~~~~l~~l~~~-~~~d~~i~-e-SgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                         .+.+.     ... .  ....+....+.+.++.++.. ...+..+. + |+||+||+.||++++ +|.++++| |++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  173 (243)
T TIGR01978        94 NLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS  173 (243)
T ss_pred             HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence               11111     000 0  00111122345567777665 34455554 3 999999999999998 58888888 999


Q ss_pred             CCCchh------------hcCCcc-----------cc-cCEEEEEcCCcccccCChH
Q 023354          204 GDKIPR------------KGGPGI-----------TQ-ADLLVINKTDLASAIGADL  236 (283)
Q Consensus       204 g~~l~~------------~~~~~i-----------~~-ad~ivi~K~g~i~~~g~~~  236 (283)
                      +.|...            +.+.++           .. ||++++++.|++...|+..
T Consensus       174 ~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~  230 (243)
T TIGR01978       174 GLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE  230 (243)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence            865321            111221           45 7999999999998877654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.2e-21  Score=173.58  Aligned_cols=184  Identities=13%  Similarity=0.087  Sum_probs=124.3

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc--C---C-CcEEEEeecCCCC--CHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D---K-YSLAAVTNDIFTK--EDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~--~---~-g~i~i~~~d~~~~--~~~  124 (283)
                      .+...+..+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++  |   + |+|.+.+.++...  ...
T Consensus         4 ~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~   81 (252)
T PRK14256          4 KVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV   81 (252)
T ss_pred             EEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence            3455566666642  35789999985 599999999999999999999999985  3   4 9999998877532  234


Q ss_pred             HHHHhccccCCchH--------HHHHhCCCCCC--ChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHH
Q 023354          125 EFLMRNGALPEERI--------RAVETGGCPHA--AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       125 ~~~~~ig~v~q~~~--------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~  189 (283)
                      .+++.++|+||++.        +.+.++.....  ...+....+.+.++.++...    ..+..+.+ |+||+||+++|+
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar  161 (252)
T PRK14256         82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR  161 (252)
T ss_pred             HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence            55678999999853        11111110111  11111123445565655422    23444555 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +++ +|.++++| |+++.|....           ...+           ..+||++++++.|++...|+..+.+
T Consensus       162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14256        162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF  235 (252)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            998 58888888 9998754211           0112           1679999999999999888776654

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=2.4e-21  Score=159.76  Aligned_cols=171  Identities=16%  Similarity=0.147  Sum_probs=126.8

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----------H---HHHHHhccccC
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----------D---GEFLMRNGALP  134 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----------~---~~~~~~ig~v~  134 (283)
                      ..|..+++..+ |.+|.|||.+||||||+|++|.=+..|+ |.|.+.+.++....          .   ..+|.+.|+||
T Consensus        20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF   99 (256)
T COG4598          20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF   99 (256)
T ss_pred             hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence            36778888755 9999999999999999999999999998 99999888765221          1   23466799999


Q ss_pred             CchHHH---------HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          135 EERIRA---------VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       135 q~~~~~---------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                      |....+         ++.+.... ....+..+.....|.++++.+..+.+... ||||+||++|||+|+ +|.++|+| |
T Consensus       100 Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEP  179 (256)
T COG4598         100 QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP  179 (256)
T ss_pred             hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCC
Confidence            986421         11111000 11233445566778888888777766666 999999999999998 68888888 9


Q ss_pred             CCCCC-------------chhhcCCcc----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          202 SGGDK-------------IPRKGGPGI----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       202 t~g~~-------------l~~~~~~~i----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |+.+|             +.++...++          ..+..|+++..|++.++|++.++|.
T Consensus       180 TSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~  241 (256)
T COG4598         180 TSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFG  241 (256)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhc
Confidence            99754             223332221          4577999999999999999998886

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.86  E-value=2e-21  Score=170.29  Aligned_cols=168  Identities=15%  Similarity=0.121  Sum_probs=118.5

Q ss_pred             CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH-------
Q 023354           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-------  140 (283)
Q Consensus        70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~-------  140 (283)
                      ..+++++|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++..+       
T Consensus        14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~~   91 (232)
T cd03300          14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVFE   91 (232)
T ss_pred             eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHHH
Confidence            578889998 459999999999999999999999999987 999998887764333  246799999875311       


Q ss_pred             -HHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------
Q 023354          141 -VETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------  208 (283)
Q Consensus       141 -i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------  208 (283)
                       +.++..... ........+...++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..       
T Consensus        92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~  171 (232)
T cd03300          92 NIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQL  171 (232)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence             111100000 0111112334566666666656666666 999999999999998 58888887 99986532       


Q ss_pred             ------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          209 ------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       209 ------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                            .+.+.++           .+||++++++.|++.+.++..+.+
T Consensus       172 ~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~  219 (232)
T cd03300         172 ELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY  219 (232)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence                  1112221           579999999999998877655443

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=187.53  Aligned_cols=170  Identities=14%  Similarity=0.084  Sum_probs=122.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhccccCCchH-------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI-------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~-------  138 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.++|++|++.       
T Consensus        11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   90 (491)
T PRK10982         11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV   90 (491)
T ss_pred             EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence            35788999984 59999999999999999999999999987 9999999887654433 33457999999753       


Q ss_pred             -HHHHhCCCCCC----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-
Q 023354          139 -RAVETGGCPHA----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-  209 (283)
Q Consensus       139 -~~i~~~g~~~~----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-  209 (283)
                       +.+.++.....    ...+....+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|... 
T Consensus        91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~  170 (491)
T PRK10982         91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV  170 (491)
T ss_pred             HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence             12222211110    1111223455677777766666776766 999999999999998 58888888 999976321 


Q ss_pred             -----------hcCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354          210 -----------KGGPG-----------ITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       210 -----------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                                 +.+.+           ..+||++++++.|++...++..+.
T Consensus       171 ~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        171 NHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence                       11222           167999999999999887765544

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3e-21  Score=187.26  Aligned_cols=185  Identities=16%  Similarity=0.162  Sum_probs=129.0

Q ss_pred             ccccccCCCCCCC-CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc-CC-CcEEEEeecCCCCCHH-HHHH
Q 023354           54 HSHEPIYSPGYFS-RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKEDG-EFLM  128 (283)
Q Consensus        54 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~-~~-g~i~i~~~d~~~~~~~-~~~~  128 (283)
                      .+...++...|.. ....++++++|..+ |++++|+|+||||||||+++|+|+++ |+ |+|.+.+.++....+. .+++
T Consensus       259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~  338 (506)
T PRK13549        259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ  338 (506)
T ss_pred             eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence            3556666766642 23457889999855 99999999999999999999999998 45 9999988877543332 3455


Q ss_pred             hccccCCchH-----------HHHHhCC---CCC-C--ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHH
Q 023354          129 RNGALPEERI-----------RAVETGG---CPH-A--AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       129 ~ig~v~q~~~-----------~~i~~~g---~~~-~--~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~  189 (283)
                      .++|++|++.           +.+.++.   ... .  ...+....+.+.++.+... ...+..+.+ ||||+||+.||+
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~  418 (506)
T PRK13549        339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK  418 (506)
T ss_pred             CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence            6999999841           1121111   100 0  1111223456678888775 356777777 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchhh------------cCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354          190 ELA-DYIIYIID-VSGGDKIPRK------------GGPG-----------ITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      +++ +|.++|+| |+++.|....            .+.+           ..+||++++++.|++...++..+.
T Consensus       419 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        419 CLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence            998 58888888 9999764311            1222           167999999999999876655443

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.86  E-value=1.6e-21  Score=190.17  Aligned_cols=186  Identities=16%  Similarity=0.133  Sum_probs=129.5

Q ss_pred             ccccccCCCCCCCC---------CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCH
Q 023354           54 HSHEPIYSPGYFSR---------RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED  123 (283)
Q Consensus        54 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~  123 (283)
                      .+...+++..|...         ....+++++|..+ |++++|+||||||||||+++|+|+++.+|+|.+.+.++...+.
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~  354 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR  354 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence            35566666666421         2357899999854 9999999999999999999999998645999999887765433


Q ss_pred             H---HHHHhccccCCchH----------HHHHhCCCCC---CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHH
Q 023354          124 G---EFLMRNGALPEERI----------RAVETGGCPH---AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAA  185 (283)
Q Consensus       124 ~---~~~~~ig~v~q~~~----------~~i~~~g~~~---~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~  185 (283)
                      .   .+++.++|++|++.          +.+.++....   ....+....+.+.|+.+++. ...+..+.+ ||||+||+
T Consensus       355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  434 (529)
T PRK15134        355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI  434 (529)
T ss_pred             hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence            2   23567999999852          1111111000   01111123455677777765 345666666 99999999


Q ss_pred             HHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          186 NFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       186 ~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .||++++ +|.++|+| |+++.|..             .+.+.++           .+||++++++.|++.+.|+..+++
T Consensus       435 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  514 (529)
T PRK15134        435 AIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVF  514 (529)
T ss_pred             HHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence            9999998 58888888 99997532             1112221           679999999999998888776654

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.86  E-value=2.3e-21  Score=166.94  Aligned_cols=171  Identities=17%  Similarity=0.147  Sum_probs=115.1

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .....+..+.|.....+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++......++++.++
T Consensus         6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   85 (207)
T cd03369           6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT   85 (207)
T ss_pred             eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence            34445555555543346889999985 59999999999999999999999999987 99999998876655556677899


Q ss_pred             ccCCchHHHH----HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          132 ALPEERIRAV----ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       132 ~v~q~~~~~i----~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                      |++|++..+.    +.-........   ..+.+.++       .+..+.+ |+||+||+++||+++ +|.++++| |+++
T Consensus        86 ~v~q~~~~~~~tv~~~l~~~~~~~~---~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  155 (207)
T cd03369          86 IIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS  155 (207)
T ss_pred             EEecCCcccCccHHHHhcccCCCCH---HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence            9999863110    00000000011   11122222       2333444 999999999999998 58888877 9998


Q ss_pred             CCchhh-----------cCCc----------ccccCEEEEEcCCcccccCC
Q 023354          205 DKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       205 ~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~  234 (283)
                      .|....           .+.+          +..||++++++.|++...|+
T Consensus       156 LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         156 IDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH  206 (207)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence            654211           0111          13478888888888766543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.86  E-value=1.5e-21  Score=173.32  Aligned_cols=177  Identities=14%  Similarity=0.022  Sum_probs=120.7

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----C-CcEEEEeecCCCCCHHHHHHh
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----K-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      ...++.+.|   ..+.+.+++|.. +|++++|+|+||||||||+++|+|+++|    + |+|.+.+.++...  ...++.
T Consensus         6 ~~~~l~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~~   80 (254)
T PRK10418          6 ELRNIALQA---AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGRK   80 (254)
T ss_pred             EEeCeEEEe---ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccce
Confidence            344555555   235788999985 5999999999999999999999999988    7 9999988776421  112356


Q ss_pred             ccccCCchHH-H---------HHhC-CCCCCChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIR-A---------VETG-GCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~-~---------i~~~-g~~~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      ++|++|++.. +         +... ......  .....+.+.++.++...   ..+..+.+ |+||+||+.||++++ +
T Consensus        81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~  158 (254)
T PRK10418         81 IATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCE  158 (254)
T ss_pred             EEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcC
Confidence            9999998521 0         0000 000000  11123455667766543   23555555 999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          194 YIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      |.++++| |+++.|..             .+.+.++           .+||++++++.|++...++..+.+
T Consensus       159 p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  229 (254)
T PRK10418        159 APFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF  229 (254)
T ss_pred             CCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            8888888 99986532             1112221           579999999999999887765543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.86  E-value=3e-21  Score=166.98  Aligned_cols=157  Identities=17%  Similarity=0.133  Sum_probs=109.2

Q ss_pred             ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC----HHHHHHhccccCCchHH--------
Q 023354           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE----DGEFLMRNGALPEERIR--------  139 (283)
Q Consensus        74 ~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~----~~~~~~~ig~v~q~~~~--------  139 (283)
                      +++|. .+ ++++|+||||||||||+++|+|+++|+ |+|.+.+.++....    ....++.++|++|++..        
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~   94 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE   94 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence            66776 56 999999999999999999999999987 99999887764321    22345679999998531        


Q ss_pred             HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------
Q 023354          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------  209 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------  209 (283)
                      .+.++.... ........+.+.++.++.....+..+.+ |+||+||+.||++++ +|.++++| |+++.|...       
T Consensus        95 ~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~  173 (214)
T cd03297          95 NLAFGLKRK-RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE  173 (214)
T ss_pred             HHHHHHhhC-CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence            111111000 1111222445677777666556666666 999999999999998 58888888 999875321       


Q ss_pred             ------hcCCcc-----------cccCEEEEEcCCccccc
Q 023354          210 ------KGGPGI-----------TQADLLVINKTDLASAI  232 (283)
Q Consensus       210 ------~~~~~i-----------~~ad~ivi~K~g~i~~~  232 (283)
                            +.+.++           .+||++++++.|++.+.
T Consensus       174 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  213 (214)
T cd03297         174 LKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI  213 (214)
T ss_pred             HHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence                  112221           56889998888887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.86  E-value=2e-21  Score=168.90  Aligned_cols=139  Identities=17%  Similarity=0.160  Sum_probs=102.2

Q ss_pred             CCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HHHHhccccCCchHHH---
Q 023354           69 APPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EFLMRNGALPEERIRA---  140 (283)
Q Consensus        69 ~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~~~~ig~v~q~~~~~---  140 (283)
                      ...+++++|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...+..   ..++.++|++|++..+   
T Consensus        18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (220)
T TIGR02982        18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL   97 (220)
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence            3578899998 459999999999999999999999999987 9999988877654432   3567899999986421   


Q ss_pred             -----HHhCCCCC--CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          141 -----VETGGCPH--AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       141 -----i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                           +.+.....  ....+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|.
T Consensus        98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~  174 (220)
T TIGR02982        98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS  174 (220)
T ss_pred             CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence                 11111100  11122223456677777776666666666 999999999999998 58888887 9998764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.86  E-value=2.5e-21  Score=168.94  Aligned_cols=173  Identities=14%  Similarity=0.039  Sum_probs=118.0

Q ss_pred             cccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc---CC-CcEEEEeecCCCCCHHHHHHh
Q 023354           57 EPIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        57 ~~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~---~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      +.++++.|+...  ...+++++|.. +|++++|+||||||||||+++|+|+++   |+ |+|.+.+.++.   ...+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~~~   82 (226)
T cd03234           6 WWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKC   82 (226)
T ss_pred             eecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhccc
Confidence            456667776663  66889999984 599999999999999999999999998   76 99999887664   2345677


Q ss_pred             ccccCCchH--------HHHHhCCC---CCCChHHHH-HHHHH-HHHHccccccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354          130 NGALPEERI--------RAVETGGC---PHAAIREDI-SINLG-PLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       130 ig~v~q~~~--------~~i~~~g~---~~~~~~~~~-~~~~~-~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      ++|++|++.        +.+.++..   +........ ....+ .++.+......+..+.+ |+||+||+++|++++ +|
T Consensus        83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  162 (226)
T cd03234          83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP  162 (226)
T ss_pred             EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence            999998753        11221110   000011111 12222 56666555545555666 999999999999998 58


Q ss_pred             cEEEEe-CCCCCCchhh------------cCCc------------ccccCEEEEEcCCccccc
Q 023354          195 IIYIID-VSGGDKIPRK------------GGPG------------ITQADLLVINKTDLASAI  232 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~~------------~~~~------------i~~ad~ivi~K~g~i~~~  232 (283)
                      .++++| |+++.|...+            .+.+            ..+||++++++.|++.+.
T Consensus       163 ~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~  225 (226)
T cd03234         163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS  225 (226)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence            888888 9998653210            0111            246888888888887653

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.86  E-value=2.4e-21  Score=169.87  Aligned_cols=168  Identities=19%  Similarity=0.255  Sum_probs=112.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------  140 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------  140 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.++|++|++..+      
T Consensus        14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~   93 (236)
T cd03253          14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY   93 (236)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHH
Confidence            34788889985 59999999999999999999999999987 99999888776655556677899999986421      


Q ss_pred             -HHhCCCCCCChHHHHHHHH------HHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          141 -VETGGCPHAAIREDISINL------GPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       141 -i~~~g~~~~~~~~~~~~~~------~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                       +.++. .... ........      +.+..+  ......+..+.. |+||+||+++|++++ +|.++++| |+++.|..
T Consensus        94 nl~~~~-~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~  171 (236)
T cd03253          94 NIRYGR-PDAT-DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTH  171 (236)
T ss_pred             HHhhcC-CCCC-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence             11111 1111 11111101      111111  111112223334 999999999999999 48888888 99986532


Q ss_pred             hh-----------cCCc----------ccccCEEEEEcCCcccccCChHHH
Q 023354          209 RK-----------GGPG----------ITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       209 ~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      ..           .+.+          +..||++++++.|++...++..+.
T Consensus       172 ~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~  222 (236)
T cd03253         172 TEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEEL  222 (236)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence            11           0222          145999999999999887665443

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.3e-21  Score=173.95  Aligned_cols=183  Identities=13%  Similarity=0.045  Sum_probs=120.8

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCHHHH
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEF  126 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~~~~  126 (283)
                      ...+++..|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|      +|+|.+.+.++..  .....+
T Consensus         6 ~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~   83 (258)
T PRK14241          6 DVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV   83 (258)
T ss_pred             EEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence            33444445533  35788999985 5999999999999999999999999863      4999999887742  234456


Q ss_pred             HHhccccCCchH--------HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354          127 LMRNGALPEERI--------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       127 ~~~ig~v~q~~~--------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      ++.++|++|++.        +.+.++.....  ........+.+.++.++..    ...+..+.+ |+||+||++||+++
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (258)
T PRK14241         84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI  163 (258)
T ss_pred             hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            678999999752        11111100000  1111112333455555432    234555555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEc------CCcccccCChHHHHh
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINK------TDLASAIGADLAVME  240 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K------~g~i~~~g~~~e~~~  240 (283)
                      + +|.++++| |+++.|....           ...+           .++||++++++      .|++.+.|+..+.+.
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~  242 (258)
T PRK14241        164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFS  242 (258)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHh
Confidence            8 58888888 9998753210           0112           16799998886      788888877766543

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.86  E-value=2.1e-21  Score=190.28  Aligned_cols=179  Identities=11%  Similarity=-0.011  Sum_probs=130.4

Q ss_pred             CCccccccCCCCCCCC---CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH
Q 023354           52 APHSHEPIYSPGYFSR---RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF  126 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~  126 (283)
                      .+.+.+.++++.|++.   ..+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++
T Consensus       335 ~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~  414 (555)
T TIGR01194       335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY  414 (555)
T ss_pred             CceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence            3457888999999764   235789999985 59999999999999999999999999998 999999999988888888


Q ss_pred             HHhccccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHcccc-------ccCCCcccCCchHHHHHHHHHHhc-CCcEEE
Q 023354          127 LMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCESGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       127 ~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-------~~~d~~i~eSgGq~q~~~ia~al~-~~~l~l  198 (283)
                      ++.+++++|++..+..+-.... ......+.+.+.++.+...       .+++....-||||+||+++||+++ +|.+++
T Consensus       415 ~~~i~~v~q~~~lf~~ti~~n~-~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili  493 (555)
T TIGR01194       415 RDLFSAIFADFHLFDDLIGPDE-GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL  493 (555)
T ss_pred             HhhCcEEccChhhhhhhhhccc-ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            9999999999865544332211 1111112333455554432       234443334999999999999998 577777


Q ss_pred             Ee-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccc
Q 023354          199 ID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASA  231 (283)
Q Consensus       199 lD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~  231 (283)
                      +| ||++.|...             ..+.+          +..||+|++++.|++.+
T Consensus       494 lDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~  550 (555)
T TIGR01194       494 FDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK  550 (555)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence            77 999854211             01122          26799999999998875

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.86  E-value=2.3e-21  Score=189.05  Aligned_cols=185  Identities=11%  Similarity=0.066  Sum_probs=127.7

Q ss_pred             cccccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCCCHHH
Q 023354           55 SHEPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKEDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~~~~~  125 (283)
                      +...++++.|...  ..+++++++|.. +|++++|+||||||||||+++|+|+++|     + |+|.+.+.++......+
T Consensus         6 l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   85 (529)
T PRK15134          6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQT   85 (529)
T ss_pred             EEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHH
Confidence            3445555556432  246889999985 5999999999999999999999999985     4 99999988876544332


Q ss_pred             ---HH-HhccccCCchHH----------HHHhC--CCCCCChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHH
Q 023354          126 ---FL-MRNGALPEERIR----------AVETG--GCPHAAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAA  185 (283)
Q Consensus       126 ---~~-~~ig~v~q~~~~----------~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~  185 (283)
                         .+ +.+||++|++..          .+...  ........+....+.+.++.+++..   ..+..+.+ ||||+||+
T Consensus        86 ~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv  165 (529)
T PRK15134         86 LRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRV  165 (529)
T ss_pred             HHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHH
Confidence               22 469999998521          01100  0000111122234566778777653   24666666 99999999


Q ss_pred             HHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          186 NFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       186 ~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +||++++ +|.++|+| |+++.|..             .+.+.++           .+||+|++++.|++.+.|++.+.+
T Consensus       166 ~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~  245 (529)
T PRK15134        166 MIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLF  245 (529)
T ss_pred             HHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            9999998 58888888 99986532             1112221           579999999999998877766553

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.86  E-value=2.2e-21  Score=170.39  Aligned_cols=166  Identities=18%  Similarity=0.136  Sum_probs=119.1

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH--------
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA--------  140 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~--------  140 (283)
                      .+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++..+        
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e~   91 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYALFPHMTVYKN   91 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCccCCCccHHHH
Confidence            688899984 59999999999999999999999999998 999999988765433  246799999875311        


Q ss_pred             HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------
Q 023354          141 VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------  209 (283)
Q Consensus       141 i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------  209 (283)
                      +.++.... ....+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |+++.|...       
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~  171 (235)
T cd03299          92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREE  171 (235)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHH
Confidence            11111000 01111222345567777766666666666 999999999999998 58888888 999865321       


Q ss_pred             ------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          210 ------KGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       210 ------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                            +.+.++           .+||++++++.|++.+.++..+.
T Consensus       172 l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  217 (235)
T cd03299         172 LKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV  217 (235)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence                  112221           57999999999999887765544

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2e-21  Score=172.08  Aligned_cols=184  Identities=14%  Similarity=0.044  Sum_probs=123.9

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCC--CHHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~--~~~~  125 (283)
                      ....+....|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++...  ....
T Consensus         5 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (251)
T PRK14270          5 MESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE   82 (251)
T ss_pred             EEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence            344555555542  35788999985 5999999999999999999999999864     4 9999998887532  2335


Q ss_pred             HHHhccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +++.++|++|++.       +.+.++.....  ...+....+.+.++.++..    ...+..+.+ |+||+||+++|+++
T Consensus        83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  162 (251)
T PRK14270         83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI  162 (251)
T ss_pred             HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            5678999999863       11211110000  0111112333455555432    234455555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh---------c--CCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          192 A-DYIIYIID-VSGGDKIPRK---------G--GPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~---------~--~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      + +|.|+++| |+++.|....         .  ..+           ...||++++++.|++.+.|+..+.+.
T Consensus       163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  235 (251)
T PRK14270        163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL  235 (251)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence            8 58888887 9998764211         0  112           15799999999999998888776653

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.4e-21  Score=175.35  Aligned_cols=180  Identities=17%  Similarity=0.153  Sum_probs=122.5

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      ...++...|.. ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..   ....+.++|+
T Consensus         8 ~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v   83 (272)
T PRK15056          8 VVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYV   83 (272)
T ss_pred             EEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEe
Confidence            34455555542 235788999985 59999999999999999999999999987 999998877531   1112359999


Q ss_pred             CCchHH-------HHH---hCCCCC-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          134 PEERIR-------AVE---TGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       134 ~q~~~~-------~i~---~~g~~~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      +|++..       ...   ++....     .........+.+.++.+++....+..+.+ |+||+||+.+|++++ +|.+
T Consensus        84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l  163 (272)
T PRK15056         84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV  163 (272)
T ss_pred             ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            997521       001   111100     00011222345567777776666777777 999999999999998 5888


Q ss_pred             EEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          197 YIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       197 ~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +++| |+++.|...            +.+.+           ...||+++++ .|++...|+..+.+.
T Consensus       164 lllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~  230 (272)
T PRK15056        164 ILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT  230 (272)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence            8888 999865321            11222           1678999888 799888787766543

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.86  E-value=2.2e-21  Score=166.67  Aligned_cols=162  Identities=14%  Similarity=0.031  Sum_probs=112.7

Q ss_pred             cccccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc---CC-CcEEEEeecCCCCCHHHHH
Q 023354           55 SHEPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        55 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~---~~-g~i~i~~~d~~~~~~~~~~  127 (283)
                      .+..++.|.|+..  ....+.+++|.. +|++++|+||||||||||+++|+|+++   |+ |+|.+.+.++.... ...+
T Consensus         4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~   82 (202)
T cd03233           4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP   82 (202)
T ss_pred             EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence            3455667777754  345788999984 599999999999999999999999998   66 99999888776432 3456


Q ss_pred             HhccccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          128 MRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       128 ~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                      +.++|++|++.      .++..++.+.+....    .+    ..+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus        83 ~~i~~~~q~~~------~~~~~tv~~~l~~~~----~~----~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~  148 (202)
T cd03233          83 GEIIYVSEEDV------HFPTLTVRETLDFAL----RC----KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRG  148 (202)
T ss_pred             ceEEEEecccc------cCCCCcHHHHHhhhh----hh----ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCcc
Confidence            67999998642      122234444332110    01    03444445 999999999999998 58888888 9998


Q ss_pred             CCchh-------------hcCCc------------ccccCEEEEEcCCcccc
Q 023354          205 DKIPR-------------KGGPG------------ITQADLLVINKTDLASA  231 (283)
Q Consensus       205 ~~l~~-------------~~~~~------------i~~ad~ivi~K~g~i~~  231 (283)
                      .|...             +.+.+            .+.||++++++.|++..
T Consensus       149 LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~  200 (202)
T cd03233         149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY  200 (202)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence            65321             11111            15688888888887764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.86  E-value=2.8e-21  Score=169.78  Aligned_cols=163  Identities=17%  Similarity=0.077  Sum_probs=111.1

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc-hH-------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE-RI-------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~-~~-------  138 (283)
                      .+.+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|+ +.       
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv  112 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence            45788999985 59999999999999999999999999987 9999988765432 23455679998743 21       


Q ss_pred             -HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----
Q 023354          139 -RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----  209 (283)
Q Consensus       139 -~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----  209 (283)
                       +.+.+..... ....+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...    
T Consensus       113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l  192 (236)
T cd03267         113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI  192 (236)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence             1111111000 11111122334566666665556666666 999999999999998 58888888 999875321    


Q ss_pred             ---------hcCCc-----------ccccCEEEEEcCCccccc
Q 023354          210 ---------KGGPG-----------ITQADLLVINKTDLASAI  232 (283)
Q Consensus       210 ---------~~~~~-----------i~~ad~ivi~K~g~i~~~  232 (283)
                               +.+.+           ..+||++++++.|.+.+.
T Consensus       193 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  235 (236)
T cd03267         193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD  235 (236)
T ss_pred             HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence                     11112           156889988888887653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.86  E-value=5.8e-21  Score=164.65  Aligned_cols=177  Identities=21%  Similarity=0.136  Sum_probs=132.2

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHHHhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~~~ig  131 (283)
                      +.+.+++..|  ..+..+.++++... |+.++|+|||||||||||++++|.+.|+ |.+.+.+..++...- .+++++||
T Consensus        32 i~l~~v~v~r--~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG  109 (257)
T COG1119          32 IELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG  109 (257)
T ss_pred             EEecceEEEE--CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence            4555555443  33468899999855 9999999999999999999999999987 999999999987655 89999999


Q ss_pred             ccCCchH----------HHHHhC-----CCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          132 ALPEERI----------RAVETG-----GCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       132 ~v~q~~~----------~~i~~~-----g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      +|...-.          +.+..|     |... ....++...+...|+.++.....++++.. |-||+||+.||||++ +
T Consensus       110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~  189 (257)
T COG1119         110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD  189 (257)
T ss_pred             ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence            9864311          112222     2222 22344555667788889888899999988 999999999999998 6


Q ss_pred             CcEEEEe-CCCCCCchhhc--------------CCc-----------ccccCEEEEEcCCcccccC
Q 023354          194 YIIYIID-VSGGDKIPRKG--------------GPG-----------ITQADLLVINKTDLASAIG  233 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~~--------------~~~-----------i~~ad~ivi~K~g~i~~~g  233 (283)
                      |.++++| |++|.|+..+.              ..+           ....++++++|.|++++.|
T Consensus       190 P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g  255 (257)
T COG1119         190 PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG  255 (257)
T ss_pred             CCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence            9998888 99998764320              111           1445678888888877654

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=192.38  Aligned_cols=186  Identities=15%  Similarity=0.114  Sum_probs=127.3

Q ss_pred             ccccccCCCCCCCC--CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC----------C
Q 023354           54 HSHEPIYSPGYFSR--RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----------F  119 (283)
Q Consensus        54 ~~~~~~~~~~~~~~--~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~----------~  119 (283)
                      .+...+.+..|...  ..+++++++|.. +|++++|+|+||||||||+++|+|+++|+ |.|.+.+.++          .
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~   91 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS   91 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence            34555566666432  236889999984 59999999999999999999999999987 9988766533          1


Q ss_pred             CCCHHH---HH-HhccccCCchH----------HHHHhCCCC--CCChHHHHHHHHHHHHHccccc---cCCCcccC-Cc
Q 023354          120 TKEDGE---FL-MRNGALPEERI----------RAVETGGCP--HAAIREDISINLGPLEELSNLF---KADLLLCE-SG  179 (283)
Q Consensus       120 ~~~~~~---~~-~~ig~v~q~~~----------~~i~~~g~~--~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-Sg  179 (283)
                      ......   ++ +.+||++|++.          +.+.++...  .....+....+.+.|+.+++..   ..+..+.+ ||
T Consensus        92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg  171 (623)
T PRK10261         92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG  171 (623)
T ss_pred             cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence            122222   22 36999999751          112211100  1111222235566788887642   35666667 99


Q ss_pred             hHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccC
Q 023354          180 GDNLAANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIG  233 (283)
Q Consensus       180 Gq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g  233 (283)
                      ||+||++||++|+ +|.|+|+| ||++.|..             ++.+.+           ..+||+|++++.|++++.|
T Consensus       172 Gq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g  251 (623)
T PRK10261        172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETG  251 (623)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccC
Confidence            9999999999998 58888888 99986532             121222           1689999999999999888


Q ss_pred             ChHHHH
Q 023354          234 ADLAVM  239 (283)
Q Consensus       234 ~~~e~~  239 (283)
                      +..+.+
T Consensus       252 ~~~~~~  257 (623)
T PRK10261        252 SVEQIF  257 (623)
T ss_pred             CHHHhh
Confidence            776664

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.2e-21  Score=171.71  Aligned_cols=183  Identities=14%  Similarity=0.096  Sum_probs=121.3

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc--C----CCcEEEEeecCCC--CCHHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D----KYSLAAVTNDIFT--KEDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~--~----~g~i~i~~~d~~~--~~~~~  125 (283)
                      +...++.+.|..  .+.+++++|.. +|++++|+|+||||||||+++|+|+++  |    .|+|.+.+.++..  .....
T Consensus         4 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14240          4 ISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ   81 (250)
T ss_pred             EEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence            344555555543  35788999985 599999999999999999999999875  2    4999999887753  23345


Q ss_pred             HHHhccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +++.++|++|++.       +.+.++.....  ........+.+.++.+...    ...+..+.+ |+||+||++||+++
T Consensus        82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14240         82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL  161 (250)
T ss_pred             HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            5678999999753       11111110000  0011112333444444321    223455555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      + +|.++++| |+++.|...+           .+.+           ...||++++++.|++...++..+.+
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (250)
T PRK14240        162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF  233 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence            8 58888888 9998653211           1122           1679999999999999887765544

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2e-21  Score=175.44  Aligned_cols=184  Identities=12%  Similarity=0.028  Sum_probs=122.2

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~  124 (283)
                      .+...++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++     |+ |+|.+.+.++...  ...
T Consensus        39 ~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~  116 (285)
T PRK14254         39 VIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV  116 (285)
T ss_pred             eEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence            3555666666643  35789999985 599999999999999999999999986     45 9999988876532  334


Q ss_pred             HHHHhccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc
Q 023354          125 EFLMRNGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA  192 (283)
Q Consensus       125 ~~~~~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~  192 (283)
                      .+++.++|++|++.       +.+.+..............+.+.++.+++.    ...+..+.+ |+||+||++||++++
T Consensus       117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~  196 (285)
T PRK14254        117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA  196 (285)
T ss_pred             hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            55678999999853       111111000000011112334455555432    233455555 999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh---------c--CCc-----------ccccCEE-EEEcCCcccccCChHHHH
Q 023354          193 -DYIIYIID-VSGGDKIPRK---------G--GPG-----------ITQADLL-VINKTDLASAIGADLAVM  239 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~---------~--~~~-----------i~~ad~i-vi~K~g~i~~~g~~~e~~  239 (283)
                       +|.|+|+| |+++.|....         .  ..+           ..+||++ ++++.|++...|+..+.+
T Consensus       197 ~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~  268 (285)
T PRK14254        197 PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF  268 (285)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence             58888888 9998764211         0  111           1578986 467999998877765543

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.85  E-value=2.1e-21  Score=162.67  Aligned_cols=120  Identities=24%  Similarity=0.297  Sum_probs=92.5

Q ss_pred             CCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           60 YSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      ..+.|.......+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.++|++|++
T Consensus         6 l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   85 (173)
T cd03246           6 VSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD   85 (173)
T ss_pred             EEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC
Confidence            33444433345788899985 59999999999999999999999999987 99999988877666666777899999975


Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       138 ~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                      ..      ++ .++.+++                     -|+||+||++||++++ +|.++++| |+++.|.
T Consensus        86 ~~------~~-~tv~~~l---------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~  129 (173)
T cd03246          86 EL------FS-GSIAENI---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDV  129 (173)
T ss_pred             cc------cc-CcHHHHC---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCH
Confidence            21      11 1222211                     3999999999999998 47787777 9998764

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=2.1e-21  Score=172.65  Aligned_cols=160  Identities=18%  Similarity=0.151  Sum_probs=111.8

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....     ..++|++|++.        
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~v~q~~~~~~~~tv~   88 (255)
T PRK11248         14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPG-----AERGVVFQNEGLLPWRNVQ   88 (255)
T ss_pred             eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-----CcEEEEeCCCccCCCCcHH
Confidence            35788899985 59999999999999999999999999987 99999887764321     34799998742        


Q ss_pred             HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-----
Q 023354          139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-----  209 (283)
Q Consensus       139 ~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-----  209 (283)
                      +.+.++.... ....+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...     
T Consensus        89 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~  168 (255)
T PRK11248         89 DNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ  168 (255)
T ss_pred             HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence            1111111000 11111223455677777766555666666 999999999999998 58888888 999865321     


Q ss_pred             --------hcCCc-----------ccccCEEEEEc--CCcccccC
Q 023354          210 --------KGGPG-----------ITQADLLVINK--TDLASAIG  233 (283)
Q Consensus       210 --------~~~~~-----------i~~ad~ivi~K--~g~i~~~g  233 (283)
                              +.+.+           ..+||++++++  .|++...+
T Consensus       169 ~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~  213 (255)
T PRK11248        169 TLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERL  213 (255)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEe
Confidence                    11222           16799999998  48876643

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.8e-21  Score=186.73  Aligned_cols=177  Identities=17%  Similarity=0.133  Sum_probs=124.4

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHHHhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~~~ig  131 (283)
                      ....+.++.| .   ..+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++..... ..+++.+|
T Consensus       266 l~~~~l~~~~-~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~  341 (510)
T PRK09700        266 FEVRNVTSRD-R---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA  341 (510)
T ss_pred             EEEeCccccC-C---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence            4455555543 1   36888999855 9999999999999999999999999987 999998887754333 23456799


Q ss_pred             ccCCch----H-------HHHHhCCCC----C----C--ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHH
Q 023354          132 ALPEER----I-------RAVETGGCP----H----A--AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFS  188 (283)
Q Consensus       132 ~v~q~~----~-------~~i~~~g~~----~----~--~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia  188 (283)
                      |++|++    .       +.+.++...    .    .  ........+.+.|+.++.. ...+..+.+ ||||+||+.||
T Consensus       342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA  421 (510)
T PRK09700        342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS  421 (510)
T ss_pred             EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence            999963    1       112222110    0    0  0111223455678888775 567777777 99999999999


Q ss_pred             HHhc-CCcEEEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCCh
Q 023354          189 RELA-DYIIYIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGAD  235 (283)
Q Consensus       189 ~al~-~~~l~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~  235 (283)
                      ++++ +|.|+|+| |+++.|...            +.+.+           ..+||++++++.|++...++.
T Consensus       422 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             HHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence            9998 58888888 999976421            11222           167999999999998776544

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.85  E-value=3.2e-21  Score=187.63  Aligned_cols=185  Identities=16%  Similarity=0.093  Sum_probs=125.3

Q ss_pred             ccccccCCCCCCC---CCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEE-eec---CCCCC--
Q 023354           54 HSHEPIYSPGYFS---RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TND---IFTKE--  122 (283)
Q Consensus        54 ~~~~~~~~~~~~~---~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~-~~d---~~~~~--  122 (283)
                      .+...++...|..   .....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+. +.+   +....  
T Consensus       279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~  358 (520)
T TIGR03269       279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD  358 (520)
T ss_pred             eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence            3555666666643   2235789999985 59999999999999999999999999987 999985 432   22221  


Q ss_pred             -HHHHHHhccccCCchH--------HHHHhC-CCCCCChHHHHHHHHHHHHHccccc-----cCCCcccC-CchHHHHHH
Q 023354          123 -DGEFLMRNGALPEERI--------RAVETG-GCPHAAIREDISINLGPLEELSNLF-----KADLLLCE-SGGDNLAAN  186 (283)
Q Consensus       123 -~~~~~~~ig~v~q~~~--------~~i~~~-g~~~~~~~~~~~~~~~~l~~l~~~~-----~~d~~i~e-SgGq~q~~~  186 (283)
                       ...+++.+||++|++.        +.+.+. ++ ..........+.+.++.++...     ..+..+.+ |+||+||++
T Consensus       359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~  437 (520)
T TIGR03269       359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA  437 (520)
T ss_pred             hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence             1234557999999752        111111 11 1111111224456677776643     34666666 999999999


Q ss_pred             HHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          187 FSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       187 ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ||++++ +|.|+|+| |+++.|..             .+.+.++           .+||++++++.|++.+.|++.+++
T Consensus       438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  516 (520)
T TIGR03269       438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV  516 (520)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            999998 58888888 99997532             1112221           679999999999998877765543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.85  E-value=3.7e-21  Score=169.08  Aligned_cols=168  Identities=17%  Similarity=0.095  Sum_probs=119.2

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH-------
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-------  140 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~-------  140 (283)
                      ..+++++|... |++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++..+       
T Consensus        14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e   91 (237)
T TIGR00968        14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFVFQHYALFKHLTVRD   91 (237)
T ss_pred             eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEEecChhhccCCcHHH
Confidence            57889999854 9999999999999999999999999987 999998887754332  346799999886311       


Q ss_pred             -HHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354          141 -VETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------  209 (283)
Q Consensus       141 -i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------  209 (283)
                       +.+.... ..........+.+.++.+......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...      
T Consensus        92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~  171 (237)
T TIGR00968        92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS  171 (237)
T ss_pred             HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence             1111000 001111122345567777665555666666 999999999999998 58888888 999865321      


Q ss_pred             -------hcCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          210 -------KGGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       210 -------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                             +.+.+           ...||++++++.|++.+.++..+.+
T Consensus       172 ~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  219 (237)
T TIGR00968       172 WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY  219 (237)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence                   11222           1579999999999998877765544

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.85  E-value=1.2e-21  Score=164.98  Aligned_cols=145  Identities=15%  Similarity=0.149  Sum_probs=103.0

Q ss_pred             CCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           60 YSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      ..+.|.....+.+.+++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|++
T Consensus         6 ~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~   84 (178)
T cd03247           6 VSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRP   84 (178)
T ss_pred             EEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCC
Confidence            334444333357888999855 9999999999999999999999999987 9999988766543 445667899999975


Q ss_pred             HHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh----
Q 023354          138 IRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK----  210 (283)
Q Consensus       138 ~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~----  210 (283)
                      ..+      + .+..+++                   +.. |+||+||+.+|++++ +|.++++| |+++.|...+    
T Consensus        85 ~~~------~-~tv~~~i-------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~  138 (178)
T cd03247          85 YLF------D-TTLRNNL-------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL  138 (178)
T ss_pred             eee------c-ccHHHhh-------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence            211      1 1222111                   223 999999999999998 58888888 9998764321    


Q ss_pred             -------cCCc----------ccccCEEEEEcCCcccc
Q 023354          211 -------GGPG----------ITQADLLVINKTDLASA  231 (283)
Q Consensus       211 -------~~~~----------i~~ad~ivi~K~g~i~~  231 (283)
                             .+.+          +..||++++++.|.+.+
T Consensus       139 ~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~  176 (178)
T cd03247         139 SLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM  176 (178)
T ss_pred             HHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence                   0111          14577888887777654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=2e-21  Score=167.03  Aligned_cols=167  Identities=21%  Similarity=0.171  Sum_probs=126.4

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (283)
                      -++++++|..+ |+++|++|+|||||||++++|+|++.|+ |+|.+.+.++.+    ....+|||+|.+.-        +
T Consensus        16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGyLPEERGLy~k~tv~d   91 (300)
T COG4152          16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLYPKMTVED   91 (300)
T ss_pred             eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcccChhhhccCccCcHHH
Confidence            47889999855 9999999999999999999999999997 999999988764    44578999998752        1


Q ss_pred             HHH-hCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchh------
Q 023354          140 AVE-TGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPR------  209 (283)
Q Consensus       140 ~i~-~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~------  209 (283)
                      .+. ++........+.......+|+.+.........+.+ |.|.+|++.+..++++ |-++++| |.+|+|.-.      
T Consensus        92 ql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~  171 (300)
T COG4152          92 QLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD  171 (300)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHH
Confidence            111 12111111222223456688888887777777777 9999999999999997 8888888 999976321      


Q ss_pred             ------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          210 ------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       210 ------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                            ..+.++           +.||++++++.|..+..|+...+..
T Consensus       172 ~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~  219 (300)
T COG4152         172 AIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR  219 (300)
T ss_pred             HHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence                  112222           7899999999999999898766544

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.8e-21  Score=171.98  Aligned_cols=185  Identities=11%  Similarity=0.002  Sum_probs=122.3

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCC--CHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTK--EDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~--~~~  124 (283)
                      .+...++...|..  ...+++++|.. +|++++|+|+||||||||+++|+|++++      .|+|.+.+.++...  ...
T Consensus        20 ~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~   97 (274)
T PRK14265         20 VFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV   97 (274)
T ss_pred             eEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence            4555666666543  35788999985 5999999999999999999999999752      49999988877532  223


Q ss_pred             HHHHhccccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHhc
Q 023354          125 EFLMRNGALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA  192 (283)
Q Consensus       125 ~~~~~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al~  192 (283)
                      .+++.++|++|++..       .+.++.............+.+.++.+..    ....+..+.+ |+||+||++||++++
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  177 (274)
T PRK14265         98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA  177 (274)
T ss_pred             HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            456789999998531       1111110000000111122233444332    1234455555 999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh---------c--CCc-----------ccccCEEEEEc---------CCcccccCChHHHH
Q 023354          193 -DYIIYIID-VSGGDKIPRK---------G--GPG-----------ITQADLLVINK---------TDLASAIGADLAVM  239 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~---------~--~~~-----------i~~ad~ivi~K---------~g~i~~~g~~~e~~  239 (283)
                       +|.++++| |+++.|....         .  ..+           ..+||++++++         .|++++.|++.+++
T Consensus       178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        178 MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence             58888888 9998753211         0  111           16799999997         79999888887665


Q ss_pred             h
Q 023354          240 E  240 (283)
Q Consensus       240 ~  240 (283)
                      .
T Consensus       258 ~  258 (274)
T PRK14265        258 G  258 (274)
T ss_pred             h
Confidence            3

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.7e-21  Score=171.22  Aligned_cols=180  Identities=16%  Similarity=0.100  Sum_probs=118.9

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCHHHHHH
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDGEFLM  128 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~~~~~~  128 (283)
                      .++.+.|.  ....+++++|.. +|++++|+|+||||||||+++|+|+++|      +|+|.+.+.++..  .....+++
T Consensus         8 ~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   85 (252)
T PRK14272          8 QDVNIYYG--DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRR   85 (252)
T ss_pred             eeeEEEEC--CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhc
Confidence            34444443  235788999984 5999999999999999999999999875      4999998887653  22345567


Q ss_pred             hccccCCchHH--------HHHhCC-CCCCChHH-HHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHhc-
Q 023354          129 RNGALPEERIR--------AVETGG-CPHAAIRE-DISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRELA-  192 (283)
Q Consensus       129 ~ig~v~q~~~~--------~i~~~g-~~~~~~~~-~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al~-  192 (283)
                      .++|++|++..        .+.++. .......+ ..+.+.+.+..+..    ....+..+.+ |+||+||+++|++++ 
T Consensus        86 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~  165 (252)
T PRK14272         86 RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV  165 (252)
T ss_pred             eeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence            79999998531        111110 00000111 11122223333322    1234555555 999999999999998 


Q ss_pred             CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          193 DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +|.++++| |+++.|....           ...++           .+||++++++.|++.+.|++.+.+
T Consensus       166 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14272        166 EPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF  235 (252)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            58888888 9998653211           11221           579999999999999888776654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.6e-21  Score=171.31  Aligned_cols=181  Identities=12%  Similarity=0.037  Sum_probs=120.9

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc---ccC---CCcEEEEeecCCCC--CHHHHHH
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF---LRD---KYSLAAVTNDIFTK--EDGEFLM  128 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~---~~~---~g~i~i~~~d~~~~--~~~~~~~  128 (283)
                      .++...|..  ...+.+++|.. +|++++|+|+||||||||+++|+|+   +++   .|+|.+.+.++...  ....+++
T Consensus         7 ~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   84 (250)
T PRK14245          7 RDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK   84 (250)
T ss_pred             EEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh
Confidence            344444432  34788889984 5999999999999999999999996   344   49999999887542  2345567


Q ss_pred             hccccCCchHH-------HHHhCCCCCC-ChHH-HHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          129 RNGALPEERIR-------AVETGGCPHA-AIRE-DISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       129 ~ig~v~q~~~~-------~i~~~g~~~~-~~~~-~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      .++|+||++..       .+.++..... ...+ ....+.+.++.++...    ..+..+.+ |+||+||+++|++++ +
T Consensus        85 ~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  164 (250)
T PRK14245         85 NVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVS  164 (250)
T ss_pred             heEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence            89999997531       1111100000 0011 1123445566665432    23444555 999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.++++| |+++.|...+           .+.+           .++||++++++.|++.+.|+..+.+.
T Consensus       165 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~  234 (250)
T PRK14245        165 PSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT  234 (250)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence            8888888 9998653210           1112           16799999999999999887766653

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.2e-21  Score=169.78  Aligned_cols=180  Identities=13%  Similarity=0.065  Sum_probs=120.2

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC-CCHHHHHH
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT-KEDGEFLM  128 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~-~~~~~~~~  128 (283)
                      ..++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|      .|+|.+.+.++.. .+...+++
T Consensus         6 ~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~   83 (249)
T PRK14253          6 IENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRI   83 (249)
T ss_pred             EeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHh
Confidence            3444555532  35789999985 4999999999999999999999999875      4999998887642 33445667


Q ss_pred             hccccCCchHH-------HHHhCCCCC-CChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          129 RNGALPEERIR-------AVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       129 ~ig~v~q~~~~-------~i~~~g~~~-~~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      .++|++|++..       .+.++.... ....... ..+.+.++.+...    ...+..+.+ |+||+||+.||++++ +
T Consensus        84 ~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  163 (249)
T PRK14253         84 KVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAME  163 (249)
T ss_pred             heeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcC
Confidence            89999998531       111111000 0111111 1233344444321    233455555 999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354          194 YIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      |.|+++| |+++.|....           ...+           ..+||++++++.|++...|+..+.
T Consensus       164 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (249)
T PRK14253        164 PDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI  231 (249)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            8888888 9998653211           0112           157999999999999988776544

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=3.2e-21  Score=168.21  Aligned_cols=171  Identities=16%  Similarity=0.126  Sum_probs=119.2

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHhC-
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETG-  144 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~~-  144 (283)
                      -++..+++|..+ |++++++|+|||||||+||+|+|++.|+ |.|.+.+.+++. +..+..+.+++|+.... ...+++ 
T Consensus        37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechh
Confidence            358889999865 9999999999999999999999999998 999999998875 45566778888764432 111111 


Q ss_pred             -------CCCCCChHHHHHHHHHHHHH-ccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchh----
Q 023354          145 -------GCPHAAIREDISINLGPLEE-LSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPR----  209 (283)
Q Consensus       145 -------g~~~~~~~~~~~~~~~~l~~-l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~----  209 (283)
                             ...+.-....+...+..|.+ +.+......++-. |-||+.|+.+|.+|.+ |.|+++| ||-|+|...    
T Consensus       116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i  195 (325)
T COG4586         116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI  195 (325)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence                   00000011223333333333 3333344555544 9999999999999996 7788887 998876432    


Q ss_pred             ---------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          210 ---------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       210 ---------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                               ++..+           .+.|++|++++.|+++++|+..+..+
T Consensus       196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~  246 (325)
T COG4586         196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE  246 (325)
T ss_pred             HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence                     22222           27899999999999999987765443

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.85  E-value=6.5e-21  Score=184.66  Aligned_cols=169  Identities=14%  Similarity=0.070  Sum_probs=119.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC--C-CcEEEEeecCCCCCHHHH-HHhccccCCchH-----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI-----  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~-----  138 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|+++|  + |+|.+.+.++...+.... ++.+||+||++.     
T Consensus        14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   93 (500)
T TIGR02633        14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL   93 (500)
T ss_pred             eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence            35788999985 5999999999999999999999999986  4 999999888765544333 456999999753     


Q ss_pred             ---HHHHhCCCCC-----CChHHHHHHHHHHHHHccccccC-CCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          139 ---RAVETGGCPH-----AAIREDISINLGPLEELSNLFKA-DLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       139 ---~~i~~~g~~~-----~~~~~~~~~~~~~l~~l~~~~~~-d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                         +.+.++....     ....+....+.+.++.+...... +..+.+ ||||+||++||++++ +|.++++| |+++.|
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD  173 (500)
T TIGR02633        94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLT  173 (500)
T ss_pred             cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence               1222221110     01112223455677777765443 455666 999999999999998 58888888 999975


Q ss_pred             chh------------hcCCcc-----------cccCEEEEEcCCcccccCChHH
Q 023354          207 IPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       207 l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                      ...            +.+.++           .+||+|++++.|++...+++.+
T Consensus       174 ~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~  227 (500)
T TIGR02633       174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMST  227 (500)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCccc
Confidence            321            112221           6799999999999987665543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.3e-21  Score=172.48  Aligned_cols=185  Identities=16%  Similarity=0.116  Sum_probs=125.8

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCCC-HHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTKE-DGE  125 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~~-~~~  125 (283)
                      .....++.+.|..  ...+.+++|.. +|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++.... ...
T Consensus        21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   98 (276)
T PRK14271         21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE   98 (276)
T ss_pred             EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence            4566677777653  35788999985 5999999999999999999999999885     4 99999888776543 345


Q ss_pred             HHHhccccCCchH-------HHHHhCCCCC--CChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERI-------RAVETGGCPH--AAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~-------~~i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +++.++|++|++.       +.+.++....  ....+....+.+.++.+....    ..+..+.+ |+||+||++|||++
T Consensus        99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral  178 (276)
T PRK14271         99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL  178 (276)
T ss_pred             HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            5678999999753       1121111100  111111112334555554432    23344445 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      + +|.|+++| |+++.|....           ...+           ..+||++++++.|++...|+..+.+.
T Consensus       179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  251 (276)
T PRK14271        179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS  251 (276)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            8 58888888 9998653211           0112           16799999999999998887766543

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=2.5e-21  Score=171.45  Aligned_cols=171  Identities=13%  Similarity=0.095  Sum_probs=116.1

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCCC--HHHHHHhccccCCchHH
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIR  139 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~  139 (283)
                      ...+++++|.. +|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++....  ...+++.++|++|++..
T Consensus        18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~   97 (251)
T PRK14244         18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP   97 (251)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence            35788999984 599999999999999999999999975     34 99999887764322  22456789999998531


Q ss_pred             -------HHHhCC-C-CCC-ChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CC
Q 023354          140 -------AVETGG-C-PHA-AIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VS  202 (283)
Q Consensus       140 -------~i~~~g-~-~~~-~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt  202 (283)
                             .+.++. . ... ........+.+.++.++...    ..+..+.+ |+||+||+++|++++ +|.++++| |+
T Consensus        98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  177 (251)
T PRK14244         98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC  177 (251)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                   111110 0 000 01111123445666665532    23444555 999999999999998 58888887 99


Q ss_pred             CCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          203 GGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       203 ~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ++.|...+           .+.+           ..+||++++++.|++.+.++..+.+
T Consensus       178 ~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  236 (251)
T PRK14244        178 SALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF  236 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence            98653211           1122           1579999999999998877765543

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.1e-21  Score=169.66  Aligned_cols=186  Identities=15%  Similarity=0.102  Sum_probs=124.8

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCH
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KED  123 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~  123 (283)
                      +.+.+.++.+.|..  ...+.+++|.. +|++++|+|+||||||||+++|+|+++|      .|+|.+.+.++..  ...
T Consensus         6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~   83 (261)
T PRK14258          6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL   83 (261)
T ss_pred             ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence            34556666666643  24788899985 5999999999999999999999999987      4888888877642  223


Q ss_pred             HHHHHhccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHH
Q 023354          124 GEFLMRNGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSR  189 (283)
Q Consensus       124 ~~~~~~ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~  189 (283)
                      ..+++.++|++|++.       +.+.++.....  ...+....+.+.++.+...    ...+..+.+ |+||+||+++|+
T Consensus        84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar  163 (261)
T PRK14258         84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR  163 (261)
T ss_pred             HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence            355677999998753       11111100000  1111112334455555432    233555555 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcC-----CcccccCChHHH
Q 023354          190 ELA-DYIIYIID-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKT-----DLASAIGADLAV  238 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~-----g~i~~~g~~~e~  238 (283)
                      +++ +|.++++| |+++.|...             +.+.++           ++||+|++++.     |+++..|++.++
T Consensus       164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~  243 (261)
T PRK14258        164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKI  243 (261)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHH
Confidence            998 58888888 999865321             112221           68999999998     999888887776


Q ss_pred             Hh
Q 023354          239 ME  240 (283)
Q Consensus       239 ~~  240 (283)
                      +.
T Consensus       244 ~~  245 (261)
T PRK14258        244 FN  245 (261)
T ss_pred             Hh
Confidence            54

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.9e-21  Score=170.44  Aligned_cols=183  Identities=12%  Similarity=0.041  Sum_probs=121.5

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc--C----CCcEEEEeecCCCC--CHHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D----KYSLAAVTNDIFTK--EDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~--~----~g~i~i~~~d~~~~--~~~~  125 (283)
                      +.+.++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|++.  |    .|+|.+.+.++...  ....
T Consensus         7 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   84 (253)
T PRK14261          7 LSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA   84 (253)
T ss_pred             EEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence            444555555532  35788999985 499999999999999999999999865  2    49999998877643  2345


Q ss_pred             HHHhccccCCchHHH-------HHhCCCCCC--ChHHHHHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERIRA-------VETGGCPHA--AIREDISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~~~-------i~~~g~~~~--~~~~~~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +++.++|++|++..+       +.++.....  ........+.+.++.+...    ...+..+.+ |+||+||+.+|+++
T Consensus        85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  164 (253)
T PRK14261         85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL  164 (253)
T ss_pred             hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence            567799999986321       111110000  0011111233444444331    223445555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc----------c-cccCEEEEEcCCcccccCChHHHH
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG----------I-TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i-~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      + +|.++++| |+++.|....           ...+          + ..||++++++.|++...|+..+.+
T Consensus       165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14261        165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF  236 (253)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence            8 58888888 9998753211           0112          1 579999999999998888776554

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.9e-21  Score=170.13  Aligned_cols=182  Identities=16%  Similarity=0.140  Sum_probs=120.4

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCC--CHHHH
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEF  126 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~--~~~~~  126 (283)
                      .+.++.+.|..  .+.+.+++|.. +|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++...  ....+
T Consensus         5 ~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~   82 (250)
T PRK14262          5 EIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY   82 (250)
T ss_pred             EEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence            34445555532  35788999985 5999999999999999999999999873     5 9999988876532  12345


Q ss_pred             HHhccccCCchHH-------HHHhCCCCCC-ChHH-HHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHhc
Q 023354          127 LMRNGALPEERIR-------AVETGGCPHA-AIRE-DISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA  192 (283)
Q Consensus       127 ~~~ig~v~q~~~~-------~i~~~g~~~~-~~~~-~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al~  192 (283)
                      ++.++|++|++..       .+.++..... .... ....+.+.++.++...    ..+..+.+ |+||+||+++|++++
T Consensus        83 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~  162 (250)
T PRK14262         83 RKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA  162 (250)
T ss_pred             hhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence            6779999998531       1111100000 0111 1112334455544321    23555555 999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          193 -DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                       +|.++++| |+++.|...+           ...+           ..+||++++++.|++...|+..+..
T Consensus       163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14262        163 VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV  233 (250)
T ss_pred             CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence             58788877 9998753211           0112           1679999999999999888766554

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=9.6e-21  Score=168.90  Aligned_cols=172  Identities=16%  Similarity=0.091  Sum_probs=116.7

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCC--CHHHHHHhccccCCchHH
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDGEFLMRNGALPEERIR  139 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~~  139 (283)
                      ...+++++|..+ |++++|+|+||||||||+++|+|+++|     + |+|.+.+.++...  ....+++.++|++|++..
T Consensus        21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  100 (261)
T PRK14263         21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP  100 (261)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence            457888999854 999999999999999999999999975     4 9999999887532  233456779999998631


Q ss_pred             -------HHHhCCCCCCChHHHHHHHHHHHHHccccc----cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354          140 -------AVETGGCPHAAIREDISINLGPLEELSNLF----KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (283)
Q Consensus       140 -------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~----~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~  205 (283)
                             .+.++........+....+.+.++.+.+..    ..+..+.+ |+||+||+.+||+++ +|.++++| |+++.
T Consensus       101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgL  180 (261)
T PRK14263        101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL  180 (261)
T ss_pred             ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence                   111111100011111123445566554422    22333444 999999999999998 58888888 99997


Q ss_pred             Cchh-----------hcCCc-----------ccccCEEEEEc--------CCcccccCChHHHHh
Q 023354          206 KIPR-----------KGGPG-----------ITQADLLVINK--------TDLASAIGADLAVME  240 (283)
Q Consensus       206 ~l~~-----------~~~~~-----------i~~ad~ivi~K--------~g~i~~~g~~~e~~~  240 (283)
                      |...           ....+           ..+||++++++        .|++++.|+..+.+.
T Consensus       181 D~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~  245 (261)
T PRK14263        181 DPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQ  245 (261)
T ss_pred             CHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHh
Confidence            5321           01112           16799999996        789988887766543

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=5.4e-21  Score=169.30  Aligned_cols=183  Identities=14%  Similarity=0.043  Sum_probs=121.8

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~~  125 (283)
                      +.+.++.+.|..  .+.+++++|.. +|++++|+|+||||||||+++|+|+++     |. |+|.+.+.++...  ....
T Consensus         5 l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~   82 (251)
T PRK14251          5 ISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE   82 (251)
T ss_pred             EEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence            344555555542  35788899985 599999999999999999999999986     34 9999998876532  2234


Q ss_pred             HHHhccccCCchHH-------HHHhCCCCC-CChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERIR-------AVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +++.++|++|++..       .+.++.... ....+.. ..+.+.++.++..    ...+..+.+ |+||+||+++|+++
T Consensus        83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral  162 (251)
T PRK14251         83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL  162 (251)
T ss_pred             hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence            56679999988531       111110000 0001111 1233455555442    233555555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      + +|.++++| |+++.|....           ...+           ..+||++++++.|++...++..+.+
T Consensus       163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14251        163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF  234 (251)
T ss_pred             hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence            8 58888888 9998653211           1112           1579999999999998887776554

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.6e-21  Score=171.82  Aligned_cols=184  Identities=14%  Similarity=0.075  Sum_probs=123.2

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCC--CCHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFT--KEDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~--~~~~  124 (283)
                      .....++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++..  ....
T Consensus        24 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~  101 (271)
T PRK14238         24 VFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE  101 (271)
T ss_pred             EEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence            4556666666643  35788999985 599999999999999999999999986     45 999998887743  2334


Q ss_pred             HHHHhccccCCchH-------HHHHhCC-CCCCChHHHH-HHHHHHHHHcc----ccccCCCcccC-CchHHHHHHHHHH
Q 023354          125 EFLMRNGALPEERI-------RAVETGG-CPHAAIREDI-SINLGPLEELS----NLFKADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       125 ~~~~~ig~v~q~~~-------~~i~~~g-~~~~~~~~~~-~~~~~~l~~l~----~~~~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                      .+++.++|++|++.       +.+.++. .......... ..+.+.++.+.    .....+..+.+ |+||+||++||++
T Consensus       102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lara  181 (271)
T PRK14238        102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARC  181 (271)
T ss_pred             HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHH
Confidence            56678999999853       1121110 0000011111 12233344332    12233455555 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ++ +|.++++| |+++.|....           ...+           ..+||++++++.|++...|+..+.+
T Consensus       182 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~  254 (271)
T PRK14238        182 LAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF  254 (271)
T ss_pred             HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            98 58888888 9998753211           0112           1579999999999998888766554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.85  E-value=8.2e-21  Score=184.01  Aligned_cols=178  Identities=16%  Similarity=0.069  Sum_probs=124.9

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig  131 (283)
                      +...++++.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.+|
T Consensus         5 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~   82 (501)
T PRK11288          5 LSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA   82 (501)
T ss_pred             EEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence            334455555532  34788999985 59999999999999999999999999987 9999988887544332 3456799


Q ss_pred             ccCCchH--------HHHHhCCCCC--C--ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354          132 ALPEERI--------RAVETGGCPH--A--AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~--~--~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~  197 (283)
                      |++|++.        +.+.++....  .  ...+....+.+.++.+++....+..+.+ ||||+||++||++++ +|.|+
T Consensus        83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  162 (501)
T PRK11288         83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI  162 (501)
T ss_pred             EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            9999753        1222221111  1  1112223456678888776666777777 999999999999998 58888


Q ss_pred             EEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCC
Q 023354          198 IID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGA  234 (283)
Q Consensus       198 llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~  234 (283)
                      |+| |+++.|...            +.+.++           .+||++++++.|.+...++
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~  223 (501)
T PRK11288        163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD  223 (501)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence            888 999875321            112221           6799999999999876443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.2e-20  Score=182.79  Aligned_cols=174  Identities=21%  Similarity=0.189  Sum_probs=123.4

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhccccCCchH--------
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI--------  138 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~--------  138 (283)
                      ..+.+++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++....+. .+++.++|++|++.        
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            36788888854 9999999999999999999999999987 9999988777543333 34457999999752        


Q ss_pred             ---HHHHhCCCCC----C---ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          139 ---RAVETGGCPH----A---AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       139 ---~~i~~~g~~~----~---~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                         +.+.++....    .   ........+.+.++.++.. ...+..+.+ ||||+||+.||++++ +|.|+++| ||++
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~  426 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG  426 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence               1121211110    0   0111223455678888763 456777777 999999999999998 58888888 9999


Q ss_pred             CCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354          205 DKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       205 ~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      .|...            +.+.+           ..+||++++++.|++.+.|+..+.....+
T Consensus       427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~  488 (501)
T PRK11288        427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQA  488 (501)
T ss_pred             CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCCHHHH
Confidence            76431            11222           16899999999999988877655443333

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.84  E-value=8.3e-21  Score=157.02  Aligned_cols=171  Identities=14%  Similarity=0.101  Sum_probs=124.1

Q ss_pred             CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (283)
Q Consensus        70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------  139 (283)
                      .+...++|+ .+|..++|+|.||||||||.|+|+|.+.|+ |+|.+++..+.--+-..+.+.|-++||++..        
T Consensus        27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i  106 (267)
T COG4167          27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI  106 (267)
T ss_pred             hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence            367788888 459999999999999999999999999998 9999999887655555566789999999851        


Q ss_pred             --HHHhCCCCC--CChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC-----
Q 023354          140 --AVETGGCPH--AAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK-----  206 (283)
Q Consensus       140 --~i~~~g~~~--~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~-----  206 (283)
                        .++.+....  .+.......+.+.|..+++... .+..+.- |.||+||+++||||. +|.|++.| +-.+.|     
T Consensus       107 GqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrs  186 (267)
T COG4167         107 GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRS  186 (267)
T ss_pred             hhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHH
Confidence              111111111  1222333456677777766543 3333333 999999999999997 78888877 555432     


Q ss_pred             --------chhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          207 --------IPRKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       207 --------l~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                              ++++.+..           -..+|.|+++..|.+++.|++.+++.
T Consensus       187 Ql~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a  239 (267)
T COG4167         187 QLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA  239 (267)
T ss_pred             HHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhc
Confidence                    33333322           16799999999999999999988876

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.84  E-value=3.5e-21  Score=167.62  Aligned_cols=161  Identities=17%  Similarity=0.076  Sum_probs=113.9

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------  139 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------  139 (283)
                      ...+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...   . .+.++|+||++..       
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~---~-~~~~~~~~q~~~~~~~~t~~   88 (223)
T TIGR03740        13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK---D-LHKIGSLIESPPLYENLTAR   88 (223)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc---c-cccEEEEcCCCCccccCCHH
Confidence            35788889984 59999999999999999999999999987 9999888765421   1 2478999887521       


Q ss_pred             -HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354          140 -AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------  209 (283)
Q Consensus       140 -~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------  209 (283)
                       .+.+.......   ....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|...      
T Consensus        89 ~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~  165 (223)
T TIGR03740        89 ENLKVHTTLLGL---PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE  165 (223)
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHH
Confidence             11110000000   012344566777666656666666 999999999999998 58888888 999875321      


Q ss_pred             ------hcCCc-----------ccccCEEEEEcCCcccccCChH
Q 023354          210 ------KGGPG-----------ITQADLLVINKTDLASAIGADL  236 (283)
Q Consensus       210 ------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~  236 (283)
                            +.+.+           ..+||++++++.|++...|++.
T Consensus       166 ~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             HHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence                  11112           1679999999999998876543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=3.8e-21  Score=173.68  Aligned_cols=184  Identities=17%  Similarity=0.142  Sum_probs=122.3

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~  124 (283)
                      .+...++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+..     |+ |+|.+.+.++...  ...
T Consensus        39 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~  116 (286)
T PRK14275         39 HVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV  116 (286)
T ss_pred             EEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence            3455566666643  34788999985 599999999999999999999999854     36 9999988776532  223


Q ss_pred             HHHHhccccCCchHH-------HHHhCCCCC-CChHH-HHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHH
Q 023354          125 EFLMRNGALPEERIR-------AVETGGCPH-AAIRE-DISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       125 ~~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~-~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                      .+++.++|++|++..       .+.++.... ..... ....+.+.++.++.    ....+..+.+ |+||+||+.||++
T Consensus       117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra  196 (286)
T PRK14275        117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVART  196 (286)
T ss_pred             HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHH
Confidence            456789999998631       111111000 00011 11223344555443    2234555555 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchh---------h--cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          191 LA-DYIIYIID-VSGGDKIPR---------K--GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~---------~--~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ++ +|.++|+| |+++.|...         +  ...+           ..+||++++++.|++...|+..+.+
T Consensus       197 L~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~  269 (286)
T PRK14275        197 LAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF  269 (286)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            98 58888888 999875321         1  0111           1579999999999999888766554

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.84  E-value=4.7e-21  Score=164.59  Aligned_cols=139  Identities=16%  Similarity=0.097  Sum_probs=101.0

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHHHHhccccCCchHHH---
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRA---  140 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q~~~~~---  140 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....    ..+++.++|++|++..+   
T Consensus        12 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   91 (206)
T TIGR03608        12 IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE   91 (206)
T ss_pred             EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence            5788999984 59999999999999999999999999987 999999887653321    23456799999986311   


Q ss_pred             -----HHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          141 -----VETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       141 -----i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                           +.++.... ....+....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus        92 t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~  168 (206)
T TIGR03608        92 TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPK  168 (206)
T ss_pred             cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHH
Confidence                 11110000 01111223445677777766666777777 999999999999998 58888888 99997653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.84  E-value=1.7e-20  Score=163.41  Aligned_cols=157  Identities=21%  Similarity=0.248  Sum_probs=110.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH----------HHHhCCCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR----------AVETGGCP  147 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~----------~i~~~g~~  147 (283)
                      .+|++++|+|+||||||||+++|+|+++|+ |+|.+++.++.     ..++.++|++|++..          .+.++...
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence            469999999999999999999999999987 99999887642     234679999997521          11122110


Q ss_pred             C-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----------
Q 023354          148 H-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----------  209 (283)
Q Consensus       148 ~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----------  209 (283)
                      .     .........+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|...          
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~  158 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIE  158 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            0     00112223455677777766656666666 999999999999998 48888887 999875321          


Q ss_pred             --hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          210 --KGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       210 --~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                        +.+.+           ...||+++++ .|++...|+..+....
T Consensus       159 ~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~  202 (223)
T TIGR03771       159 LAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP  202 (223)
T ss_pred             HHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence              11222           1579999998 6999888877666554

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.84  E-value=8.6e-21  Score=183.86  Aligned_cols=168  Identities=15%  Similarity=0.156  Sum_probs=120.4

Q ss_pred             CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhccccCCchH---------
Q 023354           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI---------  138 (283)
Q Consensus        71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~---------  138 (283)
                      .+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...... .+++.+||++|++.         
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t  346 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS  346 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence            5788888854 9999999999999999999999999987 9999998887654433 34557999999841         


Q ss_pred             --HHHHhCCCC---C----CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354          139 --RAVETGGCP---H----AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (283)
Q Consensus       139 --~~i~~~g~~---~----~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~  205 (283)
                        +.+.++...   .    ....+....+.+.++.++.. ...+..+.+ |+||+||+.||++++ +|.++++| |+++.
T Consensus       347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~L  426 (501)
T PRK10762        347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGV  426 (501)
T ss_pred             HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Confidence              112221110   0    01112223455678887774 456777777 999999999999998 58888888 99997


Q ss_pred             Cchhh------------cCCc-----------ccccCEEEEEcCCcccccCChHHH
Q 023354          206 KIPRK------------GGPG-----------ITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       206 ~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      |....            .+.+           ..+||++++++.|++...++..+.
T Consensus       427 D~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        427 DVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             CHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence            64211            1112           167999999999999876665544

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.84  E-value=6.2e-21  Score=197.84  Aligned_cols=190  Identities=16%  Similarity=0.137  Sum_probs=147.4

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .|.+.+.+....|.+...++|++++|..+ ||+|||+|+.|||||||+++|.++..|. |+|.+++.|+.+..-.++|++
T Consensus      1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred             CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence            58899999999999999999999999966 9999999999999999999999999977 999999999999999999999


Q ss_pred             ccccCCchHHHHH---hCCCCCCCh-HHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhcC-Cc
Q 023354          130 NGALPEERIRAVE---TGGCPHAAI-REDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELAD-YI  195 (283)
Q Consensus       130 ig~v~q~~~~~i~---~~g~~~~~~-~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~~-~~  195 (283)
                      ++++||+|..+-.   .+..|.... .+.+..+++  .|..+.  ...++|..+.|     |.||||-+++||||.. ..
T Consensus      1216 lsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred             CeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence            9999999964432   233333321 222222222  122222  22357888877     9999999999999995 78


Q ss_pred             EEEEe-CCCCCCch----------hhc-----------CCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          196 IYIID-VSGGDKIP----------RKG-----------GPGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       196 l~llD-pt~g~~l~----------~~~-----------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |+++| +|..-|..          .+.           ..++-.+|+|++++.|++.+.|+|.+++.+
T Consensus      1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSD 1363 (1381)
T ss_pred             EEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhC
Confidence            88888 77654321          111           123467999999999999999999887753

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.84  E-value=2e-20  Score=181.73  Aligned_cols=169  Identities=16%  Similarity=0.133  Sum_probs=120.6

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhccccCCchH---------
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI---------  138 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~---------  138 (283)
                      .+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++....... +++.++|+||++.         
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t  357 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP  357 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence            478888884 59999999999999999999999999987 99999888876554443 3456999999741         


Q ss_pred             --HHHHhC--C-CCC-CChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          139 --RAVETG--G-CPH-AAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       139 --~~i~~~--g-~~~-~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                        +.+...  . ... .........+.+.|+.++.. ...+..+.+ |+||+||+.||++++ +|.|+|+| |+++.|..
T Consensus       358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~  437 (510)
T PRK15439        358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS  437 (510)
T ss_pred             HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence              111110  0 000 01111122345678888775 566777777 999999999999998 58888888 99997642


Q ss_pred             hh------------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          209 RK------------GGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       209 ~~------------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ..            .+.++           .+||++++++.|++...+++.++.
T Consensus       438 ~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  491 (510)
T PRK15439        438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN  491 (510)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence            11            12221           679999999999998877665443

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=8.9e-21  Score=167.94  Aligned_cols=184  Identities=14%  Similarity=0.031  Sum_probs=121.5

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cC----CCcEEEEeecCCCC--CHHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RD----KYSLAAVTNDIFTK--EDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~----~g~i~i~~~d~~~~--~~~~  125 (283)
                      ....++.+.|..  ...+++++|.. +|++++|+||||||||||+++|+|++  .|    +|+|.+.+.++...  ....
T Consensus         6 l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14239          6 LQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD   83 (252)
T ss_pred             EEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence            334455555542  35788999985 59999999999999999999999985  35    49999998877532  2234


Q ss_pred             HHHhccccCCchHH-------HHHhCCCCC-CChHHH-HHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERIR-------AVETGGCPH-AAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~~-------~i~~~g~~~-~~~~~~-~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +++.++|++|++..       .+.++.... ...... ...+.+.++.+...    ...+..+.+ |+||+||+++|+++
T Consensus        84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14239         84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL  163 (252)
T ss_pred             hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence            56679999998531       111110000 001111 12233445555431    223455555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      + +|.++++| |+++.|....           ...+           ..+||++++++.|++.+.|+..+.+.
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  236 (252)
T PRK14239        164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM  236 (252)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            8 58888888 9998653211           0112           16799999999999998887766543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.9e-21  Score=168.28  Aligned_cols=182  Identities=15%  Similarity=0.079  Sum_probs=120.2

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC------CcEEEEeecCCCC--CHHHH
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK------YSLAAVTNDIFTK--EDGEF  126 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~------g~i~i~~~d~~~~--~~~~~  126 (283)
                      ...+..+.|..  ...+++++|.. +|++++|+||||||||||+++|+|+++|+      |+|.+.+.++...  ....+
T Consensus         6 ~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~   83 (251)
T PRK14249          6 KIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL   83 (251)
T ss_pred             EEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence            33445555532  34788999984 59999999999999999999999999874      8999988876532  23355


Q ss_pred             HHhccccCCchHH-------HHHhCCCCCC-ChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc
Q 023354          127 LMRNGALPEERIR-------AVETGGCPHA-AIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA  192 (283)
Q Consensus       127 ~~~ig~v~q~~~~-------~i~~~g~~~~-~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~  192 (283)
                      ++.++|++|++..       .+.++..... ...+.. ..+.+.+..+...    ...+..+.+ |+||+||+++||+++
T Consensus        84 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~  163 (251)
T PRK14249         84 RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA  163 (251)
T ss_pred             hceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            6789999998631       1111111000 111111 1222334443321    223444555 999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          193 -DYIIYIID-VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                       +|.++++| |+++.|....           .+.++           ..||++++++.|.+...|+..+.+
T Consensus       164 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14249        164 IEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF  234 (251)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence             58888888 9998753211           11221           578999999999998887766554

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.84  E-value=6.9e-21  Score=185.32  Aligned_cols=173  Identities=16%  Similarity=0.169  Sum_probs=118.9

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEe-----------------------ecC---
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVT-----------------------NDI---  118 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~-----------------------~d~---  118 (283)
                      ...+++++|.. +|++++|+||||||||||+++|+|++  +|+ |+|.+.+                       .++   
T Consensus        13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~   92 (520)
T TIGR03269        13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE   92 (520)
T ss_pred             eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence            35788999985 59999999999999999999999996  576 9998862                       111   


Q ss_pred             ----CCCCH---HHHHHhccccCCch-H--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-Cch
Q 023354          119 ----FTKED---GEFLMRNGALPEER-I--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGG  180 (283)
Q Consensus       119 ----~~~~~---~~~~~~ig~v~q~~-~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgG  180 (283)
                          .....   ..+++.++|++|++ .        +.+.++.... ....+....+.+.++.+++....+..+.+ |||
T Consensus        93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG  172 (520)
T TIGR03269        93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGG  172 (520)
T ss_pred             chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHH
Confidence                01011   23456799999962 1        1122211000 11122223456678888776666777777 999


Q ss_pred             HHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCC
Q 023354          181 DNLAANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGA  234 (283)
Q Consensus       181 q~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~  234 (283)
                      |+||++||++++ +|.++|+| |+++.|..             ++.+.++           .+||++++++.|++...|+
T Consensus       173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~  252 (520)
T TIGR03269       173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGT  252 (520)
T ss_pred             HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecC
Confidence            999999999999 58888888 99986532             1112221           6799999999999988777


Q ss_pred             hHHHHhH
Q 023354          235 DLAVMER  241 (283)
Q Consensus       235 ~~e~~~~  241 (283)
                      ..+.+..
T Consensus       253 ~~~~~~~  259 (520)
T TIGR03269       253 PDEVVAV  259 (520)
T ss_pred             HHHHHHH
Confidence            6665543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.84  E-value=1.7e-20  Score=201.98  Aligned_cols=183  Identities=17%  Similarity=0.093  Sum_probs=132.4

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+....|......++++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ...++++.+||
T Consensus       929 L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~ 1007 (2272)
T TIGR01257       929 VCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGM 1007 (2272)
T ss_pred             EEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEE
Confidence            3344444455433456889999985 59999999999999999999999999998 999999988754 33456678999


Q ss_pred             cCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      +||+..        +.+.+..... ....+....+.+.|+.+++....+..+.+ ||||+||+++|++++ +|.|+++| 
T Consensus      1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257      1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred             EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            999853        2222211111 11112223456678888887777877777 999999999999998 58888877 


Q ss_pred             CCCCCCchhh-----------cCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          201 VSGGDKIPRK-----------GGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       201 pt~g~~l~~~-----------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      |++|.|...+           .+.++           ..||+|++++.|++...|++..+
T Consensus      1088 PTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257      1088 PTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred             CCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            9999764211           12221           57999999999999998877654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.84  E-value=6.7e-21  Score=205.12  Aligned_cols=183  Identities=16%  Similarity=0.101  Sum_probs=131.7

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+.+..|......++++++|..+ |++++|+||||||||||+|+|+|+++|+ |+|.+.+.++.. ...+.++.+||
T Consensus      1938 L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy 2016 (2272)
T TIGR01257      1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGY 2016 (2272)
T ss_pred             EEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEE
Confidence            33444444454333568999999855 9999999999999999999999999998 999999988754 33455678999


Q ss_pred             cCCchH--------HHHHhCCCCCCChHHH-HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERI--------RAVETGGCPHAAIRED-ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~--------~~i~~~g~~~~~~~~~-~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      +||...        +.+.+.+.......+. ...+.+.|+.+++....+..+.+ ||||+||+.+|++++ +|.|+++| 
T Consensus      2017 ~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE 2096 (2272)
T TIGR01257      2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE 2096 (2272)
T ss_pred             EeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            999752        1222211111111111 22344577888777777888877 999999999999998 48888877 


Q ss_pred             CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHH
Q 023354          201 VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       201 pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      |++|.|...            +.+.++           .+||+|++++.|++...|++.+.
T Consensus      2097 PTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257      2097 PTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999976421            112221           57999999999999998887654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.3e-21  Score=169.37  Aligned_cols=185  Identities=15%  Similarity=0.080  Sum_probs=122.5

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCC--CCHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFT--KEDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~--~~~~  124 (283)
                      .+...++.+.|..  ...+.+++|.. +|++++|+|+||||||||+++|+|+++|      +|+|.+.+.++..  ....
T Consensus         7 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   84 (259)
T PRK14260          7 AIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ   84 (259)
T ss_pred             eEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence            3445555555542  35788999985 5999999999999999999999999873      4999998887643  2234


Q ss_pred             HHHHhccccCCchHHH-------HHhCCCCCC-ChH-HHHHHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHH
Q 023354          125 EFLMRNGALPEERIRA-------VETGGCPHA-AIR-EDISINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       125 ~~~~~ig~v~q~~~~~-------i~~~g~~~~-~~~-~~~~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                      .++..++|++|++..+       +.++..... ... +....+.+.++.++.    ....+..+.+ |+||+||++||++
T Consensus        85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  164 (259)
T PRK14260         85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA  164 (259)
T ss_pred             hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence            4567899999986311       111100000 001 111223344555443    2234555556 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEc-----CCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINK-----TDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K-----~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.++++| |+++.|...+           ...+           ..+||++++++     .|+++..|++.+.+.
T Consensus       165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~  243 (259)
T PRK14260        165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS  243 (259)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence            98 58888888 9998763211           0112           16799999998     489988888776643

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.84  E-value=1.1e-20  Score=173.52  Aligned_cols=153  Identities=22%  Similarity=0.173  Sum_probs=110.9

Q ss_pred             EEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhCCCC-CCChHHHH
Q 023354           86 IGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCP-HAAIREDI  155 (283)
Q Consensus        86 ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~g~~-~~~~~~~~  155 (283)
                      |+||||||||||+++|+|+++|+ |+|.+.+.++.....  .++.++|++|++.        +.+.++... .....+..
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            68999999999999999999987 999999988765443  3467999999853        112222110 11111112


Q ss_pred             HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCc-----
Q 023354          156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPG-----  214 (283)
Q Consensus       156 ~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~-----  214 (283)
                      ..+.+.++.+++....+..+.+ |+||+||++|||+++ +|.++++| |+++.|..             ++.+.+     
T Consensus        79 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT  158 (325)
T TIGR01187        79 PRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT  158 (325)
T ss_pred             HHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            3455677777777667777777 999999999999998 58888888 99986532             111222     


Q ss_pred             ------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          215 ------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       215 ------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                            ..+||++++++.|++...|++.+++.
T Consensus       159 Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~  190 (325)
T TIGR01187       159 HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE  190 (325)
T ss_pred             CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence                  15799999999999998888877765

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.2e-20  Score=167.80  Aligned_cols=185  Identities=15%  Similarity=0.130  Sum_probs=122.9

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe------ecCCCCCHHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT------NDIFTKEDGE  125 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~------~d~~~~~~~~  125 (283)
                      .+...+.+..|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+      .++.......
T Consensus        10 ~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~   87 (257)
T PRK14246         10 VFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK   87 (257)
T ss_pred             heeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence            3444555555532  45789999985 59999999999999999999999999886 7766554      3443344455


Q ss_pred             HHHhccccCCchHH--------HHHhCCCCCC-ChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHH
Q 023354          126 FLMRNGALPEERIR--------AVETGGCPHA-AIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       126 ~~~~ig~v~q~~~~--------~i~~~g~~~~-~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                      +++.++|++|++..        .+.++..... ...... ..+.+.++.+...    ...+..+.. |+||+||+++|++
T Consensus        88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara  167 (257)
T PRK14246         88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA  167 (257)
T ss_pred             HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence            67789999998531        1111111000 111111 2344556665543    223444555 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCCc----------c-cccCEEEEEcCCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG----------I-TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i-~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.++++| |+++.|...+           ...+          + ..||++++++.|++...|+..+.+.
T Consensus       168 l~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~  241 (257)
T PRK14246        168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT  241 (257)
T ss_pred             HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            98 58888888 9998754311           0112          1 6799999999999988887766553

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.84  E-value=1.4e-20  Score=154.04  Aligned_cols=162  Identities=15%  Similarity=0.153  Sum_probs=118.4

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH---HH-HHhccccCCchH-----
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG---EF-LMRNGALPEERI-----  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~---~~-~~~ig~v~q~~~-----  138 (283)
                      ..+..+++.. +|+.++|+||+||||||||-.|+|+..|+ |+|.+.+.++.+.+..   .+ .+++|+|||...     
T Consensus        24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l  103 (228)
T COG4181          24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL  103 (228)
T ss_pred             eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc
Confidence            4678888875 49999999999999999999999999998 9999999999887642   22 346999999763     


Q ss_pred             ---HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCC-----
Q 023354          139 ---RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDK-----  206 (283)
Q Consensus       139 ---~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~-----  206 (283)
                         +.+.++..... ...+......+.|+.+++......+..+ |||++||++|||+++- |.|++-| ||...|     
T Consensus       104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~  183 (228)
T COG4181         104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD  183 (228)
T ss_pred             hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence               22222211111 1222334566788999888877777777 9999999999999994 8888888 776543     


Q ss_pred             --------chhhcCCcc----------cccCEEEEEcCCcccc
Q 023354          207 --------IPRKGGPGI----------TQADLLVINKTDLASA  231 (283)
Q Consensus       207 --------l~~~~~~~i----------~~ad~ivi~K~g~i~~  231 (283)
                              ++++.+.++          ..|+|.+-+..|++..
T Consensus       184 ~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~  226 (228)
T COG4181         184 KIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE  226 (228)
T ss_pred             HHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence                    122333321          5688888888887764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.84  E-value=1.6e-20  Score=181.99  Aligned_cols=180  Identities=16%  Similarity=0.136  Sum_probs=124.8

Q ss_pred             cccccCCCCCCCC-CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-C-CcEEEEeecCCCCCH-HHHHHh
Q 023354           55 SHEPIYSPGYFSR-RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFTKED-GEFLMR  129 (283)
Q Consensus        55 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~-g~i~i~~~d~~~~~~-~~~~~~  129 (283)
                      ....+.+..|... ....+++++|.. +|++++|+||||||||||+++|+|+++| + |+|.+.+.++..... ..+++.
T Consensus       258 l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~  337 (500)
T TIGR02633       258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG  337 (500)
T ss_pred             EEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            4555666555322 335788999984 5999999999999999999999999984 4 999998887754333 345667


Q ss_pred             ccccCCchH-----------HHHHhCCC---CC---CChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHH
Q 023354          130 NGALPEERI-----------RAVETGGC---PH---AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       130 ig~v~q~~~-----------~~i~~~g~---~~---~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                      +||++|++.           +.+.++..   ..   .........+.+.++.+.... ..+..+.+ |+||+||+.||++
T Consensus       338 i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~a  417 (500)
T TIGR02633       338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKM  417 (500)
T ss_pred             CEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHH
Confidence            999999841           11112111   00   011111234556788887753 46777777 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh------------cCCc-----------ccccCEEEEEcCCcccccCC
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK------------GGPG-----------ITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~  234 (283)
                      ++ +|.++|+| ||++.|....            .+.+           .++||++++++.|++....+
T Consensus       418 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~  486 (500)
T TIGR02633       418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV  486 (500)
T ss_pred             HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence            98 58888888 9999764311            1222           16799999999999876543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.3e-20  Score=169.08  Aligned_cols=184  Identities=13%  Similarity=0.060  Sum_probs=122.9

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCCCC--CHH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIFTK--EDG  124 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~~~--~~~  124 (283)
                      .+...++.+.|..  ...+.+++|.. +|++++|+|+||||||||+++|+|++++     + |+|.+.+.++...  ...
T Consensus        25 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~  102 (272)
T PRK14236         25 ALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA  102 (272)
T ss_pred             EEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence            3555566666642  35788899985 5999999999999999999999999873     4 9999998887542  234


Q ss_pred             HHHHhccccCCchHH-------HHHhC-CCCCCChHHH-HHHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHH
Q 023354          125 EFLMRNGALPEERIR-------AVETG-GCPHAAIRED-ISINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRE  190 (283)
Q Consensus       125 ~~~~~ig~v~q~~~~-------~i~~~-g~~~~~~~~~-~~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~a  190 (283)
                      .+++.++|++|++..       .+.++ .......... ...+.+.++.+...    ...+..+.+ |+||+||+++|++
T Consensus       103 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara  182 (272)
T PRK14236        103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARA  182 (272)
T ss_pred             HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHH
Confidence            556789999997531       11111 0000001111 11233445544332    223445555 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ++ +|.++++| |+++.|....           ...+           .+.||++++++.|++...|+..+.+
T Consensus       183 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  255 (272)
T PRK14236        183 IAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF  255 (272)
T ss_pred             HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence            98 58888888 9998753210           0112           1579999999999998888766544

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=8.9e-21  Score=168.00  Aligned_cols=184  Identities=11%  Similarity=0.024  Sum_probs=121.2

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc--C----CCcEEEEeecCCCC--CHHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR--D----KYSLAAVTNDIFTK--EDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~--~----~g~i~i~~~d~~~~--~~~~  125 (283)
                      +...++++.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++  |    +|+|.+.+.++...  ....
T Consensus         6 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14255          6 ITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ   83 (252)
T ss_pred             EEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence            344555555542  35788999985 599999999999999999999999864  3    49999998877532  2234


Q ss_pred             HHHhccccCCchHH-------HHHhCC-CCCCChHHHH-HHHHHHHHHccc----cccCCCcccC-CchHHHHHHHHHHh
Q 023354          126 FLMRNGALPEERIR-------AVETGG-CPHAAIREDI-SINLGPLEELSN----LFKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       126 ~~~~ig~v~q~~~~-------~i~~~g-~~~~~~~~~~-~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +++.++|++|++..       .+.++. .......+.. ..+.+.++.+..    ....+..+.+ |+||+||++||+++
T Consensus        84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral  163 (252)
T PRK14255         84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL  163 (252)
T ss_pred             hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence            55679999997531       111110 0000011111 122334444432    1233455555 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      + +|.++|+| |+++.|...+           ...+           .++||+|++++.|++...+++.+.+.
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  236 (252)
T PRK14255        164 AVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL  236 (252)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            8 58888888 9998754211           0112           16799999999999998887766653

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.83  E-value=2.2e-20  Score=176.98  Aligned_cols=165  Identities=15%  Similarity=0.108  Sum_probs=124.4

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH-HHhccccCCchH--------
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERI--------  138 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~--------  138 (283)
                      .+|++++|..+ |++++|+|.||||||||+|.|+|.++|+ |+|.+++......++.+- ...|..|+|+..        
T Consensus        22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa  101 (500)
T COG1129          22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA  101 (500)
T ss_pred             eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence            58999999855 9999999999999999999999999998 999999988876665543 446888999864        


Q ss_pred             HHHHhCCCCCC-----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc---
Q 023354          139 RAVETGGCPHA-----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI---  207 (283)
Q Consensus       139 ~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l---  207 (283)
                      +.+.++..+..     ..+.......+.|..++....++.++.+ |.||+|.++||+|+. ++.|+++| ||+.+..   
T Consensus       102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~  181 (500)
T COG1129         102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET  181 (500)
T ss_pred             HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            33445554433     1233334566677777664447777877 999999999999998 57788888 9987421   


Q ss_pred             ----------hhhcC----------CcccccCEEEEEcCCcccccCC
Q 023354          208 ----------PRKGG----------PGITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       208 ----------~~~~~----------~~i~~ad~ivi~K~g~i~~~g~  234 (283)
                                ..+..          ..++.||+|++++.|+.+...+
T Consensus       182 ~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         182 ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             HHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence                      11111          1148999999999999877544

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.83  E-value=1.4e-20  Score=200.59  Aligned_cols=174  Identities=13%  Similarity=0.087  Sum_probs=123.1

Q ss_pred             ccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEE-eecCCCCCHHHHHHh
Q 023354           54 HSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAV-TNDIFTKEDGEFLMR  129 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~-~~d~~~~~~~~~~~~  129 (283)
                      .+.+.++.+.|+... .+.+++++|..+ |++++|+||||||||||+++|+|++.|+ |+|.+. +.++...+...+++.
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~  461 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK  461 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence            578889999998654 368999999855 9999999999999999999999999998 999995 577777777778889


Q ss_pred             ccccCCchH-------HHHHhCCCCCC-----------------------------------------ChH---------
Q 023354          130 NGALPEERI-------RAVETGGCPHA-----------------------------------------AIR---------  152 (283)
Q Consensus       130 ig~v~q~~~-------~~i~~~g~~~~-----------------------------------------~~~---------  152 (283)
                      +|||+|++.       +.+.++.....                                         ...         
T Consensus       462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  541 (1466)
T PTZ00265        462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY  541 (1466)
T ss_pred             ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence            999999874       22333321000                                         000         


Q ss_pred             --HHHHHHHHHHHHcc-------ccccCCCcccC-----CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------
Q 023354          153 --EDISINLGPLEELS-------NLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------  209 (283)
Q Consensus       153 --~~~~~~~~~l~~l~-------~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------  209 (283)
                        ...+.+.++++.+.       +..+++..+.+     ||||+||++|||+++ +|.|+++| ||++.|...       
T Consensus       542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~  621 (1466)
T PTZ00265        542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT  621 (1466)
T ss_pred             ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence              00012233333322       23345555544     999999999999998 58888888 999865321       


Q ss_pred             ---h---cCCc----------ccccCEEEEEcCC
Q 023354          210 ---K---GGPG----------ITQADLLVINKTD  227 (283)
Q Consensus       210 ---~---~~~~----------i~~ad~ivi~K~g  227 (283)
                         .   .+.+          ++.||+|++++.|
T Consensus       622 L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g  655 (1466)
T PTZ00265        622 INNLKGNENRITIIIAHRLSTIRYANTIFVLSNR  655 (1466)
T ss_pred             HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence               1   1121          3789999999885

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.83  E-value=1.2e-20  Score=165.49  Aligned_cols=143  Identities=19%  Similarity=0.145  Sum_probs=111.4

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~  147 (283)
                      .++++++|..+ |++++|+|.+|||||||-++|+|+++|+ |+|.+.+.++.....                        
T Consensus        27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~------------------------   82 (268)
T COG4608          27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSK------------------------   82 (268)
T ss_pred             EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcch------------------------
Confidence            57899999855 9999999999999999999999999998 999999988654331                        


Q ss_pred             CCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc-------------hhh
Q 023354          148 HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI-------------PRK  210 (283)
Q Consensus       148 ~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l-------------~~~  210 (283)
                          .+..+.+.+.|+.+++.. .+++..-| ||||+||+.|||||+ +|.+++.| |++..|.             +.+
T Consensus        83 ----~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~  158 (268)
T COG4608          83 ----EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE  158 (268)
T ss_pred             ----hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence                112234455666665443 45666666 999999999999998 79888888 8887543             223


Q ss_pred             cCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          211 GGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       211 ~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .+.++           .+||+|++|..|++++.|+..+++.
T Consensus       159 ~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~  199 (268)
T COG4608         159 LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS  199 (268)
T ss_pred             hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence            22221           6799999999999999998888775

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.83  E-value=5.7e-21  Score=169.46  Aligned_cols=168  Identities=14%  Similarity=0.106  Sum_probs=114.7

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      ...++...|..  ...+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+           ...++|+
T Consensus         6 ~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v   72 (251)
T PRK09544          6 SLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYV   72 (251)
T ss_pred             EEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEe
Confidence            33444444532  34788899985 59999999999999999999999999987 9987653           1358888


Q ss_pred             CCchHHH-------HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          134 PEERIRA-------VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       134 ~q~~~~~-------i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                      +|++..+       ..........   ....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++| |++
T Consensus        73 ~q~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~  149 (251)
T PRK09544         73 PQKLYLDTTLPLTVNRFLRLRPGT---KKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ  149 (251)
T ss_pred             ccccccccccChhHHHHHhccccc---cHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            8875211       0110000000   012344567777666666666666 999999999999998 58888888 999


Q ss_pred             CCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          204 GDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       204 g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +.|...             +.+.++           ..||++++++. ++...|+..+...
T Consensus       150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~  209 (251)
T PRK09544        150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL  209 (251)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence            875321             112221           67999999974 6777777766554

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.83  E-value=3.2e-20  Score=163.89  Aligned_cols=176  Identities=13%  Similarity=0.024  Sum_probs=116.3

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHHH-Hhcccc
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL-MRNGAL  133 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~~-~~ig~v  133 (283)
                      ++.+.|..  .+.+++++|.. +|++++|+|+||||||||+++|+|++  +|+ |+|.+.+.++...++...+ ..++|+
T Consensus         6 nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~   83 (248)
T PRK09580          6 DLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMA   83 (248)
T ss_pred             EEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEE
Confidence            34444442  35788999985 59999999999999999999999995  576 9999998887655554443 469999


Q ss_pred             CCchHH--------HHHhCCCC---CC--C-hH-HH-HHHHHHHHHHcccc-ccCCCccc-C-CchHHHHHHHHHHhc-C
Q 023354          134 PEERIR--------AVETGGCP---HA--A-IR-ED-ISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       134 ~q~~~~--------~i~~~g~~---~~--~-~~-~~-~~~~~~~l~~l~~~-~~~d~~i~-e-SgGq~q~~~ia~al~-~  193 (283)
                      +|++..        +..+....   ..  . .. .. ...+.+.++.+... ...+..+. + |+||+||++||++++ +
T Consensus        84 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~  163 (248)
T PRK09580         84 FQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE  163 (248)
T ss_pred             ecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcC
Confidence            988531        11110000   00  0 00 01 11233455555543 23444443 4 999999999999998 4


Q ss_pred             CcEEEEe-CCCCCCchh------------hcCCcc-----------cc-cCEEEEEcCCcccccCChH
Q 023354          194 YIIYIID-VSGGDKIPR------------KGGPGI-----------TQ-ADLLVINKTDLASAIGADL  236 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~------------~~~~~i-----------~~-ad~ivi~K~g~i~~~g~~~  236 (283)
                      |.++++| |+++.|...            +.+.++           .. ||++++++.|++...|+..
T Consensus       164 p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~  231 (248)
T PRK09580        164 PELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT  231 (248)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence            8888888 999865321            111221           33 8999999999998877665

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2e-20  Score=167.04  Aligned_cols=185  Identities=15%  Similarity=0.066  Sum_probs=123.0

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC-----C-CcEEEEeecCC----CC
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD-----K-YSLAAVTNDIF----TK  121 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~-----~-g~i~i~~~d~~----~~  121 (283)
                      +.+...+..+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|     + |+|.+.+.++.    ..
T Consensus        15 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~   92 (265)
T PRK14252         15 QKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV   92 (265)
T ss_pred             ceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence            45666777777653  35889999985 5999999999999999999999999874     4 89998876653    12


Q ss_pred             CHHHHHHhccccCCchH-------HHHHhCCC-CCCChHHHH-HHHHHHHHHccc----cccCCCcccC-CchHHHHHHH
Q 023354          122 EDGEFLMRNGALPEERI-------RAVETGGC-PHAAIREDI-SINLGPLEELSN----LFKADLLLCE-SGGDNLAANF  187 (283)
Q Consensus       122 ~~~~~~~~ig~v~q~~~-------~~i~~~g~-~~~~~~~~~-~~~~~~l~~l~~----~~~~d~~i~e-SgGq~q~~~i  187 (283)
                      ....+++.++|++|++.       +.+.++.. ......... ..+.+.++.+..    ....+..+.+ |+||+||+.|
T Consensus        93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  172 (265)
T PRK14252         93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI  172 (265)
T ss_pred             CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence            23455677999999753       11111100 000001111 122334444432    1233444555 9999999999


Q ss_pred             HHHhc-CCcEEEEe-CCCCCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          188 SRELA-DYIIYIID-VSGGDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       188 a~al~-~~~l~llD-pt~g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      |++++ +|.++++| |+++.|....           ...+           ..+||++++++.|++.+.|+..+.+
T Consensus       173 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  248 (265)
T PRK14252        173 ARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF  248 (265)
T ss_pred             HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99998 58888888 9998753211           0111           1579999999999999888776554

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.83  E-value=2.5e-20  Score=157.49  Aligned_cols=118  Identities=25%  Similarity=0.316  Sum_probs=87.8

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHHHhccccCCchHHHHHhCCCC
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCP  147 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~i~~~g~~  147 (283)
                      .+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....+ ..+++.++|++|++...   ...+
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~---~~~~   91 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKRE---GLVL   91 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccC---cccC
Confidence            678888884 59999999999999999999999999987 999999988776553 33456799999974200   0112


Q ss_pred             CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                      ..+..+.+....    .            -|+||+||+++|++++ +|.++++| |+++.|.
T Consensus        92 ~~t~~e~l~~~~----~------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~  137 (182)
T cd03215          92 DLSVAENIALSS----L------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDV  137 (182)
T ss_pred             CCcHHHHHHHHh----h------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH
Confidence            223333321100    0            3999999999999998 58888887 9998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.83  E-value=2e-20  Score=156.75  Aligned_cols=111  Identities=25%  Similarity=0.348  Sum_probs=87.0

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~  147 (283)
                      +.+++++|.. +|++++|+|+||||||||+++|+|+++|. |+|.+.+.++.... ..+++.++|++|++..      .+
T Consensus        14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~------~~   86 (173)
T cd03230          14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSL------YE   86 (173)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCcc------cc
Confidence            4788999984 59999999999999999999999999887 99999888775443 4556789999997421      11


Q ss_pred             CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                      ..+..+.+.                    -|+||+||+.+|++++ +|.++++| |+++.|.
T Consensus        87 ~~tv~~~~~--------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~  128 (173)
T cd03230          87 NLTVRENLK--------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP  128 (173)
T ss_pred             CCcHHHHhh--------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence            123222221                    3999999999999998 58888887 9998764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.83  E-value=2.3e-20  Score=159.99  Aligned_cols=146  Identities=16%  Similarity=0.112  Sum_probs=105.4

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHH-HHhccccCCchHHHHHhC
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEF-LMRNGALPEERIRAVETG  144 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~-~~~ig~v~q~~~~~i~~~  144 (283)
                      ..+++++|.. +|++++|+|+||||||||+++|+|+.  .|+ |+|.+++.++........ +..++|++|++..+    
T Consensus        14 ~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~----   89 (200)
T cd03217          14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEI----   89 (200)
T ss_pred             EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhc----
Confidence            5788999985 59999999999999999999999994  676 999999998876655444 34599999985321    


Q ss_pred             CCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------------
Q 023354          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------  209 (283)
Q Consensus       145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------  209 (283)
                        +.....+       .+         +....+ |+||+||+.+|++++ +|.++++| |+++.|...            
T Consensus        90 --~~~~~~~-------~l---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~  151 (200)
T cd03217          90 --PGVKNAD-------FL---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR  151 (200)
T ss_pred             --cCccHHH-------HH---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence              1111111       11         111122 999999999999999 58888887 999865321            


Q ss_pred             hcCCc----------c-c-ccCEEEEEcCCcccccCChHHH
Q 023354          210 KGGPG----------I-T-QADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       210 ~~~~~----------i-~-~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      +.+.+          + . +||++++++.|++.+.+ +.+.
T Consensus       152 ~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~  191 (200)
T cd03217         152 EEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL  191 (200)
T ss_pred             HCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence            11222          1 3 69999999999998877 4343

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.83  E-value=2e-20  Score=163.13  Aligned_cols=159  Identities=18%  Similarity=0.048  Sum_probs=105.6

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHhCC
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGG  145 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~~g  145 (283)
                      .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.+....     ....++.+.... +.+..+.
T Consensus        35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~~~~~~tv~enl~~~~  109 (224)
T cd03220          35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGGFNPELTGRENIYLNG  109 (224)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccccCCCCCcHHHHHHHHH
Confidence            45889999985 59999999999999999999999999987 9999887764311     112333333222 1222111


Q ss_pred             CCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------------
Q 023354          146 CPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------------  209 (283)
Q Consensus       146 ~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------------  209 (283)
                      ... ....+......+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|...            
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~  189 (224)
T cd03220         110 RLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL  189 (224)
T ss_pred             HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            000 11111122344556666666666777777 999999999999998 58888887 999876421            


Q ss_pred             hcCCcc-----------cccCEEEEEcCCccccc
Q 023354          210 KGGPGI-----------TQADLLVINKTDLASAI  232 (283)
Q Consensus       210 ~~~~~i-----------~~ad~ivi~K~g~i~~~  232 (283)
                      +.+.++           .+||++++++.|++.+.
T Consensus       190 ~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~  223 (224)
T cd03220         190 KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD  223 (224)
T ss_pred             hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence            111121           56888888888887653

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.83  E-value=9.1e-21  Score=157.49  Aligned_cols=130  Identities=14%  Similarity=0.130  Sum_probs=97.8

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhccccCC
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPE  135 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q  135 (283)
                      ++...|..  .+.+.+++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+ +++.++|++|
T Consensus         5 ~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q   82 (163)
T cd03216           5 GITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ   82 (163)
T ss_pred             EEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence            33444533  25788889985 49999999999999999999999999987 99999988876554433 3456888776


Q ss_pred             chHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh---
Q 023354          136 ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRK---  210 (283)
Q Consensus       136 ~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~---  210 (283)
                                                               -|+||+||+++|++++ +|.++++| |+++.|....   
T Consensus        83 -----------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l  121 (163)
T cd03216          83 -----------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERL  121 (163)
T ss_pred             -----------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH
Confidence                                                     2999999999999998 58888887 9998763211   


Q ss_pred             ---------cCCcc-----------cccCEEEEEcCCcccc
Q 023354          211 ---------GGPGI-----------TQADLLVINKTDLASA  231 (283)
Q Consensus       211 ---------~~~~i-----------~~ad~ivi~K~g~i~~  231 (283)
                               .+.++           ..||++++++.|++.+
T Consensus       122 ~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~  162 (163)
T cd03216         122 FKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG  162 (163)
T ss_pred             HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence                     11111           4678888888777643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.83  E-value=2.8e-20  Score=164.60  Aligned_cols=171  Identities=15%  Similarity=0.086  Sum_probs=116.2

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHHHHHHhccccCCchHH
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGEFLMRNGALPEERIR  139 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~~~~~~ig~v~q~~~~  139 (283)
                      ...+.+++|.. +|++++|+|+||||||||+++|+|++.     |+ |+|.+++.++...  ....+++.++|+||++..
T Consensus        16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   95 (250)
T PRK14266         16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP   95 (250)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence            35788999985 599999999999999999999999864     25 9999999877532  234566789999998531


Q ss_pred             -------HHHhCCCCC-CChHHHH-HHHHHHHHHcccc----ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          140 -------AVETGGCPH-AAIREDI-SINLGPLEELSNL----FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       140 -------~i~~~g~~~-~~~~~~~-~~~~~~l~~l~~~----~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                             .+..+.... ....+.. ..+.+.++.++..    ...+..+.+ |+||+||++||++++ +|.++++| |++
T Consensus        96 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~  175 (250)
T PRK14266         96 FPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCS  175 (250)
T ss_pred             CcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence                   111111000 0111111 2334455554431    223555555 999999999999998 58888887 999


Q ss_pred             CCCchhh-----------cCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          204 GDKIPRK-----------GGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       204 g~~l~~~-----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +.|....           .+.+           ...|+++++++.|.+.+.|+..+.+
T Consensus       176 gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14266        176 ALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF  233 (250)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence            8764211           1112           1678999999999998888776654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.83  E-value=4.3e-20  Score=158.41  Aligned_cols=133  Identities=14%  Similarity=0.039  Sum_probs=98.8

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (283)
                      ..+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++... ...+++.++|++|++.        +
T Consensus        14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~e   92 (201)
T cd03231          14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAPGIKTTLSVLE   92 (201)
T ss_pred             eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEeccccccCCCcCHHH
Confidence            4688899984 59999999999999999999999999987 9999988876543 2356678999998642        1


Q ss_pred             HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      .+.+.. ...    ....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus        93 ~l~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~  159 (201)
T cd03231          93 NLRFWH-ADH----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA  159 (201)
T ss_pred             HHHhhc-ccc----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence            111111 100    112344566777666555666666 999999999999999 58888887 99998754

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.83  E-value=3.3e-20  Score=158.95  Aligned_cols=134  Identities=12%  Similarity=-0.009  Sum_probs=98.8

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (283)
                      ..+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.. ....+++.++|++|++.        .
T Consensus        15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~~   93 (200)
T PRK13540         15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSGINPYLTLRE   93 (200)
T ss_pred             eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccccCcCCCHHH
Confidence            5788999985 59999999999999999999999999987 999998877653 23455678999998642        1


Q ss_pred             HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      .+.++.... .   ....+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus        94 ~~~~~~~~~-~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~  161 (200)
T PRK13540         94 NCLYDIHFS-P---GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL  161 (200)
T ss_pred             HHHHHHhcC-c---chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence            111110000 0   112344566666665555666666 999999999999998 58888888 99997754

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.83  E-value=7.3e-20  Score=176.97  Aligned_cols=177  Identities=16%  Similarity=0.136  Sum_probs=121.9

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig  131 (283)
                      +...+.+..|    ...+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+... +++.++
T Consensus       251 i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~  326 (491)
T PRK10982        251 LEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA  326 (491)
T ss_pred             EEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence            4445555442    247888898855 9999999999999999999999999987 99999888876544433 345699


Q ss_pred             ccCCchHH--------H--------HHhCCCCCC--ChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHh
Q 023354          132 ALPEERIR--------A--------VETGGCPHA--AIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       132 ~v~q~~~~--------~--------i~~~g~~~~--~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al  191 (283)
                      |++|++..        .        +........  ........+.+.++.+... ...+..+.+ ||||+||+.||+++
T Consensus       327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al  406 (491)
T PRK10982        327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL  406 (491)
T ss_pred             EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence            99987420        0        000000000  1111122445567777664 346777777 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh------------cCCc-----------ccccCEEEEEcCCcccccCCh
Q 023354          192 A-DYIIYIID-VSGGDKIPRK------------GGPG-----------ITQADLLVINKTDLASAIGAD  235 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~------------~~~~-----------i~~ad~ivi~K~g~i~~~g~~  235 (283)
                      + +|.|+|+| ||++.|....            .+.+           ..+||++++++.|++...++.
T Consensus       407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~  475 (491)
T PRK10982        407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT  475 (491)
T ss_pred             hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence            8 48888888 9999764211            1222           168999999999998865544

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.83  E-value=6.5e-20  Score=162.40  Aligned_cols=180  Identities=14%  Similarity=0.017  Sum_probs=120.3

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc--ccCC-CcEEEEeecCCCCCHHHHHH-h
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFLM-R  129 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~--~~~~-g~i~i~~~d~~~~~~~~~~~-~  129 (283)
                      ....++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+  ++|+ |+|.+.+.++.........+ .
T Consensus         8 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   85 (252)
T CHL00131          8 LEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG   85 (252)
T ss_pred             EEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence            444455555542  35788999984 5999999999999999999999997  4676 99999988876554433333 4


Q ss_pred             ccccCCchH--------HHHHhCCCC--------CCChHHHHHHHHHHHHHcccc-ccCCCccc--CCchHHHHHHHHHH
Q 023354          130 NGALPEERI--------RAVETGGCP--------HAAIREDISINLGPLEELSNL-FKADLLLC--ESGGDNLAANFSRE  190 (283)
Q Consensus       130 ig~v~q~~~--------~~i~~~g~~--------~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~--eSgGq~q~~~ia~a  190 (283)
                      +++++|++.        ..+......        .....+....+.+.++.++.. ...+..+.  -|+||+||+.+|++
T Consensus        86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a  165 (252)
T CHL00131         86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQM  165 (252)
T ss_pred             EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHH
Confidence            778888742        111111000        000011112344567776654 24455554  29999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchh------------hcCCcc-----------cc-cCEEEEEcCCcccccCChH
Q 023354          191 LA-DYIIYIID-VSGGDKIPR------------KGGPGI-----------TQ-ADLLVINKTDLASAIGADL  236 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~------------~~~~~i-----------~~-ad~ivi~K~g~i~~~g~~~  236 (283)
                      ++ +|.|+++| |+++.|...            +.+.++           .. ||++++++.|++.+.|++.
T Consensus       166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~  237 (252)
T CHL00131        166 ALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE  237 (252)
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence            98 58888888 999865321            111221           34 8999999999999887665

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.83  E-value=6.3e-21  Score=153.19  Aligned_cols=126  Identities=23%  Similarity=0.251  Sum_probs=94.7

Q ss_pred             ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354           72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA  149 (283)
Q Consensus        72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~  149 (283)
                      |++++|. .+|++++|+|+||||||||+++|+|.++|. |.|.+.+.++.......+++.++|++|+...+..      .
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~   74 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPG------L   74 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTT------S
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccc------c
Confidence            3566776 459999999999999999999999999987 9999999888876667788899999998432211      1


Q ss_pred             ChHH--HHHHHHHHHHHccccccCCCcc----cC-CchHHHHHHHHHHhcC-CcEEEEe-CCC
Q 023354          150 AIRE--DISINLGPLEELSNLFKADLLL----CE-SGGDNLAANFSRELAD-YIIYIID-VSG  203 (283)
Q Consensus       150 ~~~~--~~~~~~~~l~~l~~~~~~d~~i----~e-SgGq~q~~~ia~al~~-~~l~llD-pt~  203 (283)
                      ++.+  ....+.+.++.+......+..+    .+ |+||+||+.||++++. |.++++| |++
T Consensus        75 tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   75 TVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             BHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            1111  1124455666666655555555    55 9999999999999984 7787777 874

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=1.6e-20  Score=153.21  Aligned_cols=146  Identities=19%  Similarity=0.203  Sum_probs=111.4

Q ss_pred             CCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH
Q 023354           63 GYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA  140 (283)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~  140 (283)
                      +|.....+.++.++|.-. |++++|+||+|||||||+|+++.++.|+ |.+.+-+.++.+..+..+|..++|+.|.+..+
T Consensus        10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf   89 (223)
T COG4619          10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF   89 (223)
T ss_pred             HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence            455566678899999854 9999999999999999999999999998 99999999999999999999999999887422


Q ss_pred             HHh----CCCCCC--ChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          141 VET----GGCPHA--AIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       141 i~~----~g~~~~--~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      -++    --+|+.  ..+.+.......|..+.+.. .++..+.+ |||++||++++|.|. -|.|+|+| +|+.+|..
T Consensus        90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~  167 (223)
T COG4619          90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES  167 (223)
T ss_pred             ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChh
Confidence            111    111211  01112234456677776654 35666666 999999999999997 48888888 88876643

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.82  E-value=3.2e-20  Score=155.25  Aligned_cols=111  Identities=22%  Similarity=0.281  Sum_probs=87.8

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~  147 (283)
                      ..+.+++|.. +|++++|+||||||||||+++|+|+++|. |++.+.+.++.......+++.++|++|++..   +   +
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~---~---~   89 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFL---F---S   89 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchh---c---c
Confidence            5788889985 59999999999999999999999999987 9999988877655555667789999997521   1   1


Q ss_pred             CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                       .+..++       +              -|+||+||+.+|++++ +|.++++| |+++.|..
T Consensus        90 -~t~~e~-------l--------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~  130 (171)
T cd03228          90 -GTIREN-------I--------------LSGGQRQRIAIARALLRDPPILILDEATSALDPE  130 (171)
T ss_pred             -chHHHH-------h--------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence             111111       1              3999999999999998 58888887 99997643

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.82  E-value=1.3e-20  Score=161.21  Aligned_cols=135  Identities=16%  Similarity=0.072  Sum_probs=98.7

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH--------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR--------  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------  139 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.... ..+++.++|++|....        
T Consensus        14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~   92 (198)
T TIGR01189        14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPGLKPELSALE   92 (198)
T ss_pred             EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcccccCCcHHH
Confidence            4788899985 59999999999999999999999999987 99999888765443 3455679999986421        


Q ss_pred             HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      .+.+.......   ....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus        93 ~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~  161 (198)
T TIGR01189        93 NLHFWAAIHGG---AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKA  161 (198)
T ss_pred             HHHHHHHHcCC---cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence            11111000000   011344566776666556666666 999999999999998 58888888 99998754

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.82  E-value=9.8e-21  Score=159.39  Aligned_cols=115  Identities=22%  Similarity=0.248  Sum_probs=88.0

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC--HHHHHHhccccCCchHHHHHhC
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE--DGEFLMRNGALPEERIRAVETG  144 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~--~~~~~~~ig~v~q~~~~~i~~~  144 (283)
                      .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+  ...+++.++|++|++..     
T Consensus        13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~-----   87 (178)
T cd03229          13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFAL-----   87 (178)
T ss_pred             eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCcc-----
Confidence            35788899984 59999999999999999999999999987 99999998876544  44566789999987521     


Q ss_pred             CCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                       .+..+..+.+.       .   .        -|+||+||+.+|++++ +|.++++| |+++.|.
T Consensus        88 -~~~~t~~~~l~-------~---~--------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~  133 (178)
T cd03229          88 -FPHLTVLENIA-------L---G--------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP  133 (178)
T ss_pred             -CCCCCHHHhee-------e---c--------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence             11112222110       0   0        3999999999999998 48888887 9999764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.82  E-value=4.1e-20  Score=168.44  Aligned_cols=183  Identities=15%  Similarity=0.066  Sum_probs=121.6

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhccc-----CC-CcEEEEeecCCCC--CHHH
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLR-----DK-YSLAAVTNDIFTK--EDGE  125 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~-----~~-g~i~i~~~d~~~~--~~~~  125 (283)
                      +...++.+.|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++     |+ |+|.+.+.++...  ....
T Consensus        46 l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~  123 (305)
T PRK14264         46 LSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE  123 (305)
T ss_pred             EEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence            455566655543  35789999985 599999999999999999999999985     45 9999998877532  2345


Q ss_pred             HHHhccccCCchHH-------HHHhCCCCC-------------CC-hHHHHHHHHHHHHHcccc----ccCCCcccC-Cc
Q 023354          126 FLMRNGALPEERIR-------AVETGGCPH-------------AA-IREDISINLGPLEELSNL----FKADLLLCE-SG  179 (283)
Q Consensus       126 ~~~~ig~v~q~~~~-------~i~~~g~~~-------------~~-~~~~~~~~~~~l~~l~~~----~~~d~~i~e-Sg  179 (283)
                      +++.++|++|++..       .+.++....             .. .......+.+.++.+...    ...+..+.+ |+
T Consensus       124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  203 (305)
T PRK14264        124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG  203 (305)
T ss_pred             HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence            66789999998531       121111000             00 001112334455555432    223444555 99


Q ss_pred             hHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhh---------c--CCc-----------ccccCEE-EEEcCCcccccCC
Q 023354          180 GDNLAANFSRELA-DYIIYIID-VSGGDKIPRK---------G--GPG-----------ITQADLL-VINKTDLASAIGA  234 (283)
Q Consensus       180 Gq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~---------~--~~~-----------i~~ad~i-vi~K~g~i~~~g~  234 (283)
                      ||+||+.||++|+ +|.|+|+| |+++.|....         .  ..+           ..+||++ ++++.|++.+.|+
T Consensus       204 Gq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~  283 (305)
T PRK14264        204 GQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDD  283 (305)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCC
Confidence            9999999999999 48888888 9999764211         0  111           1579986 5779999998887


Q ss_pred             hHHHH
Q 023354          235 DLAVM  239 (283)
Q Consensus       235 ~~e~~  239 (283)
                      ..+.+
T Consensus       284 ~~~~~  288 (305)
T PRK14264        284 TDKIF  288 (305)
T ss_pred             HHHHH
Confidence            66554

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.82  E-value=7.9e-20  Score=181.16  Aligned_cols=170  Identities=18%  Similarity=0.122  Sum_probs=125.2

Q ss_pred             CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHHHhccccCCchH----
Q 023354           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (283)
Q Consensus        68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (283)
                      .+..++++++..+ |+.++|+|||||||||||++|+|..++    +|+|.+++.++.   ...+++.+||++|++.    
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~  113 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT  113 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence            3467899999855 999999999999999999999998876    388998887653   3456778999999863    


Q ss_pred             ----HHHHhCCC---CC-CChHHHHHHHHHHHHHccccccCCCccc------C-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          139 ----RAVETGGC---PH-AAIREDISINLGPLEELSNLFKADLLLC------E-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       139 ----~~i~~~g~---~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~------e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                          +.+.++..   +. ....+....+.+.++.+++.+..+..+.      . ||||+||+.||++++ +|.++++| |
T Consensus       114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP  193 (617)
T TIGR00955       114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP  193 (617)
T ss_pred             CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence                22222211   11 1112333356678888887777777775      2 999999999999998 57777777 9


Q ss_pred             CCCCCchh------------hcCCc------------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          202 SGGDKIPR------------KGGPG------------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       202 t~g~~l~~------------~~~~~------------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++|.|...            +.+.+            +..+|++++++.|++++.|+..+...
T Consensus       194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~  256 (617)
T TIGR00955       194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP  256 (617)
T ss_pred             CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence            99965321            11111            36799999999999999998876643

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.82  E-value=4.3e-20  Score=158.73  Aligned_cols=136  Identities=18%  Similarity=0.090  Sum_probs=99.5

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (283)
                      ..+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++.... ...++.++|++|.+.        +
T Consensus        15 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~tv~e   93 (204)
T PRK13538         15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPGIKTELTALE   93 (204)
T ss_pred             EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEeCCccccCcCCcHHH
Confidence            4788999985 59999999999999999999999999988 99999888775432 345567899988642        1


Q ss_pred             HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      .+.+..... .. .....+.+.++.++.....+..+.+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus        94 ~l~~~~~~~-~~-~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~  163 (204)
T PRK13538         94 NLRFYQRLH-GP-GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ  163 (204)
T ss_pred             HHHHHHHhc-Cc-cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence            111111000 00 1122345567777766556666666 999999999999998 58888888 99997754

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.82  E-value=4.5e-20  Score=157.54  Aligned_cols=154  Identities=18%  Similarity=0.154  Sum_probs=106.3

Q ss_pred             ccccCCCCCCCC----CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHHH
Q 023354           56 HEPIYSPGYFSR----RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        56 ~~~~~~~~~~~~----~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~~  127 (283)
                      ...++++.|...    ..+.+++++|.. +|++++|+||||||||||+++|+|++  +|. |+|.+++.++..   ..++
T Consensus         5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~   81 (194)
T cd03213           5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFR   81 (194)
T ss_pred             EEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hhhh
Confidence            344555555442    246889999984 59999999999999999999999999  887 999999887653   2456


Q ss_pred             HhccccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354          128 MRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (283)
Q Consensus       128 ~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~  205 (283)
                      +.++|++|++.      -++..++.+.+...    ..+.         .-|+||+||+.+|++++ +|.++++| |+++.
T Consensus        82 ~~i~~~~q~~~------~~~~~t~~~~i~~~----~~~~---------~LS~G~~qrv~laral~~~p~illlDEP~~~L  142 (194)
T cd03213          82 KIIGYVPQDDI------LHPTLTVRETLMFA----AKLR---------GLSGGERKRVSIALELVSNPSLLFLDEPTSGL  142 (194)
T ss_pred             heEEEccCccc------CCCCCcHHHHHHHH----HHhc---------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence            77999998742      12222333333210    0010         22999999999999998 57788777 99986


Q ss_pred             Cchhh------------cCCc------------ccccCEEEEEcCCcccc
Q 023354          206 KIPRK------------GGPG------------ITQADLLVINKTDLASA  231 (283)
Q Consensus       206 ~l~~~------------~~~~------------i~~ad~ivi~K~g~i~~  231 (283)
                      |....            .+.+            ...||++++++.|++.+
T Consensus       143 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~  192 (194)
T cd03213         143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY  192 (194)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence            53211            0111            13478888888887654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.81  E-value=6.1e-20  Score=182.66  Aligned_cols=168  Identities=17%  Similarity=0.218  Sum_probs=120.0

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC---CCcEEEEeecCCCCCHHHHHHhccccCCchH------
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI------  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------  138 (283)
                      ...++++++..+ |++++|+|||||||||||++|+|.++|   +|+|.+++.++.    .+.++++|||+|+..      
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT  156 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT  156 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence            457899999854 999999999999999999999999876   499999887763    234467999999853      


Q ss_pred             --HHHHhCC---CCC-CChHHHHHHHHHHHHHccccccCCCcc-----cC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          139 --RAVETGG---CPH-AAIREDISINLGPLEELSNLFKADLLL-----CE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       139 --~~i~~~g---~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i-----~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                        +.+.+..   .+. ....+....+.+.++.+++.+..+..+     .+ ||||+||+.||++++ +|.|+++| |++|
T Consensus       157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg  236 (659)
T PLN03211        157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG  236 (659)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence              2222211   111 111222334566777777766555433     33 999999999999998 58888887 9999


Q ss_pred             CCchh------------hcCCc------------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          205 DKIPR------------KGGPG------------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       205 ~~l~~------------~~~~~------------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .|...            +.+.+            .+.+|++++++.|++.+.|+..+...
T Consensus       237 LD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~  296 (659)
T PLN03211        237 LDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA  296 (659)
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence            75321            11111            25689999999999999998766543

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.81  E-value=2.5e-19  Score=145.54  Aligned_cols=168  Identities=16%  Similarity=0.131  Sum_probs=119.9

Q ss_pred             CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC--CCC----HHHHHHhccccCCchH-
Q 023354           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKE----DGEFLMRNGALPEERI-  138 (283)
Q Consensus        68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~--~~~----~~~~~~~ig~v~q~~~-  138 (283)
                      ...++-+++|..+ |+.+.++||+|||||||++.|.=+.-|. |+..+.++.+.  +..    ..++|+++|+|||.-. 
T Consensus        14 ~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~l   93 (242)
T COG4161          14 AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL   93 (242)
T ss_pred             cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhcc
Confidence            3346778888754 9999999999999999999998877776 98888777653  222    2467889999999742 


Q ss_pred             ----HHHH-hCCCCCC----ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          139 ----RAVE-TGGCPHA----AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       139 ----~~i~-~~g~~~~----~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                          .+++ +--.|+.    ...+......+.|..+.+....|+...- ||||+||++|||+|+ .|.++++| ||...|
T Consensus        94 wphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaald  173 (242)
T COG4161          94 WPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD  173 (242)
T ss_pred             CchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccC
Confidence                1111 1111111    1223344667788888888888887766 999999999999998 58888888 888754


Q ss_pred             ch---------hh----cCCc----------ccccCEEEEEcCCcccccCCh
Q 023354          207 IP---------RK----GGPG----------ITQADLLVINKTDLASAIGAD  235 (283)
Q Consensus       207 l~---------~~----~~~~----------i~~ad~ivi~K~g~i~~~g~~  235 (283)
                      ..         ++    ...+          -..|.+|+.+..|.+++.|+.
T Consensus       174 peitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a  225 (242)
T COG4161         174 PEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA  225 (242)
T ss_pred             HHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence            21         11    1111          156889999999999998765

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.81  E-value=1.5e-19  Score=168.79  Aligned_cols=164  Identities=13%  Similarity=0.107  Sum_probs=123.2

Q ss_pred             CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-HHHhccccCCchH------
Q 023354           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-FLMRNGALPEERI------  138 (283)
Q Consensus        68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~~~~ig~v~q~~~------  138 (283)
                      .-.+.++++|..+ |++.+|+|.||||||||+++|.|+++|+ |+|.+++..+.-.++.+ ++..||+|+|.+.      
T Consensus        16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lT   95 (501)
T COG3845          16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLT   95 (501)
T ss_pred             CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccc
Confidence            3346788888855 9999999999999999999999999998 99999999988666654 4557999999864      


Q ss_pred             --HHHHhCCCCC----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-
Q 023354          139 --RAVETGGCPH----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-  208 (283)
Q Consensus       139 --~~i~~~g~~~----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-  208 (283)
                        +.+.++..+.    ...+....++.+..+++++.-.++..+.+ |.|++||+.|.++|. ++.++++| ||+-+..+ 
T Consensus        96 V~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E  175 (501)
T COG3845          96 VAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE  175 (501)
T ss_pred             hhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence              3344443321    12233333555666777777778888888 999999999999998 48888888 88753211 


Q ss_pred             -----------hhcCCc-----------ccccCEEEEEcCCcccc
Q 023354          209 -----------RKGGPG-----------ITQADLLVINKTDLASA  231 (283)
Q Consensus       209 -----------~~~~~~-----------i~~ad~ivi~K~g~i~~  231 (283)
                                 .+.+.+           .+.||++.+++.|+++.
T Consensus       176 ~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg  220 (501)
T COG3845         176 ADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG  220 (501)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence                       111222           37899999999998865

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.81  E-value=1.7e-19  Score=174.33  Aligned_cols=176  Identities=16%  Similarity=0.034  Sum_probs=120.2

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC--CCcEEEEeecCCC-CCHHHHHHh
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIFT-KEDGEFLMR  129 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~g~i~i~~~d~~~-~~~~~~~~~  129 (283)
                      .+...+....|..  ...+++++|.. +|++++|+||||||||||+++|+|++++  +|+|.+.+.++.. ......++.
T Consensus       260 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~  337 (490)
T PRK10938        260 RIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH  337 (490)
T ss_pred             eEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence            3455555555532  34788999985 5999999999999999999999998775  4999998876532 122345678


Q ss_pred             ccccCCchHHH---------HHhCC-CC----C-CChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc
Q 023354          130 NGALPEERIRA---------VETGG-CP----H-AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA  192 (283)
Q Consensus       130 ig~v~q~~~~~---------i~~~g-~~----~-~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~  192 (283)
                      +||++|++..+         +...+ ..    . .........+.+.++.++... ..+..+.+ |+||+||++||++++
T Consensus       338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  417 (490)
T PRK10938        338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV  417 (490)
T ss_pred             ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence            99999874211         11111 10    0 001112234556788887765 66777777 999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCch-------------hhcCCc----------c-c-ccCEEEEEcCCcccc
Q 023354          193 -DYIIYIID-VSGGDKIP-------------RKGGPG----------I-T-QADLLVINKTDLASA  231 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~-------------~~~~~~----------i-~-~ad~ivi~K~g~i~~  231 (283)
                       +|.++++| |+++.|..             .+...+          + . +||++++++.|++.+
T Consensus       418 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~  483 (490)
T PRK10938        418 KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR  483 (490)
T ss_pred             cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence             58888888 99997532             111121          1 3 478899998888765

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.81  E-value=1e-19  Score=158.42  Aligned_cols=139  Identities=18%  Similarity=0.170  Sum_probs=96.6

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee----cCCCCCHHH---H-HHhccccCCchHH
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDGE---F-LMRNGALPEERIR  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~----d~~~~~~~~---~-~~~ig~v~q~~~~  139 (283)
                      ..+.+++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.    ++...+...   + ++.++|++|++..
T Consensus        22 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~  101 (224)
T TIGR02324        22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV  101 (224)
T ss_pred             EEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence            5788999985 59999999999999999999999999987 99988742    443333332   2 3469999998631


Q ss_pred             --------HHHhCCC-CCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          140 --------AVETGGC-PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       140 --------~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                              .+..... ...........+.+.++.++.... .+..+.+ |+||+||+.+|++++ +|.++++| |+++.|
T Consensus       102 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD  181 (224)
T TIGR02324       102 IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD  181 (224)
T ss_pred             CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence                    1111100 011111112244556777766543 3556666 999999999999998 58888888 999977


Q ss_pred             ch
Q 023354          207 IP  208 (283)
Q Consensus       207 l~  208 (283)
                      ..
T Consensus       182 ~~  183 (224)
T TIGR02324       182 AA  183 (224)
T ss_pred             HH
Confidence            54

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.2e-19  Score=151.55  Aligned_cols=137  Identities=18%  Similarity=0.163  Sum_probs=102.9

Q ss_pred             CCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH---
Q 023354           64 YFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI---  138 (283)
Q Consensus        64 ~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~---  138 (283)
                      |.....+++.++++... |+.++++||+|||||||||.++|+..|. |+|.+++..+....     ..-|+|||+.-   
T Consensus        13 y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aergvVFQ~~~LlP   87 (259)
T COG4525          13 YEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGVVFQNEALLP   87 (259)
T ss_pred             cCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----ccceeEeccCccch
Confidence            44455678899999865 9999999999999999999999999998 99999998776432     13488888763   


Q ss_pred             -----HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354          139 -----RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (283)
Q Consensus       139 -----~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~  205 (283)
                           ..+.+|..... ...+..+.+.+.|..+++...-+..+++ ||||+||+.|||||+ +|.++++| |....
T Consensus        88 Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl  163 (259)
T COG4525          88 WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL  163 (259)
T ss_pred             hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence                 23333322111 1123334556677777777777888888 999999999999998 78888888 76653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.81  E-value=1.2e-19  Score=154.54  Aligned_cols=152  Identities=16%  Similarity=0.111  Sum_probs=103.2

Q ss_pred             cccCCCCCCCC--CCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhccc--CC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           57 EPIYSPGYFSR--RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        57 ~~~~~~~~~~~--~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~--~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+.++.|...  ..+.+++++|. .+|++++|+||||||||||+++|+|++.  |+ |++.+.+.++.    ..+++.+
T Consensus         6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i   81 (192)
T cd03232           6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRST   81 (192)
T ss_pred             EeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhce
Confidence            34445555432  23578899998 5599999999999999999999999863  55 99998887764    3456679


Q ss_pred             cccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          131 GALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       131 g~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      +|++|++.      -++..++.+.+.... .+.            .-|+||+||+.+|++++ +|.++++| |+++.|..
T Consensus        82 ~~~~q~~~------~~~~~tv~~~l~~~~-~~~------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~  142 (192)
T cd03232          82 GYVEQQDV------HSPNLTVREALRFSA-LLR------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ  142 (192)
T ss_pred             EEecccCc------cccCCcHHHHHHHHH-HHh------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH
Confidence            99998642      112223333332100 010            22999999999999998 48888877 99986532


Q ss_pred             hh------------cCCc------------ccccCEEEEEcC-Ccccc
Q 023354          209 RK------------GGPG------------ITQADLLVINKT-DLASA  231 (283)
Q Consensus       209 ~~------------~~~~------------i~~ad~ivi~K~-g~i~~  231 (283)
                      .+            .+.+            ...||++++++. |++.+
T Consensus       143 ~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~  190 (192)
T cd03232         143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY  190 (192)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence            11            0111            145788888877 77665

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.80  E-value=1.3e-19  Score=156.23  Aligned_cols=143  Identities=17%  Similarity=0.085  Sum_probs=99.9

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .++...|..  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++..  . .+++.++|++|
T Consensus         6 ~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~~~~~   80 (207)
T PRK13539          6 EDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACHYLGH   80 (207)
T ss_pred             EeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcEEecC
Confidence            334444432  34788999984 59999999999999999999999999887 999998876532  1 25667899987


Q ss_pred             chH--------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          136 ERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       136 ~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                      ...        +.+.+.......   ....+.+.++.++.....+..+.+ |+||+||+.+|++++ +|.++++| |+++
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  157 (207)
T PRK13539         81 RNAMKPALTVAENLEFWAAFLGG---EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA  157 (207)
T ss_pred             CCcCCCCCcHHHHHHHHHHhcCC---cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            532        111110000000   012245567777665555666666 999999999999998 58888887 9999


Q ss_pred             CCch
Q 023354          205 DKIP  208 (283)
Q Consensus       205 ~~l~  208 (283)
                      .|..
T Consensus       158 LD~~  161 (207)
T PRK13539        158 LDAA  161 (207)
T ss_pred             CCHH
Confidence            7754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.80  E-value=1.5e-19  Score=159.96  Aligned_cols=113  Identities=20%  Similarity=0.164  Sum_probs=80.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhCCCCCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGGCPHAA  150 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~g~~~~~  150 (283)
                      +|++++|+||||||||||+++|+|+++|+ |+|.+.+.            .++|++|+..        +.+.........
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~   91 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADYEGTVRDLLSSITKDFYT   91 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCCCCCHHHHHHHHhhhccc
Confidence            59999999999999999999999999987 99887653            4677776532        111110000000


Q ss_pred             hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          151 IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       151 ~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                         ......+.++.+......+..+.+ |+||+||++||++|+ +|.++++| |+++.|.
T Consensus        92 ---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~  148 (246)
T cd03237          92 ---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV  148 (246)
T ss_pred             ---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence               001123456666666566666666 999999999999998 48888888 9998764

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.80  E-value=1.7e-19  Score=152.61  Aligned_cols=162  Identities=15%  Similarity=0.094  Sum_probs=117.0

Q ss_pred             CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhC
Q 023354           67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG  144 (283)
Q Consensus        67 ~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~  144 (283)
                      ..+++++..++... |++|.|+|.||||||||+|.|+|.+.|+ |+|.+++.++...+..++...++-|+|+|.    .+
T Consensus        17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~----~g   92 (263)
T COG1101          17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL----AG   92 (263)
T ss_pred             hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh----hC
Confidence            34578899999865 9999999999999999999999999998 999999999999888888888899999873    23


Q ss_pred             CCCCCChHHHH---------------------HHHHHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEE
Q 023354          145 GCPHAAIREDI---------------------SINLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYII  199 (283)
Q Consensus       145 g~~~~~~~~~~---------------------~~~~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~ll  199 (283)
                      -|+..++.+++                     ....+.+..+  +.....+..+.- ||||+|.+.++.+.+. |.|+++
T Consensus        93 t~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLL  172 (263)
T COG1101          93 TAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL  172 (263)
T ss_pred             CcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence            33333332222                     1122233333  223344444444 9999999999999885 888888


Q ss_pred             e-CCCCCCch-------------hhcCC-----------cccccCEEEEEcCCccccc
Q 023354          200 D-VSGGDKIP-------------RKGGP-----------GITQADLLVINKTDLASAI  232 (283)
Q Consensus       200 D-pt~g~~l~-------------~~~~~-----------~i~~ad~ivi~K~g~i~~~  232 (283)
                      | -|...|..             .+.+.           .+.|-+|+|+++.|+|+.+
T Consensus       173 DEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD  230 (263)
T COG1101         173 DEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD  230 (263)
T ss_pred             cchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence            8 44444321             11111           1378899999999999763

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.80  E-value=3.2e-19  Score=159.33  Aligned_cols=168  Identities=13%  Similarity=0.006  Sum_probs=108.0

Q ss_pred             CCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHh
Q 023354           67 RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVET  143 (283)
Q Consensus        67 ~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~  143 (283)
                      ...+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.... .     ....++.++... +.+.+
T Consensus        35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~-~-----~~~~~~~~~~tv~enl~~  108 (264)
T PRK13546         35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSV-I-----AISAGLSGQLTGIENIEF  108 (264)
T ss_pred             CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeE-E-----ecccCCCCCCcHHHHHHH
Confidence            3345788899985 59999999999999999999999999987 99987764110 0     001122222111 11211


Q ss_pred             CC-CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----------
Q 023354          144 GG-CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----------  209 (283)
Q Consensus       144 ~g-~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----------  209 (283)
                      +. .......+....+...++.+......+..+.+ |+||+||+++|++++ +|.++++| |+++.|...          
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~  188 (264)
T PRK13546        109 KMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE  188 (264)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            10 00111111112233345555555555666666 999999999999998 58888888 999876421          


Q ss_pred             --hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          210 --KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       210 --~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                        +.+.++           ..||++++++.|.+...|+..+.+.
T Consensus       189 ~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  232 (264)
T PRK13546        189 FKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP  232 (264)
T ss_pred             HHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence              112221           5699999999999998887665544

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.80  E-value=1.2e-19  Score=180.86  Aligned_cols=185  Identities=15%  Similarity=0.095  Sum_probs=132.1

Q ss_pred             cccccCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----
Q 023354           55 SHEPIYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----  126 (283)
Q Consensus        55 ~~~~~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----  126 (283)
                      ..+.+.+..|....  ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |++.+++.++......++    
T Consensus         5 l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~   84 (648)
T PRK10535          5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLR   84 (648)
T ss_pred             EEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHH
Confidence            34455555565332  35788999984 59999999999999999999999999987 999999988877655443    


Q ss_pred             HHhccccCCchHH--------HHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          127 LMRNGALPEERIR--------AVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       127 ~~~ig~v~q~~~~--------~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      ++.++|++|++..        .+.+.... .....+....+.+.++.++.....+..+.+ |+||+||+.+||+++ +|.
T Consensus        85 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~  164 (648)
T PRK10535         85 REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQ  164 (648)
T ss_pred             hccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            4579999997631        11111100 011122233456677777776666777777 999999999999998 588


Q ss_pred             EEEEe-CCCCCCchh------------hcCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          196 IYIID-VSGGDKIPR------------KGGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       196 l~llD-pt~g~~l~~------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ++++| |+++.|...            +.+.+          +..||++++++.|++.+.|+..+..
T Consensus       165 lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        165 VILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV  231 (648)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence            88888 999865321            11111          2579999999999999988776543

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.80  E-value=2e-19  Score=159.81  Aligned_cols=145  Identities=17%  Similarity=0.092  Sum_probs=94.3

Q ss_pred             CCCCCCCCCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE-----------EEeecCCCCCHHHHH
Q 023354           60 YSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFL  127 (283)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~-----------i~~~d~~~~~~~~~~  127 (283)
                      +.+.|. ....++.++++..+|++++|+|||||||||||++|+|+++|+ |+|.           +.+.++.... .+.+
T Consensus         6 ~~~~y~-~~~~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~-~~~~   83 (255)
T cd03236           6 PVHRYG-PNSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF-TKLL   83 (255)
T ss_pred             cceeec-CcchhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhh-HHhh
Confidence            344453 223467777776789999999999999999999999999997 9985           4455543321 1222


Q ss_pred             H---hccccCCchHHH----HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354          128 M---RNGALPEERIRA----VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       128 ~---~ig~v~q~~~~~----i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l  198 (283)
                      +   .+++++|....+    ...-... ...........+.++.++.....+..+.+ |+||+||+.+|++++ +|.+++
T Consensus        84 ~~~~~i~~~~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ill  162 (255)
T cd03236          84 EGDVKVIVKPQYVDLIPKAVKGKVGEL-LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYF  162 (255)
T ss_pred             hcccceeeecchhccCchHHHHHHHHH-hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            1   356666643211    0000000 01111223445677777666555666666 999999999999998 588888


Q ss_pred             Ee-CCCCCCc
Q 023354          199 ID-VSGGDKI  207 (283)
Q Consensus       199 lD-pt~g~~l  207 (283)
                      +| |+++.|.
T Consensus       163 lDEPts~LD~  172 (255)
T cd03236         163 FDEPSSYLDI  172 (255)
T ss_pred             EECCCCCCCH
Confidence            88 9998754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.79  E-value=2.9e-19  Score=154.77  Aligned_cols=147  Identities=13%  Similarity=0.028  Sum_probs=103.1

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      ....+....|..  ...+++++|... |++++|+|+||||||||+++|+|+++|+ |+|.+.+.++...   ..++.++|
T Consensus        12 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~   86 (214)
T PRK13543         12 LAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY   86 (214)
T ss_pred             EEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence            445555555543  347889999854 9999999999999999999999999987 9999988776532   33456899


Q ss_pred             cCCchHH--------HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          133 LPEERIR--------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       133 v~q~~~~--------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                      ++|.+..        .+.+.......  .....+.+.++.+......+..+.+ |+||+||+++|++++ +|.++++| |
T Consensus        87 ~~q~~~~~~~~t~~e~l~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  164 (214)
T PRK13543         87 LGHLPGLKADLSTLENLHFLCGLHGR--RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP  164 (214)
T ss_pred             eecCcccccCCcHHHHHHHHHHhcCC--cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            9886421        11111000000  0111234556666666556776666 999999999999998 58888888 9


Q ss_pred             CCCCCch
Q 023354          202 SGGDKIP  208 (283)
Q Consensus       202 t~g~~l~  208 (283)
                      +++.|..
T Consensus       165 t~~LD~~  171 (214)
T PRK13543        165 YANLDLE  171 (214)
T ss_pred             cccCCHH
Confidence            9987654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=4.5e-19  Score=173.01  Aligned_cols=170  Identities=15%  Similarity=0.091  Sum_probs=116.6

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+++..|..  ...+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.           +.+||
T Consensus       320 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~  386 (530)
T PRK15064        320 LEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGY  386 (530)
T ss_pred             EEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEE
Confidence            444455555532  357888999855 9999999999999999999999999987 99886542           36888


Q ss_pred             cCCchHH-------HHH-hCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERIR-------AVE-TGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~~-------~i~-~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      ++|++..       ..+ +......  ......+.+.|+.++.. ...+..+.+ |+||+||+.||++++ +|.++|+| 
T Consensus       387 ~~q~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE  464 (530)
T PRK15064        387 YAQDHAYDFENDLTLFDWMSQWRQE--GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE  464 (530)
T ss_pred             EcccccccCCCCCcHHHHHHHhccC--CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            8886420       001 0000000  01112344567777653 455677777 999999999999998 58888888 


Q ss_pred             CCCCCCchhh---------cCCc-----------ccccCEEEEEcCCccc-ccCChHHHH
Q 023354          201 VSGGDKIPRK---------GGPG-----------ITQADLLVINKTDLAS-AIGADLAVM  239 (283)
Q Consensus       201 pt~g~~l~~~---------~~~~-----------i~~ad~ivi~K~g~i~-~~g~~~e~~  239 (283)
                      |+++.|....         ...+           ..+||++++++.|.++ ..|+..+.+
T Consensus       465 Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~  524 (530)
T PRK15064        465 PTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL  524 (530)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence            9999764321         1112           1579999999999987 667665554

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.79  E-value=1.3e-19  Score=176.72  Aligned_cols=168  Identities=16%  Similarity=0.088  Sum_probs=111.2

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      +.++.|..  .+.+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.           ..+||++|.
T Consensus         6 ~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~   72 (530)
T PRK15064          6 NITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQD   72 (530)
T ss_pred             EEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEecc
Confidence            44444432  35789999985 49999999999999999999999999987 99987642           246777775


Q ss_pred             hH--------HHHHhCC---------------CCCCC------h------------HHHHHHHHHHHHHcccccc-CCCc
Q 023354          137 RI--------RAVETGG---------------CPHAA------I------------REDISINLGPLEELSNLFK-ADLL  174 (283)
Q Consensus       137 ~~--------~~i~~~g---------------~~~~~------~------------~~~~~~~~~~l~~l~~~~~-~d~~  174 (283)
                      +.        +.+.++.               .+...      .            .+....+.+.|+.++.... .+..
T Consensus        73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  152 (530)
T PRK15064         73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL  152 (530)
T ss_pred             CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence            31        1111110               00000      0            0011234456677766432 2445


Q ss_pred             ccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCccc-
Q 023354          175 LCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLAS-  230 (283)
Q Consensus       175 i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~-  230 (283)
                      +.+ |+||+||++||++++ +|.++|+| |+++.|...         +.+.++           ..||+|++++.|++. 
T Consensus       153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~  232 (530)
T PRK15064        153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV  232 (530)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence            556 999999999999998 58888888 999876421         112221           679999999999984 


Q ss_pred             ccCChHHHH
Q 023354          231 AIGADLAVM  239 (283)
Q Consensus       231 ~~g~~~e~~  239 (283)
                      +.|+..+.+
T Consensus       233 ~~g~~~~~~  241 (530)
T PRK15064        233 YPGNYDEYM  241 (530)
T ss_pred             ecCCHHHHH
Confidence            667655443

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.79  E-value=2.8e-19  Score=148.94  Aligned_cols=107  Identities=21%  Similarity=0.198  Sum_probs=81.1

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCC
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~  146 (283)
                      ...+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.           +.++|++|++..       
T Consensus        14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q~~~~-------   75 (166)
T cd03223          14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQRPYL-------   75 (166)
T ss_pred             CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECCCCcc-------
Confidence            35788899984 59999999999999999999999999987 99987541           578999997531       


Q ss_pred             CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      ...+..+++..       .        ...+ |+||+||+.+||+++ +|.++++| |+++.|..
T Consensus        76 ~~~tv~~nl~~-------~--------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~  125 (166)
T cd03223          76 PLGTLREQLIY-------P--------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEE  125 (166)
T ss_pred             ccccHHHHhhc-------c--------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHH
Confidence            11233332210       0        1233 999999999999998 58888887 99987653

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.79  E-value=3.7e-19  Score=152.82  Aligned_cols=123  Identities=24%  Similarity=0.253  Sum_probs=83.0

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-------H
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-------A  140 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-------~  140 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+             .++|++|++..       .
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~en   85 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIREN   85 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHH
Confidence            5788999985 59999999999999999999999999987 9998876             57888887641       1


Q ss_pred             HHhCCCCCCChHHHHHHHHH------HHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          141 VETGGCPHAAIREDISINLG------PLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       141 i~~~g~~~~~~~~~~~~~~~------~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      +.+. ... . .+......+      .+..+  +.....+....+ |+||+||+++|++++ +|.++++| |+++.|..
T Consensus        86 l~~~-~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~  161 (204)
T cd03250          86 ILFG-KPF-D-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH  161 (204)
T ss_pred             hccC-CCc-C-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence            1111 111 1 111111111      11111  011112333334 999999999999999 48888888 99987643

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.6e-18  Score=148.15  Aligned_cols=171  Identities=18%  Similarity=0.099  Sum_probs=124.2

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcc--cCC-CcEEEEeecCCCCCHHHHHH-hccccCCchHH----
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFL--RDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERIR----  139 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~~----  139 (283)
                      +..|+++++..+ |++.+|+||||||||||.+.|+|.-  +.+ |+|.+.+.|+...++.++.+ .+..-+|.|.+    
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV   96 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV   96 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence            467889999865 9999999999999999999999964  456 99999999999988777655 47777898752    


Q ss_pred             ----HHHhCCCC--CC--ChHHHHHHHHHHHHHccccc-cCCCcccC--CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          140 ----AVETGGCP--HA--AIREDISINLGPLEELSNLF-KADLLLCE--SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       140 ----~i~~~g~~--~~--~~~~~~~~~~~~l~~l~~~~-~~d~~i~e--SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                          ++..+...  ..  -..+....+.+.++.+.... ..++.+.+  |||+++|..|+..++ .|.+.++| |-+|.|
T Consensus        97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD  176 (251)
T COG0396          97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD  176 (251)
T ss_pred             eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence                22211100  00  01222334555666666555 67888888  999999999998776 69999999 888976


Q ss_pred             chhh------------cCCc----------cc--ccCEEEEEcCCcccccCChHHHHh
Q 023354          207 IPRK------------GGPG----------IT--QADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       207 l~~~------------~~~~----------i~--~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +..-            .+..          +.  .+|.+-++..|+++..|.+ ++..
T Consensus       177 Idalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~  233 (251)
T COG0396         177 IDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE  233 (251)
T ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence            5321            0111          12  3699999999999999988 5443

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.78  E-value=7.9e-19  Score=168.13  Aligned_cols=176  Identities=14%  Similarity=-0.003  Sum_probs=115.6

Q ss_pred             cCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           59 IYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        59 ~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      +..+.|.... .+.+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.+.+...      ....++.++
T Consensus        26 nL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i------~~~~~l~~~   99 (549)
T PRK13545         26 DLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALI------AISSGLNGQ   99 (549)
T ss_pred             EEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeE------EeccccCCC
Confidence            3444444432 35789999985 59999999999999999999999999987 999887754210      001122222


Q ss_pred             chH-HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-
Q 023354          136 ERI-RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-  209 (283)
Q Consensus       136 ~~~-~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-  209 (283)
                      ... +.+.+... ......+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++|+| |+++.|... 
T Consensus       100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr  179 (549)
T PRK13545        100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT  179 (549)
T ss_pred             CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence            221 22222111 1111112222344566767666666676766 999999999999998 58888888 999876421 


Q ss_pred             -----------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          210 -----------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       210 -----------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                 +.+.++           .+||++++++.|++...|++.+++.
T Consensus       180 ~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~  232 (549)
T PRK13545        180 KKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD  232 (549)
T ss_pred             HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence                       111121           5799999999999988887766554

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.78  E-value=9.8e-19  Score=157.56  Aligned_cols=176  Identities=15%  Similarity=0.106  Sum_probs=110.8

Q ss_pred             ccCCCCCCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC
Q 023354           45 YHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE  122 (283)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~  122 (283)
                      +..+.+..+.+...+.+..    ....+++++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+       
T Consensus        30 ~~~~~~~~~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------   98 (282)
T cd03291          30 DRKHSSDDNNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------   98 (282)
T ss_pred             ccccCCCCCeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------
Confidence            3333444455555665543    235888999985 59999999999999999999999999987 9988754       


Q ss_pred             HHHHHHhccccCCchHH-------HHHhCCCCCCChHHHHHHHH------HHHHHccccc--cCCCcccC-CchHHHHHH
Q 023354          123 DGEFLMRNGALPEERIR-------AVETGGCPHAAIREDISINL------GPLEELSNLF--KADLLLCE-SGGDNLAAN  186 (283)
Q Consensus       123 ~~~~~~~ig~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~------~~l~~l~~~~--~~d~~i~e-SgGq~q~~~  186 (283)
                            .++|++|++..       .+.++ +...  ........      ..+..+....  ..+....+ |+||+||+.
T Consensus        99 ------~i~yv~q~~~l~~~tv~enl~~~-~~~~--~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~  169 (282)
T cd03291          99 ------RISFSSQFSWIMPGTIKENIIFG-VSYD--EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS  169 (282)
T ss_pred             ------EEEEEeCcccccccCHHHHhhcc-cccC--HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence                  26777776531       11111 1110  00111111      1111111000  11112234 999999999


Q ss_pred             HHHHhc-CCcEEEEe-CCCCCCchh----------h--cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          187 FSRELA-DYIIYIID-VSGGDKIPR----------K--GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       187 ia~al~-~~~l~llD-pt~g~~l~~----------~--~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|++++ +|.++++| |+++.|...          .  .+.+          +..||++++++.|.+...|+..+...
T Consensus       170 lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  247 (282)
T cd03291         170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS  247 (282)
T ss_pred             HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            999998 58888888 999865321          0  1111          25799999999999988887766543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.78  E-value=4e-19  Score=174.25  Aligned_cols=170  Identities=15%  Similarity=0.081  Sum_probs=113.0

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+.+..|.. ....+++++|... |++++|+|||||||||||++|+|+++|+ |+|.+...           ..+||
T Consensus         7 l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i~~   74 (556)
T PRK11819          7 YTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKVGY   74 (556)
T ss_pred             EEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence            344455555542 2468899999855 9999999999999999999999999987 99887431           35888


Q ss_pred             cCCchH--------HHHHhCCCC---------------CCC---hH-------------------HHHHHHHHHHHHccc
Q 023354          133 LPEERI--------RAVETGGCP---------------HAA---IR-------------------EDISINLGPLEELSN  167 (283)
Q Consensus       133 v~q~~~--------~~i~~~g~~---------------~~~---~~-------------------~~~~~~~~~l~~l~~  167 (283)
                      ++|++.        +.+.++...               ...   ..                   +....+.+.++.++.
T Consensus        75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl  154 (556)
T PRK11819         75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC  154 (556)
T ss_pred             EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence            888742        112111100               000   00                   001123344555555


Q ss_pred             cccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEE
Q 023354          168 LFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVIN  224 (283)
Q Consensus       168 ~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~  224 (283)
                      . ..+..+.+ ||||+||+.||++++ +|.++|+| |+++.|...         +...++           ..||+|+++
T Consensus       155 ~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l  233 (556)
T PRK11819        155 P-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILEL  233 (556)
T ss_pred             C-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEE
Confidence            3 25666666 999999999999998 58888888 999876432         111121           579999999


Q ss_pred             cCCccc-ccCChHH
Q 023354          225 KTDLAS-AIGADLA  237 (283)
Q Consensus       225 K~g~i~-~~g~~~e  237 (283)
                      +.|.+. +.|+..+
T Consensus       234 ~~g~i~~~~g~~~~  247 (556)
T PRK11819        234 DRGRGIPWEGNYSS  247 (556)
T ss_pred             eCCEEEEecCCHHH
Confidence            999975 5565544

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.78  E-value=9.4e-19  Score=151.77  Aligned_cols=140  Identities=16%  Similarity=0.074  Sum_probs=93.2

Q ss_pred             CCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHHHHhccccCC
Q 023354           62 PGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPE  135 (283)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q  135 (283)
                      +.|+.. .+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....    ..+++.++|++|
T Consensus         8 ~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q   86 (218)
T cd03290           8 FSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQ   86 (218)
T ss_pred             EecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcC
Confidence            344434 45788999985 59999999999999999999999999887 999998876654321    223457999999


Q ss_pred             chHH-------HHHhCCCCCCChHHHHHHHHHHHHHccccc-----------cCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          136 ERIR-------AVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       136 ~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-----------~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      ++..       .+.+. +.. . .+...   +.++.+.+..           ..+..+.+ |+||+||+.||++++ +|.
T Consensus        87 ~~~~~~~t~~~nl~~~-~~~-~-~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  160 (218)
T cd03290          87 KPWLLNATVEENITFG-SPF-N-KQRYK---AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN  160 (218)
T ss_pred             CCccccccHHHHHhhc-CcC-C-HHHHH---HHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            8631       11111 111 1 11111   1222221111           12233444 999999999999998 488


Q ss_pred             EEEEe-CCCCCCch
Q 023354          196 IYIID-VSGGDKIP  208 (283)
Q Consensus       196 l~llD-pt~g~~l~  208 (283)
                      ++++| |+++.|..
T Consensus       161 illlDEPt~~LD~~  174 (218)
T cd03290         161 IVFLDDPFSALDIH  174 (218)
T ss_pred             EEEEeCCccccCHH
Confidence            88887 99987654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=2.2e-18  Score=148.80  Aligned_cols=171  Identities=18%  Similarity=0.096  Sum_probs=115.1

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHh-C
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVET-G  144 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~-~  144 (283)
                      ..+|++++|... |+.+||+|+||||||||||+|+|.++|+ |+|.+.+.-..     -+--..|+-|+-.- +.+.+ +
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~-----li~lg~Gf~pelTGreNi~l~~  114 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP-----LIELGAGFDPELTGRENIYLRG  114 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEeh-----hhhcccCCCcccchHHHHHHHH
Confidence            458999999955 9999999999999999999999999998 99987764321     12224555554332 11111 1


Q ss_pred             CCCCCChHHHHHHHHHHHHHc-cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC-CCC-chhh--------
Q 023354          145 GCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG-GDK-IPRK--------  210 (283)
Q Consensus       145 g~~~~~~~~~~~~~~~~l~~l-~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~-g~~-l~~~--------  210 (283)
                      .+...+ ++......+.+.+| .+.+..+.++.. |.||+-|++++.+.. +|-++|+| ..+ |+. ++++        
T Consensus       115 ~~~G~~-~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~  193 (249)
T COG1134         115 LILGLT-RKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL  193 (249)
T ss_pred             HHhCcc-HHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence            122122 22222222333333 345677888888 999999999998876 69999998 332 421 1111        


Q ss_pred             --cCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHh
Q 023354          211 --GGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALR  245 (283)
Q Consensus       211 --~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~  245 (283)
                        ...+           -++||+++.++.|.+...|++.+++..+...
T Consensus       194 ~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~  241 (249)
T COG1134         194 VEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED  241 (249)
T ss_pred             HHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence              1112           1799999999999999999999998866443

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.77  E-value=1e-18  Score=159.68  Aligned_cols=179  Identities=17%  Similarity=0.143  Sum_probs=132.6

Q ss_pred             CCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccC------CCcEEEEeecCCCCCHHHHHH----hc
Q 023354           62 PGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRD------KYSLAAVTNDIFTKEDGEFLM----RN  130 (283)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~------~g~i~i~~~d~~~~~~~~~~~----~i  130 (283)
                      |........++++++|... ||+++|+|.+|||||-..+.++++++.      +|+|.+.+.++-..+..+++.    +|
T Consensus        16 f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I   95 (534)
T COG4172          16 FHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKI   95 (534)
T ss_pred             EecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccce
Confidence            3434455568899999865 999999999999999999999999863      479999999998877776654    69


Q ss_pred             cccCCchHHH-----------HHhCCCCC-CChHHHHHHHHHHHHHccccc---cCCCcccC-CchHHHHHHHHHHhcC-
Q 023354          131 GALPEERIRA-----------VETGGCPH-AAIREDISINLGPLEELSNLF---KADLLLCE-SGGDNLAANFSRELAD-  193 (283)
Q Consensus       131 g~v~q~~~~~-----------i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e-SgGq~q~~~ia~al~~-  193 (283)
                      +++||+|..-           .+.-.+.. .+.++...++++.|+.+++..   .++.+.-| ||||+||+.||+||+. 
T Consensus        96 ~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~  175 (534)
T COG4172          96 GMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANE  175 (534)
T ss_pred             EEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCC
Confidence            9999998411           11101111 111223346677888877655   34555556 9999999999999995 


Q ss_pred             CcEEEEe-CCCCCC-------------chhhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDK-------------IPRKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~-------------l~~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.+++-| ||+.+|             ++.+.+..+           ++||+|++|..|.+++.|.....|.
T Consensus       176 P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~  247 (534)
T COG4172         176 PDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA  247 (534)
T ss_pred             CCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence            8899988 999754             233333321           7899999999999999998887775

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.77  E-value=2.6e-19  Score=152.84  Aligned_cols=127  Identities=11%  Similarity=0.009  Sum_probs=89.7

Q ss_pred             cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHh
Q 023354           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVET  143 (283)
Q Consensus        74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~  143 (283)
                      +++|.. +|++++|+|+||||||||+++|+|+++|+ |+|.+.+.++....    .+.++|++|...        +.+.+
T Consensus        18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~~~~tv~~~l~~   93 (195)
T PRK13541         18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLKLEMTVFENLKF   93 (195)
T ss_pred             EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCCccCCHHHHHHH
Confidence            488874 59999999999999999999999999988 99999887765321    245788887541        11111


Q ss_pred             CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       144 ~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      .....    .....+.+.++.+......+..+.+ |+||+||+.+|++++ +|.++++| |+++.|..
T Consensus        94 ~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~  157 (195)
T PRK13541         94 WSEIY----NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE  157 (195)
T ss_pred             HHHhc----ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            10000    0111234455666555555655556 999999999999999 58888888 99987754

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.77  E-value=4.6e-19  Score=148.00  Aligned_cols=169  Identities=17%  Similarity=0.040  Sum_probs=127.2

Q ss_pred             CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe-ecCCCCCHHHHHH-hccccCCchHHH------
Q 023354           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT-NDIFTKEDGEFLM-RNGALPEERIRA------  140 (283)
Q Consensus        71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~-~d~~~~~~~~~~~-~ig~v~q~~~~~------  140 (283)
                      ++++.+|... |+.-+|||||||||||++..|+|..+|+ |++.+.+ .|+..++..++.+ .||--||.|..+      
T Consensus        20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~   99 (249)
T COG4674          20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR   99 (249)
T ss_pred             eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHH
Confidence            7889999855 9999999999999999999999999998 9999999 8888887766654 588889987422      


Q ss_pred             --HHhCCCCCCCh---------HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCC
Q 023354          141 --VETGGCPHAAI---------REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDK  206 (283)
Q Consensus       141 --i~~~g~~~~~~---------~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~  206 (283)
                        +++..+....+         .+...++.+.|...++.+..+..-.. |.||+|++.|.+-+++ |.++++| |..|..
T Consensus       100 eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMT  179 (249)
T COG4674         100 ENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMT  179 (249)
T ss_pred             HHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCc
Confidence              22222222111         12223566778888887877777776 9999999999998885 9999998 888842


Q ss_pred             ch-------------hhcCCc---------ccccCEEEEEcCCcccccCChHHHH
Q 023354          207 IP-------------RKGGPG---------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       207 l~-------------~~~~~~---------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      -.             .+....         -++|++|-++..|.+.++|+..++-
T Consensus       180 d~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~  234 (249)
T COG4674         180 DAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ  234 (249)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence            11             111000         1789999999999999998775543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.77  E-value=3.3e-18  Score=167.64  Aligned_cols=170  Identities=14%  Similarity=0.052  Sum_probs=110.5

Q ss_pred             ccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      ...+.+..|.+ ....+++++|... |++++|+|||||||||||++|+|+++|+ |.|.+..           ...+||+
T Consensus         6 ~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~v   73 (552)
T TIGR03719         6 TMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGYL   73 (552)
T ss_pred             EEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEE
Confidence            34455555542 2357899999855 9999999999999999999999999987 9987642           1358888


Q ss_pred             CCchH--------HHHHhCCCC---------------CCChHH----------------------HHHHHHHHHHHcccc
Q 023354          134 PEERI--------RAVETGGCP---------------HAAIRE----------------------DISINLGPLEELSNL  168 (283)
Q Consensus       134 ~q~~~--------~~i~~~g~~---------------~~~~~~----------------------~~~~~~~~l~~l~~~  168 (283)
                      +|++.        +.+.++...               .....+                      ....+.+.++.++..
T Consensus        74 ~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  153 (552)
T TIGR03719        74 PQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP  153 (552)
T ss_pred             eccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC
Confidence            88752        112111100               000000                      001122334444432


Q ss_pred             ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEc
Q 023354          169 FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINK  225 (283)
Q Consensus       169 ~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K  225 (283)
                       ..+..+.+ |+||+||+.||++++ +|.++|+| |+++.|...         +...++           ..||++++++
T Consensus       154 -~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~  232 (552)
T TIGR03719       154 -PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELD  232 (552)
T ss_pred             -cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEE
Confidence             24566666 999999999999998 48888888 999876421         111121           5789999999


Q ss_pred             CCccc-ccCChHHH
Q 023354          226 TDLAS-AIGADLAV  238 (283)
Q Consensus       226 ~g~i~-~~g~~~e~  238 (283)
                      .|.+. +.|+..+.
T Consensus       233 ~g~i~~~~g~~~~~  246 (552)
T TIGR03719       233 RGRGIPWEGNYSSW  246 (552)
T ss_pred             CCEEEEecCCHHHH
Confidence            99865 55665543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.77  E-value=6.7e-19  Score=188.88  Aligned_cols=174  Identities=18%  Similarity=0.126  Sum_probs=122.9

Q ss_pred             CccccccCCCCCCCC-CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           53 PHSHEPIYSPGYFSR-RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      +.+.+.+++|.|+.. ..+.+++++|..+ |++++|+||+|||||||+++|+|+++|. |.+..            ++..
T Consensus       613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~------------~~~~  680 (1495)
T PLN03232        613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV------------IRGS  680 (1495)
T ss_pred             CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE------------ecCc
Confidence            357788899998864 3567999999855 9999999999999999999999999987 77631            3457


Q ss_pred             ccccCCchHH------HHHhCCCCCCChHHHHHHHHHH--HH-Hc-cccccCCCcccC-----CchHHHHHHHHHHhc-C
Q 023354          130 NGALPEERIR------AVETGGCPHAAIREDISINLGP--LE-EL-SNLFKADLLLCE-----SGGDNLAANFSRELA-D  193 (283)
Q Consensus       130 ig~v~q~~~~------~i~~~g~~~~~~~~~~~~~~~~--l~-~l-~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~  193 (283)
                      ++||+|++..      .+.+.|.+.  ..+....+.+.  |. .+ ...++.+..++|     |||||||+++|||+. +
T Consensus       681 Iayv~Q~p~Lf~gTIreNI~fg~~~--~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~  758 (1495)
T PLN03232        681 VAYVPQVSWIFNATVRENILFGSDF--ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN  758 (1495)
T ss_pred             EEEEcCccccccccHHHHhhcCCcc--CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcC
Confidence            9999999752      222223332  22233332221  11 11 123466777877     999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCchh------h------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPR------K------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~------~------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +.|+++| |+++.|...      +      .+.+          +..||+|++++.|++.+.|+..+.+.
T Consensus       759 ~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~  828 (1495)
T PLN03232        759 SDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK  828 (1495)
T ss_pred             CCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence            6666666 999865221      0      0111          37899999999999999998776653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.76  E-value=9.8e-19  Score=173.88  Aligned_cols=168  Identities=15%  Similarity=0.059  Sum_probs=116.2

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+++..|..  ...+.+++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+...           ..+||
T Consensus       313 l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy  379 (638)
T PRK10636        313 LKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY  379 (638)
T ss_pred             EEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence            445555555532  35788899985 59999999999999999999999999987 99887421           25788


Q ss_pred             cCCchHHH-------HH-hCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERIRA-------VE-TGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~~~-------i~-~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      ++|.....       .. +...   ........+...|..+.... ..+..+.+ ||||+||+.||++++ +|.|+|+| 
T Consensus       380 ~~Q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE  456 (638)
T PRK10636        380 FAQHQLEFLRADESPLQHLARL---APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE  456 (638)
T ss_pred             ecCcchhhCCccchHHHHHHHh---CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            88863211       00 0000   00111123455677776642 45666666 999999999999998 48888888 


Q ss_pred             CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCccc-ccCChHHH
Q 023354          201 VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLAS-AIGADLAV  238 (283)
Q Consensus       201 pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~-~~g~~~e~  238 (283)
                      ||++.|+..         .+..++           .+||+|++++.|.+. +.|+..+.
T Consensus       457 Pt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        457 PTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence            999976532         111121           679999999999986 66766554

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.76  E-value=1.5e-18  Score=184.77  Aligned_cols=164  Identities=13%  Similarity=0.110  Sum_probs=119.3

Q ss_pred             CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc---CC-CcEEEEeecCCCCCHHHHHHhccccCCchH----
Q 023354           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR---DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (283)
Q Consensus        68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~---~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (283)
                      ....++++++..+ |++++|+|||||||||||++|+|+.+   ++ |+|.+++.++.    ..+++.+||++|+..    
T Consensus       775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~  850 (1394)
T TIGR00956       775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPT  850 (1394)
T ss_pred             CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCC
Confidence            3467899999854 99999999999999999999999987   56 99999988763    245678999999742    


Q ss_pred             ----HHHHhCCC---CC-CChHHHHHHHHHHHHHccccccCCCccc----C-CchHHHHHHHHHHhc-CCc-EEEEe-CC
Q 023354          139 ----RAVETGGC---PH-AAIREDISINLGPLEELSNLFKADLLLC----E-SGGDNLAANFSRELA-DYI-IYIID-VS  202 (283)
Q Consensus       139 ----~~i~~~g~---~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~----e-SgGq~q~~~ia~al~-~~~-l~llD-pt  202 (283)
                          +.+.+...   +. ....+....+.+.++.+++.+..|..+.    . |+||+||+.||++|+ +|. |+++| ||
T Consensus       851 ~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPT  930 (1394)
T TIGR00956       851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPT  930 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCC
Confidence                22222111   11 1112223355677888887777788776    3 999999999999998 574 67776 99


Q ss_pred             CCCCchh------------hcCCc------------ccccCEEEEEcCC-cccccCCh
Q 023354          203 GGDKIPR------------KGGPG------------ITQADLLVINKTD-LASAIGAD  235 (283)
Q Consensus       203 ~g~~l~~------------~~~~~------------i~~ad~ivi~K~g-~i~~~g~~  235 (283)
                      +|.|...            +.+.+            +..+|++++++.| ++.+.|+.
T Consensus       931 sgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~  988 (1394)
T TIGR00956       931 SGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL  988 (1394)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence            9976321            11111            2468999999987 99888875

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.76  E-value=1.2e-19  Score=149.13  Aligned_cols=177  Identities=13%  Similarity=0.084  Sum_probs=131.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCCh----HHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI----REDI  155 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~----~~~~  155 (283)
                      .|+++-++|||||||||||..++|+++.+|+|.+.+.++..+...++.+.-+|+.|...-...+..+.+.+.    .+..
T Consensus        24 aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a  103 (248)
T COG4138          24 AGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRT  103 (248)
T ss_pred             cceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHH
Confidence            499999999999999999999999998889999999999988888999988998876432222222222111    2222


Q ss_pred             HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC--------CcEEEEe-CCCCCCchhhc--------------
Q 023354          156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD--------YIIYIID-VSGGDKIPRKG--------------  211 (283)
Q Consensus       156 ~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~--------~~l~llD-pt~g~~l~~~~--------------  211 (283)
                      ..+.+....+.+.+...+.+.. |||+.||+.+|....+        ..++++| |.++.|+..+.              
T Consensus       104 ~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~  183 (248)
T COG4138         104 ELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL  183 (248)
T ss_pred             HHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCc
Confidence            2333444555566666666666 9999999999976542        4577777 98887654321              


Q ss_pred             ---------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEE
Q 023354          212 ---------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ  256 (283)
Q Consensus       212 ---------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~is  256 (283)
                               +.+++.||.++++|.|++...|...+++....+...|+..+-...
T Consensus       184 ~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~fg~~frr~~  237 (248)
T COG4138         184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYGMNFRRLD  237 (248)
T ss_pred             EEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHhccceEEEe
Confidence                     123488999999999999999999999999999988887765544

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.76  E-value=2.7e-18  Score=148.64  Aligned_cols=159  Identities=14%  Similarity=-0.008  Sum_probs=97.0

Q ss_pred             CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE-EEeecCCCCCHHHHHHhccccCCch-HHHHHhC-C
Q 023354           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-AVTNDIFTKEDGEFLMRNGALPEER-IRAVETG-G  145 (283)
Q Consensus        71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~-i~~~d~~~~~~~~~~~~ig~v~q~~-~~~i~~~-g  145 (283)
                      ++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|. +.+..+. ..     ....+.+.-. .+.+.+. .
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-~~-----~~~~l~~~ltv~enl~~~~~   75 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-LG-----ANSFILPGLTGEENARMMAS   75 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-cc-----cccccCCcCcHHHHHHHHHH
Confidence            4678888854 9999999999999999999999999887 9986 4443221 00     0111222111 1222221 1


Q ss_pred             CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch----------hhc-
Q 023354          146 CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP----------RKG-  211 (283)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~----------~~~-  211 (283)
                      ..... ......  ..+..+......+..+.+ |+||+||+++|++++ +|.++++| |+++.+..          +.. 
T Consensus        76 ~~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~  152 (213)
T PRK15177         76 LYGLD-GDEFSH--FCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ  152 (213)
T ss_pred             HcCCC-HHHHHH--HHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh
Confidence            00111 111111  111222333445666666 999999999999998 58888888 77764321          111 


Q ss_pred             CCc----------c-cccCEEEEEcCCcccccCChHHH
Q 023354          212 GPG----------I-TQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       212 ~~~----------i-~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      ..+          + .+||++++++.|++.+.++..+.
T Consensus       153 ~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  190 (213)
T PRK15177        153 QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA  190 (213)
T ss_pred             CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence            111          1 57999999999999887655444

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.76  E-value=9e-18  Score=153.73  Aligned_cols=190  Identities=19%  Similarity=0.194  Sum_probs=131.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-------HHHHHHhccccCCchHHHH-HhCCCCCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------DGEFLMRNGALPEERIRAV-ETGGCPHA  149 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-------~~~~~~~ig~v~q~~~~~i-~~~g~~~~  149 (283)
                      .+..+|+|+|++|||||||++.|...+... .++.++..|+....       ++.+...++   .++..++ .++++.  
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~---~~~~~~~r~~~~~~--  128 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLS---RHPNAFIRPSPSSG--  128 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhc---CCCCeEEEecCCcc--
Confidence            446799999999999999999999988865 58999999987542       222222222   1111122 123322  


Q ss_pred             ChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcc
Q 023354          150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA  229 (283)
Q Consensus       150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i  229 (283)
                      ........+.+.+..+ ...++|.+++|+.|..|....+..++|..+++++|.+|++++.....++++||.+|+||+|++
T Consensus       129 ~l~~~a~~~~~~~~~~-~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~  207 (332)
T PRK09435        129 TLGGVARKTRETMLLC-EAAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGD  207 (332)
T ss_pred             cccchHHHHHHHHHHH-hccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhccc
Confidence            2222222334444444 456899999999998887766777889999999999999887654446799999999999988


Q ss_pred             cccCChHHHHhHHHHhhc---C-----C-CCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          230 SAIGADLAVMERDALRMR---D-----G-GPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       230 ~~~g~~~e~~~~~~~~~~---~-----~-~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ...+  .+.....+....   .     + .|++.+|++++.|+++|++++...++.
T Consensus       208 ~~~~--a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        208 NKTA--ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             chhH--HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6532  222222222211   1     2 689999999999999999999987653

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.76  E-value=4.1e-18  Score=167.01  Aligned_cols=167  Identities=13%  Similarity=0.070  Sum_probs=109.2

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+++..|..  ...+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+ +.+          ..+||
T Consensus       323 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~----------~~i~~  389 (552)
T TIGR03719       323 IEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET----------VKLAY  389 (552)
T ss_pred             EEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc----------eEEEE
Confidence            444455555532  357888999855 9999999999999999999999999987 99876 322          15888


Q ss_pred             cCCchH---------HHHHhCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          133 LPEERI---------RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       133 v~q~~~---------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ++|++.         +.+..+..... .........+.++.++... ..+..+.+ |+||+||++||++++ +|.++++|
T Consensus       390 v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD  468 (552)
T TIGR03719       390 VDQSRDALDPNKTVWEEISGGLDIIQ-LGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD  468 (552)
T ss_pred             EeCCccccCCCCcHHHHHHhhccccc-cCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence            888741         11222111000 0000112335677776643 35666777 999999999999998 48888888


Q ss_pred             -CCCCCCchhh---------cCCc-----------ccccCEEEEEcC-Cccc-ccCCh
Q 023354          201 -VSGGDKIPRK---------GGPG-----------ITQADLLVINKT-DLAS-AIGAD  235 (283)
Q Consensus       201 -pt~g~~l~~~---------~~~~-----------i~~ad~ivi~K~-g~i~-~~g~~  235 (283)
                       |+++.|....         ...+           ..+||++++++. |.+. ..|..
T Consensus       469 EPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~  526 (552)
T TIGR03719       469 EPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNY  526 (552)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCH
Confidence             9999764321         1111           156888888875 4554 33444

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.75  E-value=1.4e-18  Score=172.71  Aligned_cols=167  Identities=14%  Similarity=0.017  Sum_probs=107.8

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC----CCCCHHHHHHhccccCCchHHHHH
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI----FTKEDGEFLMRNGALPEERIRAVE  142 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~----~~~~~~~~~~~ig~v~q~~~~~i~  142 (283)
                      ...+++++|... |++++|+|||||||||||++|+|++.|+ |.|.+.+...    .+......+..+++++|....+..
T Consensus        14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~~~~~~   93 (638)
T PRK10636         14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ   93 (638)
T ss_pred             ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhhHHHHH
Confidence            357899999855 9999999999999999999999999887 9998765421    110100012234555543211100


Q ss_pred             hC-------CCCC----CCh---------HHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          143 TG-------GCPH----AAI---------REDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       143 ~~-------g~~~----~~~---------~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      +.       ....    ...         ......+...|..++.. ...+..+.+ ||||+||++||++|+ +|.|+|+
T Consensus        94 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLL  173 (638)
T PRK10636         94 LEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLL  173 (638)
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEE
Confidence            00       0000    000         00112345567777765 356777777 999999999999998 5888888


Q ss_pred             e-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCcccc-cCCh
Q 023354          200 D-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLASA-IGAD  235 (283)
Q Consensus       200 D-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~~-~g~~  235 (283)
                      | ||++.|...         .+..++           ..||+|++++.|.+.. .|..
T Consensus       174 DEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~  231 (638)
T PRK10636        174 DEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNY  231 (638)
T ss_pred             cCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCH
Confidence            8 999976432         112221           6799999999999853 4443

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.75  E-value=2.2e-18  Score=185.16  Aligned_cols=171  Identities=16%  Similarity=0.166  Sum_probs=118.0

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .+...++++.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|. |+|.+.+             .++
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~  702 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVA  702 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEE
Confidence            46677888888765567899999985 59999999999999999999999999987 9988754             488


Q ss_pred             ccCCchH-------HHHHhCCCCCCChHHHHHHHHHH---HHHccc-cccCCCcccC-----CchHHHHHHHHHHhc-CC
Q 023354          132 ALPEERI-------RAVETGGCPHAAIREDISINLGP---LEELSN-LFKADLLLCE-----SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       132 ~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~---l~~l~~-~~~~d~~i~e-----SgGq~q~~~ia~al~-~~  194 (283)
                      |++|++.       +.+.++ .+.  ..+....+.+.   .+.+.. ..+.+..+.+     ||||+||+++||++. ++
T Consensus       703 yv~Q~~~l~~~Ti~eNI~~g-~~~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~  779 (1522)
T TIGR00957       703 YVPQQAWIQNDSLRENILFG-KAL--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA  779 (1522)
T ss_pred             EEcCCccccCCcHHHHhhcC-Ccc--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            9999864       122222 221  11222222221   122221 1233444444     999999999999998 47


Q ss_pred             cEEEEe-CCCCCCchh--------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKIPR--------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~--------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .++++| |+++.|...              ..+.+          +..||+|++++.|++.+.|+..+.+.
T Consensus       780 ~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~  850 (1522)
T TIGR00957       780 DIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ  850 (1522)
T ss_pred             CEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence            666666 999865311              01111          26699999999999999888766653

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03073 ABC transporter F family; Provisional

Probab=99.75  E-value=1.9e-18  Score=173.16  Aligned_cols=167  Identities=16%  Similarity=0.092  Sum_probs=114.7

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .+...++++.|.. ....+.+++|... |++++|+|||||||||||++|+|+++|+ |+|.+..           ...+|
T Consensus       508 ~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ig  575 (718)
T PLN03073        508 IISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMA  575 (718)
T ss_pred             eEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEE
Confidence            4556666776643 2347888999854 9999999999999999999999999987 9887532           13588


Q ss_pred             ccCCchHHH--------HHh-CCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          132 ALPEERIRA--------VET-GGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       132 ~v~q~~~~~--------i~~-~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      |++|.....        ..+ ...+...    ...+...|+.++... ..+..+.+ ||||+||++||++++ +|.++|+
T Consensus       576 yv~Q~~~~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL  651 (718)
T PLN03073        576 VFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL  651 (718)
T ss_pred             EEeccccccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            888864210        000 0011111    123445677776653 44566666 999999999999998 5888888


Q ss_pred             e-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCccc-ccCChH
Q 023354          200 D-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLAS-AIGADL  236 (283)
Q Consensus       200 D-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~-~~g~~~  236 (283)
                      | ||++.|...         ....++           ..||++++++.|.+. ..|+..
T Consensus       652 DEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~  710 (718)
T PLN03073        652 DEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFH  710 (718)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHH
Confidence            8 999976431         111121           578999999999887 455443

>PLN03130 ABC transporter C family member; Provisional

Probab=99.75  E-value=2.4e-18  Score=185.25  Aligned_cols=173  Identities=20%  Similarity=0.176  Sum_probs=122.1

Q ss_pred             CccccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEeecCCCCCHHHHHH
Q 023354           53 PHSHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~d~~~~~~~~~~~  128 (283)
                      +.+.+.+++|.|+... .+.+++++|.. +|++++|+||+|||||||+++|+|++.|.  |+|.+             +.
T Consensus       613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~  679 (1622)
T PLN03130        613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RG  679 (1622)
T ss_pred             CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cC
Confidence            3577888899987643 56799999985 49999999999999999999999999874  57752             35


Q ss_pred             hccccCCchH------HHHHhCCCCCCChHHHHHHHHHH--HHH-c-cccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354          129 RNGALPEERI------RAVETGGCPHAAIREDISINLGP--LEE-L-SNLFKADLLLCE-----SGGDNLAANFSRELA-  192 (283)
Q Consensus       129 ~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~~--l~~-l-~~~~~~d~~i~e-----SgGq~q~~~ia~al~-  192 (283)
                      .++||+|++.      +.+.+.|.+.  ..+....+.+.  |.. + ....+.+..++|     |||||||+++|||+. 
T Consensus       680 ~Iayv~Q~p~LfngTIreNI~fg~~~--d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~  757 (1622)
T PLN03130        680 TVAYVPQVSWIFNATVRDNILFGSPF--DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS  757 (1622)
T ss_pred             eEEEEcCccccCCCCHHHHHhCCCcc--cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence            7999999975      2222333332  22233332221  111 1 123456777777     999999999999998 


Q ss_pred             CCcEEEEe-CCCCCCchh------h------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 DYIIYIID-VSGGDKIPR------K------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~------~------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++.|+++| |+++.|...      +      .+.+          +..||+|++++.|++.+.|+..+.+.
T Consensus       758 ~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~  828 (1622)
T PLN03130        758 NSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN  828 (1622)
T ss_pred             CCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence            56666666 999865311      0      0111          37899999999999999998777653

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.75  E-value=2.3e-18  Score=140.28  Aligned_cols=86  Identities=15%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (283)
Q Consensus        70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~  147 (283)
                      ..+.+.+|. .+|++++|+|+||||||||+++|+|+++|+ |+|.+.+.           ..++|++|            
T Consensus        14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~------------   70 (144)
T cd03221          14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ------------   70 (144)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc------------
Confidence            477888888 459999999999999999999999999987 99988663           35777776            


Q ss_pred             CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                                                   -|+||+||+++||+++ +|.++++| |+++.|.
T Consensus        71 -----------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~  103 (144)
T cd03221          71 -----------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL  103 (144)
T ss_pred             -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence                                         2999999999999998 57787777 9998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.75  E-value=9.2e-18  Score=164.67  Aligned_cols=169  Identities=12%  Similarity=0.052  Sum_probs=110.4

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+++..|..  ...+.+++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+ +.+          ..+||
T Consensus       325 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~----------~~i~~  391 (556)
T PRK11819        325 IEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET----------VKLAY  391 (556)
T ss_pred             EEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc----------eEEEE
Confidence            444555555532  357888999855 9999999999999999999999999987 99976 322          15889


Q ss_pred             cCCch-H--------HHHHhCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          133 LPEER-I--------RAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       133 v~q~~-~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ++|+. .        +.+.++. ...............++.++... ..+..+.+ |+||+||+.||++++ +|.++++|
T Consensus       392 v~q~~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  470 (556)
T PRK11819        392 VDQSRDALDPNKTVWEEISGGL-DIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD  470 (556)
T ss_pred             EeCchhhcCCCCCHHHHHHhhc-ccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            98874 1        1121211 00000000112234677776643 35666777 999999999999998 58888888


Q ss_pred             -CCCCCCchhh---------cCCc-----------ccccCEEEEEcC-Cccc-ccCChHH
Q 023354          201 -VSGGDKIPRK---------GGPG-----------ITQADLLVINKT-DLAS-AIGADLA  237 (283)
Q Consensus       201 -pt~g~~l~~~---------~~~~-----------i~~ad~ivi~K~-g~i~-~~g~~~e  237 (283)
                       |+++.|....         ...+           ..+||++++++. |.+. ..|...+
T Consensus       471 EPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~  530 (556)
T PRK11819        471 EPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQE  530 (556)
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence             9999764321         1111           156888888875 5554 3444433

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.75  E-value=4.1e-18  Score=181.50  Aligned_cols=170  Identities=9%  Similarity=-0.035  Sum_probs=118.1

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc----cCC-CcEEEEeecCCCCCHHHHHHhccccCCchH----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL----RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI----  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~----~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~----  138 (283)
                      ...++++++.. +|++++|+||||||||||||+|+|+.    .|. |+|.+.+.++.... ...++.++|++|+..    
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence            45788898885 59999999999999999999999986    344 99999887764321 233456999999742    


Q ss_pred             ----HHHHhCCC---CC----CChHHH-HHH-HHHHHHHccccccCCCccc-----C-CchHHHHHHHHHHhc-CCcEEE
Q 023354          139 ----RAVETGGC---PH----AAIRED-ISI-NLGPLEELSNLFKADLLLC-----E-SGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       139 ----~~i~~~g~---~~----~~~~~~-~~~-~~~~l~~l~~~~~~d~~i~-----e-SgGq~q~~~ia~al~-~~~l~l  198 (283)
                          +.+.++..   +.    ...++. ... ....++.+++.+..+..++     . ||||+||+.||++++ +|.|++
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence                22322211   11    011222 222 2346777877766665543     3 999999999999998 588888


Q ss_pred             Ee-CCCCCCch-------------hhcCCc------------ccccCEEEEEcCCcccccCChHHHH
Q 023354          199 ID-VSGGDKIP-------------RKGGPG------------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       199 lD-pt~g~~l~-------------~~~~~~------------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +| ||+|+|..             ++.+.+            .+.+|+|++++.|++++.|+..+..
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~  299 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK  299 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence            87 99997532             111211            2578999999999999998876553

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.75  E-value=5.3e-18  Score=168.70  Aligned_cols=164  Identities=13%  Similarity=0.080  Sum_probs=110.7

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+++..|..  ...+.+++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+ +..          ..+||
T Consensus       320 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----------~~i~y  386 (635)
T PRK11147        320 FEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----------LEVAY  386 (635)
T ss_pred             EEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC----------cEEEE
Confidence            444555555532  34788889885 59999999999999999999999999987 99876 432          15788


Q ss_pred             cCCchH---------HHHHhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          133 LPEERI---------RAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       133 v~q~~~---------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ++|...         +.+..+ ............+...|..+... ...+..+.+ ||||+||+.||++++ +|.++|+|
T Consensus       387 ~~q~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD  465 (635)
T PRK11147        387 FDQHRAELDPEKTVMDNLAEG-KQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD  465 (635)
T ss_pred             EeCcccccCCCCCHHHHHHhh-cccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            888631         112221 11110011112344566666553 345666666 999999999999998 48888888


Q ss_pred             -CCCCCCchh---------hcCCcc-----------cccCEEEEEc-CCccccc
Q 023354          201 -VSGGDKIPR---------KGGPGI-----------TQADLLVINK-TDLASAI  232 (283)
Q Consensus       201 -pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K-~g~i~~~  232 (283)
                       ||++.|...         .+..++           .+||++++++ .|.+...
T Consensus       466 EPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~  519 (635)
T PRK11147        466 EPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY  519 (635)
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence             999976532         111121           6799999997 7887653

>PRK13409 putative ATPase RIL; Provisional

Probab=99.74  E-value=7.2e-18  Score=165.97  Aligned_cols=142  Identities=16%  Similarity=0.121  Sum_probs=100.6

Q ss_pred             ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHH
Q 023354           72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (283)
Q Consensus        72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i  141 (283)
                      +..++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.             ..++|+||+..        +.+
T Consensus       355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l  421 (590)
T PRK13409        355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLL  421 (590)
T ss_pred             EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHH
Confidence            6667776 459999999999999999999999999987 988763             14788888642        112


Q ss_pred             HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------
Q 023354          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------  209 (283)
Q Consensus       142 ~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------  209 (283)
                      ..+.... . ..  ....+.|+.+++....+..+.+ ||||+||++||++++ +|.|+|+| ||++.|...         
T Consensus       422 ~~~~~~~-~-~~--~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~  497 (590)
T PRK13409        422 RSITDDL-G-SS--YYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR  497 (590)
T ss_pred             HHHhhhc-C-hH--HHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            1111000 0 01  1234577777777667888877 999999999999998 48888888 999976421         


Q ss_pred             ----hcCCc-----------ccccCEEEEEcCCcccc
Q 023354          210 ----KGGPG-----------ITQADLLVINKTDLASA  231 (283)
Q Consensus       210 ----~~~~~-----------i~~ad~ivi~K~g~i~~  231 (283)
                          +.+.+           ..+||++++++. .+..
T Consensus       498 ~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~  533 (590)
T PRK13409        498 RIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK  533 (590)
T ss_pred             HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence                11222           167999999975 5544

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.74  E-value=7.1e-18  Score=141.77  Aligned_cols=110  Identities=16%  Similarity=0.102  Sum_probs=79.0

Q ss_pred             CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCC
Q 023354           67 RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG  145 (283)
Q Consensus        67 ~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g  145 (283)
                      ..++++++++|..+ |++++|+|||||||||||+++++   ..|++.+.+... ..    .+..++|++|          
T Consensus         6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~-~~----~~~~~~~~~q----------   67 (176)
T cd03238           6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLP-KF----SRNKLIFIDQ----------   67 (176)
T ss_pred             eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCccc-cc----ccccEEEEhH----------
Confidence            34567889999855 99999999999999999999864   358887654321 11    1234566654          


Q ss_pred             CCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-C--CcEEEEe-CCCCCCc
Q 023354          146 CPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-D--YIIYIID-VSGGDKI  207 (283)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~--~~l~llD-pt~g~~l  207 (283)
                                   .+.++.+.+.. ..+..+.+ |+||+||+++|++++ +  |.++++| |+++.+.
T Consensus        68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~  122 (176)
T cd03238          68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ  122 (176)
T ss_pred             -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence                         13455555443 24555555 999999999999998 6  8888888 9998653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.74  E-value=5.1e-18  Score=169.37  Aligned_cols=144  Identities=14%  Similarity=0.002  Sum_probs=97.5

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|+++ ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |++.+..           ++.
T Consensus       449 ~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~  516 (659)
T TIGR00954       449 DNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGK  516 (659)
T ss_pred             CCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCc
Confidence            3557788888877643 36789999985 49999999999999999999999999887 8876531           356


Q ss_pred             ccccCCchH-------HHHHhCCCCCC--ChHHHHHHHHHHHHHccccccCCCc------c---cC-CchHHHHHHHHHH
Q 023354          130 NGALPEERI-------RAVETGGCPHA--AIREDISINLGPLEELSNLFKADLL------L---CE-SGGDNLAANFSRE  190 (283)
Q Consensus       130 ig~v~q~~~-------~~i~~~g~~~~--~~~~~~~~~~~~l~~l~~~~~~d~~------i---~e-SgGq~q~~~ia~a  190 (283)
                      ++|++|++.       +.+..+.....  ........+.+.++.++..+..+.+      .   .+ ||||+||+++||+
T Consensus       517 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa  596 (659)
T TIGR00954       517 LFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL  596 (659)
T ss_pred             EEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence            899999863       22222211000  0000011233455555443322221      1   22 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCc
Q 023354          191 LA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l  207 (283)
                      ++ +|.++++| |+++.|.
T Consensus       597 l~~~p~illLDEpts~LD~  615 (659)
T TIGR00954       597 FYHKPQFAILDECTSAVSV  615 (659)
T ss_pred             HHcCCCEEEEeCCccCCCH
Confidence            98 48888887 9998764

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.73  E-value=2.1e-17  Score=139.07  Aligned_cols=86  Identities=23%  Similarity=0.154  Sum_probs=69.6

Q ss_pred             Cccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC
Q 023354           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (283)
Q Consensus        71 ~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~  148 (283)
                      ++.+. |. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.            .++|++|...          
T Consensus        15 ~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~q~~~----------   71 (177)
T cd03222          15 LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKPQYID----------   71 (177)
T ss_pred             EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEcccCC----------
Confidence            44443 44 569999999999999999999999999987 99988764            2567776421          


Q ss_pred             CChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       149 ~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                                                  -|+||+||+++|++++ +|.++++| |+++.|.
T Consensus        72 ----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~  104 (177)
T cd03222          72 ----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI  104 (177)
T ss_pred             ----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence                                        2999999999999998 58888887 9998653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.72  E-value=2.1e-17  Score=176.10  Aligned_cols=163  Identities=16%  Similarity=0.079  Sum_probs=115.6

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC---CCcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (283)
                      ..++++++.. +|++++|+|||||||||||++|+|...+   +|+|.+.+.+..   ...+++.+||++|+..       
T Consensus       894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~~~~~lTV  970 (1470)
T PLN03140        894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDIHSPQVTV  970 (1470)
T ss_pred             eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccccCCCCcH
Confidence            5678888885 4999999999999999999999998763   388988776542   2345567999999752       


Q ss_pred             -HHHHhCC---CCCC-ChHHHHHHHHHHHHHccccccCCCccc-----C-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354          139 -RAVETGG---CPHA-AIREDISINLGPLEELSNLFKADLLLC-----E-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (283)
Q Consensus       139 -~~i~~~g---~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~-----e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~  205 (283)
                       +.+.+..   .+.. ...+....+.+.++.+++....+..++     . ||||+||+.||++|+ +|.|+++| ||+|+
T Consensus       971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140        971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence             2222211   1111 112222345667788877766677653     3 999999999999998 58888887 99997


Q ss_pred             Cchh------------hcCCc------------ccccCEEEEEcC-CcccccCCh
Q 023354          206 KIPR------------KGGPG------------ITQADLLVINKT-DLASAIGAD  235 (283)
Q Consensus       206 ~l~~------------~~~~~------------i~~ad~ivi~K~-g~i~~~g~~  235 (283)
                      |...            +.+.+            +..+|++++++. |++++.|+.
T Consensus      1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140       1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence            6321            11111            267899999996 898888875

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.72  E-value=3.8e-17  Score=167.63  Aligned_cols=207  Identities=19%  Similarity=0.132  Sum_probs=147.5

Q ss_pred             CCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHHHhccccCCchHHH
Q 023354           64 YFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRA  140 (283)
Q Consensus        64 ~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~  140 (283)
                      |..... +.+++++.. +||++|++|+|||||||++++|+|..+|+ |++.+.+.++.... ..+.++.+||.||.....
T Consensus       574 y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~  652 (885)
T KOG0059|consen  574 YGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALW  652 (885)
T ss_pred             ecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhh
Confidence            443333 788888885 49999999999999999999999999998 99999888887543 445788999999985422


Q ss_pred             HHhCCCCCC--------ChHHHHH-HHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          141 VETGGCPHA--------AIREDIS-INLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       141 i~~~g~~~~--------~~~~~~~-~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      -.+.+..+.        -.+.++. .+...++.+.+.+..+..+.. |||+++|+.+|.+++ +|.++++| |++|.|..
T Consensus       653 ~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~  732 (885)
T KOG0059|consen  653 EELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK  732 (885)
T ss_pred             hhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence            222221111        1122333 345677888888888888777 999999999999998 58877777 99998753


Q ss_pred             hh------------cCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          209 RK------------GGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       209 ~~------------~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      .+            .+..+           ..|+|+.++-.|++...|++.+     ++......-++.+..+.....++
T Consensus       733 arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~-----LKsrfG~gy~l~~~~~~~~~~~~  807 (885)
T KOG0059|consen  733 ARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQE-----LKSRYGSGYTLTVRIKELPEVSE  807 (885)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHH-----HHhhcCCcEEEEEEECCCcccch
Confidence            21            11111           5799999999999999998854     34444555566666665444456


Q ss_pred             HHHHHHHHHHH
Q 023354          266 IVNHILQAWEA  276 (283)
Q Consensus       266 l~~~l~~~~~~  276 (283)
                      +...+...++.
T Consensus       808 v~~~~~~~~p~  818 (885)
T KOG0059|consen  808 VEKLLQNRFPG  818 (885)
T ss_pred             HHHHHHHhCCC
Confidence            66666665544

>PRK13409 putative ATPase RIL; Provisional

Probab=99.71  E-value=8.9e-18  Score=165.32  Aligned_cols=153  Identities=19%  Similarity=0.108  Sum_probs=102.7

Q ss_pred             CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE-----------EEeecCCCCCHHHH---HHhccccC
Q 023354           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEF---LMRNGALP  134 (283)
Q Consensus        70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~-----------i~~~d~~~~~~~~~---~~~ig~v~  134 (283)
                      ..|.+++...+|++++|+||||||||||||+|+|+++|+ |+|.           +.+.++..... .+   ...+++.+
T Consensus        88 ~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~-~~~~~~~~~~~~~  166 (590)
T PRK13409         88 FKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK-KLYNGEIKVVHKP  166 (590)
T ss_pred             eeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH-HHhccCcceeecc
Confidence            467777755679999999999999999999999999998 9986           55555432111 11   12245555


Q ss_pred             CchHHHHHhCCCCCCChHH------HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354          135 EERIRAVETGGCPHAAIRE------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (283)
Q Consensus       135 q~~~~~i~~~g~~~~~~~~------~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~  205 (283)
                      |.......+  + ..++.+      ....+.+.++.+++....++.+.+ |+||+||++||++++ +|.++++| |++++
T Consensus       167 q~~~~~p~~--~-~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~L  243 (590)
T PRK13409        167 QYVDLIPKV--F-KGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYL  243 (590)
T ss_pred             cchhhhhhh--h-cchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence            543211110  0 001111      122445677777777667888877 999999999999998 58888888 99987


Q ss_pred             Cchh---------hc--CCcc-----------cccCEEEEEcC
Q 023354          206 KIPR---------KG--GPGI-----------TQADLLVINKT  226 (283)
Q Consensus       206 ~l~~---------~~--~~~i-----------~~ad~ivi~K~  226 (283)
                      |...         +.  +.++           ..||+++++..
T Consensus       244 D~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~  286 (590)
T PRK13409        244 DIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYG  286 (590)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            6431         11  2221           67999999965

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.71  E-value=1.8e-17  Score=136.50  Aligned_cols=98  Identities=22%  Similarity=0.322  Sum_probs=82.2

Q ss_pred             CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (283)
Q Consensus        70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~  147 (283)
                      ..+.+.+|. .+|++++|+|+||||||||+++|+|++++. |++.+.+.++.......+.+.++|++|            
T Consensus        13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q------------   80 (157)
T cd00267          13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ------------   80 (157)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee------------
Confidence            478888888 459999999999999999999999999987 999999887765445555667888776            


Q ss_pred             CCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                                                   -|+||+||+.++++++ +|.++++| |+++.|..
T Consensus        81 -----------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~  114 (157)
T cd00267          81 -----------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA  114 (157)
T ss_pred             -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence                                         2999999999999998 57777777 99987653

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=9.9e-17  Score=131.97  Aligned_cols=170  Identities=22%  Similarity=0.211  Sum_probs=113.0

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC-----CCCCHHHH----HHhccccCCchH
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-----FTKEDGEF----LMRNGALPEERI  138 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~-----~~~~~~~~----~~~ig~v~q~~~  138 (283)
                      ..-.+++|.- +|++.+|+|.+||||||||++|++.+.|+ |.|.+...+-     .....++.    +...|+|.|+|.
T Consensus        20 ~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~   99 (258)
T COG4107          20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR   99 (258)
T ss_pred             cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence            3556788874 59999999999999999999999999998 9998887433     23333332    335899999875


Q ss_pred             HHH----HhCCCCCCC-------hHHHH-HHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CC
Q 023354          139 RAV----ETGGCPHAA-------IREDI-SINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VS  202 (283)
Q Consensus       139 ~~i----~~~g~~~~~-------~~~~~-~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt  202 (283)
                      .-+    ..|+.....       -..++ ....++|+++.+.. ..|-.... |||++||+.|||.|+. |.++++| ||
T Consensus       100 DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPT  179 (258)
T COG4107         100 DGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPT  179 (258)
T ss_pred             ccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCC
Confidence            211    112111100       01122 24456787775543 23333333 9999999999999984 8888887 88


Q ss_pred             CCCCchh-------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          203 GGDKIPR-------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       203 ~g~~l~~-------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      .|.+..-             +.+..           --.|+++.++|.|.+++.|-...++
T Consensus       180 GGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvL  240 (258)
T COG4107         180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVL  240 (258)
T ss_pred             CCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccc
Confidence            8865321             11111           0468899999999999877555444

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.70  E-value=2.3e-17  Score=164.23  Aligned_cols=175  Identities=17%  Similarity=0.025  Sum_probs=106.0

Q ss_pred             ccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC-CCCCHHHHHHhccccC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLMRNGALP  134 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~-~~~~~~~~~~~ig~v~  134 (283)
                      .+++..|..  ...+.+++|... |++++|+|||||||||||++|+|+++|+ |+|.+.+... ...........+++++
T Consensus         7 ~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~   84 (635)
T PRK11147          7 HGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVY   84 (635)
T ss_pred             eeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHH
Confidence            344444432  357889999854 9999999999999999999999999987 9998764210 0000000011122222


Q ss_pred             CchH-----------HH--HHh-CCCCC-----------------CChHHHHHHHHHHHHHccccccCCCcccC-CchHH
Q 023354          135 EERI-----------RA--VET-GGCPH-----------------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDN  182 (283)
Q Consensus       135 q~~~-----------~~--i~~-~g~~~-----------------~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~  182 (283)
                      |...           .+  +.. -....                 .........+.+.|+.++..  .+..+.+ ||||+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGek  162 (635)
T PRK11147         85 DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWL  162 (635)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHH
Confidence            2110           00  000 00000                 00000112344566666553  3666666 99999


Q ss_pred             HHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCcccc-cCChH
Q 023354          183 LAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLASA-IGADL  236 (283)
Q Consensus       183 q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~~-~g~~~  236 (283)
                      ||++||++|+ +|.|+|+| ||++.|...         .+..++           ..||+|++++.|.+.. .|...
T Consensus       163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~  239 (635)
T PRK11147        163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYD  239 (635)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHH
Confidence            9999999998 58888888 999976432         111121           5799999999999864 45543

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.70  E-value=3.5e-17  Score=161.58  Aligned_cols=174  Identities=20%  Similarity=0.195  Sum_probs=127.4

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC---C-CcEEEEeecCCCCCHHHHHHhccccCCchH-----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~---~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (283)
                      +..+++++... +|++.||+||.||||||||++|+|....   . |.|.+++..   ......++..|||.|+..     
T Consensus        43 k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~~~~~~s~yV~QdD~l~~~L  119 (613)
T KOG0061|consen   43 KTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSRSFRKISGYVQQDDVLLPTL  119 (613)
T ss_pred             ceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---CchhhhhheeEEEcccccccccc
Confidence            45678888775 4999999999999999999999998763   3 888888733   234567788999999864     


Q ss_pred             ---HHHHhC---CCCCC-ChHHHHHHHHHHHHHccccccCCCccc------CCchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          139 ---RAVETG---GCPHA-AIREDISINLGPLEELSNLFKADLLLC------ESGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       139 ---~~i~~~---g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~------eSgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                         +.+.+.   ..+.. ...+...++.+.+.++++..-.|.+++      -||||++|++||..++ +|.|+++| ||+
T Consensus       120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTS  199 (613)
T KOG0061|consen  120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTS  199 (613)
T ss_pred             cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCC
Confidence               112111   12221 234444577788999998888888886      2999999999999988 58888877 999


Q ss_pred             CCCc-------------hhhcCCc------------ccccCEEEEEcCCcccccCChHHHHhHHHHhhc
Q 023354          204 GDKI-------------PRKGGPG------------ITQADLLVINKTDLASAIGADLAVMERDALRMR  247 (283)
Q Consensus       204 g~~l-------------~~~~~~~------------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~  247 (283)
                      |.|-             .++ +.+            +..-|+++++..|++++.|++.+... ......
T Consensus       200 GLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~-ff~~~G  266 (613)
T KOG0061|consen  200 GLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE-FFSSLG  266 (613)
T ss_pred             CcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH-HHHhCC
Confidence            9752             122 222            36789999999999999998865443 444433

>PLN03140 ABC transporter G family member; Provisional

Probab=99.70  E-value=3.5e-17  Score=174.46  Aligned_cols=168  Identities=15%  Similarity=0.107  Sum_probs=116.0

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHHHhccccCCchH-----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (283)
                      ...++++++.. +|++++|+||||||||||||+|+|+++|    +|+|.+.+.++....   .++.++|++|+..     
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence            34688888885 5999999999999999999999999876    489999887764322   2467999999742     


Q ss_pred             ---HHHHhCC-CCC----------CChHHH---------H---------------HHHHHHHHHccccccCCCcc-----
Q 023354          139 ---RAVETGG-CPH----------AAIRED---------I---------------SINLGPLEELSNLFKADLLL-----  175 (283)
Q Consensus       139 ---~~i~~~g-~~~----------~~~~~~---------~---------------~~~~~~l~~l~~~~~~d~~i-----  175 (283)
                         +.+.++. |..          ...++.         .               ..+...|+.+++.+..+..+     
T Consensus       255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~  334 (1470)
T PLN03140        255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI  334 (1470)
T ss_pred             cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence               2222221 110          000110         0               01234667777765554433     


Q ss_pred             cC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------hhcCCc------------ccccCEEEEEcCC
Q 023354          176 CE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------------RKGGPG------------ITQADLLVINKTD  227 (283)
Q Consensus       176 ~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------~~~~~~------------i~~ad~ivi~K~g  227 (283)
                      .. ||||+||+.||++++ +|.++++| |++|+|..             ...+.+            +..+|+|++++.|
T Consensus       335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G  414 (1470)
T PLN03140        335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG  414 (1470)
T ss_pred             cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence            33 999999999999998 47777777 99997531             111111            2679999999999


Q ss_pred             cccccCChHHHH
Q 023354          228 LASAIGADLAVM  239 (283)
Q Consensus       228 ~i~~~g~~~e~~  239 (283)
                      ++++.|+..++.
T Consensus       415 ~ivy~G~~~~~~  426 (1470)
T PLN03140        415 QIVYQGPRDHIL  426 (1470)
T ss_pred             eEEEeCCHHHHH
Confidence            999999876654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.70  E-value=6.4e-17  Score=173.59  Aligned_cols=154  Identities=16%  Similarity=0.225  Sum_probs=104.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------H
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~  139 (283)
                      .+.+++++|.. +|++++|+|||||||||||++|+|+++|. |+|.+.+             .++|++|++.       +
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~e  505 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKD  505 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHH
Confidence            45789999985 59999999999999999999999999987 9998754             3788888863       2


Q ss_pred             HHHhCCCCCCChHHHHHHHHH------HHHHccccccCCCcccC-----CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          140 AVETGGCPHAAIREDISINLG------PLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~------~l~~l~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                      .+.++. +..  .+....+.+      .+..+.  .+....+++     ||||+||++|||+++ ++.++|+| |+++.|
T Consensus       506 NI~~g~-~~~--~~~~~~~~~~~~L~~~l~~l~--~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD  580 (1490)
T TIGR01271       506 NIIFGL-SYD--EYRYTSVIKACQLEEDIALFP--EKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD  580 (1490)
T ss_pred             HHHhcc-ccc--hHHHHHHHHHHhHHHHHHhcc--ccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            222332 111  111111111      222221  122223333     999999999999998 57777766 999865


Q ss_pred             chh----------h--cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          207 IPR----------K--GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       207 l~~----------~--~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ...          .  .+.+          +..||+|++++.|.+...|+..+...
T Consensus       581 ~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       581 VVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            321          0  0111          25799999999999998888766653

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03073 ABC transporter F family; Provisional

Probab=99.69  E-value=1.6e-16  Score=159.35  Aligned_cols=179  Identities=16%  Similarity=0.110  Sum_probs=112.1

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcc---cCC-CcEEEEeecCCCC--CH----
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFL---RDK-YSLAAVTNDIFTK--ED----  123 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~---~~~-g~i~i~~~d~~~~--~~----  123 (283)
                      +...+.++.|..  ...+++++|... |++++|+|+|||||||||++|+|..   .|. |+|.+...++...  ..    
T Consensus       178 I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v  255 (718)
T PLN03073        178 IHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV  255 (718)
T ss_pred             EEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence            555666666643  348899999865 9999999999999999999999853   354 8998776653211  11    


Q ss_pred             --------HHHHHhccccCCchHHHHH------hC----CCCCCChHHHH----------------HHHHHHHHHcccc-
Q 023354          124 --------GEFLMRNGALPEERIRAVE------TG----GCPHAAIREDI----------------SINLGPLEELSNL-  168 (283)
Q Consensus       124 --------~~~~~~ig~v~q~~~~~i~------~~----g~~~~~~~~~~----------------~~~~~~l~~l~~~-  168 (283)
                              ..+.+.+++++|.+.....      ..    +.+.....+.+                .++...|..++.. 
T Consensus       256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~  335 (718)
T PLN03073        256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP  335 (718)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence                    0112346677665432111      00    00100000111                1222344444443 


Q ss_pred             ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEc
Q 023354          169 FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINK  225 (283)
Q Consensus       169 ~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K  225 (283)
                      ...++.+.+ ||||+||++||++|+ +|.++|+| ||++.|...         +.+.++           ..||+|++++
T Consensus       336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~  415 (718)
T PLN03073        336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLH  415 (718)
T ss_pred             HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            234556666 999999999999998 58888888 999976432         112221           5799999999


Q ss_pred             CCccc-ccCCh
Q 023354          226 TDLAS-AIGAD  235 (283)
Q Consensus       226 ~g~i~-~~g~~  235 (283)
                      .|++. +.|+.
T Consensus       416 ~g~i~~~~g~~  426 (718)
T PLN03073        416 GQKLVTYKGDY  426 (718)
T ss_pred             CCEEEEeCCCH
Confidence            99986 44543

>PTZ00243 ABC transporter; Provisional

Probab=99.69  E-value=6.8e-17  Score=173.72  Aligned_cols=157  Identities=15%  Similarity=0.112  Sum_probs=105.0

Q ss_pred             CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354           68 RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (283)
Q Consensus        68 ~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (283)
                      ..+.+++++|.. +|++++|+|||||||||||++|+|+++|+ |+|.+.             +.++|++|++.       
T Consensus       672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~  738 (1560)
T PTZ00243        672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVR  738 (1560)
T ss_pred             CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHH
Confidence            345788999985 59999999999999999999999999987 988641             46899999863       


Q ss_pred             HHHHhCCCCCCChHHHHHHH------HHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          139 RAVETGGCPHAAIREDISIN------LGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       139 ~~i~~~g~~~~~~~~~~~~~------~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                      +.+.++. +.  ..+....+      .+.++.+  +.....+....+ ||||+||+++||+++ +|.++|+| |+++.|.
T Consensus       739 enI~~~~-~~--~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~  815 (1560)
T PTZ00243        739 GNILFFD-EE--DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA  815 (1560)
T ss_pred             HHHHcCC-hh--hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence            2222221 11  11111111      1122222  111112222233 999999999999998 57777777 9998763


Q ss_pred             hh-----------h-cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          208 PR-----------K-GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       208 ~~-----------~-~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ..           . .+.+          +..||+|++++.|.+.+.|+..+.+.
T Consensus       816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~  870 (1560)
T PTZ00243        816 HVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR  870 (1560)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence            21           0 0111          26799999999999998888776654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.68  E-value=3.1e-16  Score=135.12  Aligned_cols=182  Identities=30%  Similarity=0.408  Sum_probs=121.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~  160 (283)
                      -.+++|+|++|||||||++.++..+....++.+..+++....+....+..|.    . .....+||.||.....+   ..
T Consensus        22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~----~-~~~l~~gcic~~~~~~~---~~   93 (207)
T TIGR00073        22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGA----P-AIQINTGKECHLDAHMV---AH   93 (207)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCC----c-EEEEcCCCcccCChHHH---HH
Confidence            5789999999999999999999865433477788888753334444444442    1 12235678777543332   24


Q ss_pred             HHHHccccccCCCcccCCchH-HHHHHHHHHhc-CCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHH
Q 023354          161 PLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       161 ~l~~l~~~~~~d~~i~eSgGq-~q~~~ia~al~-~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      .+..+.. ..+|.++.|+.|- ..+..+  .+. +..+.++|++.+++........+..++.+++||+|++.......+.
T Consensus        94 ~l~~~~~-~~~d~IiIEt~G~l~~~~~~--~~~~~~~i~Vvd~~~~d~~~~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~  170 (207)
T TIGR00073        94 ALEDLPL-DDIDLLFIENVGNLVCPADF--DLGEHMRVVLLSVTEGDDKPLKYPGMFKEADLIVINKADLAEAVGFDVEK  170 (207)
T ss_pred             HHHHhcc-CCCCEEEEecCCCcCCCccc--ccccCeEEEEEecCcccchhhhhHhHHhhCCEEEEEHHHccccchhhHHH
Confidence            4555433 3569999997771 111111  122 3457889988776544433445678999999999997542223344


Q ss_pred             HhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          239 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       239 ~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      +.+.+.+.++..|++.+|++++.|++++++++...
T Consensus       171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            55556666778999999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=99.68  E-value=6.5e-17  Score=147.54  Aligned_cols=177  Identities=23%  Similarity=0.267  Sum_probs=128.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHH-HhCCCCCCChHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGGCPHAAIREDISINLG  160 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i-~~~g~~~~~~~~~~~~~~~  160 (283)
                      +++.|.|+.|||||||||.|+.... .-+++++.|+++......    -+.+......++ .++||.||++++++-....
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~-g~kiAVIVNEfGEvgID~----~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~   76 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRD-GKKIAVIVNEFGEVGIDG----GALLSDTGEEVVELTNGCICCTVRDDLLPALE   76 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccC-CCcEEEEEecCccccccC----CCccccCCccEEEeCCceEEEeccchhHHHHH
Confidence            5789999999999999999988543 458999999998754210    011111111222 3689999999888766666


Q ss_pred             HHHHccccccCCCcccCCchHHHHHHHHHHhc-----------CCcEEEEeCCCCCC----chhhcCCcccccCEEEEEc
Q 023354          161 PLEELSNLFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDK----IPRKGGPGITQADLLVINK  225 (283)
Q Consensus       161 ~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-----------~~~l~llDpt~g~~----l~~~~~~~i~~ad~ivi~K  225 (283)
                      .|..  ++..+|++++|+.|-.-+..++.++.           +++|.|+|+.....    +......|+.+||+|++||
T Consensus        77 ~L~~--~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK  154 (323)
T COG0523          77 RLLR--RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNK  154 (323)
T ss_pred             HHHh--ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEec
Confidence            6655  34559999999999877666665542           36899999877532    3344566889999999999


Q ss_pred             CCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354          226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN  268 (283)
Q Consensus       226 ~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~  268 (283)
                      .|++...  ..+.++..+.+.+|.++++..+. ......+++.
T Consensus       155 ~Dlv~~~--~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         155 TDLVDAE--ELEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             ccCCCHH--HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence            9999874  47788889999999999999886 4444444443

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.67  E-value=2.3e-16  Score=152.53  Aligned_cols=159  Identities=17%  Similarity=0.135  Sum_probs=101.8

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      ..+..|  ...+.+.++++.- +|++|||+|+||||||||||+|+|.+.|+ |.|....+           .+++|++|+
T Consensus         8 ~ls~~~--g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~l~Q~   74 (530)
T COG0488           8 NLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGYLSQE   74 (530)
T ss_pred             eeEEee--CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEEeCCC
Confidence            344444  3445778888874 59999999999999999999999999887 88876543           246666665


Q ss_pred             hH--------HHHHhCCCCCCChHHH-------------------------------HHHHHHHHHHccccccCCCcccC
Q 023354          137 RI--------RAVETGGCPHAAIRED-------------------------------ISINLGPLEELSNLFKADLLLCE  177 (283)
Q Consensus       137 ~~--------~~i~~~g~~~~~~~~~-------------------------------~~~~~~~l~~l~~~~~~d~~i~e  177 (283)
                      +.        .++..+..........                               -.++...|..++.... +.++.+
T Consensus        75 ~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~  153 (530)
T COG0488          75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS  153 (530)
T ss_pred             CCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh
Confidence            42        1111110000000000                               0122234444544444 777777


Q ss_pred             -CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---------hcCCcc-----------cccCEEEEEcCCcccc
Q 023354          178 -SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---------KGGPGI-----------TQADLLVINKTDLASA  231 (283)
Q Consensus       178 -SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~~  231 (283)
                       ||||+.|+++|++|. +|-++|+| ||+.+|+..         .+..++           ..|.+|+-+..|.+..
T Consensus       154 LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~  230 (530)
T COG0488         154 LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTP  230 (530)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeE
Confidence             999999999999998 48888888 999877532         111121           5677777777776644

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.67  E-value=2.3e-16  Score=137.92  Aligned_cols=188  Identities=26%  Similarity=0.319  Sum_probs=118.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChH-----
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR-----  152 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~-----  152 (283)
                      .+..++||.||+|||||||+..|...+... -+|.+...|+....      .=|.+..+..++......+..+++     
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~------tGGAlLGDRiRM~~~~~d~~vfIRS~atR  100 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF------TGGALLGDRIRMQELSRDPGVFIRSMATR  100 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC------C---SS--GGGCHHHHTSTTEEEEEE---
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC------CCCcccccHHHhcCcCCCCCEEEeecCcC
Confidence            356799999999999999999999988766 58999999886421      123444555555544333333221     


Q ss_pred             ----HHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCc
Q 023354          153 ----EDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL  228 (283)
Q Consensus       153 ----~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~  228 (283)
                          .....+.+.+.-+ ...++|.++.|+.|.-|--.-...++|..++++-|-.|++++....-.+++||.+|+||.|+
T Consensus       101 G~lGGls~~t~~~v~ll-~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~  179 (266)
T PF03308_consen  101 GSLGGLSRATRDAVRLL-DAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADR  179 (266)
T ss_dssp             SSHHHHHHHHHHHHHHH-HHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SH
T ss_pred             CCCCCccHhHHHHHHHH-HHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCCh
Confidence                1111222333322 45689999999887766654445678999999999999999876666789999999999996


Q ss_pred             ccccCChHHHHhHHHHhhcC------CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          229 ASAIGADLAVMERDALRMRD------GGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       229 i~~~g~~~e~~~~~~~~~~~------~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      -.+.....+ +. ..+....      ..|++.+|+.++.|+++|++.|.+...
T Consensus       180 ~gA~~~~~~-l~-~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  180 PGADRTVRD-LR-SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             HHHHHHHHH-HH-HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HH-HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            554221211 11 2222222      247899999999999999999998654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=2.3e-16  Score=164.12  Aligned_cols=171  Identities=20%  Similarity=0.211  Sum_probs=114.4

Q ss_pred             cccccCCCCCCC-CCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           55 SHEPIYSPGYFS-RRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      +...+.++.... +..+.+++++|..+ |+.++|+|+.||||||||.+|+|.++.. |.+.+.+.             ++
T Consensus       519 i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------ia  585 (1381)
T KOG0054|consen  519 IEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VA  585 (1381)
T ss_pred             EEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EE
Confidence            444444444332 34458999999855 9999999999999999999999999876 98887663             78


Q ss_pred             ccCCchHHH------HHhCCCCCCChHHHHHHHHHHH---HHccc-cccCCCcccC-----CchHHHHHHHHHHhcC-Cc
Q 023354          132 ALPEERIRA------VETGGCPHAAIREDISINLGPL---EELSN-LFKADLLLCE-----SGGDNLAANFSRELAD-YI  195 (283)
Q Consensus       132 ~v~q~~~~~------i~~~g~~~~~~~~~~~~~~~~l---~~l~~-~~~~d~~i~e-----SgGq~q~~~ia~al~~-~~  195 (283)
                      |+||.+..+      +.+-|.+..  ++....+.++.   .++.. ..+-...++|     |||||||+++|||+-+ ..
T Consensus       586 Yv~Q~pWI~ngTvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ad  663 (1381)
T KOG0054|consen  586 YVPQQPWIQNGTVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDAD  663 (1381)
T ss_pred             EeccccHhhCCcHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCC
Confidence            999988522      222233322  22222333321   11111 1233444566     9999999999999984 55


Q ss_pred             EEEEe-CCCCCCc------hhhc------CC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          196 IYIID-VSGGDKI------PRKG------GP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       196 l~llD-pt~g~~l------~~~~------~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |+++| |.+..|-      -++.      ++          -++.||.|+++|.|++.+.|+-.+.++
T Consensus       664 IYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  664 IYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             EEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence            55555 9886431      1110      01          137899999999999999999887774

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=3.2e-16  Score=130.25  Aligned_cols=133  Identities=19%  Similarity=0.192  Sum_probs=94.9

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH--HHHHHhccccCCchH-----HH
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED--GEFLMRNGALPEERI-----RA  140 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~--~~~~~~ig~v~q~~~-----~~  140 (283)
                      ..+.+.+|.-. |+.+.|.|||||||||||++|+|+++|+ |+|.+.+..+.....  .+.+--+|-.+.-..     +.
T Consensus        16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~EN   95 (209)
T COG4133          16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALEN   95 (209)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHH
Confidence            45678888854 9999999999999999999999999998 999998877765432  122222332221110     11


Q ss_pred             H----HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCch
Q 023354          141 V----ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIP  208 (283)
Q Consensus       141 i----~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~  208 (283)
                      +    .+.++      .....+.++++.+++....|.++.. |.||++|+++||-.+. ..+.++| |+++.|..
T Consensus        96 L~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~  164 (209)
T COG4133          96 LHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE  164 (209)
T ss_pred             HHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH
Confidence            1    12222      0112456788999999999999988 9999999999998774 6777777 99886643

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.65  E-value=3.9e-16  Score=127.99  Aligned_cols=138  Identities=20%  Similarity=0.189  Sum_probs=89.4

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec----CCCCCHHH----HHHhccccCCchH
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND----IFTKEDGE----FLMRNGALPEERI  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d----~~~~~~~~----~~~~ig~v~q~~~  138 (283)
                      -+.+.+++|+.+ ||++++-||+||||||||++|.+-|.|+ |+|.+--..    +.+..+++    +++.+|||.|.--
T Consensus        24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR  103 (235)
T COG4778          24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR  103 (235)
T ss_pred             eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence            367889999866 9999999999999999999999999988 998775432    22333433    2446999988521


Q ss_pred             --------HHHHhCCCCCCChHHHH-HHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCC
Q 023354          139 --------RAVETGGCPHAAIREDI-SINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGD  205 (283)
Q Consensus       139 --------~~i~~~g~~~~~~~~~~-~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~  205 (283)
                              +++.-+.......++.. ..+...|..+.... ...+.... |||++||+.|||.++ |..|+++| ||...
T Consensus       104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL  183 (235)
T COG4778         104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL  183 (235)
T ss_pred             hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence                    11110000000011111 23444566665443 23444555 999999999999987 65555555 98865


Q ss_pred             C
Q 023354          206 K  206 (283)
Q Consensus       206 ~  206 (283)
                      |
T Consensus       184 D  184 (235)
T COG4778         184 D  184 (235)
T ss_pred             c
Confidence            4

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.64  E-value=3.3e-15  Score=132.35  Aligned_cols=192  Identities=23%  Similarity=0.249  Sum_probs=132.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChH-----
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIR-----  152 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~-----  152 (283)
                      .+..++||.|++|||||||+..|...+...| +|.++..|+....      .-|.+..+..++..+...+..+++     
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~------TGGsiLGDRiRM~~~~~~~~vFiRs~~sr  122 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF------TGGSILGDRIRMQRLAVDPGVFIRSSPSR  122 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC------CCccccccHhhHHhhccCCCeEEeecCCC
Confidence            3456999999999999999999999887765 6999999987532      234444555555544333322211     


Q ss_pred             ----HHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCc
Q 023354          153 ----EDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL  228 (283)
Q Consensus       153 ----~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~  228 (283)
                          ..-....+.+.-| ...++|.+++|+.|--|--.-...++|..++|+=|..|++++......++++|++++||.|+
T Consensus       123 G~lGGlS~at~~~i~~l-dAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~  201 (323)
T COG1703         123 GTLGGLSRATREAIKLL-DAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADR  201 (323)
T ss_pred             ccchhhhHHHHHHHHHH-HhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccCh
Confidence                1111223333333 56689999999888777655555678888999989999999887667789999999999996


Q ss_pred             ccccCChHHHHhHHHHh-----hcCC-CCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          229 ASAIGADLAVMERDALR-----MRDG-GPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       229 i~~~g~~~e~~~~~~~~-----~~~~-~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      -.+.....++....-+.     ...| .|++.+|+.+|+|+++|++.+...++..
T Consensus       202 ~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         202 KGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            54432222222211111     1223 4678999999999999999999877543

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.64  E-value=5.4e-16  Score=141.60  Aligned_cols=144  Identities=15%  Similarity=0.024  Sum_probs=102.6

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      -++++++-+.|++.. --+..+|+..+ |++|.|+|.||||||||+++|+|+++|+ |+|.++++.+......+.|+-++
T Consensus       322 ~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS  400 (546)
T COG4615         322 TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS  400 (546)
T ss_pred             ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence            467788888887754 45677788755 9999999999999999999999999998 99999999998777777888788


Q ss_pred             ccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccc---cCCCcccC---CchHHHHHHHHHHhcC-CcEEEEeC
Q 023354          132 ALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF---KADLLLCE---SGGDNLAANFSRELAD-YIIYIIDV  201 (283)
Q Consensus       132 ~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~---~~d~~i~e---SgGq~q~~~ia~al~~-~~l~llDp  201 (283)
                      .|+.+...+-.+-+-......+.+   ...|+.+...+   ..|..+..   |.|||+|+++..|++. ..|+|+|.
T Consensus       401 avFsDyhLF~~ll~~e~~as~q~i---~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DE  474 (546)
T COG4615         401 AVFSDYHLFDQLLGPEGKASPQLI---EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDE  474 (546)
T ss_pred             HHhhhHhhhHhhhCCccCCChHHH---HHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeeh
Confidence            777765444443222221122222   33444443333   22322222   9999999999999884 66777773

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=99.63  E-value=1.5e-16  Score=134.05  Aligned_cols=163  Identities=26%  Similarity=0.365  Sum_probs=109.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCC-HHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~  160 (283)
                      +++.|.|+.||||||||+.++.......++.++.++++... |.++.+..|..     ..-..+||.||+.+.++.   .
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~-----v~~l~~gcicc~~~~~~~---~   72 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVP-----VVELNNGCICCTLRDDLV---E   72 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-E-----EEEECTTTESS-TTS-HH---H
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceE-----EEEecCCCcccccHHHHH---H
Confidence            47899999999999999999983334479999999998654 55555544321     011257899998665553   4


Q ss_pred             HHHHccccc--cCCCcccCCchHHHHHHHH---HHh-----cCCcEEEEeCCCC---CCchhhcCCcccccCEEEEEcCC
Q 023354          161 PLEELSNLF--KADLLLCESGGDNLAANFS---REL-----ADYIIYIIDVSGG---DKIPRKGGPGITQADLLVINKTD  227 (283)
Q Consensus       161 ~l~~l~~~~--~~d~~i~eSgGq~q~~~ia---~al-----~~~~l~llDpt~g---~~l~~~~~~~i~~ad~ivi~K~g  227 (283)
                      .+..+....  .+|++++|+.|......++   ..+     .+..|.++|+.+.   .+.......++++||.|++||+|
T Consensus        73 ~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~D  152 (178)
T PF02492_consen   73 ALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKID  152 (178)
T ss_dssp             HHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-GG
T ss_pred             HHHHHHHhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEeccc
Confidence            556665555  7999999977766555542   111     2478999999664   33334445678999999999999


Q ss_pred             cccccCChHHHHhHHHHhhcCCCCeE
Q 023354          228 LASAIGADLAVMERDALRMRDGGPFI  253 (283)
Q Consensus       228 ~i~~~g~~~e~~~~~~~~~~~~~~i~  253 (283)
                      ++... ...+.+.+.+++.+|.++++
T Consensus       153 ~~~~~-~~i~~~~~~ir~lnp~a~Iv  177 (178)
T PF02492_consen  153 LVSDE-QKIERVREMIRELNPKAPIV  177 (178)
T ss_dssp             GHHHH---HHHHHHHHHHH-TTSEEE
T ss_pred             cCChh-hHHHHHHHHHHHHCCCCEEe
Confidence            99874 23477888899999999886

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.61  E-value=1.5e-15  Score=122.16  Aligned_cols=134  Identities=16%  Similarity=0.083  Sum_probs=98.8

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCC
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGG  145 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g  145 (283)
                      .+.+++|+. +|+++.|+||+|||||||+.-+.|.+.+    +|++.+.+.++...+..  .+.+|+++|++..+-.+..
T Consensus        17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq~GiLFQD~lLFphlsV   94 (213)
T COG4136          17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSV   94 (213)
T ss_pred             EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhheeeeeccccccccccc
Confidence            456788885 5999999999999999999999998875    38888888887765543  4789999999764432211


Q ss_pred             CCC------CChHH--HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          146 CPH------AAIRE--DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       146 ~~~------~~~~~--~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                      ..+      .+++.  ....+..+|++.++...++..... ||||+-|+++-|+|. .|..+++| |.+..|
T Consensus        95 g~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD  166 (213)
T COG4136          95 GQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD  166 (213)
T ss_pred             ccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHH
Confidence            100      11222  222455688888877777666655 999999999999987 68888888 877644

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.60  E-value=6.6e-16  Score=134.96  Aligned_cols=75  Identities=21%  Similarity=0.247  Sum_probs=52.1

Q ss_pred             HHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-C--cEEEEe-CCCCCCchh------------hcCCc------
Q 023354          159 LGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-Y--IIYIID-VSGGDKIPR------------KGGPG------  214 (283)
Q Consensus       159 ~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~--~l~llD-pt~g~~l~~------------~~~~~------  214 (283)
                      .+.|+.+.+.. ..+..+.+ |+||+||+.+|++++. |  .++++| |+++.|...            +.+.+      
T Consensus       118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH  197 (226)
T cd03270         118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH  197 (226)
T ss_pred             HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            45677776655 35666666 9999999999999984 5  477777 999865321            11111      


Q ss_pred             ----ccccCEEEEE------cCCcccccC
Q 023354          215 ----ITQADLLVIN------KTDLASAIG  233 (283)
Q Consensus       215 ----i~~ad~ivi~------K~g~i~~~g  233 (283)
                          +.+||+++++      +.|+++++|
T Consensus       198 ~~~~~~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             CHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence                2678999999      777776643

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.59  E-value=1.5e-15  Score=146.89  Aligned_cols=141  Identities=18%  Similarity=0.148  Sum_probs=99.2

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .....+.+++++|.+. ...+.+.+|.. +|++|+|+||||+|||||||+|+|.+.|. |.|.+-..           -+
T Consensus       319 ~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~  386 (530)
T COG0488         319 KLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK  386 (530)
T ss_pred             CeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence            3447778888888766 56778899986 59999999999999999999999988887 87765332           24


Q ss_pred             ccccCCchHHHH------H--hCCCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-CcEEE
Q 023354          130 NGALPEERIRAV------E--TGGCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-YIIYI  198 (283)
Q Consensus       130 ig~v~q~~~~~i------~--~~g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~~l~l  198 (283)
                      +||+.|+.....      +  ...++...    ...+...|..|.... ....++.. ||||+.|+.+|+.+.. |.|+|
T Consensus       387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~----e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi  462 (530)
T COG0488         387 IGYFDQHRDELDPDKTVLEELSEGFPDGD----EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL  462 (530)
T ss_pred             EEEEEehhhhcCccCcHHHHHHhhCcccc----HHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence            777777652211      0  00111000    123445667665543 23445554 9999999999999885 88888


Q ss_pred             Ee-CCCCCCch
Q 023354          199 ID-VSGGDKIP  208 (283)
Q Consensus       199 lD-pt~g~~l~  208 (283)
                      +| ||+.+|+.
T Consensus       463 LDEPTNhLDi~  473 (530)
T COG0488         463 LDEPTNHLDIE  473 (530)
T ss_pred             EcCCCccCCHH
Confidence            88 99988764

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=99.56  E-value=3e-14  Score=131.55  Aligned_cols=181  Identities=21%  Similarity=0.242  Sum_probs=123.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHHHhccccCCchHHHH-HhCCCCCCChHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAV-ETGGCPHAAIREDIS  156 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i-~~~g~~~~~~~~~~~  156 (283)
                      +-+++.|.|+.|||||||||.++..  +. .++.++.++++... |..+.+..+........++ ..+||.||+.+.++.
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~   80 (341)
T TIGR02475         3 KIPVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFI   80 (341)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence            3478999999999999999999874  33 58999999998764 5555554332110001122 368999999887765


Q ss_pred             HHHHHHHHcc-ccccCCCcccCCchHHHHHHHHHHhc----------CCcEEEEeCCCCCC------c------------
Q 023354          157 INLGPLEELS-NLFKADLLLCESGGDNLAANFSRELA----------DYIIYIIDVSGGDK------I------------  207 (283)
Q Consensus       157 ~~~~~l~~l~-~~~~~d~~i~eSgGq~q~~~ia~al~----------~~~l~llDpt~g~~------l------------  207 (283)
                      .   .|..+. ....+|++++|+.|......++..+.          +.+|.++|+.+...      .            
T Consensus        81 ~---~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~  157 (341)
T TIGR02475        81 P---TMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDN  157 (341)
T ss_pred             H---HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccc
Confidence            4   344432 24579999999999888888887763          35789999875421      0            


Q ss_pred             -------hhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC-CCeEEEEeccCCCHHHHHH
Q 023354          208 -------PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDG-GPFIFAQVKHGLGVEEIVN  268 (283)
Q Consensus       208 -------~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~-~~i~~isa~~g~gi~~l~~  268 (283)
                             ......|+.+||+|++||.|++.+  ...+.+.+.+...++. ++++.++. .......|++
T Consensus       158 ~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~--~~l~~~~~~l~~~~~~~a~i~~~~~-~~v~~~~ll~  223 (341)
T TIGR02475       158 LDHETPLEELFEDQLACADLVILNKADLLDA--AGLARVRAEIAAELPRAVKIVEASH-GEVDARVLLG  223 (341)
T ss_pred             ccccchHHHHHHHHHHhCCEEEEeccccCCH--HHHHHHHHHHHHhCCCCCEEEEccc-CCCCHHHHhC
Confidence                   011134679999999999999876  4566667777776764 46766542 3344555544

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.55  E-value=8.1e-15  Score=138.33  Aligned_cols=142  Identities=15%  Similarity=0.148  Sum_probs=101.0

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      ++.+.+.+++|+|.++. ......+|... +..++++||||+|||||||+++|.+.|. |.+..-.....          
T Consensus       387 ~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~----------  455 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL----------  455 (614)
T ss_pred             CCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccc----------
Confidence            56788999999998877 66788999866 9999999999999999999999999997 87764333221          


Q ss_pred             ccccCCchHHHHH---------hCCCCCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354          130 NGALPEERIRAVE---------TGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (283)
Q Consensus       130 ig~v~q~~~~~i~---------~~g~~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~l~  197 (283)
                       ++..|...+..+         ..-++.   ....+.+...|..+++... .+.++.. |+||+.||.+|+... +|.++
T Consensus       456 -~~y~Qh~~e~ldl~~s~le~~~~~~~~---~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL  531 (614)
T KOG0927|consen  456 -PRYNQHLAEQLDLDKSSLEFMMPKFPD---EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL  531 (614)
T ss_pred             -hhhhhhhHhhcCcchhHHHHHHHhccc---cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence             111222111111         111111   1223345567888888754 4555555 999999999999877 58888


Q ss_pred             EEe-CCCCCCch
Q 023354          198 IID-VSGGDKIP  208 (283)
Q Consensus       198 llD-pt~g~~l~  208 (283)
                      ||| ||++.|+.
T Consensus       532 lLDEPtnhLDi~  543 (614)
T KOG0927|consen  532 LLDEPTNHLDIE  543 (614)
T ss_pred             EecCCCcCCCch
Confidence            888 99998764

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=99.54  E-value=1.8e-14  Score=131.87  Aligned_cols=167  Identities=19%  Similarity=0.252  Sum_probs=117.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCC-HHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~  158 (283)
                      +-+++.|.|+.|||||||||.|+.. ....++.++.++++... |..+....+.     ...-..+||.||+.+.++...
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~-~~~~riaVi~NEfG~v~iD~~ll~~~~~-----~v~eL~~GCiCCs~~~~l~~~   76 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRAT-----QIKTLTNGCICCSRSNELEDA   76 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhc-ccCCcccccccCcCCccccHHHHhCcCc-----eEEEECCCEEEEccCchHHHH
Confidence            4578999999999999999999864 22358999999998653 4444432110     011235799999988776643


Q ss_pred             HHHH-HHccc-cccCCCcccCCchHHHHHHHHHHhc-----------CCcEEEEeCCCCCCchh---hcCCcccccCEEE
Q 023354          159 LGPL-EELSN-LFKADLLLCESGGDNLAANFSRELA-----------DYIIYIIDVSGGDKIPR---KGGPGITQADLLV  222 (283)
Q Consensus       159 ~~~l-~~l~~-~~~~d~~i~eSgGq~q~~~ia~al~-----------~~~l~llDpt~g~~l~~---~~~~~i~~ad~iv  222 (283)
                      +..+ ..+.. ...+|++++|+.|......++..+.           +.+|.++|+.++.....   ....|+.+||+|+
T Consensus        77 l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Iv  156 (318)
T PRK11537         77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  156 (318)
T ss_pred             HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEE
Confidence            3333 22221 1368999999999887777776651           46899999887643222   1234689999999


Q ss_pred             EEcCCcccccCChHHHHhHHHHhhcCCCCeEEEE
Q 023354          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQ  256 (283)
Q Consensus       223 i~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~is  256 (283)
                      +||.|++.+    .+.+.+.+...+|.++++.++
T Consensus       157 lnK~Dl~~~----~~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        157 LTKTDVAGE----AEKLRERLARINARAPVYTVV  186 (318)
T ss_pred             EeccccCCH----HHHHHHHHHHhCCCCEEEEec
Confidence            999998864    256777888899999998765

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.54  E-value=3.9e-15  Score=127.44  Aligned_cols=113  Identities=15%  Similarity=0.066  Sum_probs=73.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC----------CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK----------YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA  149 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~----------g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~  149 (283)
                      +| +++|+||||||||||+++|++++.+.          +.+.+.+.+...   ....+.++++||++..+  ++..   
T Consensus        22 ~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~--~~~~---   92 (197)
T cd03278          22 PG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR--YSII---   92 (197)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc--eeEE---
Confidence            36 99999999999999999999987543          234443433322   12346799999987544  1110   


Q ss_pred             ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc----C-CcEEEEe-CCCCCCch
Q 023354          150 AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA----D-YIIYIID-VSGGDKIP  208 (283)
Q Consensus       150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~----~-~~l~llD-pt~g~~l~  208 (283)
                       ..   ..+.+.++.   ....+..+.+ |+||+||+++|++++    . +.++++| |+++.+..
T Consensus        93 -~~---~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~  151 (197)
T cd03278          93 -SQ---GDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDA  151 (197)
T ss_pred             -eh---hhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHH
Confidence             11   122334443   2334555555 999999999999875    3 4677777 99987654

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.51  E-value=1.3e-13  Score=125.41  Aligned_cols=200  Identities=21%  Similarity=0.188  Sum_probs=119.9

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-HHHHH---HhccccCCchHHHHH-h
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-DGEFL---MRNGALPEERIRAVE-T  143 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-~~~~~---~~ig~v~q~~~~~i~-~  143 (283)
                      .+.++.+.. ++.+++|+|++|||||||++.|+..+... .++.++..|+.... ...+.   .++.....++..++. +
T Consensus        23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (300)
T TIGR00750        23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSM  102 (300)
T ss_pred             HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeec
Confidence            455555543 48999999999999999999999987765 68888888875421 11110   011111111110111 1


Q ss_pred             CCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEE
Q 023354          144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVI  223 (283)
Q Consensus       144 ~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi  223 (283)
                      ++...  .........+.++.+ ....+|.+++|+.|-.+...-....+|..+++.+|..+.++..........++.+++
T Consensus       103 ~~~~~--~~~~~~~~~~~~~~l-~~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~  179 (300)
T TIGR00750       103 PTRGH--LGGLSQATRELILLL-DAAGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVV  179 (300)
T ss_pred             Ccccc--ccchhHHHHHHHHHH-HhCCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEE
Confidence            11000  000111222333333 346899999997776655444445567777777788887765543334577899999


Q ss_pred             EcCCcccccCChHHHHh----HHHH---hh--cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          224 NKTDLASAIGADLAVME----RDAL---RM--RDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       224 ~K~g~i~~~g~~~e~~~----~~~~---~~--~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ||.|+.....  .....    ..+.   ..  ....+++.+|++++.|++++++++...+.
T Consensus       180 NK~Dl~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       180 NKADGEGATN--VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             EcccccchhH--HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            9999875522  11111    1111   11  11246899999999999999999988654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.47  E-value=3.7e-14  Score=122.77  Aligned_cols=132  Identities=17%  Similarity=0.015  Sum_probs=71.0

Q ss_pred             ccccccC--CCcEEEEEcCCCCcHHHHHHHHHhcc-cCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC
Q 023354           73 LSRNFNE--RAFTVGIGGPVGTGKTALMLALCKFL-RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (283)
Q Consensus        73 ~~~~~~~--~g~~v~ilG~nGsGKSTLl~~L~g~~-~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~  148 (283)
                      +.++|..  +|++++|+||||||||||+++|++.+ .+. +..... .........+....+++++|.............
T Consensus        18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~g   96 (213)
T cd03279          18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRG   96 (213)
T ss_pred             eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECCeEEEEEEecC
Confidence            4445542  38899999999999999999999643 222 222211 000111112223457777766421111111111


Q ss_pred             CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-----------CCcEEEEe-CCCCCCc
Q 023354          149 AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-----------DYIIYIID-VSGGDKI  207 (283)
Q Consensus       149 ~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-----------~~~l~llD-pt~g~~l  207 (283)
                      .. .+.+... ..+.........+..+.. |+||+||+++|++++           +|.++++| |+++.+.
T Consensus        97 l~-~~~~~~~-~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~  166 (213)
T cd03279          97 LD-YDQFTRI-VLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDP  166 (213)
T ss_pred             CC-HHHHHHh-hhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCH
Confidence            11 1111110 012222122333555555 999999999999996           34577777 9998654

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.47  E-value=2.1e-13  Score=121.45  Aligned_cols=77  Identities=23%  Similarity=0.294  Sum_probs=54.3

Q ss_pred             HHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchhh------------cCCc----
Q 023354          158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPRK------------GGPG----  214 (283)
Q Consensus       158 ~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~~------------~~~~----  214 (283)
                      ..+.|+.+++.+ ..+..+.+ |+||+||+.+|++++.    +.++++| |+++.+....            .+.+    
T Consensus       149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIii  228 (261)
T cd03271         149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI  228 (261)
T ss_pred             HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            345666676655 35666666 9999999999999985    5788887 9999653211            1111    


Q ss_pred             ------ccccCEEEEE------cCCcccccCC
Q 023354          215 ------ITQADLLVIN------KTDLASAIGA  234 (283)
Q Consensus       215 ------i~~ad~ivi~------K~g~i~~~g~  234 (283)
                            +..||+++.+      +.|++++.|+
T Consensus       229 tH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt  260 (261)
T cd03271         229 EHNLDVIKCADWIIDLGPEGGDGGGQVVASGT  260 (261)
T ss_pred             eCCHHHHHhCCEEEEecCCcCCCCCEEEEeCC
Confidence                  2578999999      7888887664

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=99.47  E-value=1.6e-13  Score=121.20  Aligned_cols=177  Identities=23%  Similarity=0.257  Sum_probs=123.1

Q ss_pred             CcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHH--HHHh--ccccCCchHHHHH-hCC
Q 023354           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE--FLMR--NGALPEERIRAVE-TGG  145 (283)
Q Consensus        71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~--~~~~--ig~v~q~~~~~i~-~~g  145 (283)
                      .........+-++..|.|+.|||||||||.|+.- +...+|+++-++++...+-+  +...  .|-+.   .+.+. -+|
T Consensus        47 ~~~~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~-~hgKRIAVIlNEfGes~die~sl~~~~~gg~ly---Eewv~L~NG  122 (391)
T KOG2743|consen   47 VVTKSSLGARIPVTIITGYLGAGKTTLLNYILTG-QHGKRIAVILNEFGESSDIEKSLAVSQEGGELY---EEWVELRNG  122 (391)
T ss_pred             cccccCCCCccceEEEEecccCChHHHHHHHHcc-CCCceEEEEhhhcccchhhhHHHHhccccchHH---HHHHHhcCC
Confidence            3455666677889999999999999999999762 12258999999998644322  1111  11111   13343 579


Q ss_pred             CCCCChHHHHHHHHHHHHHcc-ccccCCCcccCCchHHHHHHHHHHh-----------cCCcEEEEeCCCCCCc----h-
Q 023354          146 CPHAAIREDISINLGPLEELS-NLFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKI----P-  208 (283)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~l~-~~~~~d~~i~eSgGq~q~~~ia~al-----------~~~~l~llDpt~g~~l----~-  208 (283)
                      |.||+++.+.-+   +++++. .+..+|.++.|+.|-.-+..+|..+           +|.+|.++|....+..    . 
T Consensus       123 ClCCtVk~~gvr---aie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~  199 (391)
T KOG2743|consen  123 CLCCTVKDNGVR---AIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKP  199 (391)
T ss_pred             eEEEEecchHHH---HHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCc
Confidence            999998877644   344433 4457899999999989888888765           2478999998765321    1 


Q ss_pred             ----hhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEE
Q 023354          209 ----RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ  256 (283)
Q Consensus       209 ----~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~is  256 (283)
                          .+...++.+||+|++||.|++..  +....+.+.+++.+.-++++++.
T Consensus       200 ~g~i~EA~~QiA~AD~II~NKtDli~~--e~~~~l~q~I~~INslA~m~~Tk  249 (391)
T KOG2743|consen  200 DGLINEATRQIALADRIIMNKTDLVSE--EEVKKLRQRIRSINSLAQMIETK  249 (391)
T ss_pred             ccchHHHHHHHhhhheeeeccccccCH--HHHHHHHHHHHHhhhHHHhhhhh
Confidence                11223679999999999999987  56666777788877777766543

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.45  E-value=7.8e-13  Score=125.87  Aligned_cols=162  Identities=19%  Similarity=0.219  Sum_probs=115.1

Q ss_pred             CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhccccCCchH---------
Q 023354           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNGALPEERI---------  138 (283)
Q Consensus        71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig~v~q~~~---------  138 (283)
                      .+.+++|.-+ ||++||.|-.|||+|-|+++|.|..++. |+|.+++.++...++. .+...++|||.+.-         
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s  353 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS  353 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence            3567788854 9999999999999999999999977766 9999999988766655 45557999998752         


Q ss_pred             --HHHHhC---CCC---CCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          139 --RAVETG---GCP---HAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       139 --~~i~~~---g~~---~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                        ..+.+.   ...   ....+.....+......+..+. ..+..+.. |||.+|++.||+.|+ +|.|+++| ||.|-|
T Consensus       354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID  433 (500)
T COG1129         354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID  433 (500)
T ss_pred             HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence              111111   111   1111222223445566665554 34566666 999999999999998 68888888 999966


Q ss_pred             chhhc------------CCc-----------ccccCEEEEEcCCccccc
Q 023354          207 IPRKG------------GPG-----------ITQADLLVINKTDLASAI  232 (283)
Q Consensus       207 l~~~~------------~~~-----------i~~ad~ivi~K~g~i~~~  232 (283)
                      +-.+.            +..           +..||||++++.|++...
T Consensus       434 VGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e  482 (500)
T COG1129         434 VGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE  482 (500)
T ss_pred             cchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEE
Confidence            43221            111           378999999999999874

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.43  E-value=2.6e-13  Score=119.44  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=27.4

Q ss_pred             cccC-CchHHHHHHHHHHhc----C-CcEEEEe-CCCCCCch
Q 023354          174 LLCE-SGGDNLAANFSRELA----D-YIIYIID-VSGGDKIP  208 (283)
Q Consensus       174 ~i~e-SgGq~q~~~ia~al~----~-~~l~llD-pt~g~~l~  208 (283)
                      .+.+ |+||+||+++|++++    + +.++++| |+++.+..
T Consensus       155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~  196 (243)
T cd03272         155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQ  196 (243)
T ss_pred             cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHH
Confidence            3344 999999999999995    3 6677777 99987653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1159 Era GTPase [General function prediction only]

Probab=99.41  E-value=9.8e-13  Score=116.81  Aligned_cols=162  Identities=21%  Similarity=0.176  Sum_probs=104.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCC--chHHHHHhCCCCCCChHHHHHHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE--ERIRAVETGGCPHAAIREDISIN  158 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q--~~~~~i~~~g~~~~~~~~~~~~~  158 (283)
                      .-+|+|+|++++|||||+|.|+|.     ++++....+.+++.    +-.|.+..  ..+.+++|+|.....  .     
T Consensus         6 sGfVaIiGrPNvGKSTLlN~l~G~-----KisIvS~k~QTTR~----~I~GI~t~~~~QiIfvDTPGih~pk--~-----   69 (298)
T COG1159           6 SGFVAIIGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRN----RIRGIVTTDNAQIIFVDTPGIHKPK--H-----   69 (298)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhcC-----ceEeecCCcchhhh----heeEEEEcCCceEEEEeCCCCCCcc--h-----
Confidence            347999999999999999999996     78888777766432    22344432  234577888874431  1     


Q ss_pred             HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchh----hcCCcccccCEEEEEcCCcccccCC
Q 023354          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~----~~~~~i~~ad~ivi~K~g~i~~~g~  234 (283)
                        .|.++.               .+.+.-+..-+|.+++++|++.+.....    +..........+++||.|++...- 
T Consensus        70 --~l~~~m---------------~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~-  131 (298)
T COG1159          70 --ALGELM---------------NKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKT-  131 (298)
T ss_pred             --HHHHHH---------------HHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHH-
Confidence              111110               1112222223468899999776421111    100112456799999999987621 


Q ss_pred             hHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          235 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       235 ~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ....+.+......+..+++++||++|.+++.|.+.+...+++
T Consensus       132 ~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         132 VLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             HHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            123445566667777899999999999999999999987643

>PRK15494 era GTPase Era; Provisional

Probab=99.40  E-value=1.7e-12  Score=119.99  Aligned_cols=194  Identities=15%  Similarity=0.122  Sum_probs=113.1

Q ss_pred             ccCCCCCCCccccccCCCCCCCCCCCCcccccccCC-Cc-------EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEee
Q 023354           45 YHSHDGLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AF-------TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN  116 (283)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~-------~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~  116 (283)
                      +..++...|.+++..+.+.|+ ...+++....+..+ |+       .++|+|++|+|||||+|.|+|.     ++.+...
T Consensus         9 ~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~-----k~~ivs~   82 (339)
T PRK15494          9 FAYREEFKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE-----KLSIVTP   82 (339)
T ss_pred             cccchhhCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC-----ceeeccC
Confidence            444667789999999999999 55677877777644 77       9999999999999999999884     2222222


Q ss_pred             cCCCCCHHHHHHhcccc--CCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCC
Q 023354          117 DIFTKEDGEFLMRNGAL--PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADY  194 (283)
Q Consensus       117 d~~~~~~~~~~~~ig~v--~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~  194 (283)
                      .+.++..    ...+.+  ......+++++|......         .+..               -+.+.+.-+..-+|.
T Consensus        83 k~~tTr~----~~~~~~~~~~~qi~~~DTpG~~~~~~---------~l~~---------------~~~r~~~~~l~~aDv  134 (339)
T PRK15494         83 KVQTTRS----IITGIITLKDTQVILYDTPGIFEPKG---------SLEK---------------AMVRCAWSSLHSADL  134 (339)
T ss_pred             CCCCccC----cEEEEEEeCCeEEEEEECCCcCCCcc---------cHHH---------------HHHHHHHHHhhhCCE
Confidence            2222211    011111  111122444555321000         0000               001111112234578


Q ss_pred             cEEEEeCCCCC-Cchhhc---CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHH
Q 023354          195 IIYIIDVSGGD-KIPRKG---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI  270 (283)
Q Consensus       195 ~l~llDpt~g~-~l~~~~---~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l  270 (283)
                      +++++|++... ......   ......+..+|+||.|+...   ....+.+.+....+..+++++||++|.|+++++++|
T Consensus       135 il~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L  211 (339)
T PRK15494        135 VLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYI  211 (339)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHH
Confidence            88999976532 111110   00112345789999998532   233333444444455789999999999999999999


Q ss_pred             HHHHH
Q 023354          271 LQAWE  275 (283)
Q Consensus       271 ~~~~~  275 (283)
                      ....+
T Consensus       212 ~~~l~  216 (339)
T PRK15494        212 TSKAK  216 (339)
T ss_pred             HHhCC
Confidence            87654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.39  E-value=1.5e-12  Score=121.48  Aligned_cols=170  Identities=21%  Similarity=0.228  Sum_probs=105.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhcccc-CCchHHHHHhCCCCCCChHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL-PEERIRAVETGGCPHAAIREDISIN  158 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v-~q~~~~~i~~~g~~~~~~~~~~~~~  158 (283)
                      ..-.++|+|++++|||||+|+|+|..+     .+.....+++.|. +  .+-+- -+..+.+++|.|.....      .+
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~aGTTRD~-I--~~~~e~~~~~~~liDTAGiRrk~------ki  242 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIAGTTRDS-I--DIEFERDGRKYVLIDTAGIRRKG------KI  242 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCCCccccc-e--eeeEEECCeEEEEEECCCCCccc------cc
Confidence            357899999999999999999999643     3344444444431 0  00000 01122355666543221      01


Q ss_pred             HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCC----cccccCEEEEEcCCcccccCC
Q 023354          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGP----GITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~----~i~~ad~ivi~K~g~i~~~g~  234 (283)
                      .+.++.+            |   ..|..-|...++.+++|+|++.+..-+.+...    -...+..|++||||++..+..
T Consensus       243 ~e~~E~~------------S---v~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~  307 (444)
T COG1160         243 TESVEKY------------S---VARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEA  307 (444)
T ss_pred             ccceEEE------------e---ehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhh
Confidence            1112222            1   12333344556889999999987543332111    124678999999999886434


Q ss_pred             hHHHHhHHHHhh---cCCCCeEEEEeccCCCHHHHHHHHHHHHHHhh
Q 023354          235 DLAVMERDALRM---RDGGPFIFAQVKHGLGVEEIVNHILQAWEAST  278 (283)
Q Consensus       235 ~~e~~~~~~~~~---~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~~  278 (283)
                      ..+.+...+...   ..++|++++||++|.|+..+++.+.+.++.+.
T Consensus       308 ~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~  354 (444)
T COG1160         308 TMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECAT  354 (444)
T ss_pred             HHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence            555555555443   46889999999999999999999999987664

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=5.4e-13  Score=123.54  Aligned_cols=145  Identities=19%  Similarity=0.214  Sum_probs=92.2

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+..-.+.+.|+|+... +.....+|-.. ...|+|+||||+||||||++|+|.+.|+ |...-.           .+-+
T Consensus       584 PPvLGlH~VtFgy~gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~  651 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPGQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLR  651 (807)
T ss_pred             CCeeecccccccCCCCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceee
Confidence            45567789999988754 56677888766 7789999999999999999999998886 654311           1124


Q ss_pred             ccccCCchHHHHHhCCCCCCChHH----HHHHHHHHHHHccccccCCCc-ccC-CchHHHHHHHHHH-hcCCcEEEEe-C
Q 023354          130 NGALPEERIRAVETGGCPHAAIRE----DISINLGPLEELSNLFKADLL-LCE-SGGDNLAANFSRE-LADYIIYIID-V  201 (283)
Q Consensus       130 ig~v~q~~~~~i~~~g~~~~~~~~----~~~~~~~~l~~l~~~~~~d~~-i~e-SgGq~q~~~ia~a-l~~~~l~llD-p  201 (283)
                      ||+..|...+.+..--.+.-.+..    ........|-.+++..-...+ +.. ||||+-||++|.. +..|-|+++| |
T Consensus       652 iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP  731 (807)
T KOG0066|consen  652 IGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP  731 (807)
T ss_pred             eechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence            566555432221110000000000    112334566666665443332 333 9999999999953 4458888888 9


Q ss_pred             CCCCCch
Q 023354          202 SGGDKIP  208 (283)
Q Consensus       202 t~g~~l~  208 (283)
                      |+.+++.
T Consensus       732 TNNLDIE  738 (807)
T KOG0066|consen  732 TNNLDIE  738 (807)
T ss_pred             CCCcchh
Confidence            9987653

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.38  E-value=1.6e-12  Score=126.17  Aligned_cols=138  Identities=19%  Similarity=0.089  Sum_probs=84.7

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +.+.+..-.-|+.. ..+++.+|..+ |+.+.|.|++|||||||+|+|+|+.+-. |+|..=..           .++-|
T Consensus       393 i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lf  460 (604)
T COG4178         393 ITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLF  460 (604)
T ss_pred             eEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEE
Confidence            44444444433333 56788888855 9999999999999999999999998754 77653211           12345


Q ss_pred             cCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcc----cC---CchHHHHHHHHHHhcC-CcEE
Q 023354          133 LPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLL----CE---SGGDNLAANFSRELAD-YIIY  197 (283)
Q Consensus       133 v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i----~e---SgGq~q~~~ia~al~~-~~l~  197 (283)
                      +||.|.       +.+-.+........+   ...+.|.++++.+..++.=    ++   |+|++||+++||.+.+ |.++
T Consensus       461 lpQ~PY~p~GtLre~l~YP~~~~~~~d~---~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v  537 (604)
T COG4178         461 LPQRPYLPQGTLREALCYPNAAPDFSDA---ELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWV  537 (604)
T ss_pred             ecCCCCCCCccHHHHHhCCCCCCCCChH---HHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEE
Confidence            555543       223233222111111   2234444444433222211    22   9999999999999996 8888


Q ss_pred             EEe-CCCCCCc
Q 023354          198 IID-VSGGDKI  207 (283)
Q Consensus       198 llD-pt~g~~l  207 (283)
                      ++| +|++.|.
T Consensus       538 ~LDEATsALDe  548 (604)
T COG4178         538 FLDEATSALDE  548 (604)
T ss_pred             EEecchhccCh
Confidence            888 7766543

>cd03112 CobW_like The function of this protein family is unkown

Probab=99.37  E-value=8.9e-13  Score=108.96  Aligned_cols=141  Identities=23%  Similarity=0.305  Sum_probs=92.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCC-HHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~  160 (283)
                      +++.|+|++|||||||++.+++... ..++.+..++.+... +.+....-    ... ..-..+||.||+.+.++...+.
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~~-~~~~~~i~~~~G~~~~d~~~~~~~----~~~-v~~l~~GCiCC~~~~~l~~~l~   74 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQH-GRKIAVIENEFGEVGIDNQLVVDT----DEE-IIEMNNGCICCTVRGDLIRALL   74 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhccc-CCcEEEEecCCCccchhHHHHhCC----Cce-EEEeCCCEeEeeCchhHHHHHH
Confidence            4688999999999999999998643 346777777776443 33332211    111 1113579999988777654432


Q ss_pred             -HHHHc-cccccCCCcccCCchHHHHHHHHHHh-----------cCCcEEEEeCCCCCCch---hhcCCcccccCEEEEE
Q 023354          161 -PLEEL-SNLFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIP---RKGGPGITQADLLVIN  224 (283)
Q Consensus       161 -~l~~l-~~~~~~d~~i~eSgGq~q~~~ia~al-----------~~~~l~llDpt~g~~l~---~~~~~~i~~ad~ivi~  224 (283)
                       .++.+ .....+++++.|+.|......+...+           ++.+++++|+.+..+..   .....|+++||.|++|
T Consensus        75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivln  154 (158)
T cd03112          75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLN  154 (158)
T ss_pred             HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEe
Confidence             22333 23457899999988875444444332           24789999987764322   2234567999999999


Q ss_pred             cCCc
Q 023354          225 KTDL  228 (283)
Q Consensus       225 K~g~  228 (283)
                      |.|+
T Consensus       155 k~dl  158 (158)
T cd03112         155 KTDL  158 (158)
T ss_pred             cccC
Confidence            9985

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.36  E-value=1.5e-13  Score=141.14  Aligned_cols=168  Identities=17%  Similarity=0.088  Sum_probs=114.3

Q ss_pred             CCCCcccc-cccCCCcEEEEEcCCCCcHHHHHHHHHhcccC---CCcEEEEeecCCCCCHHHHHHhccccCCchH-----
Q 023354           68 RAPPILSR-NFNERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (283)
Q Consensus        68 ~~~~~~~~-~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (283)
                      +...|+++ -+-++|-.+||+|.+||||||||+.|+|....   +|.|.+.+....   ...+.|.+|||.|+.+     
T Consensus       803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~---q~tF~R~~GYvqQ~DiH~~~~  879 (1391)
T KOG0065|consen  803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKD---QETFARVSGYVEQQDIHSPEL  879 (1391)
T ss_pred             ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCc---hhhhccccceeecccccCccc
Confidence            33445544 44577999999999999999999999997542   378888776543   2567889999998764     


Q ss_pred             ---HHHHhC---CCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-----CchHHHHHHHHHHhc-CC-cEEEEe-CCC
Q 023354          139 ---RAVETG---GCPHA-AIREDISINLGPLEELSNLFKADLLLCE-----SGGDNLAANFSRELA-DY-IIYIID-VSG  203 (283)
Q Consensus       139 ---~~i~~~---g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~-~l~llD-pt~  203 (283)
                         +-+.+.   +.+.. ...+..+.+.+.++.+.+....|.+++.     |..||+|+.||-+|+ +| .|+++| ||+
T Consensus       880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS  959 (1391)
T KOG0065|consen  880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS  959 (1391)
T ss_pred             chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence               112221   22221 2233334566677777777788888876     889999999998887 56 666666 999


Q ss_pred             CCCchhh------------cCCc------------ccccCEEEEEcC-CcccccCChHHH
Q 023354          204 GDKIPRK------------GGPG------------ITQADLLVINKT-DLASAIGADLAV  238 (283)
Q Consensus       204 g~~l~~~------------~~~~------------i~~ad~ivi~K~-g~i~~~g~~~e~  238 (283)
                      |+|-+..            .+.+            ++..|+++++|. |+.++.|+.-+-
T Consensus       960 GLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen  960 GLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred             CccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence            9763211            1111            367788888886 556776654433

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.34  E-value=6.4e-13  Score=117.79  Aligned_cols=128  Identities=21%  Similarity=0.197  Sum_probs=77.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEee-cCCCC--CHHHHHHhccccCCchHH----------------
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN-DIFTK--EDGEFLMRNGALPEERIR----------------  139 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~-d~~~~--~~~~~~~~ig~v~q~~~~----------------  139 (283)
                      ..+++|+||||||||||+++|++++.++  +++.+.+. ++...  ........+++++|++..                
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            5689999999999999999999998764  45555443 22111  001122367777876310                


Q ss_pred             -HHHhCCCCC--C-ChHHHHHHHHHHHHHcccc--------------------ccCCCcccC-CchHHHHHHHHHHhc--
Q 023354          140 -AVETGGCPH--A-AIREDISINLGPLEELSNL--------------------FKADLLLCE-SGGDNLAANFSRELA--  192 (283)
Q Consensus       140 -~i~~~g~~~--~-~~~~~~~~~~~~l~~l~~~--------------------~~~d~~i~e-SgGq~q~~~ia~al~--  192 (283)
                       .+..++...  . ........+.+.|+.++..                    ...+..+.+ |+||+||+++|++++  
T Consensus       105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~  184 (251)
T cd03273         105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL  184 (251)
T ss_pred             EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence             011111100  0 0111223555677776553                    122344445 999999999999885  


Q ss_pred             ---CCcEEEEe-CCCCCCch
Q 023354          193 ---DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       193 ---~~~l~llD-pt~g~~l~  208 (283)
                         .+.++++| |+++.+..
T Consensus       185 ~~~~~~illlDEPt~~ld~~  204 (251)
T cd03273         185 LFKPAPMYILDEVDAALDLS  204 (251)
T ss_pred             hccCCCEEEEeCCCcCCCHH
Confidence               45777777 99987643

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.30  E-value=1.2e-11  Score=132.45  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=57.8

Q ss_pred             HHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc----CCcEEEEe-CCCCCCchh------------hcCCc------
Q 023354          160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA----DYIIYIID-VSGGDKIPR------------KGGPG------  214 (283)
Q Consensus       160 ~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~----~~~l~llD-pt~g~~l~~------------~~~~~------  214 (283)
                      +.|+.+++.+. .+..+.+ |+||+||+.+|++++    +|.++++| |+++.+...            +.+.+      
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH  870 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH  870 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            45566665554 5666666 999999999999996    68888888 999965321            11211      


Q ss_pred             ----ccccCEEEEEc------CCcccccCChHHHH
Q 023354          215 ----ITQADLLVINK------TDLASAIGADLAVM  239 (283)
Q Consensus       215 ----i~~ad~ivi~K------~g~i~~~g~~~e~~  239 (283)
                          +..||++++++      .|.+++.|++.+++
T Consensus       871 dl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~  905 (1809)
T PRK00635        871 NMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI  905 (1809)
T ss_pred             CHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence                27899999996      68888888877665

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.28  E-value=2.3e-11  Score=113.69  Aligned_cols=157  Identities=22%  Similarity=0.243  Sum_probs=103.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP  161 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~  161 (283)
                      ++|+|+|++++|||||+|.|+|.     +++++..-++.++|...  ..+-.....+.+++|||......        +.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~-----r~AIV~D~pGvTRDr~y--~~~~~~~~~f~lIDTgGl~~~~~--------~~   68 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGR-----RIAIVSDTPGVTRDRIY--GDAEWLGREFILIDTGGLDDGDE--------DE   68 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC-----eeeEeecCCCCccCCcc--ceeEEcCceEEEEECCCCCcCCc--------hH
Confidence            68999999999999999999995     67888877777766421  11222222345678888753221        01


Q ss_pred             HHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHH
Q 023354          162 LEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       162 l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                      +...               +++.+..|..-+|.+|+|+|...|.....+.    .......-.+++||+|...++    +
T Consensus        69 l~~~---------------i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e----~  129 (444)
T COG1160          69 LQEL---------------IREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE----E  129 (444)
T ss_pred             HHHH---------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh----h
Confidence            1111               1455666777789999999988874322111    111134568999999987331    1


Q ss_pred             HHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          238 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       238 ~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ... . .-..+..+++.+||.+|.|+.+|++++.+.+
T Consensus       130 ~~~-e-fyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         130 LAY-E-FYSLGFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             hHH-H-HHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence            111 1 1223556789999999999999999999886

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.28  E-value=1.4e-10  Score=95.77  Aligned_cols=84  Identities=20%  Similarity=0.299  Sum_probs=55.4

Q ss_pred             cCCcEEEEeCCCCCCc-hhhc-CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKI-PRKG-GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l-~~~~-~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      ++.+++++|++..... ..+. ......+..+++||.|+...   ..+.+.+.+.+.....|++++|+++|+|+++|+++
T Consensus        65 ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~  141 (158)
T PRK15467         65 VDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDY  141 (158)
T ss_pred             CCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHH
Confidence            4788999998876421 1111 01112345899999997432   23334444444444469999999999999999999


Q ss_pred             HHHHHHHhh
Q 023354          270 ILQAWEAST  278 (283)
Q Consensus       270 l~~~~~~~~  278 (283)
                      +.+..+...
T Consensus       142 l~~~~~~~~  150 (158)
T PRK15467        142 LASLTKQEE  150 (158)
T ss_pred             HHHhchhhh
Confidence            988875443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.28  E-value=4.3e-12  Score=118.12  Aligned_cols=109  Identities=19%  Similarity=0.224  Sum_probs=73.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch-------HHHHHh---CC-C
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER-------IRAVET---GG-C  146 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~-------~~~i~~---~g-~  146 (283)
                      ..||+++++||||-||||++++|+|.++|+ |.    ..++          +++|-||.-       ...+..   .. +
T Consensus       365 ~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gtV~~~l~~~~~~~~  430 (591)
T COG1245         365 YDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGTVEDLLRSAIRSAF  430 (591)
T ss_pred             ecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCcHHHHHHHhhhhhc
Confidence            358999999999999999999999999997 65    1111          233333321       111111   00 1


Q ss_pred             CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          147 PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                      ....      ...+.+..|.+...+++.+.+ |||+.||++||.+|+ +.-|+|+| |++.+|.
T Consensus       431 ~~s~------~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv  488 (591)
T COG1245         431 GSSY------FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV  488 (591)
T ss_pred             ccch------hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence            1110      112345566667777888888 999999999999998 48888888 8887654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.27  E-value=7.6e-11  Score=95.15  Aligned_cols=79  Identities=20%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             hcCCcEEEEeCCCCCC-chhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          191 LADYIIYIIDVSGGDK-IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       191 l~~~~l~llDpt~g~~-l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      -++.+++|.|++.... ++......+...-+-||+|.|+... ....+... ..++.....+++.+|+.+|+|+++|.++
T Consensus        63 dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~-~~~i~~a~-~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   63 DADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSD-DANIERAK-KWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             hCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccc-hhhHHHHH-HHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            4568889999887543 4444445566677889999998732 12333333 3455566678899999999999999999


Q ss_pred             HH
Q 023354          270 IL  271 (283)
Q Consensus       270 l~  271 (283)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            85

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00436 era GTP-binding protein Era

Probab=99.26  E-value=2.6e-11  Score=108.64  Aligned_cols=158  Identities=15%  Similarity=0.084  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhcccc--CCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL--PEERIRAVETGGCPHAAIREDISINLG  160 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v--~q~~~~~i~~~g~~~~~~~~~~~~~~~  160 (283)
                      +|+|+|++|||||||+|+|+|.     .+.+....+.++...    ..|+.  ......+++++|......  .+.   +
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~-----~~~~vs~~~~TTr~~----i~~i~~~~~~qii~vDTPG~~~~~~--~l~---~   67 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ-----KISITSPKAQTTRNR----ISGIHTTGASQIIFIDTPGFHEKKH--SLN---R   67 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-----cEeecCCCCCcccCc----EEEEEEcCCcEEEEEECcCCCCCcc--hHH---H
Confidence            6899999999999999999984     233333333332210    01111  111123455666432100  000   0


Q ss_pred             HHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcC---CcccccCEEEEEcCCcccccCChHH
Q 023354          161 PLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGG---PGITQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       161 ~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~---~~i~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                      .+                   ...+.-+..-+|.+++++|++..........   ......-.+++||.|++..  ....
T Consensus        68 ~~-------------------~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~--~~~~  126 (270)
T TIGR00436        68 LM-------------------MKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFK--DKLL  126 (270)
T ss_pred             HH-------------------HHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCH--HHHH
Confidence            00                   0111111223568899999876532211100   0113345899999998632  1111


Q ss_pred             HHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          238 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       238 ~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .............+++++||++|.|+++|+++|.+.++
T Consensus       127 ~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       127 PLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             HHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            11122223333458999999999999999999988764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.21  E-value=8.5e-11  Score=120.71  Aligned_cols=78  Identities=23%  Similarity=0.298  Sum_probs=54.8

Q ss_pred             HHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-C---cEEEEe-CCCCCCchh------------hcCCc--------
Q 023354          162 LEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-Y---IIYIID-VSGGDKIPR------------KGGPG--------  214 (283)
Q Consensus       162 l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~---~l~llD-pt~g~~l~~------------~~~~~--------  214 (283)
                      |+.+++.+ ..+..+.+ |+||+||+.+|++|+. +   .++|+| |+++.+...            +.+.+        
T Consensus       814 L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~  893 (943)
T PRK00349        814 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL  893 (943)
T ss_pred             HHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            34444443 24555555 9999999999999985 5   688888 999865321            11212        


Q ss_pred             --ccccCEEEEE------cCCcccccCChHHHH
Q 023354          215 --ITQADLLVIN------KTDLASAIGADLAVM  239 (283)
Q Consensus       215 --i~~ad~ivi~------K~g~i~~~g~~~e~~  239 (283)
                        +..||+|+.+      +.|.+++.|++.+++
T Consensus       894 ~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~  926 (943)
T PRK00349        894 DVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA  926 (943)
T ss_pred             HHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence              2679999999      789999988876654

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.20  E-value=8.5e-11  Score=111.44  Aligned_cols=162  Identities=17%  Similarity=0.159  Sum_probs=89.4

Q ss_pred             CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC---CcEEEEeecCCCCCHHHHHHhcc-ccCCchHH---HH
Q 023354           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK---YSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR---AV  141 (283)
Q Consensus        70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~---g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~---~i  141 (283)
                      ..+.+..|. .+|+.+||+|+|||||||+|+++.+...|.   -.+.....++.. ++......+- ...+...+   +.
T Consensus        89 ~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~p-s~~~av~~v~~~~~~e~~rle~~~  167 (614)
T KOG0927|consen   89 ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEP-SEKQAVQAVVMETDHERKRLEYLA  167 (614)
T ss_pred             eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCC-chHHHHHHHhhhhHHHHHHHHHHH
Confidence            355677776 459999999999999999999999987664   233333333321 1111111110 01111100   00


Q ss_pred             H-hC-CCCC---CCh---H--------HHHH-HHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-
Q 023354          142 E-TG-GCPH---AAI---R--------EDIS-INLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-  200 (283)
Q Consensus       142 ~-~~-g~~~---~~~---~--------~~~~-~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-  200 (283)
                      + +. .|..   ...   .        +.++ .+...|..++.. ...++.+.+ |||++.|+++||+|.. |.++|+| 
T Consensus       168 E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDE  247 (614)
T KOG0927|consen  168 EDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDE  247 (614)
T ss_pred             HHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecC
Confidence            0 00 0111   000   0        0111 222344444322 234455555 9999999999999985 8888888 


Q ss_pred             CCCCCCchh---------hcCC-cc-----------cccCEEEEEcCCccccc
Q 023354          201 VSGGDKIPR---------KGGP-GI-----------TQADLLVINKTDLASAI  232 (283)
Q Consensus       201 pt~g~~l~~---------~~~~-~i-----------~~ad~ivi~K~g~i~~~  232 (283)
                      ||+++|+..         ++.. .+           ..|..||-++..++++.
T Consensus       248 PtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y  300 (614)
T KOG0927|consen  248 PTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY  300 (614)
T ss_pred             CccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeee
Confidence            999987642         1222 11           56777777777775443

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.20  E-value=9.4e-11  Score=109.89  Aligned_cols=161  Identities=25%  Similarity=0.263  Sum_probs=96.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISIN  158 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~  158 (283)
                      .+|..++|+|+|++|||||||+|++.     ..+++..-.++++|.  .+..--+-..+...++|.|.....        
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~-----d~AIVTdI~GTTRDv--iee~i~i~G~pv~l~DTAGiRet~--------  279 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGR-----DRAIVTDIAGTTRDV--IEEDINLNGIPVRLVDTAGIRETD--------  279 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcC-----CceEecCCCCCccce--EEEEEEECCEEEEEEecCCcccCc--------
Confidence            35899999999999999999999996     446666666666552  111001112233455566543221        


Q ss_pred             HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchh--hcC-CcccccCEEEEEcCCcccccCCh
Q 023354          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR--KGG-PGITQADLLVINKTDLASAIGAD  235 (283)
Q Consensus       159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~--~~~-~~i~~ad~ivi~K~g~i~~~g~~  235 (283)
                       ..+++.+               -.|..-+..-+|.+++|+|++....-..  .+. ..-.....+|+||.|+.....  
T Consensus       280 -d~VE~iG---------------IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~--  341 (454)
T COG0486         280 -DVVERIG---------------IERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIE--  341 (454)
T ss_pred             -cHHHHHH---------------HHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccc--
Confidence             1222221               1122222234578999999877421111  011 111233489999999987632  


Q ss_pred             HHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          236 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       236 ~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      ....     +.....+++.+|+++++|++.|.+.|.+.+...
T Consensus       342 ~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         342 LESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             cchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            1111     233445789999999999999999999887654

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.19  E-value=1.3e-10  Score=109.29  Aligned_cols=168  Identities=19%  Similarity=0.168  Sum_probs=119.5

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC-CCCCHHHHHH-hccccCCchH------
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI-FTKEDGEFLM-RNGALPEERI------  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~-~~~~~~~~~~-~ig~v~q~~~------  138 (283)
                      ...+.+++|..+ ||+++|.|=.|-|-+-|+.+|+|+.++. |+|.+.+.++ ...++.++++ .++|||.+..      
T Consensus       271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~  350 (501)
T COG3845         271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVL  350 (501)
T ss_pred             CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcccc
Confidence            456888999966 9999999999999999999999998765 9999999997 5556665544 5999998863      


Q ss_pred             -----HHHHhCCCC---C-----CChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          139 -----RAVETGGCP---H-----AAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       139 -----~~i~~~g~~---~-----~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                           +...++...   .     ...........+.+++|.... ....+... |||..|++-+||.+. +|.++++. |
T Consensus       351 ~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qP  430 (501)
T COG3845         351 DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQP  430 (501)
T ss_pred             CccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCC
Confidence                 111111111   1     111222224455677776553 34444544 999999999999998 48888887 9


Q ss_pred             CCCCCchh------------hcCC-----------cccccCEEEEEcCCcccccCChH
Q 023354          202 SGGDKIPR------------KGGP-----------GITQADLLVINKTDLASAIGADL  236 (283)
Q Consensus       202 t~g~~l~~------------~~~~-----------~i~~ad~ivi~K~g~i~~~g~~~  236 (283)
                      |.|.|+-.            ..+.           .+..||+|.++..|++....++.
T Consensus       431 TrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~  488 (501)
T COG3845         431 TRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE  488 (501)
T ss_pred             CccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence            99977421            1111           13789999999999997754443

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.18  E-value=2.3e-12  Score=111.57  Aligned_cols=39  Identities=18%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             ccCCCcccC-CchHHHHHHHHHHhc----C-CcEEEEe-CCCCCCc
Q 023354          169 FKADLLLCE-SGGDNLAANFSRELA----D-YIIYIID-VSGGDKI  207 (283)
Q Consensus       169 ~~~d~~i~e-SgGq~q~~~ia~al~----~-~~l~llD-pt~g~~l  207 (283)
                      ...+..+.. |+||+||+.+|++++    + |.++++| |+++.|.
T Consensus       119 ~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~  164 (212)
T cd03274         119 KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDF  164 (212)
T ss_pred             cccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCH
Confidence            334444444 999999999999885    3 5677777 9998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK00089 era GTPase Era; Reviewed

Probab=99.17  E-value=1.2e-10  Score=105.31  Aligned_cols=162  Identities=22%  Similarity=0.210  Sum_probs=89.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCC--chHHHHHhCCCCCCChHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE--ERIRAVETGGCPHAAIREDISI  157 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q--~~~~~i~~~g~~~~~~~~~~~~  157 (283)
                      +.-+|+|+|++|||||||+|.|+|.     .+.+....+.++..    ...++...  ....+++++|.....  ..   
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~-----~~~~vs~~~~tt~~----~i~~i~~~~~~qi~~iDTPG~~~~~--~~---   69 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQ-----KISIVSPKPQTTRH----RIRGIVTEDDAQIIFVDTPGIHKPK--RA---   69 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCC-----ceeecCCCCCcccc----cEEEEEEcCCceEEEEECCCCCCch--hH---
Confidence            3347999999999999999999984     33333333332211    11122111  122345666653211  00   


Q ss_pred             HHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCC-chhh---cCCcccccCEEEEEcCCcccccC
Q 023354          158 NLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDK-IPRK---GGPGITQADLLVINKTDLASAIG  233 (283)
Q Consensus       158 ~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~-l~~~---~~~~i~~ad~ivi~K~g~i~~~g  233 (283)
                          +...               ..+.+.-+..-+|.+++++|++.... ....   ..........+|+||.|++... 
T Consensus        70 ----l~~~---------------~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~-  129 (292)
T PRK00089         70 ----LNRA---------------MNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDK-  129 (292)
T ss_pred             ----HHHH---------------HHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCH-
Confidence                0000               01111112233578899999876311 1111   0111235679999999987321 


Q ss_pred             ChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          234 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       234 ~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .........+.+..+..+++.+|++++.|+++++++|....+
T Consensus       130 ~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        130 EELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            111222233344445678999999999999999999987754

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.17  E-value=2.1e-11  Score=104.92  Aligned_cols=115  Identities=20%  Similarity=0.108  Sum_probs=61.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHH----hcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-HHHHhCCCCCCChHHHHH
Q 023354           83 TVGIGGPVGTGKTALMLALC----KFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-RAVETGGCPHAAIREDIS  156 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~----g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-~~i~~~g~~~~~~~~~~~  156 (283)
                      +++|+||||||||||+++|+    |...++ +.+......+..   ......+++++|++. .....  +...+..+++.
T Consensus        24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v--~r~~~~~~~~~   98 (204)
T cd03240          24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTI--TRSLAILENVI   98 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEE--EEEhhHhhcee
Confidence            99999999999999999995    766654 444311111111   112345777777651 00000  00000000000


Q ss_pred             H-HHHHHHHccccccCCCcccC-CchHHHH------HHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          157 I-NLGPLEELSNLFKADLLLCE-SGGDNLA------ANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       157 ~-~~~~l~~l~~~~~~d~~i~e-SgGq~q~------~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                      . ....+..+     .+..+.. |+||+|+      ++++++++ +|.++++| |+++.+.
T Consensus        99 ~~~~~~~~~~-----~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~  154 (204)
T cd03240          99 FCHQGESNWP-----LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE  154 (204)
T ss_pred             eechHHHHHH-----HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence            0 00011111     1333334 9999996      56777776 57777777 9988764

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.15  E-value=1.3e-10  Score=119.11  Aligned_cols=77  Identities=22%  Similarity=0.275  Sum_probs=53.1

Q ss_pred             HHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchhh------------cCCc-------
Q 023354          161 PLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPRK------------GGPG-------  214 (283)
Q Consensus       161 ~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~~------------~~~~-------  214 (283)
                      .|..+++.+ ..+..+.+ |+||+||+.+|++++.    +.++++| |+++.+....            .+.+       
T Consensus       811 ~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~  890 (924)
T TIGR00630       811 TLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHN  890 (924)
T ss_pred             HHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            334444433 24555555 9999999999999983    6788888 9998653211            1111       


Q ss_pred             ---ccccCEEEEE------cCCcccccCChHH
Q 023354          215 ---ITQADLLVIN------KTDLASAIGADLA  237 (283)
Q Consensus       215 ---i~~ad~ivi~------K~g~i~~~g~~~e  237 (283)
                         +..||+++++      +.|++++.|++.+
T Consensus       891 ~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~  922 (924)
T TIGR00630       891 LDVIKTADYIIDLGPEGGDGGGTIVASGTPEE  922 (924)
T ss_pred             HHHHHhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence               2679999999      7899988887654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.15  E-value=3.3e-11  Score=102.32  Aligned_cols=174  Identities=12%  Similarity=0.097  Sum_probs=116.9

Q ss_pred             CCCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC-----cEEEEeecCCCCCHHHHHH----hccccCCc
Q 023354           67 RRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-----SLAAVTNDIFTKEDGEFLM----RNGALPEE  136 (283)
Q Consensus        67 ~~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-----~i~i~~~d~~~~~~~~~~~----~ig~v~q~  136 (283)
                      .+..++++++++ .+|++-|++|.+|||||-+.|+|+|..+.+.     +..+.+.++-+..+.++++    .++++||+
T Consensus        18 G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQe   97 (330)
T COG4170          18 GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE   97 (330)
T ss_pred             CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcC
Confidence            444567788887 4599999999999999999999999887644     3455666666777776655    46778998


Q ss_pred             hHHH-----------HH-hCCCCCC-C----hHHHHHHHHHHHHHccccccCCC---cccC-CchHHHHHHHHHHhcC-C
Q 023354          137 RIRA-----------VE-TGGCPHA-A----IREDISINLGPLEELSNLFKADL---LLCE-SGGDNLAANFSRELAD-Y  194 (283)
Q Consensus       137 ~~~~-----------i~-~~g~~~~-~----~~~~~~~~~~~l~~l~~~~~~d~---~i~e-SgGq~q~~~ia~al~~-~  194 (283)
                      +...           +. .++..+. .    ..-...++.+.|..++.++-.|.   +..| +.|+-|+|.||.|+++ |
T Consensus        98 P~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqP  177 (330)
T COG4170          98 PQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQP  177 (330)
T ss_pred             chhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCC
Confidence            7521           11 1221111 0    11122345667777777654332   2334 8999999999999995 9


Q ss_pred             cEEEEe-CCCCCCc-------------hhhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKI-------------PRKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l-------------~~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .+++.| ||+..+.             .+..+.+           -++||+|-++.+|.-++.++..+.+.
T Consensus       178 rLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~  248 (330)
T COG4170         178 RLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT  248 (330)
T ss_pred             ceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence            999988 8876431             1111111           27899999999999888766665543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.15  E-value=1.4e-10  Score=108.09  Aligned_cols=134  Identities=20%  Similarity=0.142  Sum_probs=84.0

Q ss_pred             cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH------------
Q 023354           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI------------  138 (283)
Q Consensus        72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~------------  138 (283)
                      |.+.....+|.++||+|+||-||||.++.|+|.+.|+ |+..   .++. + +.-+.+--|--.|+-+            
T Consensus        91 L~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~---~pp~-w-deVi~~FrGtELq~YF~~l~~g~~r~v~  165 (591)
T COG1245          91 LYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE---DPPS-W-DEVIKRFRGTELQNYFKKLYEGELRAVH  165 (591)
T ss_pred             EecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC---CCCC-H-HHHHHHhhhhHHHHHHHHHHcCCcceec
Confidence            4455555679999999999999999999999999997 6531   1111 1 1001111111111110            


Q ss_pred             --HHHH-hCCCCCCChHHHHH------HHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCC
Q 023354          139 --RAVE-TGGCPHAAIREDIS------INLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDK  206 (283)
Q Consensus       139 --~~i~-~~g~~~~~~~~~~~------~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~  206 (283)
                        .+++ .+......+.+.+.      ...+.++.+.+....++-+.+ |||+-||++||.+++ +.-++++| |++.+|
T Consensus       166 K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLD  245 (591)
T COG1245         166 KPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD  245 (591)
T ss_pred             chHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccccc
Confidence              1222 11111112222222      233466777777788888887 999999999999998 57788888 999888


Q ss_pred             chhh
Q 023354          207 IPRK  210 (283)
Q Consensus       207 l~~~  210 (283)
                      +.+.
T Consensus       246 i~qR  249 (591)
T COG1245         246 IRQR  249 (591)
T ss_pred             HHHH
Confidence            7654

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=6.2e-11  Score=111.80  Aligned_cols=132  Identities=14%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             CCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEee--cCCCCCHHHHHHhccccCCchHHHHHhC
Q 023354           68 RAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTN--DIFTKEDGEFLMRNGALPEERIRAVETG  144 (283)
Q Consensus        68 ~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~--d~~~~~~~~~~~~ig~v~q~~~~~i~~~  144 (283)
                      .+..++..++. .+|..+||+|+||+||||||++|+.     +.|.....  ++.+-.... ..  ..+..+. ...++-
T Consensus        92 ~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~veqE~~g~~t~~-~~--~~l~~D~-~~~dfl  162 (582)
T KOG0062|consen   92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVEQEVRGDDTEA-LQ--SVLESDT-ERLDFL  162 (582)
T ss_pred             chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCchhheeccchHH-Hh--hhhhccH-HHHHHH
Confidence            44566777776 4599999999999999999999988     23222211  111100000 00  0000000 000000


Q ss_pred             C-CCCCChHHHHHHHHH-HHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          145 G-CPHAAIREDISINLG-PLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       145 g-~~~~~~~~~~~~~~~-~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      . .......-....+.. .|..++-.. -..+++.+ |||.+.|+++|||+. +|-|+||| ||+-+|+.
T Consensus       163 ~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~  232 (582)
T KOG0062|consen  163 AEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV  232 (582)
T ss_pred             HhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH
Confidence            0 000000001111122 555554433 23445555 999999999999987 68888888 99987764

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.14  E-value=4.7e-10  Score=102.77  Aligned_cols=169  Identities=16%  Similarity=0.248  Sum_probs=102.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC------HHHHHHhccccCCchHHHHHhCCCCCCCh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPEERIRAVETGGCPHAAI  151 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~------~~~~~~~ig~v~q~~~~~i~~~g~~~~~~  151 (283)
                      .++.+++|+|||||||||++..|++.+.+. ++|.+++.|+....      ....+..+.++++..      +..+    
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~------~~dp----  181 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE------GADP----  181 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC------CCCH----
Confidence            358999999999999999999999998877 78999998875421      111222344443311      1110    


Q ss_pred             HHHHHHHHHHHHHccccccCCCcccCCchHHH-----HH---HHHHH---hc----CCcEEEEeCCCCCCchhhcCCcc-
Q 023354          152 REDISINLGPLEELSNLFKADLLLCESGGDNL-----AA---NFSRE---LA----DYIIYIIDVSGGDKIPRKGGPGI-  215 (283)
Q Consensus       152 ~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q-----~~---~ia~a---l~----~~~l~llDpt~g~~l~~~~~~~i-  215 (283)
                         ...+.+.+... ....+|.+++++.|..+     .-   .+.+.   +.    +..++++|++.+.+-..+..... 
T Consensus       182 ---a~~v~~~l~~~-~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~  257 (318)
T PRK10416        182 ---ASVAFDAIQAA-KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHE  257 (318)
T ss_pred             ---HHHHHHHHHHH-HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHh
Confidence               01112233222 34678999999777421     11   11111   11    25789999988753222211111 


Q ss_pred             -cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          216 -TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       216 -~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                       -..+.+|++|.|....-|.....+..      .+.|+.+++  +|+++++|..+
T Consensus       258 ~~~~~giIlTKlD~t~~~G~~l~~~~~------~~~Pi~~v~--~Gq~~~Dl~~~  304 (318)
T PRK10416        258 AVGLTGIILTKLDGTAKGGVVFAIADE------LGIPIKFIG--VGEGIDDLQPF  304 (318)
T ss_pred             hCCCCEEEEECCCCCCCccHHHHHHHH------HCCCEEEEe--CCCChhhCccC
Confidence             13578999999977665655544422      278999988  88888776543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.13  E-value=2.9e-10  Score=94.97  Aligned_cols=164  Identities=18%  Similarity=0.138  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCCCc-EEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHH
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDKYS-LAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP  161 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~-i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~  161 (283)
                      .|+|+|..|||||||++.|++...+.+. ..... ........+..+.+....          .+.              
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~--------------   55 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEE-TFLDVLKEERERGITIKS----------GVA--------------   55 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceec-ccccCCHHHHHcCCCeec----------ceE--------------
Confidence            3799999999999999999997554322 11111 111111111111100000          000              


Q ss_pred             HHHccccccCCCcccCCchHHHHHHH---HHHhcCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccC-
Q 023354          162 LEELSNLFKADLLLCESGGDNLAANF---SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIG-  233 (283)
Q Consensus       162 l~~l~~~~~~d~~i~eSgGq~q~~~i---a~al~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g-  233 (283)
                        .+ .....+..++++.|+......   +..-++..++++|++.+......    ..........+++||.|++.... 
T Consensus        56 --~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~  132 (189)
T cd00881          56 --TF-EWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDL  132 (189)
T ss_pred             --EE-eeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcH
Confidence              00 001234455666665432222   22345789999998765422110    00112456799999999986311 


Q ss_pred             -ChHHHHhHHHHhh------------cCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          234 -ADLAVMERDALRM------------RDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       234 -~~~e~~~~~~~~~------------~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                       ...+.+.+.+...            ....+++++|+++|.|+++++++|...+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         133 EEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence             1112222222221            1357899999999999999999998765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.13  E-value=4.1e-11  Score=106.00  Aligned_cols=31  Identities=39%  Similarity=0.429  Sum_probs=26.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLA  112 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~  112 (283)
                      .+++|+|||||||||||.+|++++.+. +.+.
T Consensus        23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r   54 (247)
T cd03275          23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLR   54 (247)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence            489999999999999999999988654 5443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd04163 Era Era subfamily

Probab=99.12  E-value=4.9e-10  Score=90.93  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=52.3

Q ss_pred             cCCcEEEEeCCCC-CCchhhcC---CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHH
Q 023354          192 ADYIIYIIDVSGG-DKIPRKGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV  267 (283)
Q Consensus       192 ~~~~l~llDpt~g-~~l~~~~~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~  267 (283)
                      ++..++++|++.. .+......   ........+++||.|+..... ........+....+..+++.+|++++.|+++++
T Consensus        83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~  161 (168)
T cd04163          83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKE-DLLPLLEKLKELGPFAEIFPISALKGENVDELL  161 (168)
T ss_pred             CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHH-HHHHHHHHHHhccCCCceEEEEeccCCChHHHH
Confidence            4678999998764 21111100   111356789999999874322 222233344445556789999999999999999


Q ss_pred             HHHHHH
Q 023354          268 NHILQA  273 (283)
Q Consensus       268 ~~l~~~  273 (283)
                      ++|.+.
T Consensus       162 ~~l~~~  167 (168)
T cd04163         162 EEIVKY  167 (168)
T ss_pred             HHHHhh
Confidence            998754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd00879 Sar1 Sar1 subfamily

Probab=99.11  E-value=2.8e-10  Score=95.99  Aligned_cols=154  Identities=17%  Similarity=0.147  Sum_probs=82.6

Q ss_pred             cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCCh
Q 023354           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI  151 (283)
Q Consensus        72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~  151 (283)
                      ++...+..+..+++|+|++|||||||++.+++-....       ..+ +..+     ..+.+        ...       
T Consensus        10 ~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-------~~~-T~~~-----~~~~i--------~~~-------   61 (190)
T cd00879          10 LSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-------HVP-TLHP-----TSEEL--------TIG-------   61 (190)
T ss_pred             HHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcc-------cCC-ccCc-----ceEEE--------EEC-------
Confidence            4455666666788999999999999999998732100       000 0000     00000        000       


Q ss_pred             HHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCch---hh----c--CCcccccC
Q 023354          152 REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIP---RK----G--GPGITQAD  219 (283)
Q Consensus       152 ~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~---~~----~--~~~i~~ad  219 (283)
                                        .....+.+.+|+.+.-.+....   ++..++++|.+....+.   ..    .  ......+-
T Consensus        62 ------------------~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pv  123 (190)
T cd00879          62 ------------------NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPF  123 (190)
T ss_pred             ------------------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCE
Confidence                              0111223344543332222222   25778889977532111   00    0  00112455


Q ss_pred             EEEEEcCCcccccCChHHHHhHHHHhh--------------cCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          220 LLVINKTDLASAIGADLAVMERDALRM--------------RDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       220 ~ivi~K~g~i~~~g~~~e~~~~~~~~~--------------~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      .|++||.|+...  ...+.+...+...              ....+++.+||++|+|++++++||.+.
T Consensus       124 ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         124 LILGNKIDLPGA--VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEEeCCCCCCC--cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            888999998643  2233333332210              122468999999999999999999753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.10  E-value=1.6e-10  Score=98.95  Aligned_cols=113  Identities=16%  Similarity=-0.010  Sum_probs=61.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHH------HhccccCCchHHHHHhCCCCCCChHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFL------MRNGALPEERIRAVETGGCPHAAIREDI  155 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~------~~ig~v~q~~~~~i~~~g~~~~~~~~~~  155 (283)
                      .+.+|+|||||||||||.+|.-.+.........+.     ...++.      ..+.+.++...      .+.........
T Consensus        22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~-----~~~~~i~~~~~~~~i~~~~~~~~------~~~~~~~~~~~   90 (198)
T cd03276          22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGS-----SLKDLIKDGESSAKITVTLKNQG------LDANPLCVLSQ   90 (198)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhcCCcccccccc-----cHHHHhhCCCCeEEEEEEEEcCC------ccCCcCCHHHH
Confidence            37799999999999999999764432210000011     011111      12333333211      11110000111


Q ss_pred             HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHh-----cCCcEEEEe-CCCCCCch
Q 023354          156 SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSREL-----ADYIIYIID-VSGGDKIP  208 (283)
Q Consensus       156 ~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al-----~~~~l~llD-pt~g~~l~  208 (283)
                      ..+.+.|+.   ....+..+.. |+||+|++.+|+++     .+|.++++| |+++.+..
T Consensus        91 ~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~  147 (198)
T cd03276          91 DMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV  147 (198)
T ss_pred             HHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence            222334433   3334555555 99999999999988     368888888 99987653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.08  E-value=2.5e-10  Score=93.92  Aligned_cols=97  Identities=19%  Similarity=0.236  Sum_probs=56.2

Q ss_pred             cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      .+++.+|+.....+....   ++..++++|++....+..   ..    .  .....+-.+++||.|+...  ...+.+..
T Consensus        53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~  130 (167)
T cd04160          53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKE  130 (167)
T ss_pred             EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHH
Confidence            344456654333333332   357899999876432211   00    0  0113456899999997654  22233333


Q ss_pred             HHHhh-----cCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          242 DALRM-----RDGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       242 ~~~~~-----~~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      .+...     ....+++.+|+++|.|++++++||..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         131 VFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             HhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            22221     13457999999999999999999853

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04155 Arl3 Arl3 subfamily

Probab=99.08  E-value=7.3e-10  Score=91.73  Aligned_cols=78  Identities=22%  Similarity=0.238  Sum_probs=44.2

Q ss_pred             CCcEEEEeCCCCCCchh---h------cCCcccccCEEEEEcCCcccccCChHHHHhHHHH-hhcC--CCCeEEEEeccC
Q 023354          193 DYIIYIIDVSGGDKIPR---K------GGPGITQADLLVINKTDLASAIGADLAVMERDAL-RMRD--GGPFIFAQVKHG  260 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~---~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~~~--~~~i~~isa~~g  260 (283)
                      +..++++|.+....+..   .      .......+..+++||.|.....  ..+.+.+.+. ....  ..+++.+|+++|
T Consensus        83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCC
Confidence            46788899765321110   0      0001134557889999986542  2222222211 0000  124678999999


Q ss_pred             CCHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQ  272 (283)
Q Consensus       261 ~gi~~l~~~l~~  272 (283)
                      +|++++++||.+
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999853

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.08  E-value=1.4e-09  Score=102.30  Aligned_cols=211  Identities=17%  Similarity=0.155  Sum_probs=112.2

Q ss_pred             CCCccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHH
Q 023354           29 HGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLAL  101 (283)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L  101 (283)
                      .....+..+..+..+....+.|.-|.....+.+..     ++...++. -..+.+.-+ -.-|+|+|++|||||||||+|
T Consensus       100 ~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~L  179 (390)
T PRK12298        100 DTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAV  179 (390)
T ss_pred             CCCcEEEEeccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHH
Confidence            34456777888888888888888666444433322     22211221 111222222 345999999999999999999


Q ss_pred             HhcccCCCcEEEEeecCCCCCHHHHHHhccccCC---chHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCC
Q 023354          102 CKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE---ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCES  178 (283)
Q Consensus       102 ~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q---~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eS  178 (283)
                      ++.- +    . +...+.++.    ...+|++..   ..+.+++++|.......                         .
T Consensus       180 t~~k-~----~-vs~~p~TT~----~p~~Giv~~~~~~~i~~vDtPGi~~~a~~-------------------------~  224 (390)
T PRK12298        180 SAAK-P----K-VADYPFTTL----VPNLGVVRVDDERSFVVADIPGLIEGASE-------------------------G  224 (390)
T ss_pred             hCCc-c----c-ccCCCCCcc----CcEEEEEEeCCCcEEEEEeCCCccccccc-------------------------h
Confidence            9842 1    1 222222221    123444321   12345566665321100                         0


Q ss_pred             chHHHHHHHHHHhcCCcEEEEeCCCC--CCc-------hhh---cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHh
Q 023354          179 GGDNLAANFSRELADYIIYIIDVSGG--DKI-------PRK---GGP-GITQADLLVINKTDLASAIGADLAVMERDALR  245 (283)
Q Consensus       179 gGq~q~~~ia~al~~~~l~llDpt~g--~~l-------~~~---~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~  245 (283)
                      .|...+..-...-++.+++|+|.+..  .+.       ..+   +.. ....+..||+||+|++... ...+.+ ..+.+
T Consensus       225 ~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~-el~~~l-~~l~~  302 (390)
T PRK12298        225 AGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE-EAEERA-KAIVE  302 (390)
T ss_pred             hhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH-HHHHHH-HHHHH
Confidence            01111111112234678889996621  111       111   100 1235669999999986431 111222 22233


Q ss_pred             hcCC-CCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          246 MRDG-GPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       246 ~~~~-~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      .... .+++++||+++.|+++|+++|...+++
T Consensus       303 ~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        303 ALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             HhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            3333 478999999999999999999887754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.08  E-value=9.4e-10  Score=88.88  Aligned_cols=75  Identities=27%  Similarity=0.372  Sum_probs=51.1

Q ss_pred             hcCCcEEEEeCCCCCCch--hhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354          191 LADYIIYIIDVSGGDKIP--RKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN  268 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~--~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~  268 (283)
                      -++..++++|++......  ............+++||.|+......         .......+++.+|++++.|+++|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~---------~~~~~~~~~~~~Sa~~~~~v~~l~~  150 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL---------LSLLAGKPIIAISAKTGEGLDELKE  150 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc---------ccccCCCceEEEECCCCCCHHHHHH
Confidence            456789999987532111  11111234567999999998765321         2233467899999999999999999


Q ss_pred             HHHHHH
Q 023354          269 HILQAW  274 (283)
Q Consensus       269 ~l~~~~  274 (283)
                      +|...+
T Consensus       151 ~l~~~~  156 (157)
T cd04164         151 ALLELA  156 (157)
T ss_pred             HHHHhh
Confidence            987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.07  E-value=9.8e-11  Score=96.29  Aligned_cols=147  Identities=22%  Similarity=0.302  Sum_probs=82.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccC--CchHHHHHhCCCCCCChHHHHHHHHH
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP--EERIRAVETGGCPHAAIREDISINLG  160 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~--q~~~~~i~~~g~~~~~~~~~~~~~~~  160 (283)
                      .|+|+|.+++|||||+|+|+|..     . ..++-++++.+    ...|.+.  .....+++++|.......        
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~-----~-~v~n~pG~Tv~----~~~g~~~~~~~~~~lvDlPG~ysl~~~--------   63 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAK-----Q-KVGNWPGTTVE----KKEGIFKLGDQQVELVDLPGIYSLSSK--------   63 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS-----E-EEEESTTSSSE----EEEEEEEETTEEEEEEE----SSSSSS--------
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC-----c-eecCCCCCCee----eeeEEEEecCceEEEEECCCcccCCCC--------
Confidence            58999999999999999999963     2 23444554432    1222221  233456667764322110        


Q ss_pred             HHHHccccccCCCcccCCchHHHHHHHH---HHhcCCcEEEEeCCCCCC---chhhcCCcccccCEEEEEcCCcccccCC
Q 023354          161 PLEELSNLFKADLLLCESGGDNLAANFS---RELADYIIYIIDVSGGDK---IPRKGGPGITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       161 ~l~~l~~~~~~d~~i~eSgGq~q~~~ia---~al~~~~l~llDpt~g~~---l~~~~~~~i~~ad~ivi~K~g~i~~~g~  234 (283)
                                       |  +..+++..   ..-.|.+++++|++....   +..+. ......-.+++||+|.+...|-
T Consensus        64 -----------------s--~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql-~e~g~P~vvvlN~~D~a~~~g~  123 (156)
T PF02421_consen   64 -----------------S--EEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQL-LELGIPVVVVLNKMDEAERKGI  123 (156)
T ss_dssp             -----------------S--HHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHH-HHTTSSEEEEEETHHHHHHTTE
T ss_pred             -----------------C--cHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEEeCHHHHHHcCC
Confidence                             0  01111111   112357889999886321   10110 1123455999999999987664


Q ss_pred             hHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHH
Q 023354          235 DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI  270 (283)
Q Consensus       235 ~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l  270 (283)
                      ..+   ...++...+.|++++||+++.|+++|++.+
T Consensus       124 ~id---~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  124 EID---AEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             EE----HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             EEC---HHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            332   112222347899999999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01878 HflX HflX subfamily

Probab=99.05  E-value=1.6e-09  Score=92.60  Aligned_cols=75  Identities=25%  Similarity=0.321  Sum_probs=47.8

Q ss_pred             cCCcEEEEeCCCCCCchh-----hcCCcc---cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIPR-----KGGPGI---TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~-----~~~~~i---~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++.+++++|.+.......     .....+   ...-.+|+||.|+....  ...   .  .......+++++|++++.|+
T Consensus       121 ~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~--~~~---~--~~~~~~~~~~~~Sa~~~~gi  193 (204)
T cd01878         121 ADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE--ELE---E--RLEAGRPDAVFISAKTGEGL  193 (204)
T ss_pred             CCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH--HHH---H--HhhcCCCceEEEEcCCCCCH
Confidence            467899999765432110     000011   23458999999986542  111   1  12234568999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          264 EEIVNHILQA  273 (283)
Q Consensus       264 ~~l~~~l~~~  273 (283)
                      ++++++|...
T Consensus       194 ~~l~~~L~~~  203 (204)
T cd01878         194 DELLEAIEEL  203 (204)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.05  E-value=1.9e-09  Score=99.41  Aligned_cols=208  Identities=18%  Similarity=0.236  Sum_probs=108.6

Q ss_pred             CCccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHHH
Q 023354           30 GDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLALC  102 (283)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~  102 (283)
                      ....+..+.++..+......|.-|.....+.+..     +...-++. -..+.+.-+ -.-|+|+|.++|||||||++|+
T Consensus       100 ~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls  179 (335)
T PRK12299        100 TGELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVS  179 (335)
T ss_pred             CCcEEEEcCCCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHH
Confidence            3456677777777777778777666443333222     11111111 112222323 4579999999999999999998


Q ss_pred             hcccCCCcEEEEeecCCCCCHHHHHHhccccCC---chHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCc
Q 023354          103 KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE---ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG  179 (283)
Q Consensus       103 g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q---~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSg  179 (283)
                      +.- |.    +......+..     ..+|++.-   ..+.+++++|.....                           +-
T Consensus       180 ~a~-~~----va~ypfTT~~-----p~~G~v~~~~~~~~~i~D~PGli~ga---------------------------~~  222 (335)
T PRK12299        180 AAK-PK----IADYPFTTLH-----PNLGVVRVDDYKSFVIADIPGLIEGA---------------------------SE  222 (335)
T ss_pred             cCC-Cc----cCCCCCceeC-----ceEEEEEeCCCcEEEEEeCCCccCCC---------------------------Cc
Confidence            742 21    1111111111     12232210   112234444432110                           11


Q ss_pred             hHHHHHHHHHHh--cCCcEEEEeCCCCCC---ch---hh---cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhc
Q 023354          180 GDNLAANFSREL--ADYIIYIIDVSGGDK---IP---RK---GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMR  247 (283)
Q Consensus       180 Gq~q~~~ia~al--~~~~l~llDpt~g~~---l~---~~---~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~  247 (283)
                      +......+.+.+  ++..|+|+|.+....   +.   .+   +.. ....+-.||+||+|++.......+..... .. .
T Consensus       223 ~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~-~~-~  300 (335)
T PRK12299        223 GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE-LA-A  300 (335)
T ss_pred             cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH-HH-h
Confidence            111112222222  457899999775321   11   11   111 12456689999999865421111112111 11 2


Q ss_pred             CCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          248 DGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       248 ~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ...+++++||++++|+++++++|...+..
T Consensus       301 ~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        301 LGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            34689999999999999999999887754

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.05  E-value=2.7e-10  Score=93.12  Aligned_cols=141  Identities=22%  Similarity=0.242  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHH-Hhcc--ccCCchHHHHH-h-CCCCCCChHHHH
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFL-MRNG--ALPEERIRAVE-T-GGCPHAAIREDI  155 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~-~~ig--~v~q~~~~~i~-~-~g~~~~~~~~~~  155 (283)
                      +++++|++||||||+++.++..+.+. +++.++..|+..... ..+. .++.  -..+.+...+. . ++........  
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSR--   78 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccch--
Confidence            37899999999999999999988776 788888888754211 1110 0000  00000000000 0 0100000111  


Q ss_pred             HHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCC
Q 023354          156 SINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTD  227 (283)
Q Consensus       156 ~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g  227 (283)
                       ...+.++.+ ....+|.++.++.|-.+....+.+.+|..+++.-|..++.++..+..+++.||.+++||.|
T Consensus        79 -~~~~~~~~~-~~~~~D~iiIDtaG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~~~~~~~~~~k~~  148 (148)
T cd03114          79 -ATPEVIRVL-DAAGFDVIIVETVGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD  148 (148)
T ss_pred             -hHHHHHHHH-HhcCCCEEEEECCccChhhhhHHHhCCEEEEEECCCchhHHHHhhhhHhhhcCEEEEeCCC
Confidence             112233333 2247999999988866666556667788999999987777777777888999999999976

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=8.8e-10  Score=104.12  Aligned_cols=164  Identities=13%  Similarity=0.067  Sum_probs=105.6

Q ss_pred             CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +......+.|.|....-.-+...++... -.+++++|+||+||||+++++.+.+.|. |-+.+..           +.++
T Consensus       361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri  429 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI  429 (582)
T ss_pred             CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence            5566667778877666434455555544 6789999999999999999999988876 5544332           3567


Q ss_pred             cccCCchHHHHHh---------CCCCCCChHHHHHHHHHHHHHccccccC-CCccc-CCchHHHHHHHHHHhc-CCcEEE
Q 023354          131 GALPEERIRAVET---------GGCPHAAIREDISINLGPLEELSNLFKA-DLLLC-ESGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       131 g~v~q~~~~~i~~---------~g~~~~~~~~~~~~~~~~l~~l~~~~~~-d~~i~-eSgGq~q~~~ia~al~-~~~l~l  198 (283)
                      +|..|.-....+.         ..+|.. .++   .....|..|++.... ...+. -||||+-|++||.... .|-++|
T Consensus       430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~e---e~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV  505 (582)
T KOG0062|consen  430 KYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEE---EIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV  505 (582)
T ss_pred             cchhHhhhhHHHHHhHHHHHHHHhCCCC-CHH---HHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence            7777764422211         111111 222   334577777766533 22233 3999999999997766 598999


Q ss_pred             Ee-CCCCCCchh----------h-cCCc-c--------cccCEEEEEcCCcccc
Q 023354          199 ID-VSGGDKIPR----------K-GGPG-I--------TQADLLVINKTDLASA  231 (283)
Q Consensus       199 lD-pt~g~~l~~----------~-~~~~-i--------~~ad~ivi~K~g~i~~  231 (283)
                      || ||+.+|...          . .+.. +        ..|+.+++.+.|.+..
T Consensus       506 LDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  506 LDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             ecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            98 999765321          1 1110 0        4677788888887755

>cd01898 Obg Obg subfamily

Probab=99.04  E-value=2.2e-09  Score=88.44  Aligned_cols=80  Identities=21%  Similarity=0.405  Sum_probs=49.9

Q ss_pred             cCCcEEEEeCCCC-CCc---hh---h---cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGG-DKI---PR---K---GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g-~~l---~~---~---~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      ++..++++|++.. ..+   ..   .   ... ....+-.+|+||.|+..... ..+.. ..........+++.+|++++
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~-~~~~~~~~~~~~~~~Sa~~~  156 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFELL-KELLKELWGKPVFPISALTG  156 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHHHH-HHHHhhCCCCCEEEEecCCC
Confidence            5788999998765 111   11   0   111 11345689999999865422 22222 22222223567899999999


Q ss_pred             CCHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQA  273 (283)
Q Consensus       261 ~gi~~l~~~l~~~  273 (283)
                      .|++++++++.+.
T Consensus       157 ~gi~~l~~~i~~~  169 (170)
T cd01898         157 EGLDELLRKLAEL  169 (170)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.02  E-value=2.7e-10  Score=117.57  Aligned_cols=167  Identities=18%  Similarity=0.130  Sum_probs=117.2

Q ss_pred             Cccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccC----CCcEEEEeecCCCCCHHHHHHhccccCCchH-------
Q 023354           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRD----KYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------  138 (283)
Q Consensus        71 ~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~----~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------  138 (283)
                      .+++++.- ++|+.+.++||+||||||||++|+|.+..    .|+|..++.+.....+   .+.++|.+|...       
T Consensus       130 il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lTV  206 (1391)
T KOG0065|consen  130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELTV  206 (1391)
T ss_pred             eecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeEE
Confidence            45566655 45999999999999999999999997652    3689999988775544   456888888653       


Q ss_pred             -HHHHhC-CCCCC-------ChHHHHH-HHHHHHHHccccccCCCcccC------CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          139 -RAVETG-GCPHA-------AIREDIS-INLGPLEELSNLFKADLLLCE------SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       139 -~~i~~~-g~~~~-------~~~~~~~-~~~~~l~~l~~~~~~d~~i~e------SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                       +-+++. .|...       ..++... .....++.+++..-.|..++.      |||||+|+.++..++ .+.++..| 
T Consensus       207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De  286 (1391)
T KOG0065|consen  207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE  286 (1391)
T ss_pred             eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence             223322 22111       1111111 344678888988888888876      999999999998887 46666666 


Q ss_pred             CCCCCCchh-------------hc------------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 VSGGDKIPR-------------KG------------GPGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 pt~g~~l~~-------------~~------------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|+|.|-..             ..            ...+..-|.|+++..|.+++.|+..+++.
T Consensus       287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~  351 (1391)
T KOG0065|consen  287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP  351 (1391)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence            898865210             00            11246789999999999999998766654

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.01  E-value=1.3e-09  Score=104.25  Aligned_cols=143  Identities=20%  Similarity=0.094  Sum_probs=86.0

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .+.+..+...-|++......+.+|..+ |..+-|+||||||||+|++.|.|+.+-. |++..-...    .+    +.+-
T Consensus       433 ~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~----~~----~~lf  504 (659)
T KOG0060|consen  433 AIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG----GP----KDLF  504 (659)
T ss_pred             eEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC----CC----CceE
Confidence            355555666655564445566888755 9999999999999999999999998755 776532211    01    3467


Q ss_pred             ccCCchH-------HHHHhC---CCCCC--ChHHHHHHHHHHH--HHc-cccccCCCc-ccC-----CchHHHHHHHHHH
Q 023354          132 ALPEERI-------RAVETG---GCPHA--AIREDISINLGPL--EEL-SNLFKADLL-LCE-----SGGDNLAANFSRE  190 (283)
Q Consensus       132 ~v~q~~~-------~~i~~~---g~~~~--~~~~~~~~~~~~l--~~l-~~~~~~d~~-i~e-----SgGq~q~~~ia~a  190 (283)
                      ||||.|.       +++..+   ..+..  ...+++.+.++.+  ..+ .+..+.|.. ..+     |+|++||+++||.
T Consensus       505 flPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARL  584 (659)
T KOG0060|consen  505 FLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARL  584 (659)
T ss_pred             EecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHH
Confidence            8888874       112111   11111  1112222222211  111 122344422 222     9999999999999


Q ss_pred             hcC-CcEEEEe-CCCC
Q 023354          191 LAD-YIIYIID-VSGG  204 (283)
Q Consensus       191 l~~-~~l~llD-pt~g  204 (283)
                      +.. |.+.++| .|+.
T Consensus       585 fy~kPk~AiLDE~TSA  600 (659)
T KOG0060|consen  585 FYHKPKFAILDECTSA  600 (659)
T ss_pred             HhcCCceEEeechhhh
Confidence            874 9999999 5554

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.01  E-value=7.8e-09  Score=82.88  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=48.4

Q ss_pred             cCCcEEEEeCCCCCCchh-hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI  270 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~-~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l  270 (283)
                      ++..++++|.+....... ........+..+++||+|+.... ...+...+.. +.....+++++|+++|.|++++++++
T Consensus        63 ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528        63 ADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEAD-VDIERAKELL-ETAGAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             CCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcc-cCHHHHHHHH-HHcCCCcEEEEecCCCCCHHHHHHHH
Confidence            468899999776542211 11111123568899999986431 2223323222 23334478999999999999999887


Q ss_pred             H
Q 023354          271 L  271 (283)
Q Consensus       271 ~  271 (283)
                      .
T Consensus       141 ~  141 (142)
T TIGR02528       141 N  141 (142)
T ss_pred             h
Confidence            4

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.99  E-value=5.2e-09  Score=100.70  Aligned_cols=207  Identities=18%  Similarity=0.192  Sum_probs=110.5

Q ss_pred             CccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHHHh
Q 023354           31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      ...+..+..+..+....+.|.-|.....+.+..     +....++. -..+.+.-+ -.-|+|+|.++|||||||+.|++
T Consensus       102 ~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~  181 (500)
T PRK12296        102 GEVLADLVGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSA  181 (500)
T ss_pred             CcEEeeeccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhc
Confidence            356777888888888888877666444433322     11111111 122233323 45799999999999999999998


Q ss_pred             cccCCCcEEEEeecCCCCCHHHHHHhccccC--CchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchH
Q 023354          104 FLRDKYSLAAVTNDIFTKEDGEFLMRNGALP--EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD  181 (283)
Q Consensus       104 ~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~--q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq  181 (283)
                      .- |    .+......+..     ..+|++.  ...+.+++++|.....                           |.|.
T Consensus       182 ak-p----kIadypfTTl~-----P~lGvv~~~~~~f~laDtPGliega---------------------------s~g~  224 (500)
T PRK12296        182 AK-P----KIADYPFTTLV-----PNLGVVQAGDTRFTVADVPGLIPGA---------------------------SEGK  224 (500)
T ss_pred             CC-c----cccccCccccc-----ceEEEEEECCeEEEEEECCCCcccc---------------------------chhh
Confidence            52 2    11111112211     1233321  1112234455532110                           1111


Q ss_pred             HHHHHHHHH--hcCCcEEEEeCCCC---CC----ch---h---hcC----------CcccccCEEEEEcCCcccccCChH
Q 023354          182 NLAANFSRE--LADYIIYIIDVSGG---DK----IP---R---KGG----------PGITQADLLVINKTDLASAIGADL  236 (283)
Q Consensus       182 ~q~~~ia~a--l~~~~l~llDpt~g---~~----l~---~---~~~----------~~i~~ad~ivi~K~g~i~~~g~~~  236 (283)
                      .....+.+.  -++.+|+|+|.+..   .+    +.   .   .+.          ......-+||+||+|+.... ...
T Consensus       225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~-el~  303 (500)
T PRK12296        225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR-ELA  303 (500)
T ss_pred             HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-HHH
Confidence            111112222  24678888997642   11    11   0   111          11234568999999986431 112


Q ss_pred             HHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          237 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       237 e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      +.+...+..  .+.+++.+|++++.|+++|+.+|...++..
T Consensus       304 e~l~~~l~~--~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        304 EFVRPELEA--RGWPVFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             HHHHHHHHH--cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            222222222  256899999999999999999998877654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.99  E-value=2.2e-09  Score=102.42  Aligned_cols=86  Identities=26%  Similarity=0.393  Sum_probs=57.5

Q ss_pred             HhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccCCC
Q 023354          190 ELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHGLG  262 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g~g  262 (283)
                      ..+|..|+|+|++.+...+...    ......+..+++||+|++..  ...+.+.+.+...   .+..|++++||++|.|
T Consensus       254 ~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~--~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~g  331 (435)
T PRK00093        254 ERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE--KTMEEFKKELRRRLPFLDYAPIVFISALTGQG  331 (435)
T ss_pred             HHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH--HHHHHHHHHHHHhcccccCCCEEEEeCCCCCC
Confidence            3457899999988764322111    00113456899999998732  2233333333332   3568999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 023354          263 VEEIVNHILQAWEAS  277 (283)
Q Consensus       263 i~~l~~~l~~~~~~~  277 (283)
                      ++++++++...++.+
T Consensus       332 v~~l~~~i~~~~~~~  346 (435)
T PRK00093        332 VDKLLEAIDEAYENA  346 (435)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998877654

>cd01895 EngA2 EngA2 subfamily

Probab=98.98  E-value=5.2e-09  Score=85.69  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=53.7

Q ss_pred             hcCCcEEEEeCCCCCCchh----hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC---CCCeEEEEeccCCCH
Q 023354          191 LADYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD---GGPFIFAQVKHGLGV  263 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~~----~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~---~~~i~~isa~~g~gi  263 (283)
                      -++..++++|+........    ........+..+++||.|+........+...+.+.+..+   ..+++.+|++++.|+
T Consensus        84 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  163 (174)
T cd01895          84 RADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGV  163 (174)
T ss_pred             hcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCH
Confidence            4578899999765422111    000112345689999999875532233333444444433   578999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      +++++++...|
T Consensus       164 ~~~~~~l~~~~  174 (174)
T cd01895         164 DKLFDAIDEVY  174 (174)
T ss_pred             HHHHHHHHHhC
Confidence            99999987653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04154 Arl2 Arl2 subfamily

Probab=98.97  E-value=3e-09  Score=88.41  Aligned_cols=150  Identities=18%  Similarity=0.164  Sum_probs=82.1

Q ss_pred             cccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHH
Q 023354           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE  153 (283)
Q Consensus        74 ~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~  153 (283)
                      ...+..+..+++|+|++|||||||++.+++...+.            ..     ..+|+..              ..   
T Consensus         7 ~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~------------~~-----~t~g~~~--------------~~---   52 (173)
T cd04154           7 KQKLKEREMRILILGLDNAGKTTILKKLLGEDIDT------------IS-----PTLGFQI--------------KT---   52 (173)
T ss_pred             hhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCC------------cC-----Cccccce--------------EE---
Confidence            34444455689999999999999999998741110            00     0011100              00   


Q ss_pred             HHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCchh-------hcC--CcccccCEE
Q 023354          154 DISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR-------KGG--PGITQADLL  221 (283)
Q Consensus       154 ~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~~-------~~~--~~i~~ad~i  221 (283)
                                 + ........+++.+|+...-.+....   ++..++++|.+....+..       ...  .....+-.|
T Consensus        53 -----------~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ii  120 (173)
T cd04154          53 -----------L-EYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLI  120 (173)
T ss_pred             -----------E-EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence                       0 0001222344455654322222222   357899999776421111       000  011334589


Q ss_pred             EEEcCCcccccCChHHHHhHHHHh---hcCCCCeEEEEeccCCCHHHHHHHHH
Q 023354          222 VINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVKHGLGVEEIVNHIL  271 (283)
Q Consensus       222 vi~K~g~i~~~g~~~e~~~~~~~~---~~~~~~i~~isa~~g~gi~~l~~~l~  271 (283)
                      ++||.|+....  ..+.+...+..   .....+++.+||++|.|++++++++.
T Consensus       121 v~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         121 LANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             EEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence            99999986432  22333222211   12345799999999999999999885

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.96  E-value=9.1e-09  Score=84.09  Aligned_cols=80  Identities=21%  Similarity=0.158  Sum_probs=49.6

Q ss_pred             CCcEEEEeCCCCCCchh---h---c--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKIPR---K---G--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~---~---~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..++++|++....+..   .   .  ...-...-.+++||.|+........+.........  +.+++++|+++|.|+.
T Consensus        75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~  152 (163)
T cd01860          75 AAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN--GLLFFETSAKTGENVN  152 (163)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc--CCEEEEEECCCCCCHH
Confidence            57899999876532211   0   0  00012334788999997743222333333333322  3779999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          265 EIVNHILQAW  274 (283)
Q Consensus       265 ~l~~~l~~~~  274 (283)
                      +++++|.+..
T Consensus       153 ~l~~~l~~~l  162 (163)
T cd01860         153 ELFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHHh
Confidence            9999987653

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.96  E-value=8.5e-09  Score=97.77  Aligned_cols=204  Identities=17%  Similarity=0.187  Sum_probs=109.2

Q ss_pred             CCccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHHH
Q 023354           30 GDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLALC  102 (283)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~  102 (283)
                      ....+..+..+..+....+.|.-|.....+.+..     ++....+. -..+.+.-+ -.-|+|+|.++|||||||++|+
T Consensus       100 ~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt  179 (424)
T PRK12297        100 TGEVIADLVEPGQEVVVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVS  179 (424)
T ss_pred             CCcEEeeeccCCcEEEEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHH
Confidence            3456777888888888888888776544444322     22212221 112222223 3479999999999999999999


Q ss_pred             hcccCCCcEEEEeecCCCCCHHHHHHhccccC---CchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCc
Q 023354          103 KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP---EERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG  179 (283)
Q Consensus       103 g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~---q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSg  179 (283)
                      +.- |    .+......+..+     .+|++.   ...+.+++++|.....                           |-
T Consensus       180 ~ak-~----kIa~ypfTTl~P-----nlG~v~~~~~~~~~laD~PGliega---------------------------~~  222 (424)
T PRK12297        180 NAK-P----KIANYHFTTLVP-----NLGVVETDDGRSFVMADIPGLIEGA---------------------------SE  222 (424)
T ss_pred             cCC-C----ccccCCcceece-----EEEEEEEeCCceEEEEECCCCcccc---------------------------cc
Confidence            842 1    111111111111     223221   1122334455542110                           11


Q ss_pred             hHHHHHHHHHH--hcCCcEEEEeCCCC--CCch-------h---hcCC-cccccCEEEEEcCCcccccCChHHHHhHHHH
Q 023354          180 GDNLAANFSRE--LADYIIYIIDVSGG--DKIP-------R---KGGP-GITQADLLVINKTDLASAIGADLAVMERDAL  244 (283)
Q Consensus       180 Gq~q~~~ia~a--l~~~~l~llDpt~g--~~l~-------~---~~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~  244 (283)
                      |......+.+.  -++.+|+|+|.+..  .+..       .   .+.. .....-.||+||+|+. .   ..+.+.. +.
T Consensus       223 ~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~-~---~~e~l~~-l~  297 (424)
T PRK12297        223 GVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP-E---AEENLEE-FK  297 (424)
T ss_pred             cchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc-C---CHHHHHH-HH
Confidence            11111112222  24678999997642  1111       1   1111 1245668999999962 2   2222222 22


Q ss_pred             hhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          245 RMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       245 ~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      +... .+++++||++++|+++|+++|...+..
T Consensus       298 ~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        298 EKLG-PKVFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             HHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            2222 689999999999999999999877654

>cd04113 Rab4 Rab4 subfamily

Probab=98.95  E-value=4.5e-09  Score=85.96  Aligned_cols=96  Identities=21%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354          175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      +++++|+.....+.+..   ++..++++|++....+   ....     ...-..+-.++.||.|.........+......
T Consensus        53 l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~  132 (161)
T cd04113          53 IWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFA  132 (161)
T ss_pred             EEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHH
Confidence            44556654433333333   2578999998875321   1110     00113345889999998754222223322222


Q ss_pred             HhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      ..  .+.+++.+|++++.|++++++++.+
T Consensus       133 ~~--~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113         133 QE--NGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             HH--cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            22  3478999999999999999999865

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.95  E-value=4.9e-09  Score=99.79  Aligned_cols=86  Identities=22%  Similarity=0.309  Sum_probs=57.4

Q ss_pred             hcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhc---CCCCeEEEEeccCCCH
Q 023354          191 LADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVKHGLGV  263 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~---~~~~i~~isa~~g~gi  263 (283)
                      -+|..|+|+|++.+.......    ......+..+++||+|++. .....+.+...+...+   .+.+++++||++|.|+
T Consensus       254 ~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v  332 (429)
T TIGR03594       254 RADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGV  332 (429)
T ss_pred             hCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCH
Confidence            457899999988764322110    0011346699999999982 1122334444444333   4679999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 023354          264 EEIVNHILQAWEAS  277 (283)
Q Consensus       264 ~~l~~~l~~~~~~~  277 (283)
                      +++++++...++.+
T Consensus       333 ~~l~~~i~~~~~~~  346 (429)
T TIGR03594       333 DKLLDAIDEVYENA  346 (429)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998877644

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=98.95  E-value=6.7e-09  Score=85.42  Aligned_cols=78  Identities=21%  Similarity=0.267  Sum_probs=48.5

Q ss_pred             cCCcEEEEeCCCCCCc--hh------hcCCcc-cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI--PR------KGGPGI-TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l--~~------~~~~~i-~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      .+..|+++|++.....  ..      ...... ...-.+++||.|.....  ....... . ......+++.+||++|.|
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~--~~~~~~~-~-~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE--DLSEIEE-E-EELEGEEVLKISTLTEEG  155 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh--hHHHHHH-h-hhhccCceEEEEecccCC
Confidence            4678899998753211  10      011111 34558999999986431  2111111 1 222457899999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          263 VEEIVNHILQA  273 (283)
Q Consensus       263 i~~l~~~l~~~  273 (283)
                      ++++++++...
T Consensus       156 i~~l~~~l~~~  166 (168)
T cd01897         156 VDEVKNKACEL  166 (168)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.95  E-value=5.4e-09  Score=85.45  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=49.3

Q ss_pred             cCCcEEEEeCCCCC---Cchh-------hcCC---cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEec
Q 023354          192 ADYIIYIIDVSGGD---KIPR-------KGGP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK  258 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~-------~~~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~  258 (283)
                      ++..|+++|++...   .+..       ....   .....-.+|.||.|+........+....... . .+.+++.+|++
T Consensus        73 ~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~  150 (168)
T cd04119          73 TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAE-S-KGFKYFETSAC  150 (168)
T ss_pred             CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHH-H-cCCeEEEEECC
Confidence            35789999987632   1111       1110   1123458999999986322122333322222 2 23678999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 023354          259 HGLGVEEIVNHILQAW  274 (283)
Q Consensus       259 ~g~gi~~l~~~l~~~~  274 (283)
                      ++.|+++++++|...+
T Consensus       151 ~~~gi~~l~~~l~~~l  166 (168)
T cd04119         151 TGEGVNEMFQTLFSSI  166 (168)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999987643

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK13768 GTPase; Provisional

Probab=98.95  E-value=1.3e-08  Score=90.45  Aligned_cols=186  Identities=20%  Similarity=0.220  Sum_probs=103.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCCCCHHHHHHhccccCCchH-------H-HHHhCCCCCCChH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFTKEDGEFLMRNGALPEERI-------R-AVETGGCPHAAIR  152 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~-~i~~~g~~~~~~~  152 (283)
                      .++.+.|+.||||||+...++..+...| ++.++..|+....       +++.+....       . +...+..+.....
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~-------~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~   75 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEY-------LPYTPDFDVRDYVTAREIMKKYGLGPNGALI   75 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcccc-------CCCCCCcchhhheeHHHHHHHcCCCCchHHH
Confidence            3688999999999999999998776554 6777777765311       111111100       0 1111222322111


Q ss_pred             HH---HHHHHHHHHHccccccCCCcccCCchHHHHHH-------HHHHh----cCCcEEEEeCCCCCCch---hhc----
Q 023354          153 ED---ISINLGPLEELSNLFKADLLLCESGGDNLAAN-------FSREL----ADYIIYIIDVSGGDKIP---RKG----  211 (283)
Q Consensus       153 ~~---~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~-------ia~al----~~~~l~llDpt~g~~l~---~~~----  211 (283)
                      ..   .......+.........+.++++..|+.....       +.+.+    .+.+++|+|.+.+....   ...    
T Consensus        76 ~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~  155 (253)
T PRK13768         76 ASVDLLLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLAL  155 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHH
Confidence            00   11111122221122345888888888644221       22333    34789999975542211   000    


Q ss_pred             --CCcccccCEEEEEcCCcccccCChHHHHhHH----------------------------HHhhcCCCCeEEEEeccCC
Q 023354          212 --GPGITQADLLVINKTDLASAIGADLAVMERD----------------------------ALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       212 --~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~----------------------------~~~~~~~~~i~~isa~~g~  261 (283)
                        .......-.+|+||.|++...  ..+.+.+.                            +.+..+..+++.+|++++.
T Consensus       156 ~~~~~~~~~~i~v~nK~D~~~~~--~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~  233 (253)
T PRK13768        156 SVQLRLGLPQIPVLNKADLLSEE--ELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE  233 (253)
T ss_pred             HHHHHcCCCEEEEEEhHhhcCch--hHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc
Confidence              001244668999999998652  22222221                            1122344689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAWEA  276 (283)
Q Consensus       262 gi~~l~~~l~~~~~~  276 (283)
                      |+++|+++|.+.++.
T Consensus       234 gl~~L~~~I~~~l~~  248 (253)
T PRK13768        234 GFDELYAAIQEVFCG  248 (253)
T ss_pred             CHHHHHHHHHHHcCC
Confidence            999999999987753

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=98.94  E-value=8.1e-09  Score=95.14  Aligned_cols=203  Identities=18%  Similarity=0.232  Sum_probs=106.0

Q ss_pred             ccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCCC-cccccccCC-CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           32 STATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAPP-ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ..+..+.++..+......|.-|.....+.+..     +....++. -..+.+.-+ -.-|+|+|.+||||||||++|++.
T Consensus       101 ~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~  180 (329)
T TIGR02729       101 ELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAA  180 (329)
T ss_pred             cEEeEeccCCcEEEecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcC
Confidence            56677777777777788877666443333221     11111111 112223323 457999999999999999999884


Q ss_pred             ccCCCcEEEEeecCCCCCHHHHHHhccccC--C-chHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchH
Q 023354          105 LRDKYSLAAVTNDIFTKEDGEFLMRNGALP--E-ERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD  181 (283)
Q Consensus       105 ~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~--q-~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq  181 (283)
                      ..     .+...++.+..     ..+|++.  . ..+.+++++|.....                           +.+.
T Consensus       181 ~~-----~va~y~fTT~~-----p~ig~v~~~~~~~~~i~D~PGli~~a---------------------------~~~~  223 (329)
T TIGR02729       181 KP-----KIADYPFTTLV-----PNLGVVRVDDGRSFVIADIPGLIEGA---------------------------SEGA  223 (329)
T ss_pred             Cc-----cccCCCCCccC-----CEEEEEEeCCceEEEEEeCCCcccCC---------------------------cccc
Confidence            21     11111111111     1223221  0 111233444432110                           1111


Q ss_pred             HHHHHHHHHh--cCCcEEEEeCCCCC--C----ch---h---hcCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhh
Q 023354          182 NLAANFSREL--ADYIIYIIDVSGGD--K----IP---R---KGGP-GITQADLLVINKTDLASAIGADLAVMERDALRM  246 (283)
Q Consensus       182 ~q~~~ia~al--~~~~l~llDpt~g~--~----l~---~---~~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~  246 (283)
                      .....+.+.+  ++.+++|+|.+...  +    +.   .   .+.. ....+-.||+||+|++..  ...+.+.+.+.+.
T Consensus       224 gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~  301 (329)
T TIGR02729       224 GLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKA  301 (329)
T ss_pred             cHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHH
Confidence            1112222222  46789999976531  1    11   1   1111 123456899999998654  2222222333322


Q ss_pred             cCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          247 RDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       247 ~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      . +.+++++||++++|+++++++|...+
T Consensus       302 ~-~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       302 L-GKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             c-CCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            2 46899999999999999999997654

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.94  E-value=6.9e-09  Score=100.15  Aligned_cols=86  Identities=22%  Similarity=0.159  Sum_probs=55.9

Q ss_pred             hcCCcEEEEeCCCCCCchhhc-C---CcccccCEEEEEcCCcccccCChHHHHhHHHH---hhcCCCCeEEEEeccCCCH
Q 023354          191 LADYIIYIIDVSGGDKIPRKG-G---PGITQADLLVINKTDLASAIGADLAVMERDAL---RMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~~~~-~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~---~~~~~~~i~~isa~~g~gi  263 (283)
                      -++..|+++|++.+...+... .   .....+-.||+||+|++..  .....+...+.   ....+.|++++||++|.|+
T Consensus       293 ~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~--~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv  370 (472)
T PRK03003        293 AAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDE--DRRYYLEREIDRELAQVPWAPRVNISAKTGRAV  370 (472)
T ss_pred             cCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh--hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCH
Confidence            357899999988764322110 0   0013355899999998743  12222222222   2234679999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 023354          264 EEIVNHILQAWEAST  278 (283)
Q Consensus       264 ~~l~~~l~~~~~~~~  278 (283)
                      +++++.+...++.+.
T Consensus       371 ~~lf~~i~~~~~~~~  385 (472)
T PRK03003        371 DKLVPALETALESWD  385 (472)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998876543

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.93  E-value=7.4e-09  Score=84.42  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=56.3

Q ss_pred             ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhh---cC---CcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354          175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRK---GG---PGITQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~---~~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                      ++++.|+.....++...   ++..++++|.+...   .+...   ..   .....+-.+++||.|+........+.....
T Consensus        52 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~  131 (164)
T cd04139          52 ILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANL  131 (164)
T ss_pred             EEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHH
Confidence            34455544333333222   35678888865431   11111   00   112445689999999875211222322222


Q ss_pred             HHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       243 ~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ..  ..+.+++.+|++++.|++++++++...+.
T Consensus       132 ~~--~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         132 AR--QWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             HH--HhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            22  23468999999999999999999986653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04171 SelB SelB subfamily

Probab=98.93  E-value=1.2e-08  Score=83.08  Aligned_cols=82  Identities=15%  Similarity=0.099  Sum_probs=47.3

Q ss_pred             hcCCcEEEEeCCCCCCch--hh--cCCcccc-cCEEEEEcCCcccccC--ChHHHHhHHHHhh-cCCCCeEEEEeccCCC
Q 023354          191 LADYIIYIIDVSGGDKIP--RK--GGPGITQ-ADLLVINKTDLASAIG--ADLAVMERDALRM-RDGGPFIFAQVKHGLG  262 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~--~~--~~~~i~~-ad~ivi~K~g~i~~~g--~~~e~~~~~~~~~-~~~~~i~~isa~~g~g  262 (283)
                      -++..++++|.+.+....  ..  ....... .-.+++||.|+.....  ...+.+.+.+... ....+++++|++++.|
T Consensus        74 ~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          74 GIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             cCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            357899999987632111  00  0000112 3479999999864310  0011112222211 1357899999999999


Q ss_pred             HHHHHHHHHH
Q 023354          263 VEEIVNHILQ  272 (283)
Q Consensus       263 i~~l~~~l~~  272 (283)
                      ++++++++..
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.93  E-value=4.5e-09  Score=95.06  Aligned_cols=213  Identities=17%  Similarity=0.188  Sum_probs=121.6

Q ss_pred             ccccCCCCccceeeecCCCCcccCCCCCCCccccccCCCCCCCCCCCCc---------ccccccCC-CcEEEEEcCCCCc
Q 023354           24 THEKNHGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPGYFSRRAPPI---------LSRNFNER-AFTVGIGGPVGTG   93 (283)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-g~~v~ilG~nGsG   93 (283)
                      ...|....+.+.-++.+..+......|..|....++.++.   .+.|..         ..+.+.-+ -.=|+|+|.++||
T Consensus        95 ~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~---nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaG  171 (369)
T COG0536          95 VVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSV---NRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAG  171 (369)
T ss_pred             EEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcCcc---cCCcccCCCCCCCceEEEEEEEeeecccccccCCCCc
Confidence            3445555677777888888888888887666444433333   332221         12222222 3358999999999


Q ss_pred             HHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCC---chHHHHHhCCCCCCChHHHHHHHHHHHHHcccccc
Q 023354           94 KTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE---ERIRAVETGGCPHAAIREDISINLGPLEELSNLFK  170 (283)
Q Consensus        94 KSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q---~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~  170 (283)
                      |||||+.++..-+     .|..-++.++.+     ++|+|..   +++.+-+.+|.                        
T Consensus       172 KSTlls~vS~AkP-----KIadYpFTTL~P-----nLGvV~~~~~~sfv~ADIPGL------------------------  217 (369)
T COG0536         172 KSTLLSAVSAAKP-----KIADYPFTTLVP-----NLGVVRVDGGESFVVADIPGL------------------------  217 (369)
T ss_pred             HHHHHHHHhhcCC-----cccCCccccccC-----cccEEEecCCCcEEEecCccc------------------------
Confidence            9999999988532     223333333322     4555431   11112222222                        


Q ss_pred             CCCcccCCchHHHHHHHHHHhc--CCcEEEEeCCCCC--Cchh----------hcC-CcccccCEEEEEcCCcccccCCh
Q 023354          171 ADLLLCESGGDNLAANFSRELA--DYIIYIIDVSGGD--KIPR----------KGG-PGITQADLLVINKTDLASAIGAD  235 (283)
Q Consensus       171 ~d~~i~eSgGq~q~~~ia~al~--~~~l~llDpt~g~--~l~~----------~~~-~~i~~ad~ivi~K~g~i~~~g~~  235 (283)
                         +-..|.|--.=..+.|-+-  ...+.|+|.+..+  +..+          ++. ......-.|++||.|.+... +.
T Consensus       218 ---IEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~  293 (369)
T COG0536         218 ---IEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EE  293 (369)
T ss_pred             ---ccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HH
Confidence               1111444333333333333  3578889955432  2111          111 12355668999999966542 34


Q ss_pred             HHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          236 LAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       236 ~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      .+.+.+.+.+...+...+++|+.+++|+++|+..+.+.++..
T Consensus       294 ~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         294 LEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             HHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence            555556666655565555599999999999999988877654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=98.93  E-value=7e-09  Score=85.11  Aligned_cols=81  Identities=16%  Similarity=0.196  Sum_probs=50.5

Q ss_pred             hcCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHh--------hcCCCCeEEEEec
Q 023354          191 LADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALR--------MRDGGPFIFAQVK  258 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~--------~~~~~~i~~isa~  258 (283)
                      .++..++++|++.+......    ..........+++||.|+....  . +.+...+..        .....+++.+|++
T Consensus        73 ~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  149 (168)
T cd01887          73 LTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN--P-ERVKNELSELGLQGEDEWGGDVQIVPTSAK  149 (168)
T ss_pred             hcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc--H-HHHHHHHHHhhccccccccCcCcEEEeecc
Confidence            45788999998875321110    0011244568999999986431  1 111111111        1123589999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 023354          259 HGLGVEEIVNHILQAW  274 (283)
Q Consensus       259 ~g~gi~~l~~~l~~~~  274 (283)
                      +|.|+++++++|....
T Consensus       150 ~~~gi~~l~~~l~~~~  165 (168)
T cd01887         150 TGEGIDDLLEAILLLA  165 (168)
T ss_pred             cCCCHHHHHHHHHHhh
Confidence            9999999999997754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.92  E-value=5.7e-10  Score=85.81  Aligned_cols=62  Identities=26%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      .+++.++|..+ |++++|+||+|||||||+++++     .|++.+.+.++...+..+..+.+++++|.
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~   65 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL   65 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh
Confidence            46778888754 8999999999999999999987     68899999988776666666667777775

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG2262 HflX GTPases [General function prediction only]

Probab=98.92  E-value=4.7e-09  Score=97.03  Aligned_cols=157  Identities=20%  Similarity=0.165  Sum_probs=86.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL  159 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~  159 (283)
                      .-+.|+|+|..+||||||+|.|++.-..     ..+.-+.+.++...+-.++  ......+-+|-|+...-.....+...
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~-----~~d~LFATLdpttR~~~l~--~g~~vlLtDTVGFI~~LP~~LV~AFk  263 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVY-----VADQLFATLDPTTRRIELG--DGRKVLLTDTVGFIRDLPHPLVEAFK  263 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCee-----ccccccccccCceeEEEeC--CCceEEEecCccCcccCChHHHHHHH
Confidence            3579999999999999999999975322     1222222333321111111  01111223344543322222222222


Q ss_pred             HHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhc---------CCcccccCEEEEEcCCccc
Q 023354          160 GPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG---------GPGITQADLLVINKTDLAS  230 (283)
Q Consensus       160 ~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~---------~~~i~~ad~ivi~K~g~i~  230 (283)
                      ..|++.                        .-+|..+.|+|.+... +..+.         ...-...-++++||.|++.
T Consensus       264 sTLEE~------------------------~~aDlllhVVDaSdp~-~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~  318 (411)
T COG2262         264 STLEEV------------------------KEADLLLHVVDASDPE-ILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE  318 (411)
T ss_pred             HHHHHh------------------------hcCCEEEEEeecCChh-HHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence            233332                        1346789999977642 11110         0011345689999999986


Q ss_pred             ccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          231 AIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       231 ~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ..-     ....+....+  +.+++||++|.|++.|.+.|.....
T Consensus       319 ~~~-----~~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         319 DEE-----ILAELERGSP--NPVFISAKTGEGLDLLRERIIELLS  356 (411)
T ss_pred             chh-----hhhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhh
Confidence            521     1122222222  5889999999999999999988765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.92  E-value=5.8e-09  Score=105.39  Aligned_cols=84  Identities=18%  Similarity=0.104  Sum_probs=57.0

Q ss_pred             cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHh---hcCCCCeEEEEeccCCCHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~---~~~~~~i~~isa~~g~gi~  264 (283)
                      ++..++++|++.+...+...    ......+-.||+||+|++..  ...+.+...+..   ..++.+++++||++|.|++
T Consensus       533 advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~--~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~  610 (712)
T PRK09518        533 SELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE--FRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTN  610 (712)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh--hHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHH
Confidence            56889999988764332110    00113466999999998753  223344433333   2356788999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 023354          265 EIVNHILQAWEAS  277 (283)
Q Consensus       265 ~l~~~l~~~~~~~  277 (283)
                      ++++.+.+.++.+
T Consensus       611 ~L~~~i~~~~~~~  623 (712)
T PRK09518        611 RLAPAMQEALESW  623 (712)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887754

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.91  E-value=1.2e-09  Score=93.69  Aligned_cols=30  Identities=13%  Similarity=0.124  Sum_probs=25.4

Q ss_pred             CchHHHHHHHHHHhcCCcEEEEe-CCCCCCc
Q 023354          178 SGGDNLAANFSRELADYIIYIID-VSGGDKI  207 (283)
Q Consensus       178 SgGq~q~~~ia~al~~~~l~llD-pt~g~~l  207 (283)
                      |+|++|+..+++++.++.++++| |+++.+.
T Consensus        93 s~g~~~~~~i~~~~~~p~llllDEp~~glD~  123 (200)
T cd03280          93 SSHMKNIARILQHADPDSLVLLDELGSGTDP  123 (200)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEcCCCCCCCH
Confidence            89999999999887788888888 8888654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.91  E-value=8.9e-09  Score=82.93  Aligned_cols=80  Identities=15%  Similarity=0.193  Sum_probs=45.9

Q ss_pred             cCCcEEEEeCCCCCCch-------hhcCC--cccccCEEEEEcCCcccccCChHHHHhHHHHhh--cCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDKIP-------RKGGP--GITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~-------~~~~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~--~~~~~i~~isa~~g  260 (283)
                      ++.+++++|.+....+.       .....  ....+-.+++||.|..... ...+.........  ....+++.+|++++
T Consensus        68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  146 (159)
T cd04159          68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-SVDELIEQMNLKSITDREVSCYSISCKEK  146 (159)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-CHHHHHHHhCcccccCCceEEEEEEeccC
Confidence            46788999977532211       00000  0123447889999976441 1122221111111  12356799999999


Q ss_pred             CCHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQ  272 (283)
Q Consensus       261 ~gi~~l~~~l~~  272 (283)
                      .|+++++++|.+
T Consensus       147 ~gi~~l~~~l~~  158 (159)
T cd04159         147 TNIDIVLDWLIK  158 (159)
T ss_pred             CChHHHHHHHhh
Confidence            999999999864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01863 Rab18 Rab18 subfamily

Probab=98.91  E-value=1.5e-08  Score=82.69  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=56.9

Q ss_pred             cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hh------hcCCcccccCEEEEEcCCcccccCChHHHHhH
Q 023354          174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      .+++++|+.....+....   ++..++++|++....+   ..      +.......+..++.||.|+....... +....
T Consensus        52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~-~~~~~  130 (161)
T cd01863          52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTR-EEGLK  130 (161)
T ss_pred             EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCH-HHHHH
Confidence            344455544333333333   3578999997764211   11      11111133458999999987332222 33333


Q ss_pred             HHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          242 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       242 ~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      ....  ...+++++|+++|.|++++++++...
T Consensus       131 ~~~~--~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         131 FARK--HNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             HHHH--cCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            2222  36789999999999999999988653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04136 Rap_like Rap-like subfamily

Probab=98.90  E-value=1e-08  Score=83.67  Aligned_cols=80  Identities=16%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             cCCcEEEEeCCCCCC---chh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDK---IPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....   +..      +.......+-.++.||.|+........+.... +.+ ..+.+++++||++|.|
T Consensus        73 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~-~~~~~~~~~Sa~~~~~  150 (163)
T cd04136          73 GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQA-LAR-QWGCPFYETSAKSKIN  150 (163)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHH-HHH-HcCCeEEEecCCCCCC
Confidence            357888889765321   111      00011123447899999976432212222222 222 2347899999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          263 VEEIVNHILQA  273 (283)
Q Consensus       263 i~~l~~~l~~~  273 (283)
                      +.++++++.+.
T Consensus       151 v~~l~~~l~~~  161 (163)
T cd04136         151 VDEVFADLVRQ  161 (163)
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04110 Rab35 Rab35 subfamily

Probab=98.90  E-value=1.5e-08  Score=86.46  Aligned_cols=81  Identities=22%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             CCcEEEEeCCCCCCch---hhcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          193 DYIIYIIDVSGGDKIP---RKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~---~~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      +..++++|++....+.   ....    ..-...-.|+.||.|+........+....... . .+.+++++|+++|.|+++
T Consensus        80 ~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~e~Sa~~~~gi~~  157 (199)
T cd04110          80 HGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAG-Q-MGISLFETSAKENINVEE  157 (199)
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHH-H-cCCEEEEEECCCCcCHHH
Confidence            4689999987643211   1110    00123447899999986542222222222222 2 347899999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          266 IVNHILQAWE  275 (283)
Q Consensus       266 l~~~l~~~~~  275 (283)
                      ++++|...+-
T Consensus       158 lf~~l~~~~~  167 (199)
T cd04110         158 MFNCITELVL  167 (199)
T ss_pred             HHHHHHHHHH
Confidence            9999987653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.90  E-value=1.6e-08  Score=86.82  Aligned_cols=101  Identities=11%  Similarity=0.115  Sum_probs=57.2

Q ss_pred             CcccCCchHHHHHHHH-H--HhcCCcEEEEeCCCC-CCch--hhc--CCcccc-cCEEEEEcCCcccccCChHHHHhHHH
Q 023354          173 LLLCESGGDNLAANFS-R--ELADYIIYIIDVSGG-DKIP--RKG--GPGITQ-ADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       173 ~~i~eSgGq~q~~~ia-~--al~~~~l~llDpt~g-~~l~--~~~--~~~i~~-ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      ..++++.|+....... +  .-+|..++++|++.+ ....  ...  ...... .-.|++||.|++..  ...+...+.+
T Consensus        85 i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~--~~~~~~~~~i  162 (203)
T cd01888          85 VSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE--EQALENYEQI  162 (203)
T ss_pred             EEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH--HHHHHHHHHH
Confidence            3455666754332222 2  224788999998753 1111  000  000112 23679999998643  1112112222


Q ss_pred             Hhhc-----CCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          244 LRMR-----DGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       244 ~~~~-----~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .+..     ...+++++|+++|.|+++++++|....+
T Consensus       163 ~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         163 KKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             HHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            2222     3568999999999999999999976543

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK14974 cell division protein FtsY; Provisional

Probab=98.90  E-value=1.1e-08  Score=94.13  Aligned_cols=170  Identities=21%  Similarity=0.322  Sum_probs=99.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-H---HHhccccCCchHHHHHhCCCCCCChHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-F---LMRNGALPEERIRAVETGGCPHAAIRED  154 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~---~~~ig~v~q~~~~~i~~~g~~~~~~~~~  154 (283)
                      ++.+++++|+||+||||++..|+..+... .++.+...|.......+ +   ...+|+-      ++  ........   
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~------v~--~~~~g~dp---  207 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVK------VI--KHKYGADP---  207 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCc------ee--cccCCCCH---
Confidence            46799999999999999999999988766 57888777754322211 1   1122210      00  00000000   


Q ss_pred             HHHHHHHHHHccccccCCCcccCCchHHH-----HHHHH---HHh-cCCcEEEEeCCCCCCchhhcC--CcccccCEEEE
Q 023354          155 ISINLGPLEELSNLFKADLLLCESGGDNL-----AANFS---REL-ADYIIYIIDVSGGDKIPRKGG--PGITQADLLVI  223 (283)
Q Consensus       155 ~~~~~~~l~~l~~~~~~d~~i~eSgGq~q-----~~~ia---~al-~~~~l~llDpt~g~~l~~~~~--~~i~~ad~ivi  223 (283)
                      ...+...++.. ....+|.+++++.|..+     ...+.   +.+ -+..++++|++.|.+......  ...--.+.+|+
T Consensus       208 ~~v~~~ai~~~-~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIl  286 (336)
T PRK14974        208 AAVAYDAIEHA-KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVIL  286 (336)
T ss_pred             HHHHHHHHHHH-HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEE
Confidence            11122233332 23467888888777532     12221   111 146789999888865433211  11123589999


Q ss_pred             EcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       224 ~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      +|.|.-...|....++..      .+.|+.+++  +|+++++|..+
T Consensus       287 TKlD~~~~~G~~ls~~~~------~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        287 TKVDADAKGGAALSIAYV------IGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             eeecCCCCccHHHHHHHH------HCcCEEEEe--CCCChhhcccC
Confidence            999997776766555443      367998887  79999877654

>cd01865 Rab3 Rab3 subfamily

Probab=98.90  E-value=2.9e-08  Score=81.75  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             ccCCchHHHHHHHHHHhc---CCcEEEEeCCCCC---Cchhhc---CC-c-ccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354          175 LCESGGDNLAANFSRELA---DYIIYIIDVSGGD---KIPRKG---GP-G-ITQADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       175 i~eSgGq~q~~~ia~al~---~~~l~llDpt~g~---~l~~~~---~~-~-i~~ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      +++++|+.+...+.....   +..++++|.+...   .+....   .. . -...-.++.||.|+....-...+...+ +
T Consensus        54 l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~  132 (165)
T cd01865          54 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQ-L  132 (165)
T ss_pred             EEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHH-H
Confidence            444556544444433333   4788888976532   111110   00 0 022358999999986542112222222 2


Q ss_pred             HhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ... .+.+++++|++++.|+++++++|....
T Consensus       133 ~~~-~~~~~~~~Sa~~~~gv~~l~~~l~~~~  162 (165)
T cd01865         133 ADQ-LGFEFFEASAKENINVKQVFERLVDII  162 (165)
T ss_pred             HHH-cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            222 345799999999999999999997654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.89  E-value=2.6e-08  Score=83.06  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             ccCCchHHHHHHHHHH---hcCCcEEEEeCCCCCCch---h---hc---CCcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354          175 LCESGGDNLAANFSRE---LADYIIYIIDVSGGDKIP---R---KG---GPGITQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       175 i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~~l~---~---~~---~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                      +++++|+.+...+...   -++..++++|.+....+.   .   ..   ......+..+++||.|.........+.....
T Consensus        53 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~  132 (180)
T cd04137          53 IVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKEL  132 (180)
T ss_pred             EEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHH
Confidence            4445555433223222   235788899987643211   0   00   0111345699999999864311122222222


Q ss_pred             HHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       243 ~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                       .. ....+++.+|++++.|+.+++.++...+...
T Consensus       133 -~~-~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  165 (180)
T cd04137         133 -AE-SWGAAFLESSARENENVEEAFELLIEEIEKV  165 (180)
T ss_pred             -HH-HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence             22 2346889999999999999999998876544

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00154 Rab Rab family

Probab=98.89  E-value=2.3e-08  Score=80.37  Aligned_cols=95  Identities=19%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354          175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      +++++|+.....+....   ++..++++|++....+   .....     ......-.|++||.|.........+.+....
T Consensus        53 l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  132 (159)
T cd00154          53 IWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFA  132 (159)
T ss_pred             EEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHH
Confidence            44455554433333333   3578999998763211   11100     0012344789999999722222333333333


Q ss_pred             HhhcCCCCeEEEEeccCCCHHHHHHHHH
Q 023354          244 LRMRDGGPFIFAQVKHGLGVEEIVNHIL  271 (283)
Q Consensus       244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~  271 (283)
                      ..  ...+++.+|++++.|+++++++|.
T Consensus       133 ~~--~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         133 KE--NGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             HH--cCCeEEEEecCCCCCHHHHHHHHh
Confidence            32  467899999999999999999875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.89  E-value=7.9e-09  Score=96.04  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=79.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccC-CchHHHHHhCCCCCCChHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP-EERIRAVETGGCPHAAIREDISIN  158 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~-q~~~~~i~~~g~~~~~~~~~~~~~  158 (283)
                      .+..|+|+|.+|||||||+|+|++..     . +....++++.+.. .+.+ .++ ..+..+++++|..........   
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~-----~-~v~~~~~tT~d~~-~~~i-~~~~~~~i~l~DT~G~~~~l~~~li---  256 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGAD-----V-YAADQLFATLDPT-TRRL-DLPDGGEVLLTDTVGFIRDLPHELV---  256 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc-----e-eeccCCccccCCE-EEEE-EeCCCceEEEEecCcccccCCHHHH---
Confidence            35899999999999999999999841     1 1112122211110 0111 111 112234556664211001000   


Q ss_pred             HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchh-----hcCCc---ccccCEEEEEcCCccc
Q 023354          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR-----KGGPG---ITQADLLVINKTDLAS  230 (283)
Q Consensus       159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~-----~~~~~---i~~ad~ivi~K~g~i~  230 (283)
                          +.+                +.... ...-+|.+++|+|.+.......     .....   ....-.+|+||+|+..
T Consensus       257 ----e~f----------------~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~  315 (351)
T TIGR03156       257 ----AAF----------------RATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD  315 (351)
T ss_pred             ----HHH----------------HHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence                001                00000 1123578899999876432111     00000   1234589999999864


Q ss_pred             ccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          231 AIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       231 ~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      .    .+. . ....  ...+++++||++|.|+++++++|...
T Consensus       316 ~----~~v-~-~~~~--~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       316 E----PRI-E-RLEE--GYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             h----HhH-H-HHHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            2    111 1 1111  12468999999999999999998653

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.89  E-value=1.5e-08  Score=97.23  Aligned_cols=163  Identities=21%  Similarity=0.212  Sum_probs=90.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C--cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC--hHH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IRE  153 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~--~~~  153 (283)
                      .+|.+++|+|||||||||++..|++.+... |  +|.++..|.......+-.+.          +-..-+.+...  ...
T Consensus       254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~----------~AeilGVpv~~~~~~~  323 (484)
T PRK06995        254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRI----------YGKILGVPVHAVKDAA  323 (484)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHH----------HHHHhCCCeeccCCch
Confidence            358899999999999999999999987543 4  57777766532221111110          11111222211  111


Q ss_pred             HHHHHHHHHHHccccccCCCcccCCchHHHHHH---HHH-HhcC-----CcEEEEeCCCCC-Cchh---hcCCcccccCE
Q 023354          154 DISINLGPLEELSNLFKADLLLCESGGDNLAAN---FSR-ELAD-----YIIYIIDVSGGD-KIPR---KGGPGITQADL  220 (283)
Q Consensus       154 ~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~---ia~-al~~-----~~l~llDpt~g~-~l~~---~~~~~i~~ad~  220 (283)
                      +.   ...+..   ....+.+++++.|..++..   ... .+.+     ..++++|++.+. ++.+   .+..  ...+.
T Consensus       324 Dl---~~aL~~---L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~--~~~~g  395 (484)
T PRK06995        324 DL---RLALSE---LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG--PGLAG  395 (484)
T ss_pred             hH---HHHHHh---ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc--CCCCE
Confidence            11   112222   2244677777777544431   111 1222     268889977653 2221   1211  22468


Q ss_pred             EEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH-HHHH
Q 023354          221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV  267 (283)
Q Consensus       221 ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi-~~l~  267 (283)
                      +|++|.|.....|....+...      ...|+.+++  +|+++ ++|.
T Consensus       396 ~IlTKlDet~~~G~~l~i~~~------~~lPI~yvt--~GQ~VPeDL~  435 (484)
T PRK06995        396 CILTKLDEAASLGGALDVVIR------YKLPLHYVS--NGQRVPEDLH  435 (484)
T ss_pred             EEEeCCCCcccchHHHHHHHH------HCCCeEEEe--cCCCChhhhc
Confidence            999999987776665554433      367888876  68887 5443

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.89  E-value=2.6e-08  Score=81.86  Aligned_cols=81  Identities=25%  Similarity=0.216  Sum_probs=50.2

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|+++|+++...   +.....     ..-...-.++.||.|+........+.......  ..+.+++++|+++|.|+
T Consensus        75 ~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v  152 (166)
T cd01869          75 AHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD--ELGIPFLETSAKNATNV  152 (166)
T ss_pred             CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHH--HcCCeEEEEECCCCcCH
Confidence            368899999876421   111100     00123458899999976543222232222222  24568999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      +++++++....
T Consensus       153 ~~~~~~i~~~~  163 (166)
T cd01869         153 EQAFMTMAREI  163 (166)
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.89  E-value=1.6e-08  Score=82.84  Aligned_cols=82  Identities=20%  Similarity=0.200  Sum_probs=49.6

Q ss_pred             cCCcEEEEeCCCCCC---chhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDK---IPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....   +....      ......+-.++.||.|+........+...... + ....+++++|++++.|
T Consensus        72 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~-~-~~~~~~~~~Sa~~~~~  149 (164)
T smart00173       72 GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELA-R-QWGCPFLETSAKERVN  149 (164)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHH-H-HcCCEEEEeecCCCCC
Confidence            357789999776321   11100      00112344789999998654222222222222 2 2347899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWE  275 (283)
Q Consensus       263 i~~l~~~l~~~~~  275 (283)
                      +++++++|.+...
T Consensus       150 i~~l~~~l~~~~~  162 (164)
T smart00173      150 VDEAFYDLVREIR  162 (164)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999976543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01868 Rab11_like Rab11-like

Probab=98.88  E-value=2.9e-08  Score=81.44  Aligned_cols=97  Identities=20%  Similarity=0.211  Sum_probs=55.4

Q ss_pred             ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---CchhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354          175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      ++++.|+...-.+....   ++..|++.|.+...   .+.....     ..-..+-.++.||.|+........+......
T Consensus        56 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~  135 (165)
T cd01868          56 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA  135 (165)
T ss_pred             EEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH
Confidence            34455554433333322   24678888976532   1111100     0002345788999998654322333333332


Q ss_pred             HhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      ..  ...+++++|+++|.|++++++++...
T Consensus       136 ~~--~~~~~~~~Sa~~~~~v~~l~~~l~~~  163 (165)
T cd01868         136 EK--NGLSFIETSALDGTNVEEAFKQLLTE  163 (165)
T ss_pred             HH--cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            22  35679999999999999999998754

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK04213 GTP-binding protein; Provisional

Probab=98.88  E-value=2.9e-08  Score=84.55  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             ccCEEEEEcCCcccccCChHHHHhHHHHhhcC--------CCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          217 QADLLVINKTDLASAIGADLAVMERDALRMRD--------GGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~--------~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ..-.+|+||.|+....   .+.+.+ +.+...        ..+++.+||++| |+++++++|...+.+
T Consensus       131 ~p~iiv~NK~Dl~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        131 IPPIVAVNKMDKIKNR---DEVLDE-IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             CCeEEEEECccccCcH---HHHHHH-HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            4459999999986442   122221 212111        136899999999 999999999887643

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.88  E-value=2e-08  Score=81.93  Aligned_cols=82  Identities=21%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             cCCcEEEEeCCCCCC---chhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....   +......     .-..+-.+++||.|.........+...+... . .+.+++++|++++.|+
T Consensus        73 ~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~-~-~~~~~~e~Sa~~~~~i  150 (164)
T smart00175       73 AVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAE-E-HGLPFFETSAKTNTNV  150 (164)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHH-H-cCCeEEEEeCCCCCCH
Confidence            368899999876421   1111000     0134568999999976533223333333332 2 3567999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      +++++++.+...
T Consensus       151 ~~l~~~i~~~~~  162 (164)
T smart00175      151 EEAFEELAREIL  162 (164)
T ss_pred             HHHHHHHHHHHh
Confidence            999999987653

Rab GTPases are implicated in vesicle trafficking.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.87  E-value=2.2e-08  Score=89.69  Aligned_cols=204  Identities=18%  Similarity=0.183  Sum_probs=108.2

Q ss_pred             CCCccceeeecCCCCcccCCCCCCCccccccCCCC--CCCCCCCCccc----ccccCC-CcEEEEEcCCCCcHHHHHHHH
Q 023354           29 HGDSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG--YFSRRAPPILS----RNFNER-AFTVGIGGPVGTGKTALMLAL  101 (283)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~-g~~v~ilG~nGsGKSTLl~~L  101 (283)
                      .....+..+-+++.+....+.|.-|-..-.+.+..  .|.-.++.++.    ..+.-+ -.-++|+|.++|||||||++|
T Consensus       137 ~~~~~v~el~~~~~~~i~arGG~GG~gn~~fls~~~r~p~~~~~G~~G~e~~~~lELKsiadvGLVG~PNAGKSTLL~al  216 (366)
T KOG1489|consen  137 EQGKLVAELTKEGDRVIAARGGEGGKGNKFFLSNENRSPKFSKPGLNGEERVIELELKSIADVGLVGFPNAGKSTLLNAL  216 (366)
T ss_pred             ccchhHHHhccCCcEEEEeecCCCCccceeeccccccCcccccCCCCCceEEEEEEeeeecccceecCCCCcHHHHHHHh
Confidence            44556666667777777777777664333333311  11111122222    222222 456899999999999999999


Q ss_pred             HhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHH---HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCC
Q 023354          102 CKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIR---AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCES  178 (283)
Q Consensus       102 ~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~---~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eS  178 (283)
                      +..-+.-+...+.+     ..     -.+|.|.-+...   +-+++|.....-               .          .
T Consensus       217 s~AKpkVa~YaFTT-----L~-----P~iG~v~yddf~q~tVADiPGiI~GAh---------------~----------n  261 (366)
T KOG1489|consen  217 SRAKPKVAHYAFTT-----LR-----PHIGTVNYDDFSQITVADIPGIIEGAH---------------M----------N  261 (366)
T ss_pred             hccCCcccccceee-----ec-----cccceeeccccceeEeccCcccccccc---------------c----------c
Confidence            98533114333322     22     234544322211   112222211100               0          1


Q ss_pred             chHHHHHHHHHH--hcCCcEEEEeCCCCCCchh---------h---cC-CcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354          179 GGDNLAANFSRE--LADYIIYIIDVSGGDKIPR---------K---GG-PGITQADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       179 gGq~q~~~ia~a--l~~~~l~llDpt~g~~l~~---------~---~~-~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      -|.  =..+.|-  -+...++|+|.+....+..         +   +. .....+..||+||.|...++    +.+.+.+
T Consensus       262 kGl--G~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~l~~L  335 (366)
T KOG1489|consen  262 KGL--GYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNLLSSL  335 (366)
T ss_pred             Ccc--cHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHHHHHH
Confidence            111  1112222  2346789999766632111         0   11 11245668999999986432    2222344


Q ss_pred             HhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      .+......|+.+||++++|++++++.|...
T Consensus       336 ~~~lq~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  336 AKRLQNPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             HHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence            444555569999999999999999988653

>cd04123 Rab21 Rab21 subfamily

Probab=98.87  E-value=3.2e-08  Score=80.36  Aligned_cols=80  Identities=24%  Similarity=0.242  Sum_probs=49.9

Q ss_pred             cCCcEEEEeCCCCCCch---h---hc--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---R---KG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~---~~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|.+....+.   .   +.  ......+-.+++||.|+.....-..+...+...  ..+.+++++|++++.|+
T Consensus        73 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~gi  150 (162)
T cd04123          73 ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAK--SVGAKHFETSAKTGKGI  150 (162)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHH--HcCCEEEEEeCCCCCCH
Confidence            35789999987653211   1   00  001134568899999987442222233332222  23567899999999999


Q ss_pred             HHHHHHHHHH
Q 023354          264 EEIVNHILQA  273 (283)
Q Consensus       264 ~~l~~~l~~~  273 (283)
                      +++++++...
T Consensus       151 ~~~~~~l~~~  160 (162)
T cd04123         151 EELFLSLAKR  160 (162)
T ss_pred             HHHHHHHHHH
Confidence            9999998754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01861 Rab6 Rab6 subfamily

Probab=98.87  E-value=1.4e-08  Score=82.77  Aligned_cols=79  Identities=24%  Similarity=0.226  Sum_probs=48.6

Q ss_pred             CCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..++++|.+....+   ....     ...-..+-.+++||.|.........+.......  ..+.+++.+|++++.|++
T Consensus        74 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~  151 (161)
T cd01861          74 SVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK--ELNAMFIETSAKAGHNVK  151 (161)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHH--HhCCEEEEEeCCCCCCHH
Confidence            578888998654211   1100     000124568999999986432223232222222  235789999999999999


Q ss_pred             HHHHHHHHH
Q 023354          265 EIVNHILQA  273 (283)
Q Consensus       265 ~l~~~l~~~  273 (283)
                      ++++++.+.
T Consensus       152 ~l~~~i~~~  160 (161)
T cd01861         152 ELFRKIASA  160 (161)
T ss_pred             HHHHHHHHh
Confidence            999998753

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.87  E-value=1.7e-08  Score=101.05  Aligned_cols=166  Identities=23%  Similarity=0.253  Sum_probs=94.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccC-CC--cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-KY--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS  156 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~  156 (283)
                      +|.+++|+||||+||||++..|++.+.. .|  +|.++..|....         |.+.|-. .+-...+.+..... +..
T Consensus       184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Ri---------gA~eQL~-~~a~~~gvpv~~~~-~~~  252 (767)
T PRK14723        184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRI---------GALEQLR-IYGRILGVPVHAVK-DAA  252 (767)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccch---------HHHHHHH-HHHHhCCCCccccC-CHH
Confidence            4889999999999999999999998853 34  688887775432         2211110 01112222221111 111


Q ss_pred             HHHHHHHHccccccCCCcccCCchHHH----HHHHHHHhc-----CCcEEEEeCCCCC-Cch---hhcCCcc-cccCEEE
Q 023354          157 INLGPLEELSNLFKADLLLCESGGDNL----AANFSRELA-----DYIIYIIDVSGGD-KIP---RKGGPGI-TQADLLV  222 (283)
Q Consensus       157 ~~~~~l~~l~~~~~~d~~i~eSgGq~q----~~~ia~al~-----~~~l~llDpt~g~-~l~---~~~~~~i-~~ad~iv  222 (283)
                      ...+.+..+   ..+|.+++++.|..+    .......+.     ...++|+|+++.. ++.   ..+.... .-.+.+|
T Consensus       253 ~l~~al~~~---~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glI  329 (767)
T PRK14723        253 DLRFALAAL---GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCI  329 (767)
T ss_pred             HHHHHHHHh---cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEE
Confidence            233445444   255888888777322    111111222     2578999988752 222   2222111 1247899


Q ss_pred             EEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH-HHHH
Q 023354          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV-EEIV  267 (283)
Q Consensus       223 i~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi-~~l~  267 (283)
                      +.|-|.....|....+...      .+.|+.+++  +|+++ ++|.
T Consensus       330 lTKLDEt~~~G~iL~i~~~------~~lPI~yit--~GQ~VPdDL~  367 (767)
T PRK14723        330 ITKLDEATHLGPALDTVIR------HRLPVHYVS--TGQKVPEHLE  367 (767)
T ss_pred             EeccCCCCCccHHHHHHHH------HCCCeEEEe--cCCCChhhcc
Confidence            9999988777766554433      367888877  68887 4443

>cd00880 Era_like Era (E

Probab=98.87  E-value=6.9e-09  Score=82.99  Aligned_cols=80  Identities=24%  Similarity=0.281  Sum_probs=52.9

Q ss_pred             cCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHH---hHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          192 ADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVM---ERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~---~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      ++..++++|+.........    .......+..+++||.|++...  .....   ...........+++.+|++++.|++
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~  153 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE--EEEELLELRLLILLLLLGLPVIAVSALTGEGID  153 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh--hHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence            4678889998776433221    1112345568999999988652  22221   1223344467889999999999999


Q ss_pred             HHHHHHHHH
Q 023354          265 EIVNHILQA  273 (283)
Q Consensus       265 ~l~~~l~~~  273 (283)
                      ++++++...
T Consensus       154 ~l~~~l~~~  162 (163)
T cd00880         154 ELREALIEA  162 (163)
T ss_pred             HHHHHHHhh
Confidence            999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01864 Rab19 Rab19 subfamily

Probab=98.87  E-value=3.8e-08  Score=80.92  Aligned_cols=98  Identities=15%  Similarity=0.081  Sum_probs=56.5

Q ss_pred             cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCC---chhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354          174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDK---IPRKG-----GPGITQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~---l~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                      .+++++|+.+...+....   ++..++++|+++...   +....     .......-.+|+||.|+........+.... 
T Consensus        55 ~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-  133 (165)
T cd01864          55 QIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACT-  133 (165)
T ss_pred             EEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHH-
Confidence            344566654443333333   368899999877421   11110     001123357899999986542212222222 


Q ss_pred             HHhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       243 ~~~~~~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      +.+.....+++++|+++|.|++++++++.+
T Consensus       134 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~  163 (165)
T cd01864         134 LAEKNGMLAVLETSAKESQNVEEAFLLMAT  163 (165)
T ss_pred             HHHHcCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            223333346899999999999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.86  E-value=2.2e-08  Score=81.27  Aligned_cols=79  Identities=22%  Similarity=0.180  Sum_probs=46.9

Q ss_pred             cCCcEEEEeCCCCCC---chhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDK---IPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....   +...      ....-..+-.|+.||.|+...... .+.......  ..+.+++++|+++|.|
T Consensus        73 ~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~--~~~~~~~~~Sa~~~~g  149 (162)
T cd04138          73 GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVS-SRQGQDLAK--SYGIPYIETSAKTRQG  149 (162)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceec-HHHHHHHHH--HhCCeEEEecCCCCCC
Confidence            357788888765321   1110      000112344889999998653211 122222211  2356899999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          263 VEEIVNHILQA  273 (283)
Q Consensus       263 i~~l~~~l~~~  273 (283)
                      ++++++++.+.
T Consensus       150 i~~l~~~l~~~  160 (162)
T cd04138         150 VEEAFYTLVRE  160 (162)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01866 Rab2 Rab2 subfamily

Probab=98.86  E-value=4.3e-08  Score=81.05  Aligned_cols=81  Identities=20%  Similarity=0.126  Sum_probs=50.0

Q ss_pred             cCCcEEEEeCCCCC---CchhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGD---KIPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++...   ++.....     ..-...-.++.||.|+........+........  .+.+++++|++++.|+
T Consensus        77 ~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i  154 (168)
T cd01866          77 AAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKE--HGLIFMETSAKTASNV  154 (168)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence            35789999987532   1111110     001234489999999874432233333332222  3568899999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      ++++.++....
T Consensus       155 ~~~~~~~~~~~  165 (168)
T cd01866         155 EEAFINTAKEI  165 (168)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.86  E-value=4.1e-08  Score=81.03  Aligned_cols=81  Identities=21%  Similarity=0.116  Sum_probs=50.8

Q ss_pred             cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|+++|.+....+.   ....     ..-...-.|+.||.|+........+........  ...+++++|++++.|+
T Consensus        76 ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v  153 (167)
T cd01867          76 AMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADE--YGIKFLETSAKANINV  153 (167)
T ss_pred             CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence            35789999987643211   1100     001234589999999875432233333332222  3457899999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      +++++++...+
T Consensus       154 ~~~~~~i~~~~  164 (167)
T cd01867         154 EEAFFTLAKDI  164 (167)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.85  E-value=5.7e-09  Score=99.01  Aligned_cols=124  Identities=19%  Similarity=0.167  Sum_probs=73.1

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhC---
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETG---  144 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~---  144 (283)
                      ......+|..+ |--+.|+||||||||+|++.|.|+.+-. |... .-      +    ..++-|+||.|.--..+-   
T Consensus       496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~-~P------~----~~~mFYIPQRPYms~gtlRDQ  564 (728)
T KOG0064|consen  496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS-IP------R----PNNIFYIPQRPYMSGGTLRDQ  564 (728)
T ss_pred             eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee-cC------C----CcceEeccCCCccCcCcccce
Confidence            35567777754 9999999999999999999999987643 3322 11      1    134888888874110000   


Q ss_pred             -CCCCCC--------hHHHHHHHHH--HHHHccccc-cCCCc----ccCCchHHHHHHHHHHhcC-CcEEEEe-CCCC
Q 023354          145 -GCPHAA--------IREDISINLG--PLEELSNLF-KADLL----LCESGGDNLAANFSRELAD-YIIYIID-VSGG  204 (283)
Q Consensus       145 -g~~~~~--------~~~~~~~~~~--~l~~l~~~~-~~d~~----i~eSgGq~q~~~ia~al~~-~~l~llD-pt~g  204 (283)
                       -+|...        ...++..++.  .|+.+.... +.|.+    -.-|||++||+.+||.+-+ |...|+| .|+.
T Consensus       565 IIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsA  642 (728)
T KOG0064|consen  565 IIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSA  642 (728)
T ss_pred             eecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcc
Confidence             011110        0122222222  122222222 23222    1129999999999999987 8888888 5554

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.85  E-value=4.7e-09  Score=97.18  Aligned_cols=122  Identities=20%  Similarity=0.203  Sum_probs=78.0

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhc--------ccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKF--------LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR  139 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~--------~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~  139 (283)
                      ..++++|+..+ |++++|+|++||||||||++|+|.        |+|+ |.|.+-.+.+....+.++--.++    . ..
T Consensus       397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~----~-~t  471 (593)
T COG2401         397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG----E-VT  471 (593)
T ss_pred             eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC----c-hh
Confidence            46788999866 999999999999999999999995        3455 77766555433222211111111    0 00


Q ss_pred             HHH-hCCCCCCChHHHHHHHHHHHHHccccc--cCCCcccC-CchHHHHHHHHHHhcC-CcEEEEeC
Q 023354          140 AVE-TGGCPHAAIREDISINLGPLEELSNLF--KADLLLCE-SGGDNLAANFSRELAD-YIIYIIDV  201 (283)
Q Consensus       140 ~i~-~~g~~~~~~~~~~~~~~~~l~~l~~~~--~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llDp  201 (283)
                      +++ +..     ...+...+.+.|...++.+  .+-..+.| |.||+.|+.||..++. +.++++|-
T Consensus       472 ilehl~s-----~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE  533 (593)
T COG2401         472 ILEHLRS-----KTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE  533 (593)
T ss_pred             HHHHHhh-----ccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence            111 100     0112233455666655544  55666777 9999999999999996 78888883

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.85  E-value=3.3e-08  Score=80.72  Aligned_cols=80  Identities=16%  Similarity=0.134  Sum_probs=48.9

Q ss_pred             cCCcEEEEeCCCCCCc---hhhcC------CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~~------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   .....      .....+-.|++||.|+........+...+... . .+.+++++|+++|.|
T Consensus        74 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~~  151 (164)
T cd04145          74 GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR-K-LKIPYIETSAKDRLN  151 (164)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH-H-cCCcEEEeeCCCCCC
Confidence            3678899998764211   11100      00123458899999986542222222222222 2 346899999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          263 VEEIVNHILQA  273 (283)
Q Consensus       263 i~~l~~~l~~~  273 (283)
                      ++++++++...
T Consensus       152 i~~l~~~l~~~  162 (164)
T cd04145         152 VDKAFHDLVRV  162 (164)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04175 Rap1 Rap1 subgroup

Probab=98.85  E-value=3.1e-08  Score=81.29  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             cCCcEEEEeCCCCCC---chhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDK---IPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....   +...      ....-..+-.++.||.|+........+...... +. ...+++++||+++.|
T Consensus        73 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~-~~~~~~~~Sa~~~~~  150 (164)
T cd04175          73 GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLA-RQ-WGCAFLETSAKAKIN  150 (164)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHH-HH-hCCEEEEeeCCCCCC
Confidence            467888889765321   1110      001113455899999998654322222222222 22 346899999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAW  274 (283)
Q Consensus       263 i~~l~~~l~~~~  274 (283)
                      +++++.++.+..
T Consensus       151 v~~~~~~l~~~l  162 (164)
T cd04175         151 VNEIFYDLVRQI  162 (164)
T ss_pred             HHHHHHHHHHHh
Confidence            999999997643

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.84  E-value=2.6e-08  Score=84.24  Aligned_cols=166  Identities=16%  Similarity=0.161  Sum_probs=90.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHH-HH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS-IN  158 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~-~~  158 (283)
                      ...-|+++|++++|||||||+|++.-.    ++-.+..++.+.     .-.-|...+...+++++|+-+........ ..
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~----LArtSktPGrTq-----~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w   93 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKN----LARTSKTPGRTQ-----LINFFEVDDELRLVDLPGYGYAKVPKEVKEKW   93 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcc----eeecCCCCCccc-----eeEEEEecCcEEEEeCCCcccccCCHHHHHHH
Confidence            466799999999999999999999421    111222222110     00111111223467888887765433222 22


Q ss_pred             HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCC
Q 023354          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~  234 (283)
                      ...+.++.               ..|..     +...++|+|...+......    .......+-.|+++|.|++.....
T Consensus        94 ~~~i~~YL---------------~~R~~-----L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~  153 (200)
T COG0218          94 KKLIEEYL---------------EKRAN-----LKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER  153 (200)
T ss_pred             HHHHHHHH---------------hhchh-----heEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence            22232221               11111     2357889996655322111    111224556999999999976222


Q ss_pred             hHHHHhH---HHHhhcCCCC-eEEEEeccCCCHHHHHHHHHHHHH
Q 023354          235 DLAVMER---DALRMRDGGP-FIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       235 ~~e~~~~---~~~~~~~~~~-i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      . ..+..   .+....++.+ ++..|+.++.|++++...|...+.
T Consensus       154 ~-k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         154 N-KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             H-HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            1 11111   2222222222 788899999999999999887764

>cd04114 Rab30 Rab30 subfamily

Probab=98.84  E-value=3e-08  Score=81.61  Aligned_cols=80  Identities=18%  Similarity=0.146  Sum_probs=48.2

Q ss_pred             cCCcEEEEeCCCCCCc---hhhc---C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKI---PRKG---G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~---~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....+   ....   .  ..-...-.+++||.|+.....-. ........+. ...+++.+|+++|.|+
T Consensus        80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~-~~~~~~~~~~-~~~~~~~~Sa~~~~gv  157 (169)
T cd04114          80 ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVS-QQRAEEFSDA-QDMYYLETSAKESDNV  157 (169)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC-HHHHHHHHHH-cCCeEEEeeCCCCCCH
Confidence            3578888997754211   1110   0  01123348999999976432212 2222222232 2367899999999999


Q ss_pred             HHHHHHHHHH
Q 023354          264 EEIVNHILQA  273 (283)
Q Consensus       264 ~~l~~~l~~~  273 (283)
                      +++++++...
T Consensus       158 ~~l~~~i~~~  167 (169)
T cd04114         158 EKLFLDLACR  167 (169)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.84  E-value=3.5e-08  Score=80.54  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             CcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhhc---C-CcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354          173 LLLCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRKG---G-PGITQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       173 ~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~~---~-~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                      ..+++++|+.....+....   ++..+++.|.+...   .+....   . ..-...-.+++||.|+.....-..+.....
T Consensus        53 ~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~  132 (162)
T cd04106          53 LMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEAL  132 (162)
T ss_pred             EEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHH
Confidence            3344555554333333222   35778888876542   111110   0 001334589999999876433223333322


Q ss_pred             HHhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       243 ~~~~~~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      ...  .+.+++++|++++.|+++++++|..
T Consensus       133 ~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         133 AKR--LQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             HHH--cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            222  3468999999999999999999864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.84  E-value=1.3e-08  Score=83.11  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHH-hhc---CCCCeEEEEec
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDAL-RMR---DGGPFIFAQVK  258 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~~---~~~~i~~isa~  258 (283)
                      ++..|+++|.+....+..   ..    .  .....+-.+++||.|+.... .. +.+...+. ...   ...+++++||+
T Consensus        68 ~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~-~~i~~~~~~~~~~~~~~~~~~~~Sa~  145 (160)
T cd04156          68 TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-TA-EEITRRFKLKKYCSDRDWYVQPCSAV  145 (160)
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-CH-HHHHHHcCCcccCCCCcEEEEecccc
Confidence            357899999876432111   00    0  00134568999999985331 22 22222211 111   23468889999


Q ss_pred             cCCCHHHHHHHHHH
Q 023354          259 HGLGVEEIVNHILQ  272 (283)
Q Consensus       259 ~g~gi~~l~~~l~~  272 (283)
                      +|.|+++++++|.+
T Consensus       146 ~~~gv~~~~~~i~~  159 (160)
T cd04156         146 TGEGLAEAFRKLAS  159 (160)
T ss_pred             cCCChHHHHHHHhc
Confidence            99999999998854

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04140 ARHI_like ARHI subfamily

Probab=98.83  E-value=2.6e-08  Score=82.04  Aligned_cols=80  Identities=16%  Similarity=0.100  Sum_probs=47.9

Q ss_pred             cCCcEEEEeCCCCCCc---hhh-------cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDKI---PRK-------GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~-------~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      ++..|+++|.++...+   ...       ... .-..+-.+|.||.|+.....-..+.....  ...+..+++++||++|
T Consensus        73 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--~~~~~~~~~e~SA~~g  150 (165)
T cd04140          73 GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAAC--ATEWNCAFMETSAKTN  150 (165)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHH--HHHhCCcEEEeecCCC
Confidence            4678889997764321   110       000 01345589999999864211111111111  1224567899999999


Q ss_pred             CCHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQA  273 (283)
Q Consensus       261 ~gi~~l~~~l~~~  273 (283)
                      .|+++++++|...
T Consensus       151 ~~v~~~f~~l~~~  163 (165)
T cd04140         151 HNVQELFQELLNL  163 (165)
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.83  E-value=3.9e-08  Score=80.53  Aligned_cols=99  Identities=22%  Similarity=0.282  Sum_probs=57.1

Q ss_pred             cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc---C-CcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354          174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG---G-PGITQADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~---~-~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      .+++++|+...-.+.+..   ++..+++.|.+....+   ....   . ......-.+|+||.|+.............  
T Consensus        55 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~--  132 (164)
T cd04101          55 FIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQA--  132 (164)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHH--
Confidence            344556655433333322   3578999998764211   1110   0 00124558899999986542212222111  


Q ss_pred             HhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      .....+.+++.+|++++.|+++++++|...+
T Consensus       133 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         133 FAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             HHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            2223456789999999999999999987653

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.83  E-value=2.7e-08  Score=83.76  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=56.4

Q ss_pred             ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCchh---------hcCCcccccCEEEEEcCCcccccCChHHHHhHH
Q 023354          175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPR---------KGGPGITQADLLVINKTDLASAIGADLAVMERD  242 (283)
Q Consensus       175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~~---------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~  242 (283)
                      +++++|+.+.-.+....   ++..++++|++....+..         ........+-.|++||.|+...  ...+.+...
T Consensus        56 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~  133 (183)
T cd04152          56 FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKL  133 (183)
T ss_pred             EEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHH
Confidence            44566654333333332   357899999876422111         0001123456899999997533  122222221


Q ss_pred             HH--hhc--CCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          243 AL--RMR--DGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       243 ~~--~~~--~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      +.  ...  ...+++++||++++|+++++++|.....
T Consensus       134 ~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         134 LALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             hCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence            11  111  1246789999999999999999987653

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04109 Rab28 Rab28 subfamily

Probab=98.83  E-value=2.3e-08  Score=86.48  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhh------cCC--cccccCEEEEEcCCcccccCChHHHHh
Q 023354          175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRK------GGP--GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~------~~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +++++|+...-.+....   ++.+|+++|.++..   .+...      ...  .....-.+|.||.|+........+...
T Consensus        54 i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~  133 (215)
T cd04109          54 VWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHA  133 (215)
T ss_pred             EEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHH
Confidence            44455554433333222   46889999987642   11110      000  001123678999998643222222222


Q ss_pred             HHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          241 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       241 ~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      . +.+. .+.+.+++||++|.|++++++++...+.
T Consensus       134 ~-~~~~-~~~~~~~iSAktg~gv~~lf~~l~~~l~  166 (215)
T cd04109         134 R-FAQA-NGMESCLVSAKTGDRVNLLFQQLAAELL  166 (215)
T ss_pred             H-HHHH-cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            2 2222 3567899999999999999999987653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01862 Rab7 Rab7 subfamily

Probab=98.83  E-value=4.4e-08  Score=80.63  Aligned_cols=84  Identities=15%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             cCCcEEEEeCCCCCCch---h---hcCCc------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIP---R---KGGPG------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~---~~~~~------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~  259 (283)
                      ++..|+++|+.....+.   .   .....      -...-.+++||.|+........+.... +.+.....+++.+|+++
T Consensus        73 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~  151 (172)
T cd01862          73 ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQ-WCQSNGNIPYFETSAKE  151 (172)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHH-HHHHcCCceEEEEECCC
Confidence            35789999976543211   0   00000      023447888999997432223333333 33334446899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWEA  276 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~~  276 (283)
                      |.|++++++++.....+
T Consensus       152 ~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         152 AINVEQAFETIARKALE  168 (172)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999876543

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.82  E-value=1.8e-08  Score=96.65  Aligned_cols=156  Identities=26%  Similarity=0.278  Sum_probs=83.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL  159 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~  159 (283)
                      ++..++|+|++|||||||+|.|++.-.     .+....++++.+.. ...+. +...+..+++++|.....  .      
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~gtT~d~~-~~~i~-~~g~~i~l~DT~G~~~~~--~------  278 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIAGTTRDVI-EEHIN-LDGIPLRLIDTAGIRETD--D------  278 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCcccccE-EEEEE-ECCeEEEEEeCCCCCCCc--c------
Confidence            578999999999999999999998421     11111122211100 00000 011112344555542110  0      


Q ss_pred             HHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhh--cCCcccccCEEEEEcCCcccccCChHH
Q 023354          160 GPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       160 ~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~--~~~~i~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                       .++.+              |. ++..-...-+|.+++|+|++........  ........-.+|+||.|+....  ...
T Consensus       279 -~ie~~--------------gi-~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~--~~~  340 (449)
T PRK05291        279 -EVEKI--------------GI-ERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEI--DLE  340 (449)
T ss_pred             -HHHHH--------------HH-HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccc--hhh
Confidence             00000              00 1111112335788999998765321110  0001133558999999986431  111


Q ss_pred             HHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          238 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       238 ~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                              .....+++.+|+++|.|+++++++|......
T Consensus       341 --------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        341 --------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             --------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence                    2234578999999999999999999887653

>cd04125 RabA_like RabA-like subfamily

Probab=98.82  E-value=5.2e-08  Score=82.14  Aligned_cols=83  Identities=18%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             cCCcEEEEeCCCCCCch---hh---cC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---RK---GG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~---~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....+.   ..   ..  ..-...-.++.||.|+........+......  ...+.+++.+|++++.|+
T Consensus        73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~--~~~~~~~~evSa~~~~~i  150 (188)
T cd04125          73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFC--DSLNIPFFETSAKQSINV  150 (188)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHH--HHcCCeEEEEeCCCCCCH
Confidence            36889999987643211   10   00  0001234789999997643211222222221  223558999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|......
T Consensus       151 ~~~f~~l~~~~~~  163 (188)
T cd04125         151 EEAFILLVKLIIK  163 (188)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.81  E-value=5.6e-08  Score=82.99  Aligned_cols=82  Identities=21%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             CCcEEEEeCCCCCC---ch-------hhcC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          193 DYIIYIIDVSGGDK---IP-------RKGG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~-------~~~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      +..|+++|.+....   +.       ....  .....+-.||.||.|+........+...+... .....+++++|+++|
T Consensus        75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~e~Sak~~  153 (201)
T cd04107          75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCK-ENGFIGWFETSAKEG  153 (201)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHH-HcCCceEEEEeCCCC
Confidence            57889999776321   11       1000  01123458999999986322223333333322 233357899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~  275 (283)
                      .|+++++++|.....
T Consensus       154 ~~v~e~f~~l~~~l~  168 (201)
T cd04107         154 INIEEAMRFLVKNIL  168 (201)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999987653

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=98.81  E-value=7.8e-08  Score=81.44  Aligned_cols=101  Identities=17%  Similarity=0.197  Sum_probs=58.3

Q ss_pred             ccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHH
Q 023354          175 LCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       175 i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      ++++.|+.....+....   ++..|+++|.+....+   ....     ...-..+-.++.||.|+........+.... +
T Consensus        54 i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l  132 (191)
T cd04112          54 IWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGER-L  132 (191)
T ss_pred             EEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHH-H
Confidence            44555544333333332   3578999998764221   1100     000123457889999986432222222222 2


Q ss_pred             HhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          244 LRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       244 ~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      .. ..+.+++++|+++|.|+++++++|.+.....
T Consensus       133 ~~-~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         133 AK-EYGVPFMETSAKTGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             HH-HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            22 2456899999999999999999998776543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.81  E-value=2.4e-08  Score=84.15  Aligned_cols=79  Identities=18%  Similarity=0.113  Sum_probs=47.7

Q ss_pred             cCCcEEEEeCCCCCCchh---h----cC--CcccccCEEEEEcCCcccccCChHHHHhHHHHh-h---------cCCCCe
Q 023354          192 ADYIIYIIDVSGGDKIPR---K----GG--PGITQADLLVINKTDLASAIGADLAVMERDALR-M---------RDGGPF  252 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~----~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~---------~~~~~i  252 (283)
                      ++..++++|.+....+..   .    ..  .....+-.|++||.|+...  -..+.+.+.+.- .         .....+
T Consensus        85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCceeEE
Confidence            357899999876421111   0    00  0013456899999997533  223333333210 0         123358


Q ss_pred             EEEEeccCCCHHHHHHHHHH
Q 023354          253 IFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       253 ~~isa~~g~gi~~l~~~l~~  272 (283)
                      +.+|+++++|++++++||..
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             EEeecccCCChHHHHHHHHh
Confidence            99999999999999999965

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.81  E-value=1.2e-08  Score=84.15  Aligned_cols=55  Identities=24%  Similarity=0.350  Sum_probs=37.7

Q ss_pred             cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       216 ~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      ..+..+++||.|+.....  ...............+++.+|++++.|++++++++..
T Consensus       120 ~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         120 AKPVIYVLNKIDLDDAEE--LEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             hCCeEEEEEchhcCchhH--HHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence            456789999999875421  1111111223335678999999999999999998854

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.81  E-value=1.2e-08  Score=86.41  Aligned_cols=83  Identities=20%  Similarity=0.268  Sum_probs=52.9

Q ss_pred             hcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhH---HHHhhcC-----CCCeEEEEec
Q 023354          191 LADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMER---DALRMRD-----GGPFIFAQVK  258 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~---~~~~~~~-----~~~i~~isa~  258 (283)
                      .+|..|+++|+..|...+...    .......-.|++||.|++..  ...+..++   .+.+...     ..|++++|++
T Consensus        93 ~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~  170 (188)
T PF00009_consen   93 QADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEK--ELEEIIEEIKEKLLKEYGENGEEIVPVIPISAL  170 (188)
T ss_dssp             TSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHH--HHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTT
T ss_pred             ccccceeeeecccccccccccccccccccccceEEeeeeccchhh--hHHHHHHHHHHHhccccccCccccceEEEEecC
Confidence            457899999998875432211    01123345899999999833  22222221   2222221     3579999999


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 023354          259 HGLGVEEIVNHILQAWE  275 (283)
Q Consensus       259 ~g~gi~~l~~~l~~~~~  275 (283)
                      +|.|+++|+++|...+|
T Consensus       171 ~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  171 TGDGIDELLEALVELLP  187 (188)
T ss_dssp             TTBTHHHHHHHHHHHS-
T ss_pred             CCCCHHHHHHHHHHhCc
Confidence            99999999999988765

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04127 Rab27A Rab27a subfamily

Probab=98.80  E-value=3.7e-08  Score=82.03  Aligned_cols=100  Identities=19%  Similarity=0.190  Sum_probs=59.4

Q ss_pred             CcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354          173 LLLCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       173 ~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ..++++.||.+...+....   ++..+++.|++...   ++....      ...-...-.+|.||.|+........+...
T Consensus        65 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~  144 (180)
T cd04127          65 LQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAK  144 (180)
T ss_pred             EEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHH
Confidence            3455666766544444433   35789999987642   111110      00012234789999998754222223332


Q ss_pred             HHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          241 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       241 ~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      .....  .+.+++++|+++|.|+++++++|....
T Consensus       145 ~~~~~--~~~~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         145 ALADK--YGIPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             HHHHH--cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            22222  356899999999999999999997643

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	283
2hf9_A	226	Crystal Structure Of Hypb From Methanocaldococcus J		3e-16
2hf8_A	226	Crystal Structure Of Hypb From Methanocaldococcus J		3e-15
2wsm_A	221	Crystal Structure Of Hydrogenase Maturation Factor		1e-11

>pdb|2HF9|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus Jannaschii In The Triphosphate Form Length = 226

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 13/185 (7%)
Query: 88  GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
           G +G+GKT L+  L   L+DKY +A +  D+  K D E + ++GA    ++  + TG   
Sbjct: 45  GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK 206
           H     D  +    LE+L NL + DLL  E+ G+ +  A+F       I+ I    G D 
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDT 155
Query: 207 IPRKGGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265
           I +   PGI + ADL+VINK DLA A+GAD+  ME DA R+      +   +K   G ++
Sbjct: 156 IEKH--PGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDK 213
Query: 266 IVNHI 270
           ++  I
Sbjct: 214 VLEFI 218

>pdb|2HF8|A Chain A, Crystal Structure Of Hypb From Methanocaldococcus Jannaschii In The Triphosphate Form, In Complex With Zinc Length = 226

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 88  GPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP 147
           G +G+GKT L+  L   L+DKY +A +  D+  K D E   ++GA    ++  + TG   
Sbjct: 45  GAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERXEKHGA----KVVPLNTGKEC 100
Query: 148 HAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA-ANFSRELADYIIYIIDVSGGDK 206
           H     D  +    LE+L NL + DLL  E+ G+ +  A+F       I+ I    G D 
Sbjct: 101 HL----DAHLVGHALEDL-NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDT 155
Query: 207 IPRKGGPGITQ-ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE 265
           I +   PGI + ADL+VINK DLA A+GAD+   E DA R+      +   +K   G ++
Sbjct: 156 IEKH--PGIXKTADLIVINKIDLADAVGADIKKXENDAKRINPDAEVVLLSLKTXEGFDK 213
Query: 266 IVNHI 270
           ++  I
Sbjct: 214 VLEFI 218

>pdb|2WSM|A Chain A, Crystal Structure Of Hydrogenase Maturation Factor Hypb From Archaeoglobus Fulgidus Length = 221

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET 143
           V I G +G+GKT L+    + + ++  + A+  D+ +K D E + R G   E    A+ T
Sbjct: 33  VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAE----AIST 88
Query: 144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD-YIIYIIDVS 202
           G   H     D  +    L++ S+    DLLL E+ G NL      +L + Y + ++ V+
Sbjct: 89  GKECHL----DAHMIYHRLKKFSD---CDLLLIENVG-NLICPVDFDLGENYRVVMVSVT 140
Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG 262
            GD +  K       ADL+VINK  LA A+GAD+  M+ DA  +      I   +K G G
Sbjct: 141 EGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKG 200
Query: 263 VEEIVNHI 270
            EE ++ +
Sbjct: 201 FEEWIDFL 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
2hf9_A	226	Probable hydrogenase nickel incorporation protein	2e-92
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	2e-90
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	6e-09
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	2e-08
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	9e-07
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	3e-04
1pq4_A	291	Periplasmic binding protein component of AN ABC T	3e-04

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Length = 226

 Score =  271 bits (696), Expect = 2e-92
 Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 20/217 (9%)

Query: 71  PILSRN----------FNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF 119
            IL  N           N+         G +G+GKT L+  L   L+DKY +A +  D+ 
Sbjct: 17  DILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76

Query: 120 TKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESG 179
            K D E + ++GA    ++  + TG   H     D  +    LE+L NL + DLL  E+ 
Sbjct: 77  AKFDAERMEKHGA----KVVPLNTGKECHL----DAHLVGHALEDL-NLDEIDLLFIENV 127

Query: 180 GDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVM 239
           G+ +            I +I  + GD    K    +  ADL+VINK DLA A+GAD+  M
Sbjct: 128 GNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKM 187

Query: 240 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA 276
           E DA R+      +   +K   G ++++  I ++ + 
Sbjct: 188 ENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Length = 221

 Score =  266 bits (683), Expect = 2e-90
 Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 12/206 (5%)

Query: 75  RNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGAL 133
               E     V I G +G+GKT L+    + + ++  + A+  D+ +K D E + R G  
Sbjct: 23  EALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGI- 81

Query: 134 PEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD 193
              +  A+ TG   H     D  +    L++ S+    DLLL E+ G+ +         +
Sbjct: 82  ---KAEAISTGKECHL----DAHMIYHRLKKFSDC---DLLLIENVGNLICPVDFDLGEN 131

Query: 194 YIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFI 253
           Y + ++ V+ GD +  K       ADL+VINK  LA A+GAD+  M+ DA  +      I
Sbjct: 132 YRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKII 191

Query: 254 FAQVKHGLGVEEIVNHILQAWEASTG 279
              +K G G EE ++ +       + 
Sbjct: 192 EMDLKTGKGFEEWIDFLRGILNVHSD 217

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 28/225 (12%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
            AF VG+ GP G GK+  +    K L ++ + L+ +  D  +   G      G+L  ++ 
Sbjct: 73  LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSG------GSLLGDKT 126

Query: 139 RAVETGGCPHAAIRED--------ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRE 190
           R  E     +A IR          ++        L      D++L E+ G   +     +
Sbjct: 127 RMTELSRDMNAYIRPSPTRGTLGGVTRTTNEAILLCEGAGYDIILIETVGVGQSEFAVAD 186

Query: 191 LADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLASAIGADLAVME-RDALRM-- 246
           + D  + ++  +GGD++   K G  I  ADL+ + K+D    + A     E   AL++  
Sbjct: 187 MVDMFVLLLPPAGGDELQGIKRGI-IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLR 245

Query: 247 -RDGG---PFIFAQVKHGLGVEEIVNHIL--QAWEASTG--KKRR 283
            R        I    + G G+ E+ + +   Q    ++G    +R
Sbjct: 246 KRSQVWKPKVIRISARSGEGISEMWDKMKDFQDLMLASGELTAKR 290

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 50/225 (22%), Positives = 87/225 (38%), Gaps = 28/225 (12%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI 138
            A  VGI G  G GK+  + AL   L ++ + +A +  D  +   G      G++  ++ 
Sbjct: 78  NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTG------GSILGDKT 131

Query: 139 RAVETGGCPHAAIRE--------DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRE 190
           R       P+A IR          ++        L      D++L E+ G   +      
Sbjct: 132 RMARLAVHPNAYIRPSPTSGTLGGVTRATRETVVLLEAAGFDVILIETVGVGQSEVAVAN 191

Query: 191 LADYIIYIIDVSGGDKIPR-KGGPGITQADLLVINKTDLASAIGADLAVME-RDALRM-- 246
           + D  + +     GD++   K G  +  AD++V+NK D      A LA  E   A+R+  
Sbjct: 192 MVDTFVLLTLARTGDQLQGIKKGV-LELADIVVVNKADGEHHKEARLAARELSAAIRLIY 250

Query: 247 -RDGG---PFIFAQVKHGLGVEEIVNHIL--QAWEASTG--KKRR 283
            R+     P +      G G+ E+ + +   +      G    RR
Sbjct: 251 PREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDARR 295

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 34/228 (14%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND---IFTKEDGEFLMRNGALPE 135
               +G+ G  G GK+  + A    L  +   +A +  D     T          G++  
Sbjct: 55  NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTG---------GSILG 105

Query: 136 ERIRAVETGGCPHAAIR--------EDISINLGPLEELSNLFKADLLLCESGGDNLAANF 187
           ++ R  +      A IR           S     L  L      D+++ E+ G   +   
Sbjct: 106 DKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE 165

Query: 188 SRELADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLASAIGADLAVME-RDALR 245
              + D  I +    GGD +   K G  +  ADL+VINK D  +     +A      AL 
Sbjct: 166 VARMVDCFISLQIAGGGDDLQGIKKGL-MEVADLIVINKDDGDNHTNVAIARHMYESALH 224

Query: 246 M---RDGG---PFIFAQVKHGLGVEEIVNHIL--QAWEASTG--KKRR 283
           +   +        +        G++EI + I+  +    ++G  ++ R
Sbjct: 225 ILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVR 272

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 54/233 (23%), Positives = 89/233 (38%), Gaps = 42/233 (18%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND---IFTKEDGEFLMRNGALPE 135
           RA  VGI G  G GK+  + AL   L    + +A +  D     T          G++  
Sbjct: 54  RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG---------GSILG 104

Query: 136 ERIRAVETGGCPHAAIREDISI----NLGPL----EELSNLFKA---DLLLCESGGDNLA 184
           ++ R        +A IR          LG +     E   L +A   D++L E+ G   +
Sbjct: 105 DKTRMARLAIDRNAFIR---PSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS 161

Query: 185 ANFSRELADYIIYIIDVSGGDKI-PRKGGPGITQADLLVINKTDLASAIGA--DLAVMER 241
                +L D+ + ++    GD++   K G     AD++ +NK D           A   R
Sbjct: 162 ETAVADLTDFFLVLMLPGAGDELQGIKKGI-FELADMIAVNKADDGDGERRASAAASEYR 220

Query: 242 DALRMRDGG------PFIFAQVKHGLGVEEIVNHIL--QAWEASTG---KKRR 283
            AL +          P +     HG G++ + + I   ++   +TG    KRR
Sbjct: 221 AALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRR 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 44/303 (14%), Positives = 82/303 (27%), Gaps = 73/303 (24%)

Query: 17  HDNDHDHTHEKNHGDSTATSWVGSDGRVYHS-HDGLAPHSHEPIYSPGYFSRRAPPILS- 74
              ++         +    S      R+Y    D L  ++   +++  Y   R  P L  
Sbjct: 87  LRINYKFLMSPIKTEQRQPS---MMTRMYIEQRDRL--YNDNQVFAK-YNVSRLQPYLKL 140

Query: 75  RN--FNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIF------TKEDGE 125
           R      R A  V I G +G+GKT + L +C           +   IF            
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 126 FLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL-EELSNLFKA-----DLL-LCES 178
            L     L    +  ++      +    +I + +  +  EL  L K+      LL L   
Sbjct: 198 VLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--- 250

Query: 179 GGDNL-------AANF-------SRELADYIIYIIDVSGGDKIPR----KGGPGITQADL 220
              N+       A N        +R        + D                  +T  ++
Sbjct: 251 --LNVQNAKAWNAFNLSCKILLTTRFKQ-----VTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 221 LVINKTDLASAIGADLAVMERDALR--MRDGGPFIFAQVKHGLGVEEIVNHILQAWEAST 278
             +    L   +           L   +    P   + +     + + +      W+   
Sbjct: 304 KSL----LLKYLD-----CRPQDLPREVLTTNPRRLSII--AESIRDGLATW-DNWKHVN 351

Query: 279 GKK 281
             K
Sbjct: 352 CDK 354

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 16/91 (17%)

Query: 190 ELADYIIYIIDVSGGD-----KIPRKGGPGITQAD--LLVINKTDLASAIGADLAVMERD 242
           E AD +++++D +  D     +I  +    +       +V NK D+           E  
Sbjct: 82  EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG---------ETL 132

Query: 243 ALRMRDGGPFIFAQVKHGLGVEEIVNHILQA 273
            +   +G   I    + G GV+ + NH+ Q+
Sbjct: 133 GMSEVNGHALIRLSARTGEGVDVLRNHLKQS 163

>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 12/51 (23%)

Query: 4   HDHHTHDHAHHHHHDNDHDHTHEKNHGDSTATSWVGSDGRVYHSHDGLAPH 54
              H  +  H  H  + HDH  E     +              +     PH
Sbjct: 95  DHSHGEEEGHDDHSHDGHDHGSESEKEKA------------KGALMVADPH 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.95
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.95
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.95
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.95
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.94
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.94
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.94
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.94
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.94
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.94
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.94
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.94
1g6h_A	257	High-affinity branched-chain amino acid transport	99.94
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.94
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.93
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.93
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.93
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.93
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.93
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.93
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.93
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.93
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.93
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.93
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.92
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.92
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.92
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.92
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.92
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.92
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.92
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.91
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.91
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.91
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.9
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.9
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.9
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.89
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.89
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.89
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.89
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.88
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.85
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.78
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.76
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.75
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.74
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.74
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.73
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.73
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.73
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.71
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.69
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.68
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.62
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.61
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.61
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.59
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.58
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.57
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.55
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.55
2og2_A	359	Putative signal recognition particle receptor; nuc	99.54
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.54
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.51
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.51
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.5
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.5
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.48
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.45
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.43
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.4
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.4
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.38
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.36
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.36
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.35
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.34
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.34
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.28
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.27
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.23
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.23
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.22
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.18
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.16
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.16
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.14
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.11
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.1
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.07
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.02
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.01
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.01
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.01
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.0
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.99
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.99
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.99
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.99
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.98
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.98
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.98
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.96
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.96
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.95
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.95
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.94
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.94
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.94
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.94
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.93
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.93
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.92
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.92
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.92
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.91
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.91
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.91
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.91
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.91
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.91
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.91
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.9
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.9
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.89
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.89
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.89
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.89
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.88
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.88
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.88
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.87
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.87
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.87
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.87
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.87
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.86
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.86
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.85
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.85
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.85
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.85
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.85
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.84
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.84
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.84
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.84
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.83
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.83
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.83
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.83
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.83
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.82
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.82
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.82
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.31
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.81
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.81
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.81
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.81
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.8
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.8
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.8
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.8
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.8
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.79
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.79
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.78
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.78
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.77
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.77
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.77
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.77
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.77
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.76
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.75
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.75
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.75
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.75
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.75
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.75
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.75
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.74
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.74
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.74
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.74
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.74
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.73
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.72
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.71
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.71
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.71
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.71
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.71
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.7
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.7
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.69
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.69
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.69
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.69
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.69
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.69
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.68
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.68
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.67
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.67
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.67
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.67
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.66
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.66
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.66
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.65
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.65
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.64
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.63
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.62
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.62
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.6
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.6
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.6
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.6
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.58
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.55
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.54
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.54
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.53
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.53
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.53
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.52
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.52
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.51
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.51
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.51
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.49
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.49
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.48
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.48
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	98.48
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.48
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.47
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.47
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.47
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.46
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.46
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.46
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.45
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.44
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.44
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.43
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.43
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.41
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.4
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.4
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.39
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.39
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.38
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.38
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.36
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.36
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.36
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.36
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.34
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.34
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.34
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.34
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.34
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.34
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.33
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.33
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.32
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.31
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.31
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.31
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.31
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.28
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.27
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.26
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.24
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.24
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.24
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.23
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.22
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.22
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.21
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.21
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.21
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.2
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.16
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.16
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.16
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.14
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.14
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.14
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.13
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.11
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.11
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.11
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.1
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.08
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.08
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.06
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.06
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.06
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.05
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.05
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.03
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.02
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.01
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.01
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.0
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.99
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	97.98
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.98
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.97
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.96
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.94
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.92
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.92
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.91
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.89
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.88
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.88
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.87
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.87
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.84
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.81
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.79
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.78
2xxa_A	433	Signal recognition particle protein; protein trans	97.75
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.75
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	97.71
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	97.69
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.68
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.67
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.66
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.65
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.65
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.64
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.6
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.59
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.56
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.56
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.55
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.51
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.5
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.49
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.49
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.48
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.46
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.44
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.41
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.39
3ice_A	422	Transcription termination factor RHO; transcriptio	97.39
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.37
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.36
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.34
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.31
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.26
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.23
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.21
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.19
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.19
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.17
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.17
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.15
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.13
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.12
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.1
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.09
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.08
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.07
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.06
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.05
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.04
1via_A	175	Shikimate kinase; structural genomics, transferase	97.03
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.02
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.02
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.02
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.01
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.0
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.99
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.97
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.96
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.96
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.96
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.95
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.95
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.93
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.93
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.92
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.92
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	96.91
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.85
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.85
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.84
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.82
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.82
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.8
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.79
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.78
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.77
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.76
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.75
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.75
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.75
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.73
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.73
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.73
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.71
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.69
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.66
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.66
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.65
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	96.65
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.65
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.65
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.64
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.63
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.63
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.62
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.6
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.58
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.58
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.56
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.54
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.53
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.52
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.51
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.51
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.49
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.49
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.48
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.47
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.46
3bos_A	242	Putative DNA replication factor; P-loop containing	96.46
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.41
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.41
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.39
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.38
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.37
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.36
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.36
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.33
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.33
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.28
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.28
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.28
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.27
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.24
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.18
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.15
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.12
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.12
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.1
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.09
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.07
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.02
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.0
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.98
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.96
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.95
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.95
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.94
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.91
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.9
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.9
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.89
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.88
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	95.87
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.85

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.95  E-value=4.4e-29  Score=230.13  Aligned_cols=188  Identities=15%  Similarity=0.066  Sum_probs=143.8

Q ss_pred             CccccccCCCCCCCCC--CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---
Q 023354           53 PHSHEPIYSPGYFSRR--APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---  125 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---  125 (283)
                      +.+...+++..|....  ..++++++|..+ |++++|+||||||||||+|+|+|+++|+ |+|.+.+.++...+..+   
T Consensus        23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~  102 (366)
T 3tui_C           23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK  102 (366)
T ss_dssp             CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred             ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            4566777777775432  357899999854 9999999999999999999999999998 99999999998776544   


Q ss_pred             HHHhccccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CC
Q 023354          126 FLMRNGALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       126 ~~~~ig~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      +++.+||+||++.        +.+.++.... ....+....+.+.|+.+++....+..+.+ ||||+||++|||+|+ +|
T Consensus       103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P  182 (366)
T 3tui_C          103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  182 (366)
T ss_dssp             HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCC
T ss_pred             HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            3568999999863        2222221111 11223334567788888888888888888 999999999999999 48


Q ss_pred             cEEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .|+|+| ||+++|..             ++.+.++           .+||+|++++.|++++.|++.+++.
T Consensus       183 ~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~  253 (366)
T 3tui_C          183 KVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  253 (366)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            888888 99997632             2223221           6799999999999999998887764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.95  E-value=3.5e-28  Score=216.07  Aligned_cols=198  Identities=15%  Similarity=0.118  Sum_probs=150.2

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .....++++.|.  ...++++++|.. +|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++......++++.++
T Consensus        11 ~l~~~~l~~~~~--~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~   88 (266)
T 4g1u_C           11 LLEASHLHYHVQ--QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA   88 (266)
T ss_dssp             EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred             eEEEEeEEEEeC--CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence            344455555553  345789999985 59999999999999999999999999998 99999999998877778888899


Q ss_pred             ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-------CCc
Q 023354          132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-------DYI  195 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-------~~~  195 (283)
                      |++|++.        +.+.++.... ...+....+.+.++.+++....+..+.+ ||||+||++|||+|+       +|.
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~  167 (266)
T 4g1u_C           89 VMRQYSELAFPFSVSEVIQMGRAPY-GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR  167 (266)
T ss_dssp             EECSCCCCCSCCBHHHHHHGGGTTS-CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred             EEecCCccCCCCCHHHHHHhhhhhc-CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            9999752        3333332222 1112233456678888877777877777 999999999999998       789


Q ss_pred             EEEEe-CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC
Q 023354          196 IYIID-VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGG  250 (283)
Q Consensus       196 l~llD-pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~  250 (283)
                      ++|+| ||++.|..             ++.+.++           .+||+|++++.|++++.|++.+++........+..
T Consensus       168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~l~~~~~~  247 (266)
T 4g1u_C          168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQA  247 (266)
T ss_dssp             EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCHHHHHHHCCS
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCcHHHHHHhCC
Confidence            99998 99997632             1112121           58999999999999999999888877666666666


Q ss_pred             CeEE
Q 023354          251 PFIF  254 (283)
Q Consensus       251 ~i~~  254 (283)
                      ++..
T Consensus       248 ~~~~  251 (266)
T 4g1u_C          248 DLGV  251 (266)
T ss_dssp             CEEE
T ss_pred             CcEE
Confidence            5543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.95  E-value=2e-28  Score=218.53  Aligned_cols=186  Identities=16%  Similarity=0.044  Sum_probs=139.0

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCC--CHHHHHHhc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTK--EDGEFLMRN  130 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~--~~~~~~~~i  130 (283)
                      +...++++.|... ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...  ...++++.+
T Consensus         8 l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i   86 (275)
T 3gfo_A            8 LKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI   86 (275)
T ss_dssp             EEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred             EEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence            4455666666432 34889999985 59999999999999999999999999998 9999999988422  234567789


Q ss_pred             cccCCchH---------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354          131 GALPEERI---------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       131 g~v~q~~~---------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l  198 (283)
                      ||+||++.         +.+.++.... ....+....+.+.|+.+++....+..+.+ ||||+||++||++|+ +|.++|
T Consensus        87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLl  166 (275)
T 3gfo_A           87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLI  166 (275)
T ss_dssp             EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999762         1222221111 11223334566788888888888888887 999999999999999 588888


Q ss_pred             Ee-CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          199 ID-VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       199 lD-pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      +| ||++.|..             ++.+.+           ..+||+|++++.|++++.|++.+++..
T Consensus       167 LDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  234 (275)
T 3gfo_A          167 LDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  234 (275)
T ss_dssp             EECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred             EECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence            88 99997531             111222           167999999999999999998887664

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.95  E-value=8.1e-28  Score=217.52  Aligned_cols=186  Identities=15%  Similarity=0.208  Sum_probs=136.1

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|+.. .+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++.
T Consensus        51 ~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~  129 (306)
T 3nh6_A           51 KGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSH  129 (306)
T ss_dssp             SCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHT
T ss_pred             CCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcc
Confidence            4668888999998743 458999999855 9999999999999999999999999998 999999999988888888999


Q ss_pred             ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHH--HHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc-
Q 023354          130 NGALPEERI-------RAVETGGCPHAAIREDISINLGP--LEELS--NLFKADLLLCE-----SGGDNLAANFSRELA-  192 (283)
Q Consensus       130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~--l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~-  192 (283)
                      +|||||++.       +.+.++. .... .+....+.+.  +..+.  ...+++..+.+     ||||+||++|||+|+ 
T Consensus       130 i~~v~Q~~~lf~~Tv~eNi~~~~-~~~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~  207 (306)
T 3nh6_A          130 IGVVPQDTVLFNDTIADNIRYGR-VTAG-NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK  207 (306)
T ss_dssp             EEEECSSCCCCSEEHHHHHHTTS-TTCC-HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCccCcccHHHHHHhhc-ccCC-HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence            999999864       2333332 2222 1112111111  11111  11133444433     999999999999998 


Q ss_pred             CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|.|+|+| ||++.|...+           ...+          +..||+|++++.|++++.|+..+++.
T Consensus       208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~  277 (306)
T 3nh6_A          208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS  277 (306)
T ss_dssp             CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            68888888 9999763211           1111          25699999999999999999887765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.94  E-value=1.9e-27  Score=219.04  Aligned_cols=181  Identities=20%  Similarity=0.162  Sum_probs=135.9

Q ss_pred             ccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC--CCHHHHHHhcccc
Q 023354           58 PIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT--KEDGEFLMRNGAL  133 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~--~~~~~~~~~ig~v  133 (283)
                      .+++..|.  ...++++++|..+ |++++|+||||||||||||+|+|+++|+ |+|.+.+.++..  ......++.+|||
T Consensus         8 ~~ls~~y~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~v   85 (359)
T 3fvq_A            8 GHLSKSFQ--NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYL   85 (359)
T ss_dssp             EEEEEEET--TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEE
T ss_pred             EeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEE
Confidence            34444442  2457899999855 9999999999999999999999999998 999999988732  1112234679999


Q ss_pred             CCchH--------HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-C
Q 023354          134 PEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-V  201 (283)
Q Consensus       134 ~q~~~--------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-p  201 (283)
                      ||++.        +.+.++..... ...+....+.+.|+.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |
T Consensus        86 fQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEP  165 (359)
T 3fvq_A           86 VQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEP  165 (359)
T ss_dssp             CTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             eCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            99853        33444432221 2233334667788888888888888888 999999999999999 58888888 9


Q ss_pred             CCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          202 SGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       202 t~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +++.|..             ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       166 ts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~  228 (359)
T 3fvq_A          166 FSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR  228 (359)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence            9997632             111222           26899999999999999999988765

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.94  E-value=1.9e-27  Score=218.98  Aligned_cols=184  Identities=17%  Similarity=0.101  Sum_probs=137.8

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .+...+.+..|.. ...++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+.  ++.+|
T Consensus        14 ~l~~~~l~~~y~g-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig   90 (355)
T 1z47_A           14 TIEFVGVEKIYPG-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVG   90 (355)
T ss_dssp             EEEEEEEEECCTT-STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSSEE
T ss_pred             eEEEEEEEEEEcC-CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChh--hCcEE
Confidence            4556667777732 245789999985 59999999999999999999999999998 9999999888654432  46799


Q ss_pred             ccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          132 ALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ||||+..        +.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+|
T Consensus        91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  170 (355)
T 1z47_A           91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD  170 (355)
T ss_dssp             EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            9999752        2222221100 11122233566788888888888888887 999999999999998 58888888


Q ss_pred             -CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       |+++.|..             ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       171 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  235 (355)
T 1z47_A          171 EPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE  235 (355)
T ss_dssp             STTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence             99997632             111222           16799999999999999898888765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.94  E-value=1.9e-27  Score=207.65  Aligned_cols=178  Identities=16%  Similarity=0.060  Sum_probs=128.6

Q ss_pred             cCCCCCCCCC--CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhc
Q 023354           59 IYSPGYFSRR--APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRN  130 (283)
Q Consensus        59 ~~~~~~~~~~--~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~i  130 (283)
                      ++++.|....  ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..++    ++.+
T Consensus         6 ~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i   85 (235)
T 3tif_A            6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI   85 (235)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHE
T ss_pred             EEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccE
Confidence            3444454332  24789999985 49999999999999999999999999998 999999999887765443    3469


Q ss_pred             cccCCchH--------HHHHhCCC----CCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          131 GALPEERI--------RAVETGGC----PHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       131 g~v~q~~~--------~~i~~~g~----~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      ||+||++.        +.+.++..    ......+....+.+.++.++.... .+..+.+ ||||+||++|||+++ +|.
T Consensus        86 ~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~  165 (235)
T 3tif_A           86 GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPP  165 (235)
T ss_dssp             EEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            99999863        22222210    011222333456677888776654 3777777 999999999999999 488


Q ss_pred             EEEEe-CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChH
Q 023354          196 IYIID-VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADL  236 (283)
Q Consensus       196 l~llD-pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~  236 (283)
                      ++++| ||++.|..             ++.+.+          ..+||+|++++.|++...++..
T Consensus       166 llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~  230 (235)
T 3tif_A          166 IILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR  230 (235)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence            88888 99997632             111222          2689999999999998765543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.94  E-value=3.9e-27  Score=208.91  Aligned_cols=183  Identities=13%  Similarity=0.066  Sum_probs=134.6

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC--CCCHHHHHHhc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRN  130 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~--~~~~~~~~~~i  130 (283)
                      +...++++.|..  ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.  ......+++.+
T Consensus        25 l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i  102 (263)
T 2olj_A           25 IDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV  102 (263)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred             EEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence            555666666632  35789999985 59999999999999999999999999998 99999998874  22334567789


Q ss_pred             cccCCchH--------HHHHhCC--CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEE
Q 023354          131 GALPEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYI  198 (283)
Q Consensus       131 g~v~q~~~--------~~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~l  198 (283)
                      ||+||++.        +.+.++.  .......+....+.+.++.+++....+..+.+ ||||+||++||++++ +|.+++
T Consensus       103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll  182 (263)
T 2olj_A          103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML  182 (263)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence            99999752        2222211  11111122233556788888887777887777 999999999999999 488888


Q ss_pred             Ee-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          199 ID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       199 lD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +| |+++.|...            +.+.++           .+||++++++.|++.+.|++.+++
T Consensus       183 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  247 (263)
T 2olj_A          183 FDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF  247 (263)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            88 999976321            112221           579999999999999888876654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.94  E-value=2.5e-27  Score=219.64  Aligned_cols=170  Identities=16%  Similarity=0.098  Sum_probs=131.6

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ..++++++|..+ |++++|+||||||||||||+|+|+++|+ |+|.+.+.++...++.  .+.+|||||++.        
T Consensus        16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~   93 (381)
T 3rlf_A           16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVA   93 (381)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHH
T ss_pred             EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHH
Confidence            357899999854 9999999999999999999999999998 9999999998766554  367999999853        


Q ss_pred             HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch------
Q 023354          139 RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------  208 (283)
Q Consensus       139 ~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------  208 (283)
                      +.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.|+|+| |++++|..      
T Consensus        94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~  173 (381)
T 3rlf_A           94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR  173 (381)
T ss_dssp             HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence            2222221111 11122234566788888888888888888 999999999999998 68888888 99997632      


Q ss_pred             -------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 -------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 -------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                             ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~  223 (381)
T 3rlf_A          174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  223 (381)
T ss_dssp             HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence                   121222           26899999999999999999988765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.94  E-value=7.6e-27  Score=208.77  Aligned_cols=195  Identities=13%  Similarity=0.011  Sum_probs=141.0

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC--CCCHHHHHHhc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF--TKEDGEFLMRN  130 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~--~~~~~~~~~~i  130 (283)
                      +...++++.|..  ..++++++|.. +|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++.  .....++++.+
T Consensus        22 l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i   99 (279)
T 2ihy_A           22 IQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI   99 (279)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred             EEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence            555666666643  35789999985 59999999999999999999999999998 99999998876  55556677789


Q ss_pred             cccCCchH----------HHHHhCCCCC-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          131 GALPEERI----------RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       131 g~v~q~~~----------~~i~~~g~~~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      ||++|++.          +.+.++....     ....+....+.+.++.+++....+..+.+ |+||+||++|||+++ +
T Consensus       100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~  179 (279)
T 2ihy_A          100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ  179 (279)
T ss_dssp             EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred             EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence            99999752          1222322110     01122233556778888887777888877 999999999999998 5


Q ss_pred             CcEEEEe-CCCCCCch-------------hhcCCc--c----------cccCEEEEEcCCcccccCChHHHHhHHHHhhc
Q 023354          194 YIIYIID-VSGGDKIP-------------RKGGPG--I----------TQADLLVINKTDLASAIGADLAVMERDALRMR  247 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~-------------~~~~~~--i----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~  247 (283)
                      |.++|+| ||++.|..             ++....  +          .+||++++++.|++.+.|++.+++........
T Consensus       180 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~  259 (279)
T 2ihy_A          180 PQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRF  259 (279)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSHHHHHHH
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhccHHHHHH
Confidence            8888888 99997531             111122  2          57999999999999988887777655434333


Q ss_pred             CCCC
Q 023354          248 DGGP  251 (283)
Q Consensus       248 ~~~~  251 (283)
                      +..+
T Consensus       260 ~~~~  263 (279)
T 2ihy_A          260 FQKN  263 (279)
T ss_dssp             HTSC
T ss_pred             hCCc
Confidence            4433

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=3.9e-27  Score=208.21  Aligned_cols=187  Identities=15%  Similarity=0.057  Sum_probs=134.9

Q ss_pred             CCCCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354           50 GLAPHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~  127 (283)
                      ..-+.+...++++.|.  ...++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.. ....++
T Consensus        11 ~~~~~l~i~~l~~~y~--~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~   87 (256)
T 1vpl_A           11 HHMGAVVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR   87 (256)
T ss_dssp             ---CCEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHH
T ss_pred             ccCCeEEEEEEEEEEC--CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHh
Confidence            3345567777777774  245789999985 59999999999999999999999999998 999999988754 345567


Q ss_pred             HhccccCCchH--------HHHHhCCC-CCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          128 MRNGALPEERI--------RAVETGGC-PHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       128 ~~ig~v~q~~~--------~~i~~~g~-~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      +.+||+||++.        +.+.++.. ......+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.|
T Consensus        88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l  167 (256)
T 1vpl_A           88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL  167 (256)
T ss_dssp             TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred             hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            78999999752        22222110 0011111123455678888777777777777 999999999999999 4888


Q ss_pred             EEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          197 YIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       197 ~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +++| |+++.|...            +.+.++           .+||++++++.|++.+.|++.+++
T Consensus       168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  234 (256)
T 1vpl_A          168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK  234 (256)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred             EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence            8888 999976321            112221           579999999999999877766553

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.94  E-value=6.2e-27  Score=205.01  Aligned_cols=184  Identities=17%  Similarity=0.096  Sum_probs=132.4

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH-Hhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL-MRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~-~~ig  131 (283)
                      +...++++.|..  ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......+++ +.+|
T Consensus         7 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   84 (240)
T 1ji0_A            7 LEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA   84 (240)
T ss_dssp             EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred             EEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence            344455555533  35789999985 59999999999999999999999999998 9999999888765555443 4599


Q ss_pred             ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHcc-ccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEELS-NLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~-~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      |+||++.        +.+.++........+....+.+.++.+. .....+..+.+ |+||+||++||++++ +|.++++|
T Consensus        85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD  164 (240)
T 1ji0_A           85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD  164 (240)
T ss_dssp             EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            9999752        3333432111111122233445667773 66666777777 999999999999999 48888888


Q ss_pred             -CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       |+++.|...            +.+.+           ..+||++++++.|++.+.|++.+++.
T Consensus       165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  228 (240)
T 1ji0_A          165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD  228 (240)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence             999976321            11222           16799999999999988887766654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.94  E-value=1.3e-26  Score=204.99  Aligned_cols=181  Identities=18%  Similarity=0.086  Sum_probs=133.8

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH-HHHHhcc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG-EFLMRNG  131 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~-~~~~~ig  131 (283)
                      +...++++.|..  ..++++++|.. +|++++|+||||||||||+|+|+|+++|+ |+|.+.+.++...... ..++.+|
T Consensus         8 l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   85 (257)
T 1g6h_A            8 LRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV   85 (257)
T ss_dssp             EEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred             EEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence            444555555532  35789999985 59999999999999999999999999998 9999999888655443 3456799


Q ss_pred             ccCCchH--------HHHHhCCCC-C-------------CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHH
Q 023354          132 ALPEERI--------RAVETGGCP-H-------------AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFS  188 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~-~-------------~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia  188 (283)
                      |+||++.        +.+.++... .             ....+....+.+.++.+++....+..+.+ |+||+||++||
T Consensus        86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA  165 (257)
T 1g6h_A           86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  165 (257)
T ss_dssp             ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence            9999853        233333221 1             11122233556788888887777888877 99999999999


Q ss_pred             HHhc-CCcEEEEe-CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHH
Q 023354          189 RELA-DYIIYIID-VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       189 ~al~-~~~l~llD-pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                      ++++ +|.++++| |+++.|...            +.+.+           ..+||++++++.|++.+.|++.+
T Consensus       166 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~  239 (257)
T 1g6h_A          166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE  239 (257)
T ss_dssp             HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred             HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence            9998 58888888 999976321            11222           26899999999999998887766

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.94  E-value=2.9e-26  Score=204.25  Aligned_cols=187  Identities=15%  Similarity=0.137  Sum_probs=134.6

Q ss_pred             CccccccCCCCCCCC-CCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           53 PHSHEPIYSPGYFSR-RAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      +.+...++++.|... ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   94 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ   94 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence            457777888887642 346899999985 59999999999999999999999999998 999999988866556667788


Q ss_pred             ccccCCchH-------HHHHhCCCCCCChHHHHH------HHHHHHHHc--cccccCCCcccC-CchHHHHHHHHHHhc-
Q 023354          130 NGALPEERI-------RAVETGGCPHAAIREDIS------INLGPLEEL--SNLFKADLLLCE-SGGDNLAANFSRELA-  192 (283)
Q Consensus       130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~------~~~~~l~~l--~~~~~~d~~i~e-SgGq~q~~~ia~al~-  192 (283)
                      +||+||++.       +.+.++. ......+...      .+.+.++.+  +.....+..+.+ |+||+||++|||+|+ 
T Consensus        95 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~  173 (271)
T 2ixe_A           95 VAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR  173 (271)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTC-SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEecCCccccccHHHHHhhhc-ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence            999999853       2333332 1111101111      122345554  344445666666 999999999999999 


Q ss_pred             CCcEEEEe-CCCCCCchh-------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 DYIIYIID-VSGGDKIPR-------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~-------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|.|+|+| |+++.|...             +.+.+          +..||+|++++.|++.+.|++.+++.
T Consensus       174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~  245 (271)
T 2ixe_A          174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME  245 (271)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            48888888 999975321             11222          25699999999999998888776654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=1.1e-26  Score=245.25  Aligned_cols=191  Identities=15%  Similarity=0.136  Sum_probs=148.5

Q ss_pred             CCCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH
Q 023354           50 GLAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF  126 (283)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~  126 (283)
                      ...|.+.+.+++|.|+++.. ++|++++|..+ |++|||+||+|||||||+++|+|++.|+ |+|.+++.|+.+.+...+
T Consensus      1072 ~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A         1072 KLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp             CCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHH
T ss_pred             CCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHH
Confidence            34578999999999997754 68999999965 9999999999999999999999999997 999999999999999999


Q ss_pred             HHhccccCCchH------H-HHHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHH
Q 023354          127 LMRNGALPEERI------R-AVETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRE  190 (283)
Q Consensus       127 ~~~ig~v~q~~~------~-~i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~a  190 (283)
                      |+++++|||++.      + .+.+|..+.....+++..+.+  .+.++  .+..++|..++|     ||||+||++||||
T Consensus      1152 R~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A         1152 RSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp             HTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred             HhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence            999999999985      2 233333332222222222211  12222  124578998987     9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh----------c-----------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK----------G-----------GPGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~----------~-----------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.|+++| ||+..|...+          .           ..++..||+|++++.|++++.|++.+++.
T Consensus      1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A         1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp             HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred             HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            98 58888887 9988653211          0           12357899999999999999999988775

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.93  E-value=3.1e-26  Score=211.24  Aligned_cols=169  Identities=15%  Similarity=0.076  Sum_probs=130.6

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------H
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------R  139 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~  139 (283)
                      .++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++...++.  ++.+|||||+..        +
T Consensus        17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e   94 (359)
T 2yyz_A           17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFE   94 (359)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCHHH
T ss_pred             EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHH
Confidence            4788999985 59999999999999999999999999998 9999999888665443  467999999752        3


Q ss_pred             HHHhCCCCCCChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------
Q 023354          140 AVETGGCPHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------  208 (283)
Q Consensus       140 ~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------  208 (283)
                      .+.++........ +....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..       
T Consensus        95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~  174 (359)
T 2yyz_A           95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRA  174 (359)
T ss_dssp             HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence            3334322111111 1223566788888888888888887 999999999999999 58888888 99997632       


Q ss_pred             ------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 ------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 ------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                            ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~  223 (359)
T 2yyz_A          175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD  223 (359)
T ss_dssp             HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence                  111222           16799999999999999999888775

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.93  E-value=4.7e-26  Score=210.94  Aligned_cols=182  Identities=12%  Similarity=-0.004  Sum_probs=135.0

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...+++..|.  ...++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+.  ++.+||
T Consensus        12 l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~   87 (372)
T 1v43_A           12 VKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM   87 (372)
T ss_dssp             EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred             EEEEEEEEEEC--CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence            34445555553  235788999985 59999999999999999999999999998 9999999888655443  467999


Q ss_pred             cCCchH--------HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERI--------RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~--------~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      |||+..        +.+.++..... ...+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| 
T Consensus        88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE  167 (372)
T 1v43_A           88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE  167 (372)
T ss_dssp             EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred             EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            999853        22333322111 1122234567788888888888888888 999999999999998 58888888 


Q ss_pred             CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |+++.|..             ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  231 (372)
T 1v43_A          168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  231 (372)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99997632             121222           26799999999999999999888765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.93  E-value=1.5e-26  Score=205.19  Aligned_cols=183  Identities=12%  Similarity=0.074  Sum_probs=131.9

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC----------CC
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT----------KE  122 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~----------~~  122 (283)
                      +...++++.|.  ...++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..          ..
T Consensus         7 l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   84 (262)
T 1b0u_A            7 LHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   84 (262)
T ss_dssp             EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             EEEeeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence            44455555553  235789999985 59999999999999999999999999998 999999888751          22


Q ss_pred             H---HHHHHhccccCCchH--------HHHHhCC--CCCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHH
Q 023354          123 D---GEFLMRNGALPEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANF  187 (283)
Q Consensus       123 ~---~~~~~~ig~v~q~~~--------~~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~i  187 (283)
                      .   ..+++.+||+||++.        +.+.++.  .......+....+.+.++.+++... .+..+.+ ||||+||++|
T Consensus        85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l  164 (262)
T 1b0u_A           85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  164 (262)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence            2   245678999999752        2222211  1111112222355677888877766 6777777 9999999999


Q ss_pred             HHHhc-CCcEEEEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          188 SRELA-DYIIYIID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       188 a~al~-~~~l~llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      |++++ +|.|+|+| |+++.|...            +.+.++           .+||++++++.|++.+.|++.+++
T Consensus       165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  241 (262)
T 1b0u_A          165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF  241 (262)
T ss_dssp             HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99998 58888888 999976321            112221           579999999999999888776654

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.93  E-value=1.3e-26  Score=203.89  Aligned_cols=180  Identities=14%  Similarity=0.130  Sum_probs=128.4

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +.+.++++.|+.....++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.......+++.+||
T Consensus         8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~   87 (247)
T 2ff7_A            8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   87 (247)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEE
Confidence            5666777777433346789999985 59999999999999999999999999998 999999998877666677788999


Q ss_pred             cCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccccc-----------cCCCcccC-CchHHHHHHHHHHhc-
Q 023354          133 LPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-  192 (283)
Q Consensus       133 v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-----------~~d~~i~e-SgGq~q~~~ia~al~-  192 (283)
                      +||++.       +.+.++ ..... .+   .+.+.++.+....           ..+..+.+ ||||+||++|||+++ 
T Consensus        88 v~Q~~~l~~~tv~enl~~~-~~~~~-~~---~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~  162 (247)
T 2ff7_A           88 VLQDNVLLNRSIIDNISLA-NPGMS-VE---KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN  162 (247)
T ss_dssp             ECSSCCCTTSBHHHHHTTT-CTTCC-HH---HHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred             EeCCCccccccHHHHHhcc-CCCCC-HH---HHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence            999863       222232 11111 11   1223333332221           22233344 999999999999999 


Q ss_pred             CCcEEEEe-CCCCCCchh-----------hcCCc----------ccccCEEEEEcCCcccccCChHHHH
Q 023354          193 DYIIYIID-VSGGDKIPR-----------KGGPG----------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~-----------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +|.++++| |+++.|...           ..+.+          +..||++++++.|++.+.|++.+++
T Consensus       163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~  231 (247)
T 2ff7_A          163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL  231 (247)
T ss_dssp             CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence            48888888 999976321           11111          2569999999999999888776654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.93  E-value=1.3e-26  Score=213.00  Aligned_cols=166  Identities=16%  Similarity=0.096  Sum_probs=126.9

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HH
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~  140 (283)
                      ++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+  .++.+|||||+..        +.
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en   92 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN   92 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence            789999985 59999999999999999999999999998 999999988865443  3578999999752        12


Q ss_pred             HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch---------
Q 023354          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP---------  208 (283)
Q Consensus       141 i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~---------  208 (283)
                      +.++........ . ..+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..         
T Consensus        93 l~~~~~~~~~~~-~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l  170 (348)
T 3d31_A           93 LEFGMRMKKIKD-P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML  170 (348)
T ss_dssp             HHHHHHHHCCCC-H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCH-H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence            222110000000 1 3456678888887778888877 999999999999999 58888888 99997632         


Q ss_pred             ----hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 ----RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 ----~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                          ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       171 ~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~  217 (348)
T 3d31_A          171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (348)
T ss_dssp             HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence                121222           26799999999999999899888765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.93  E-value=9.8e-27  Score=214.79  Aligned_cols=179  Identities=13%  Similarity=0.063  Sum_probs=133.3

Q ss_pred             ccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .+.+..|.  ...++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++....+.  ++.+|||||
T Consensus         7 ~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q   82 (362)
T 2it1_A            7 ENIVKKFG--NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQ   82 (362)
T ss_dssp             EEEEEESS--SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECT
T ss_pred             EeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEec
Confidence            34444452  235789999985 59999999999999999999999999998 9999999888665443  367999999


Q ss_pred             chH--------HHHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          136 ERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       136 ~~~--------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                      +..        +.+.++... .....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |++
T Consensus        83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s  162 (362)
T 2it1_A           83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS  162 (362)
T ss_dssp             TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred             CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence            752        222222100 011122223566788888888778888887 999999999999998 58888888 999


Q ss_pred             CCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          204 GDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       204 g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +.|..             ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~  223 (362)
T 2it1_A          163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY  223 (362)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            87532             111222           26799999999999999999888765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.93  E-value=3e-26  Score=203.57  Aligned_cols=169  Identities=14%  Similarity=0.070  Sum_probs=125.3

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..   ..+++.+||++|++.        
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~~~~~~i~~v~q~~~~~~~~~tv   96 (266)
T 2yz2_A           20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAERV   96 (266)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---HHHGGGEEEECSSGGGGCCCSSH
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---HHhhhhEEEEeccchhhcCCCcH
Confidence            35788999985 59999999999999999999999999998 999998887643   256678999999851        


Q ss_pred             -HHHHhCCCCCCChHHHHHHHHHHHHHcccc--ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---
Q 023354          139 -RAVETGGCPHAAIREDISINLGPLEELSNL--FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---  209 (283)
Q Consensus       139 -~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~--~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---  209 (283)
                       +.+.++........+....+.+.++.+++.  ...+..+.+ |+||+||++||++++ +|.++++| |+++.|...   
T Consensus        97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~  176 (266)
T 2yz2_A           97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD  176 (266)
T ss_dssp             HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHH
Confidence             233333211111111123455678888777  667777777 999999999999999 58888888 999976321   


Q ss_pred             ---------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          210 ---------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       210 ---------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                               +.+.+           ..+||++++++.|++.+.|++.+++.
T Consensus       177 l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  227 (266)
T 2yz2_A          177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE  227 (266)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence                     11222           15799999999999998887766653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.93  E-value=2.4e-26  Score=199.24  Aligned_cols=176  Identities=16%  Similarity=0.068  Sum_probs=126.5

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HH-Hhc
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FL-MRN  130 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~-~~i  130 (283)
                      ..+.++.|..  ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+..+   ++ +.+
T Consensus         7 ~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i   84 (224)
T 2pcj_A            7 AENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKL   84 (224)
T ss_dssp             EEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred             EEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcE
Confidence            3444555532  35788999985 59999999999999999999999999998 99999998886655432   33 679


Q ss_pred             cccCCchH--------HHHHhCCCC-CCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          131 GALPEERI--------RAVETGGCP-HAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       131 g~v~q~~~--------~~i~~~g~~-~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      ||+||++.        +.+.++... .....+....+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++
T Consensus        85 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL  164 (224)
T 2pcj_A           85 GFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFA  164 (224)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99999752        122221100 011112223456778888877777777777 999999999999999 4888888


Q ss_pred             e-CCCCCCchh------------hcCCc----------ccccCEEEEEcCCcccccCC
Q 023354          200 D-VSGGDKIPR------------KGGPG----------ITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       200 D-pt~g~~l~~------------~~~~~----------i~~ad~ivi~K~g~i~~~g~  234 (283)
                      | |+++.|...            +.+.+          +.+||++++++.|++.+.|+
T Consensus       165 DEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          165 DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence            8 999976321            11222          26799999999999887653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.93  E-value=4.7e-26  Score=209.83  Aligned_cols=168  Identities=15%  Similarity=0.063  Sum_probs=129.1

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC-----CCHHHHHHhccccCCchH-----
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT-----KEDGEFLMRNGALPEERI-----  138 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~-----~~~~~~~~~ig~v~q~~~-----  138 (283)
                      ++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++..     ..+  .++.+|||||+..     
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~--~~r~ig~v~Q~~~l~~~l   97 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP--EDRKIGMVFQTWALYPNL   97 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG--GGSCEEEEETTSCCCTTS
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh--hhCCEEEEeCCCccCCCC
Confidence            788999985 49999999999999999999999999998 999998887643     222  3467999999752     


Q ss_pred             ---HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch---
Q 023354          139 ---RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP---  208 (283)
Q Consensus       139 ---~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~---  208 (283)
                         +.+.++..... ...+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..   
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~  177 (353)
T 1oxx_K           98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD  177 (353)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence               33444322111 1122234567788888888888888887 999999999999998 58888888 99997632   


Q ss_pred             ----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 ----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 ----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~  230 (353)
T 1oxx_K          178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (353)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence                      111222           16799999999999999899888765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.93  E-value=1.2e-25  Score=197.83  Aligned_cols=167  Identities=13%  Similarity=0.086  Sum_probs=128.6

Q ss_pred             CCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchH--------HH
Q 023354           70 PPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (283)
Q Consensus        70 ~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~  140 (283)
                      ..+++++|.. +|++++|+||||||||||+++|+|+++|+|+|.+.+.++......++++.+||++|++.        +.
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~   93 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY   93 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence            4788899984 59999999999999999999999999877999999888766666677788999999753        22


Q ss_pred             HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCc-------EEEEe-CCCCCCchh-
Q 023354          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYI-------IYIID-VSGGDKIPR-  209 (283)
Q Consensus       141 i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~-------l~llD-pt~g~~l~~-  209 (283)
                      +.++......    ...+.+.++.+++....+..+.+ |+||+||++||++++ +|.       ++++| |+++.|... 
T Consensus        94 l~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~  169 (249)
T 2qi9_C           94 LTLHQHDKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ  169 (249)
T ss_dssp             HHTTCSSTTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHH
T ss_pred             HHHhhccCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHH
Confidence            3333221111    23455678888877777777777 999999999999998 477       88888 999976321 


Q ss_pred             -----------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          210 -----------KGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       210 -----------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                 +.+.++           .+||++++++.|++.+.|++.+++.
T Consensus       170 ~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  222 (249)
T 2qi9_C          170 SALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT  222 (249)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence                       112221           6799999999999998888777665

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.93  E-value=9.7e-26  Score=197.73  Aligned_cols=179  Identities=14%  Similarity=0.117  Sum_probs=125.2

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ..++++.|. .....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+++.+||+|
T Consensus         4 ~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~   82 (243)
T 1mv5_A            4 ARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS   82 (243)
T ss_dssp             EEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred             EEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence            344555663 2346889999985 59999999999999999999999999998 99999998886554444567899999


Q ss_pred             CchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCC-----------cccC-CchHHHHHHHHHHhc-CC
Q 023354          135 EERI-------RAVETGGCPHAAIREDISINLGPLEELSNLFKADL-----------LLCE-SGGDNLAANFSRELA-DY  194 (283)
Q Consensus       135 q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~-----------~i~e-SgGq~q~~~ia~al~-~~  194 (283)
                      |++.       +.+.++..... ..+   .+.+.++.+......+.           .+.+ |+||+||++|||+++ +|
T Consensus        83 q~~~l~~~tv~enl~~~~~~~~-~~~---~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p  158 (243)
T 1mv5_A           83 QDSAIMAGTIRENLTYGLEGDY-TDE---DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (243)
T ss_dssp             CSSCCCCEEHHHHTTSCTTSCS-CHH---HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCccccccHHHHHhhhccCCC-CHH---HHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence            9863       12222211111 111   23344555444333222           2334 999999999999998 58


Q ss_pred             cEEEEe-CCCCCCchh-----------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          195 IIYIID-VSGGDKIPR-----------KGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       195 ~l~llD-pt~g~~l~~-----------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .++++| |+++.|...           ..+.+          +..||++++++.|++.+.|++.+++.
T Consensus       159 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (243)
T 1mv5_A          159 KILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA  226 (243)
T ss_dssp             SEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            888888 999865321           01222          25699999999999998888877654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.92  E-value=7e-26  Score=221.82  Aligned_cols=189  Identities=17%  Similarity=0.210  Sum_probs=140.2

Q ss_pred             CCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354           51 LAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~  128 (283)
                      ..+.+.+.++++.|+....+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++
T Consensus       338 ~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~  417 (587)
T 3qf4_A          338 VEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG  417 (587)
T ss_dssp             CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred             CCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence            346788999999998777789999999855 9999999999999999999999999998 99999999998888888899


Q ss_pred             hccccCCchH-------HHHHhCCCCCCChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354          129 RNGALPEERI-------RAVETGGCPHAAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA  192 (283)
Q Consensus       129 ~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~  192 (283)
                      +++||||++.       +.+.+ +.+.... +......+  .+.++.  ...+++..+.+     ||||+||+++||+++
T Consensus       418 ~i~~v~Q~~~lf~~tv~eni~~-~~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~  495 (587)
T 3qf4_A          418 HISAVPQETVLFSGTIKENLKW-GREDATD-DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV  495 (587)
T ss_dssp             HEEEECSSCCCCSEEHHHHHTT-TCSSCCH-HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred             heEEECCCCcCcCccHHHHHhc-cCCCCCH-HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence            9999999874       22323 2222222 11111111  111110  11244444443     999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          193 -DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                       +|.++++| ||++.|...+           .+.+          +..||+|++++.|++++.|+..+++..
T Consensus       496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~  567 (587)
T 3qf4_A          496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH  567 (587)
T ss_dssp             TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence             58887777 9998763211           1111          368999999999999999999887653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.92  E-value=5.9e-26  Score=210.48  Aligned_cols=170  Identities=12%  Similarity=0.048  Sum_probs=128.0

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC------CCHHHHHHhccccCCchH--
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT------KEDGEFLMRNGALPEERI--  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~------~~~~~~~~~ig~v~q~~~--  138 (283)
                      ..++++++|.. +|++++|+||||||||||||+|+|+++|+ |+|.+.+.++..      ..+.  ++.+|||||+..  
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~r~ig~v~Q~~~l~   93 (372)
T 1g29_1           16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--DRDIAMVFQSYALY   93 (372)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--GSSEEEECSCCCCC
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--HCCEEEEeCCCccC
Confidence            34788999985 59999999999999999999999999998 999999887654      3332  467999999752  


Q ss_pred             ------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          139 ------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       139 ------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                            +.+.++.... ....+....+.+.++.+++....++.+.+ ||||+||++|||+|+ +|.++|+| |+++.|..
T Consensus        94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~  173 (372)
T 1g29_1           94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK  173 (372)
T ss_dssp             TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHH
T ss_pred             CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence                  2222221100 11112223556788888888878888887 999999999999998 58888888 99997632


Q ss_pred             -------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 -------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 -------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                   ++.+.+           ..+||+|++++.|++.+.|++.+++.
T Consensus       174 ~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~  229 (372)
T 1g29_1          174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (372)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence                         111222           16799999999999999999888765

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.92  E-value=2.3e-25  Score=195.09  Aligned_cols=165  Identities=18%  Similarity=0.124  Sum_probs=122.9

Q ss_pred             Cccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HH
Q 023354           71 PILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RA  140 (283)
Q Consensus        71 ~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~  140 (283)
                      .+++++|. .+ ++++|+||||||||||+++|+|+++|+ |+|.+.+.++.....  .++.+||+||++.        +.
T Consensus        14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~l~~~ltv~en   90 (240)
T 2onk_A           14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP--ERRGIGFVPQDYALFPHLSVYRN   90 (240)
T ss_dssp             EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT--TTSCCBCCCSSCCCCTTSCHHHH
T ss_pred             EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCch--hhCcEEEEcCCCccCCCCcHHHH
Confidence            38888887 56 999999999999999999999999998 999999988754322  2467999999752        23


Q ss_pred             HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCch---------
Q 023354          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIP---------  208 (283)
Q Consensus       141 i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~---------  208 (283)
                      +.++... .........+.+.++.+++....+..+.+ ||||+||++||++++. |.++++| |+++.|..         
T Consensus        91 l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l  169 (240)
T 2onk_A           91 IAYGLRN-VERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL  169 (240)
T ss_dssp             HHTTCTT-SCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHH-cCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            3333211 11122233556788888877777777777 9999999999999994 7777777 99997632         


Q ss_pred             ----hhcCCcc-----------cccCEEEEEcCCcccccCChHHHH
Q 023354          209 ----RKGGPGI-----------TQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       209 ----~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                          ++.+.++           .+||++++++.|++.+.|++.+++
T Consensus       170 ~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  215 (240)
T 2onk_A          170 RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             HHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence                1112221           679999999999999888876654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.92  E-value=4.2e-26  Score=212.50  Aligned_cols=182  Identities=13%  Similarity=0.100  Sum_probs=136.4

Q ss_pred             CccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhcc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      +.+...++++.|......++++++|..+ |++++|+|||||||||||++|+|+++.+|+|.+.+.++...+..++++.+|
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig   97 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFG   97 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEE
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEE
Confidence            4567778888887666678999999855 999999999999999999999999984499999999998888878888999


Q ss_pred             ccCCchHH-------HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCccc------------CCchHHHHHHHHHHhc
Q 023354          132 ALPEERIR-------AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLC------------ESGGDNLAANFSRELA  192 (283)
Q Consensus       132 ~v~q~~~~-------~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~------------eSgGq~q~~~ia~al~  192 (283)
                      ||||++..       .+...+   ....   ..+.+.++.+.+....++.+.            -||||+||++|||+|+
T Consensus        98 ~v~Q~~~lf~~tv~enl~~~~---~~~~---~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~  171 (390)
T 3gd7_A           98 VIPQKVFIFSGTFRKNLDPNA---AHSD---QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL  171 (390)
T ss_dssp             EESCCCCCCSEEHHHHHCTTC---CSCH---HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred             EEcCCcccCccCHHHHhhhcc---ccCH---HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence            99998631       111111   1111   233455666555443333332            2999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 -DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       +|.|+|+| |+++.|...+           .+.+          +..||+|++++.|++.+.|++.+++.
T Consensus       172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~  242 (390)
T 3gd7_A          172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH  242 (390)
T ss_dssp             TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence             58888888 9888653210           0111          36799999999999999999988875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.92  E-value=1.4e-25  Score=219.30  Aligned_cols=184  Identities=20%  Similarity=0.201  Sum_probs=139.3

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|+....+.+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus       337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~  416 (578)
T 4a82_A          337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ  416 (578)
T ss_dssp             SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred             CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence            45688889999998777789999999854 9999999999999999999999999998 999999999988888888999


Q ss_pred             ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHHHHHH
Q 023354          130 NGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRE  190 (283)
Q Consensus       130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ia~a  190 (283)
                      +||+||++.       +.+.++ .+.... +.   +.+.++....       ..+++..+.+     ||||+||+++||+
T Consensus       417 i~~v~Q~~~l~~~tv~eni~~~-~~~~~~-~~---~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra  491 (578)
T 4a82_A          417 IGLVQQDNILFSDTVKENILLG-RPTATD-EE---VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI  491 (578)
T ss_dssp             EEEECSSCCCCSSBHHHHHGGG-CSSCCH-HH---HHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred             eEEEeCCCccCcccHHHHHhcC-CCCCCH-HH---HHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence            999999863       223333 222221 11   2222222211       2244444443     9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.++++| ||++.|...+           .+.          .+..||+|++++.|++.+.|++.+++.
T Consensus       492 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~  564 (578)
T 4a82_A          492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA  564 (578)
T ss_dssp             HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            98 68888877 9998763211           011          136799999999999999999887764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.92  E-value=3.2e-25  Score=196.37  Aligned_cols=183  Identities=16%  Similarity=0.162  Sum_probs=128.6

Q ss_pred             CccccccCCCCCCCCC-CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRR-APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+...++++.|.... ..++++++|.. +|++++|+||||||||||+++|+|++++.|+|.+.+.++.......+++.+
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i   95 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII   95 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence            3466677777776442 46889999985 599999999999999999999999998779999999888665566677889


Q ss_pred             cccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHcccc-------ccC----CCcccC-CchHHHHHHHHHHh
Q 023354          131 GALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL-------FKA----DLLLCE-SGGDNLAANFSREL  191 (283)
Q Consensus       131 g~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-------~~~----d~~i~e-SgGq~q~~~ia~al  191 (283)
                      +|+||++.       +.+.++. .... .+.   +.+.++.+...       ..+    +..+.+ |+||+||++|||++
T Consensus        96 ~~v~Q~~~l~~~tv~enl~~~~-~~~~-~~~---~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL  170 (260)
T 2ghi_A           96 GIVPQDTILFNETIKYNILYGK-LDAT-DEE---VIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL  170 (260)
T ss_dssp             EEECSSCCCCSEEHHHHHHTTC-TTCC-HHH---HHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred             EEEcCCCcccccCHHHHHhccC-CCCC-HHH---HHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence            99999863       2333332 1111 111   22233322211       111    223334 99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      + +|.|+++| |+++.|....           .+.+          +..||++++++.|++.+.|++.+++.
T Consensus       171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  242 (260)
T 2ghi_A          171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK  242 (260)
T ss_dssp             HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            8 68888888 9999763210           1111          25699999999999998888766653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.92  E-value=5.5e-25  Score=232.34  Aligned_cols=189  Identities=17%  Similarity=0.166  Sum_probs=147.0

Q ss_pred             CCCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354           51 LAPHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~  127 (283)
                      ..|.+.+.+++|.|+... .+.+++++|..+ |++++|+||+|||||||+++|+|++.|+ |+|.+++.++...+...++
T Consensus       412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr  491 (1321)
T 4f4c_A          412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR  491 (1321)
T ss_dssp             CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred             CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence            356799999999999765 578999999855 9999999999999999999999999998 9999999999999999999


Q ss_pred             HhccccCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354          128 MRNGALPEERI------RAVETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSRELA  192 (283)
Q Consensus       128 ~~ig~v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~  192 (283)
                      ++++||+|++.      ..+...|.+..+. +.+..+.+  .+.++  .+.++++..++|     |||||||++||||+.
T Consensus       492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~-~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~  570 (1321)
T 4f4c_A          492 KNVAVVSQEPALFNCTIEENISLGKEGITR-EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV  570 (1321)
T ss_dssp             HHEEEECSSCCCCSEEHHHHHHTTCTTCCH-HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred             hcccccCCcceeeCCchhHHHhhhcccchH-HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence            99999999985      2333334444332 22221111  11111  134678888888     999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh-----------c----------CCcccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 -DYIIYIID-VSGGDKIPRK-----------G----------GPGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~-----------~----------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       +|.|+++| ||+..|...+           .          ..+++.||+|++++.|++++.|+..+++.
T Consensus       571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~  641 (1321)
T 4f4c_A          571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA  641 (1321)
T ss_dssp             TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred             cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence             57777766 9998663211           0          12358999999999999999999888764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.91  E-value=8.3e-25  Score=214.03  Aligned_cols=185  Identities=17%  Similarity=0.176  Sum_probs=137.4

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|+.+..+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b60_A          339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ  418 (582)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred             CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence            4568888999998754457899999985 59999999999999999999999999998 999999999987777788889


Q ss_pred             ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHcccc-------ccCCCcccC-----CchHHHHHHHHHH
Q 023354          130 NGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRE  190 (283)
Q Consensus       130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-------~~~d~~i~e-----SgGq~q~~~ia~a  190 (283)
                      ++|+||++.       +.+.++..+... .+.   +.+.++.++..       .+++..+.+     ||||+||+++||+
T Consensus       419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~-~~~---~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra  494 (582)
T 3b60_A          419 VALVSQNVHLFNDTVANNIAYARTEEYS-REQ---IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA  494 (582)
T ss_dssp             EEEECSSCCCCSSBHHHHHHTTTTSCCC-HHH---HHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred             CeEEccCCcCCCCCHHHHHhccCCCCCC-HHH---HHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence            999999863       333343212222 222   22333333221       234444443     9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.++++| ||++.|...+           .+.          .+..||+|++++.|++.+.|++.+.+.
T Consensus       495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  567 (582)
T 3b60_A          495 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA  567 (582)
T ss_dssp             HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence            98 68888887 9998763211           111          136799999999999999898877654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.91  E-value=8.9e-25  Score=213.81  Aligned_cols=185  Identities=16%  Similarity=0.169  Sum_probs=136.4

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|+....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~  418 (582)
T 3b5x_A          339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH  418 (582)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence            3568888999999754456899999985 49999999999999999999999999998 999999999887777778889


Q ss_pred             ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHcccc-------ccCCCcccC-----CchHHHHHHHHHH
Q 023354          130 NGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNL-------FKADLLLCE-----SGGDNLAANFSRE  190 (283)
Q Consensus       130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-------~~~d~~i~e-----SgGq~q~~~ia~a  190 (283)
                      +||+||++.       +.+.++..+... .+   .+.+.++.++..       ++++..+.+     ||||+||+++||+
T Consensus       419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~-~~---~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra  494 (582)
T 3b5x_A          419 FALVSQNVHLFNDTIANNIAYAAEGEYT-RE---QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA  494 (582)
T ss_pred             eEEEcCCCccccccHHHHHhccCCCCCC-HH---HHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence            999999874       222232212211 22   222333333221       234444443     9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.++++| ||++.|...+           .+.+          +..||+|++++.|++.+.|+..+++.
T Consensus       495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  567 (582)
T 3b5x_A          495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA  567 (582)
T ss_pred             HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            98 58777777 9998653211           1111          26799999999999999898876653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.91  E-value=4.1e-25  Score=194.88  Aligned_cols=181  Identities=16%  Similarity=0.160  Sum_probs=127.3

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP  134 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~  134 (283)
                      ..++++.|.. ....+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.             +++.+||+|
T Consensus         7 i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~   72 (253)
T 2nq2_C            7 VENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVP   72 (253)
T ss_dssp             EEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEEC
T ss_pred             EeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEc
Confidence            3444555531 245789999985 59999999999999999999999999998 9887             124689999


Q ss_pred             CchH--------HHHHhCCCCC-----CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEE
Q 023354          135 EERI--------RAVETGGCPH-----AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYII  199 (283)
Q Consensus       135 q~~~--------~~i~~~g~~~-----~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~ll  199 (283)
                      |++.        +.+.++....     .........+.+.++.+++....+..+.+ |+||+||++||++++ +|.++++
T Consensus        73 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL  152 (253)
T 2nq2_C           73 QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILL  152 (253)
T ss_dssp             SCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            8752        2333332111     01122234556778888877777777777 999999999999998 5888888


Q ss_pred             e-CCCCCCchh-------------hcCCcc-----------cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCe
Q 023354          200 D-VSGGDKIPR-------------KGGPGI-----------TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPF  252 (283)
Q Consensus       200 D-pt~g~~l~~-------------~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i  252 (283)
                      | |+++.|...             +.+.++           .+||++++++.|+ .+.|++.+++........++.++
T Consensus       153 DEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~~~~~~~~~~~~  229 (253)
T 2nq2_C          153 DEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTSENLTALFHLPM  229 (253)
T ss_dssp             SSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCHHHHHHHHTSCE
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCcHHHHHHhCCCc
Confidence            8 999976321             112221           6799999999999 87787777665433333344444

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=7.5e-25  Score=214.95  Aligned_cols=183  Identities=18%  Similarity=0.230  Sum_probs=136.3

Q ss_pred             CCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHh
Q 023354           52 APHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMR  129 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~  129 (283)
                      .+.+.+.++++.|.. ..+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+..++++.
T Consensus       352 ~~~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~  430 (598)
T 3qf4_B          352 RGEIEFKNVWFSYDK-KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS  430 (598)
T ss_dssp             CCCEEEEEEECCSSS-SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             CCeEEEEEEEEECCC-CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence            466888999999864 3468999999865 9999999999999999999999999998 999999999988888889999


Q ss_pred             ccccCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccc-------cccCCCcccC-----CchHHHHHHHHHH
Q 023354          130 NGALPEERI-------RAVETGGCPHAAIREDISINLGPLEELSN-------LFKADLLLCE-----SGGDNLAANFSRE  190 (283)
Q Consensus       130 ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~-------~~~~d~~i~e-----SgGq~q~~~ia~a  190 (283)
                      ++|+||++.       +.+.++ .+..... ..   .+.++....       ..+++..+.+     ||||+||++|||+
T Consensus       431 i~~v~Q~~~lf~~tv~eni~~~-~~~~~~~-~~---~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra  505 (598)
T 3qf4_B          431 IGIVLQDTILFSTTVKENLKYG-NPGATDE-EI---KEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA  505 (598)
T ss_dssp             EEEECTTCCCCSSBHHHHHHSS-STTCCTT-HH---HHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred             eEEEeCCCccccccHHHHHhcC-CCCCCHH-HH---HHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence            999999874       223332 2222111 11   122222111       1234444433     9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++ +|.++++| ||++.|...+           .+.+          +..||+|++++.|++.+.|++.+.+.
T Consensus       506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~  578 (598)
T 3qf4_B          506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ  578 (598)
T ss_dssp             HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHH
T ss_pred             HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            98 58888888 9998763211           1111          36799999999999999999887654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.91  E-value=2.2e-24  Score=191.73  Aligned_cols=184  Identities=13%  Similarity=0.004  Sum_probs=129.4

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc--ccCC-CcEEEEeecCCCCCHHHH-HH
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEF-LM  128 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~--~~~~-g~i~i~~~d~~~~~~~~~-~~  128 (283)
                      .+...++++.|.  ...++++++|.. +|++++|+||||||||||+|+|+|+  ++|+ |+|.+.+.++.......+ ++
T Consensus        20 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~   97 (267)
T 2zu0_C           20 MLSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE   97 (267)
T ss_dssp             CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred             eEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence            355666776663  245789999985 5999999999999999999999998  4576 999999988765555444 34


Q ss_pred             hccccCCchH--------HHHHhC--------CCCCCChHHHHHHHHHHHHHcccc-ccCCCccc-C-CchHHHHHHHHH
Q 023354          129 RNGALPEERI--------RAVETG--------GCPHAAIREDISINLGPLEELSNL-FKADLLLC-E-SGGDNLAANFSR  189 (283)
Q Consensus       129 ~ig~v~q~~~--------~~i~~~--------g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~-e-SgGq~q~~~ia~  189 (283)
                      .++|++|++.        +++.+.        +.......+....+.+.++.+++. ...+..+. + |+||+||++||+
T Consensus        98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr  177 (267)
T 2zu0_C           98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ  177 (267)
T ss_dssp             TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred             CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence            5899999862        112111        111111112223456678888775 35566664 3 999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchh------------hcCCc----------c-cc-cCEEEEEcCCcccccCChHHHH
Q 023354          190 ELA-DYIIYIID-VSGGDKIPR------------KGGPG----------I-TQ-ADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~------------~~~~~----------i-~~-ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      +|+ +|.|+++| |+++.|...            +.+.+          + .. ||++++++.|++.+.|++.++.
T Consensus       178 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  253 (267)
T 2zu0_C          178 MAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK  253 (267)
T ss_dssp             HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred             HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence            998 68888888 999976321            11111          1 33 8999999999999888776543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.90  E-value=4.4e-24  Score=186.53  Aligned_cols=169  Identities=17%  Similarity=0.174  Sum_probs=113.8

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      ...++++.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+             .+||+
T Consensus         5 ~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v   71 (237)
T 2cbz_A            5 TVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYV   71 (237)
T ss_dssp             EEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEE
T ss_pred             EEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEE
Confidence            344555566433456899999985 59999999999999999999999999987 9998866             37888


Q ss_pred             CCchH-------HHHHhCCCCCCChHHHHHHHHHH---HHHcccc-----ccCCCcccC-CchHHHHHHHHHHhc-CCcE
Q 023354          134 PEERI-------RAVETGGCPHAAIREDISINLGP---LEELSNL-----FKADLLLCE-SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       134 ~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~---l~~l~~~-----~~~d~~i~e-SgGq~q~~~ia~al~-~~~l  196 (283)
                      ||++.       +.+.++.....   +....+.+.   ++.+...     ...+..+.+ |+||+||++|||+++ +|.+
T Consensus        72 ~Q~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l  148 (237)
T 2cbz_A           72 PQQAWIQNDSLRENILFGCQLEE---PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI  148 (237)
T ss_dssp             CSSCCCCSEEHHHHHHTTSCCCT---THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred             cCCCcCCCcCHHHHhhCccccCH---HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence            88752       23333221111   111111111   1122111     112344455 999999999999998 6888


Q ss_pred             EEEe-CCCCCCchh--------------hcCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          197 YIID-VSGGDKIPR--------------KGGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       197 ~llD-pt~g~~l~~--------------~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +++| |+++.|...              ..+.+          +..||++++++.|++.+.|++.+++.
T Consensus       149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  217 (237)
T 2cbz_A          149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA  217 (237)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence            8888 999865311              01111          25699999999999998888776553

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.90  E-value=2.5e-24  Score=189.54  Aligned_cols=178  Identities=15%  Similarity=0.025  Sum_probs=121.4

Q ss_pred             cccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc--ccCC-CcEEEEeecCCCCCHHHHH-Hhcc
Q 023354           57 EPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF--LRDK-YSLAAVTNDIFTKEDGEFL-MRNG  131 (283)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~--~~~~-g~i~i~~~d~~~~~~~~~~-~~ig  131 (283)
                      ..++++.|..  ..++++++|.. +|++++|+||||||||||+++|+|+  ++|+ |+|.+.+.++......++. ..++
T Consensus         6 ~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~   83 (250)
T 2d2e_A            6 IRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLF   83 (250)
T ss_dssp             EEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBC
T ss_pred             EEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEE
Confidence            3445555532  35788999985 5999999999999999999999998  6777 9999999888766554443 3589


Q ss_pred             ccCCchH--------HHHHhCCC---C-CCChHHHHHHHHHHHHHccc-cccCCCcccC--CchHHHHHHHHHHhc-CCc
Q 023354          132 ALPEERI--------RAVETGGC---P-HAAIREDISINLGPLEELSN-LFKADLLLCE--SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~---~-~~~~~~~~~~~~~~l~~l~~-~~~~d~~i~e--SgGq~q~~~ia~al~-~~~  195 (283)
                      |++|++.        +.+.++..   . .....+....+.+.++.++. ....++.+.+  |+||+||++||++|+ +|.
T Consensus        84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~  163 (250)
T 2d2e_A           84 LAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPT  163 (250)
T ss_dssp             CCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCS
T ss_pred             EeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCC
Confidence            9999753        12221110   0 00111222345567777776 3555666654  999999999999998 688


Q ss_pred             EEEEe-CCCCCCchh------------hcCCc----------c-cc-cCEEEEEcCCcccccCChH
Q 023354          196 IYIID-VSGGDKIPR------------KGGPG----------I-TQ-ADLLVINKTDLASAIGADL  236 (283)
Q Consensus       196 l~llD-pt~g~~l~~------------~~~~~----------i-~~-ad~ivi~K~g~i~~~g~~~  236 (283)
                      ++++| |+++.|...            +.+.+          + .+ ||++++++.|++.+.|++.
T Consensus       164 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          164 YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             EEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence            88888 999976321            11111          1 35 5999999999998877764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.89  E-value=1.7e-24  Score=186.40  Aligned_cols=145  Identities=21%  Similarity=0.171  Sum_probs=106.6

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      .....++++.|..   ..+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++.     .+++.++
T Consensus        10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~   81 (214)
T 1sgw_A           10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF   81 (214)
T ss_dssp             EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred             eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence            3566677777743   6789999985 59999999999999999999999999998 99999887764     2457799


Q ss_pred             ccCCchH--------HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          132 ALPEERI--------RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      |+||++.        +.+.++...... ......+.+.++.++.... +..+.+ |+||+||++||++++ +|.++++| 
T Consensus        82 ~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDE  159 (214)
T 1sgw_A           82 FLPEEIIVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDD  159 (214)
T ss_dssp             EECSSCCCCTTSBHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHHhcCC-chHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            9999752        122221000000 0011234567777776655 666766 999999999999999 58888888 


Q ss_pred             CCCCCCch
Q 023354          201 VSGGDKIP  208 (283)
Q Consensus       201 pt~g~~l~  208 (283)
                      |+++.|..
T Consensus       160 Pts~LD~~  167 (214)
T 1sgw_A          160 PVVAIDED  167 (214)
T ss_dssp             TTTTSCTT
T ss_pred             CCcCCCHH
Confidence            99997753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.89  E-value=1.4e-23  Score=182.48  Aligned_cols=167  Identities=16%  Similarity=0.118  Sum_probs=113.2

Q ss_pred             cccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +...++++.|.....+.+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+             .++|
T Consensus         7 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~   73 (229)
T 2pze_A            7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISF   73 (229)
T ss_dssp             EEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEE
T ss_pred             EEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEE
Confidence            4555666777544557899999985 59999999999999999999999999998 9998865             3788


Q ss_pred             cCCchH-------HHHHhCCCCCCChHHHHHHHHHHHHHccccc-----------cCCCcccC-CchHHHHHHHHHHhc-
Q 023354          133 LPEERI-------RAVETGGCPHAAIREDISINLGPLEELSNLF-----------KADLLLCE-SGGDNLAANFSRELA-  192 (283)
Q Consensus       133 v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~-----------~~d~~i~e-SgGq~q~~~ia~al~-  192 (283)
                      +||++.       +.+.++. ...  .....   +.++.+....           ..+..+.+ |+||+||++|||+++ 
T Consensus        74 v~q~~~~~~~tv~enl~~~~-~~~--~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~  147 (229)
T 2pze_A           74 CSQFSWIMPGTIKENIIFGV-SYD--EYRYR---SVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK  147 (229)
T ss_dssp             ECSSCCCCSBCHHHHHHTTS-CCC--HHHHH---HHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred             EecCCcccCCCHHHHhhccC-CcC--hHHHH---HHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence            888752       2233321 111  11111   1111111111           11122334 999999999999998 


Q ss_pred             CCcEEEEe-CCCCCCchh----------h--cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 DYIIYIID-VSGGDKIPR----------K--GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 ~~~l~llD-pt~g~~l~~----------~--~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|.++++| |+++.|...          +  .+.+          +..||++++++.|++.+.|++.+++.
T Consensus       148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  218 (229)
T 2pze_A          148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN  218 (229)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred             CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            58888888 999865321          0  0111          14699999999999998887766543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.89  E-value=3.6e-23  Score=217.99  Aligned_cols=189  Identities=17%  Similarity=0.178  Sum_probs=140.1

Q ss_pred             CCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354           52 APHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~  128 (283)
                      .|.+.+.++++.|+... .+.+++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++
T Consensus      1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A         1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp             SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred             CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence            46788899999998653 468999999855 9999999999999999999999999998 99999999999888888899


Q ss_pred             hccccCCchH------HHHHhCCCCC-CChHHHHHHHHH--HHHHcc--ccccCCCcccC-----CchHHHHHHHHHHhc
Q 023354          129 RNGALPEERI------RAVETGGCPH-AAIREDISINLG--PLEELS--NLFKADLLLCE-----SGGDNLAANFSRELA  192 (283)
Q Consensus       129 ~ig~v~q~~~------~~i~~~g~~~-~~~~~~~~~~~~--~l~~l~--~~~~~d~~i~e-----SgGq~q~~~ia~al~  192 (283)
                      .++||||++.      ..+...+.+. ....+.+....+  .+.++.  ...+++..+.|     ||||+||++|||+++
T Consensus      1108 ~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A         1108 QLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp             SCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence            9999999973      1222222221 111222221111  122221  23356666665     999999999999998


Q ss_pred             -CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          193 -DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       193 -~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       +|.|+++| ||++.|...+           .+.          .+..||+|++++.|++.+.|++.+.+.
T Consensus      1188 ~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1188 RQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp             HCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence             57777777 9999764211           111          236799999999999999999887664

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.89  E-value=2.4e-23  Score=219.36  Aligned_cols=186  Identities=18%  Similarity=0.212  Sum_probs=140.2

Q ss_pred             CCCccccccCCCCCCCCC-CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354           51 LAPHSHEPIYSPGYFSRR-APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~  127 (283)
                      ..|.+.+.++++.|+... .+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...++
T Consensus       384 ~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r  463 (1284)
T 3g5u_A          384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR  463 (1284)
T ss_dssp             CCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred             CCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence            357789999999998754 478999999855 9999999999999999999999999998 9999999999988888999


Q ss_pred             HhccccCCchH-------HHHHhCCCCCCChHHHHHHHH------HHHHHccccccCCCcccC-----CchHHHHHHHHH
Q 023354          128 MRNGALPEERI-------RAVETGGCPHAAIREDISINL------GPLEELSNLFKADLLLCE-----SGGDNLAANFSR  189 (283)
Q Consensus       128 ~~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~------~~l~~l~~~~~~d~~i~e-----SgGq~q~~~ia~  189 (283)
                      +.+|||+|++.       +.+.++. +.... +.+....      +.+..+  ..+++..+.|     ||||+||++|||
T Consensus       464 ~~i~~v~Q~~~l~~~ti~eNi~~g~-~~~~~-~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~~g~~LSgGq~QriaiAR  539 (1284)
T 3g5u_A          464 EIIGVVSQEPVLFATTIAENIRYGR-EDVTM-DEIEKAVKEANAYDFIMKL--PHQFDTLVGERGAQLSGGQKQRIAIAR  539 (1284)
T ss_dssp             HHEEEECSSCCCCSSCHHHHHHHHC-SSCCH-HHHHHHHHHTTCHHHHHHS--TTGGGCCCSSSSCSSCHHHHHHHHHHH
T ss_pred             hheEEEcCCCccCCccHHHHHhcCC-CCCCH-HHHHHHHHHhCcHHHHHhc--cccccccccCCCCccCHHHHHHHHHHH
Confidence            99999999874       2333332 22221 1111111      112221  2345555554     999999999999


Q ss_pred             Hhc-CCcEEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          190 ELA-DYIIYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       190 al~-~~~l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +++ +|.|+++| ||++.|...+           .+.+          +..||+|++++.|++++.|+..+.+.
T Consensus       540 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~  613 (1284)
T 3g5u_A          540 ALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR  613 (1284)
T ss_dssp             HHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred             HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence            998 68777777 9998763211           1111          36799999999999999999887764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.88  E-value=9.1e-24  Score=187.27  Aligned_cols=165  Identities=19%  Similarity=0.069  Sum_probs=120.4

Q ss_pred             CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc-ccCCchHH------HH
Q 023354           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR------AV  141 (283)
Q Consensus        70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~------~i  141 (283)
                      ..+++++|..+|++++|+||||||||||+++|+|++ |+ |+|.+.+.++...  .. ++.++ |+||++..      .+
T Consensus        19 ~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l~~tv~enl   94 (263)
T 2pjz_A           19 FSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEIGVTVNDIV   94 (263)
T ss_dssp             EEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCTTSBHHHHH
T ss_pred             eeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCccCCcHHHHH
Confidence            468888888449999999999999999999999999 98 9999988776533  22 56799 99997521      11


Q ss_pred             HhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh--------
Q 023354          142 ETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR--------  209 (283)
Q Consensus       142 ~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~--------  209 (283)
                      .++......   ....+.+.++.+++. ...+..+.+ |+||+||+++|++++ +|.++++| |+++.|...        
T Consensus        95 ~~~~~~~~~---~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L  171 (263)
T 2pjz_A           95 YLYEELKGL---DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI  171 (263)
T ss_dssp             HHHHHHTCC---CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred             HHhhhhcch---HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH
Confidence            111000000   112345677777776 666777777 999999999999998 58888888 999976421        


Q ss_pred             -hcCCc-----------ccccC-EEEEEcCCcccccCChHHHHhH
Q 023354          210 -KGGPG-----------ITQAD-LLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       210 -~~~~~-----------i~~ad-~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                       +...+           ..+|| ++++++.|++.+.|++.+++..
T Consensus       172 ~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~  216 (263)
T 2pjz_A          172 KEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES  216 (263)
T ss_dssp             HHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred             HHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence             11102           26799 9999999999988888776643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.85  E-value=1.2e-21  Score=175.90  Aligned_cols=167  Identities=16%  Similarity=0.145  Sum_probs=103.7

Q ss_pred             CccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhc
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      +.+...++++.+    ...+++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+             .+
T Consensus        39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i  101 (290)
T 2bbs_A           39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI  101 (290)
T ss_dssp             -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred             ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence            345555555542    46889999985 59999999999999999999999999987 9998764             37


Q ss_pred             cccCCchH-------HHHHhCCCCCCChHHHHHHHHH------HHHHccccc--cCCCcccC-CchHHHHHHHHHHhc-C
Q 023354          131 GALPEERI-------RAVETGGCPHAAIREDISINLG------PLEELSNLF--KADLLLCE-SGGDNLAANFSRELA-D  193 (283)
Q Consensus       131 g~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~------~l~~l~~~~--~~d~~i~e-SgGq~q~~~ia~al~-~  193 (283)
                      +|+||++.       +.+.  +....  ........+      .+..+....  ..+..+.+ ||||+||++|||+++ +
T Consensus       102 ~~v~Q~~~l~~~tv~enl~--~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~  177 (290)
T 2bbs_A          102 SFCSQNSWIMPGTIKENII--GVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD  177 (290)
T ss_dssp             EEECSSCCCCSSBHHHHHH--TTCCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred             EEEeCCCccCcccHHHHhh--Ccccc--hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence            88888752       2222  22111  111111111      111111000  11122334 999999999999998 4


Q ss_pred             CcEEEEe-CCCCCCchh----------hc--CCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          194 YIIYIID-VSGGDKIPR----------KG--GPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       194 ~~l~llD-pt~g~~l~~----------~~--~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      |.++++| |+++.|...          +.  +.+          +..||++++++.|++.+.|++.+++.
T Consensus       178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  247 (290)
T 2bbs_A          178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN  247 (290)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence            8888888 999865321          10  111          25699999999999998888877654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.78  E-value=2.5e-19  Score=175.65  Aligned_cols=151  Identities=17%  Similarity=0.124  Sum_probs=107.4

Q ss_pred             ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354           72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA  149 (283)
Q Consensus        72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~  149 (283)
                      +...+|. .+|++++|+||||||||||+++|+|+++|+ |+|.+             ...+||+||++...      ...
T Consensus       372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~------~~~  432 (607)
T 3bk7_A          372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAE------YEG  432 (607)
T ss_dssp             EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCC------CSS
T ss_pred             EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCC------CCC
Confidence            4444444 469999999999999999999999999987 88864             13589999875210      001


Q ss_pred             ChHH-----------HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchh------
Q 023354          150 AIRE-----------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPR------  209 (283)
Q Consensus       150 ~~~~-----------~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~------  209 (283)
                      ++.+           ....+.+.|+.++.....++.+.+ ||||+||++||++|+. |.|+|+| ||++.|...      
T Consensus       433 tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~  512 (607)
T 3bk7_A          433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR  512 (607)
T ss_dssp             BHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             cHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH
Confidence            1110           112344567777777777888877 9999999999999994 8888888 999976431      


Q ss_pred             -------hcCCcc-----------cccCEEEEEcC--CcccccCChHHHHhH
Q 023354          210 -------KGGPGI-----------TQADLLVINKT--DLASAIGADLAVMER  241 (283)
Q Consensus       210 -------~~~~~i-----------~~ad~ivi~K~--g~i~~~g~~~e~~~~  241 (283)
                             +.+.++           .+||+|++++.  +.+...|++.+++..
T Consensus       513 ~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~  564 (607)
T 3bk7_A          513 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG  564 (607)
T ss_dssp             HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence                   112221           67999999984  555567888776653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.78  E-value=1.1e-19  Score=176.17  Aligned_cols=151  Identities=19%  Similarity=0.127  Sum_probs=105.8

Q ss_pred             ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC
Q 023354           72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA  149 (283)
Q Consensus        72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~  149 (283)
                      +...+|. .+|++++|+||||||||||+++|+|+++|+ |+|.+             ...+||+||++...      +..
T Consensus       302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~------~~~  362 (538)
T 1yqt_A          302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKAD------YEG  362 (538)
T ss_dssp             EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCC------CSS
T ss_pred             EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCC------CCC
Confidence            3344443 469999999999999999999999999987 88864             13588999875210      111


Q ss_pred             ChHHH-----------HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh------
Q 023354          150 AIRED-----------ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR------  209 (283)
Q Consensus       150 ~~~~~-----------~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~------  209 (283)
                      ++.+.           ...+.+.++.++.....++.+.+ ||||+||+.||++|+ +|.|+|+| ||++.|+..      
T Consensus       363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~  442 (538)
T 1yqt_A          363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR  442 (538)
T ss_dssp             BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred             cHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence            11111           11234456666666667777777 999999999999999 48888888 999976431      


Q ss_pred             -------hcCCcc-----------cccCEEEEEcC--CcccccCChHHHHhH
Q 023354          210 -------KGGPGI-----------TQADLLVINKT--DLASAIGADLAVMER  241 (283)
Q Consensus       210 -------~~~~~i-----------~~ad~ivi~K~--g~i~~~g~~~e~~~~  241 (283)
                             +.+.++           .+||+|++++.  +.+...|++.+++..
T Consensus       443 ~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~  494 (538)
T 1yqt_A          443 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG  494 (538)
T ss_dssp             HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence                   112221           68999999984  566667887776653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.76  E-value=1e-18  Score=169.22  Aligned_cols=137  Identities=18%  Similarity=0.127  Sum_probs=95.2

Q ss_pred             ccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhCC
Q 023354           76 NFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETGG  145 (283)
Q Consensus        76 ~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~g  145 (283)
                      +|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+            ..++|++|+..        +.+....
T Consensus       288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~~~l~~~~  355 (538)
T 3ozx_A          288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQQYLENAS  355 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHHHHHHHHC
T ss_pred             cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHHHHHHHhh
Confidence            443 469999999999999999999999999998 9987533            24566666431        1122111


Q ss_pred             CCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh-------------
Q 023354          146 CPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR-------------  209 (283)
Q Consensus       146 ~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~-------------  209 (283)
                      ......  ....+.+.++.+.+....++.+.+ ||||+||++||++|+ +|.|+|+| ||++.|...             
T Consensus       356 ~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~  433 (538)
T 3ozx_A          356 KDALST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR  433 (538)
T ss_dssp             SSTTCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhccch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence            111000  011234566777777777888887 999999999999998 48888888 999976431             


Q ss_pred             hcCCc-----------ccccCEEEEEcC
Q 023354          210 KGGPG-----------ITQADLLVINKT  226 (283)
Q Consensus       210 ~~~~~-----------i~~ad~ivi~K~  226 (283)
                      +.+.+           ..+||+|++++.
T Consensus       434 ~~g~tvi~vsHdl~~~~~~aDri~vl~~  461 (538)
T 3ozx_A          434 ERKAVTFIIDHDLSIHDYIADRIIVFKG  461 (538)
T ss_dssp             HTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             hCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            11222           167999999985

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.75  E-value=1.1e-18  Score=159.86  Aligned_cols=202  Identities=18%  Similarity=0.185  Sum_probs=129.1

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHHHHhccccCCchHHHHHhC
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEFLMRNGALPEERIRAVETG  144 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~~~~ig~v~q~~~~~i~~~  144 (283)
                      .+.+++|.. +|++++|+||||||||||+++|+|++.|+ |+|.+.+.++.+...    ...++++++++|++..++.. 
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-  122 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRP-  122 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEEC-
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccccc-
Confidence            566777764 59999999999999999999999999886 999999998864321    12356799999975433221 


Q ss_pred             CCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEE
Q 023354          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVIN  224 (283)
Q Consensus       145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~  224 (283)
                      -..+|........+.+.+..+ ....++.+++|+.|..+........++..++++|+..++++........+.++.+++|
T Consensus       123 ~~~~~~l~G~tr~~~e~~~~~-~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlN  201 (337)
T 2qm8_A          123 SPSSGTLGGVAAKTRETMLLC-EAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVN  201 (337)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEE
T ss_pred             CcccccccchHHHHHHHHHHH-hcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEE
Confidence            111233333333333444222 3457888899988876543333445678889999876654321111123568899999


Q ss_pred             cCCcccccCChHHHHhHHH---HhhcC------CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          225 KTDLASAIGADLAVMERDA---LRMRD------GGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       225 K~g~i~~~g~~~e~~~~~~---~~~~~------~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      |+|+.... .......+.+   .....      ..+++++|++++.|+++|+++|.+..+
T Consensus       202 K~Dl~~~~-~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          202 KADDGDGE-RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CCSTTCCH-HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             chhccCch-hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99975321 0111111111   11111      467899999999999999999988765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.74  E-value=3e-18  Score=167.90  Aligned_cols=160  Identities=13%  Similarity=-0.008  Sum_probs=96.4

Q ss_pred             CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee------cCCCCCHHH-----HHHhccc--cCC
Q 023354           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN------DIFTKEDGE-----FLMRNGA--LPE  135 (283)
Q Consensus        70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~------d~~~~~~~~-----~~~~ig~--v~q  135 (283)
                      ..+.+.....+|++++|+||||||||||||+|+|+++|+ |+|.....      .+.......     +...+.+  .+|
T Consensus        92 ~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  171 (608)
T 3j16_B           92 FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ  171 (608)
T ss_dssp             CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECC
T ss_pred             eeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchh
Confidence            345566666789999999999999999999999999998 88621000      000000000     0011111  111


Q ss_pred             chHHHHHhCCCCCCChHH--------HHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          136 ERIRAVETGGCPHAAIRE--------DISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       136 ~~~~~i~~~g~~~~~~~~--------~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                      ...........+.....+        ....+.+.++.+++....++.+.+ ||||+||++||++|+ +|.++++| ||++
T Consensus       172 ~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~  251 (608)
T 3j16_B          172 YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSY  251 (608)
T ss_dssp             CTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTT
T ss_pred             hhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccC
Confidence            110000000000001110        113455678888887778888888 999999999999998 58888888 9999


Q ss_pred             CCchh------------hcCCcc-----------cccCEEEEEcCCcc
Q 023354          205 DKIPR------------KGGPGI-----------TQADLLVINKTDLA  229 (283)
Q Consensus       205 ~~l~~------------~~~~~i-----------~~ad~ivi~K~g~i  229 (283)
                      +|...            +.+.++           .+||+|++++.+..
T Consensus       252 LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~  299 (608)
T 3j16_B          252 LDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS  299 (608)
T ss_dssp             CCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence            76421            111221           57999999986543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.9e-18  Score=167.95  Aligned_cols=155  Identities=17%  Similarity=0.069  Sum_probs=107.5

Q ss_pred             CcccccccCC-C-----cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-----
Q 023354           71 PILSRNFNER-A-----FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----  138 (283)
Q Consensus        71 ~~~~~~~~~~-g-----~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----  138 (283)
                      .+.+++|... |     ++++|+||||||||||+++|+|+++|+ |+.      +.       ...++|++|+..     
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~  428 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPG  428 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCS
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCc
Confidence            4556666532 4     889999999999999999999999998 752      11       124667776521     


Q ss_pred             ---HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh---
Q 023354          139 ---RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR---  209 (283)
Q Consensus       139 ---~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~---  209 (283)
                         +.+... ......  ......+.++.+.+....+..+.+ ||||+||++||++|+ +|.|+|+| ||++.|...   
T Consensus       429 tv~e~~~~~-~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~  505 (608)
T 3j16_B          429 TVRQLFFKK-IRGQFL--NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRII  505 (608)
T ss_dssp             BHHHHHHHH-CSSTTT--SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHH
T ss_pred             cHHHHHHHH-hhcccc--cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHH
Confidence               111111 110000  112234567777777778888888 999999999999999 48888888 999976421   


Q ss_pred             ----------hcCCc-----------ccccCEEEEEcC--CcccccCChHHHHhH
Q 023354          210 ----------KGGPG-----------ITQADLLVINKT--DLASAIGADLAVMER  241 (283)
Q Consensus       210 ----------~~~~~-----------i~~ad~ivi~K~--g~i~~~g~~~e~~~~  241 (283)
                                +.+.+           ..+||+|++++.  |.+.+.|++.+++..
T Consensus       506 i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~  560 (608)
T 3j16_B          506 CSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG  560 (608)
T ss_dssp             HHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence                      11222           167999999985  888888988888775

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.73  E-value=2.6e-18  Score=174.93  Aligned_cols=62  Identities=21%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             ccccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~  115 (283)
                      .+...++++.|+....+.+++++|.. +|++++|+||||||||||+|+|+|+++|+ |+|.+.+
T Consensus       671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            35566777777654456789999985 59999999999999999999999999998 9998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.73  E-value=3.5e-18  Score=165.53  Aligned_cols=166  Identities=17%  Similarity=0.104  Sum_probs=104.0

Q ss_pred             ccCCCCCCCCCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee----cCCCCCHH----H-H-
Q 023354           58 PIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDG----E-F-  126 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~----d~~~~~~~----~-~-  126 (283)
                      .++++.|.. ...++.+++...+|++++|+||||||||||+|+|+|+++|+ |++.....    .+......    . . 
T Consensus        25 ~~ls~~yg~-~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~  103 (538)
T 1yqt_A           25 EDCVHRYGV-NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN  103 (538)
T ss_dssp             CCEEEECST-TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred             cCcEEEECC-ccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence            345555532 22467777722679999999999999999999999999987 87310000    01111111    1 1 


Q ss_pred             -HHhccccCCchHHHHHhCCCCCCChHHHH------HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354          127 -LMRNGALPEERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (283)
Q Consensus       127 -~~~ig~v~q~~~~~i~~~g~~~~~~~~~~------~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~  197 (283)
                       ...+++++|........  .. .+..+.+      ..+.+.|+.+++....++.+.+ ||||+||++||++|+ +|.|+
T Consensus       104 ~~~~~~~~~q~~~~~~~~--~~-~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lL  180 (538)
T 1yqt_A          104 GEIRPVVKPQYVDLIPKA--VK-GKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFY  180 (538)
T ss_dssp             TSCCCEEECSCGGGSGGG--CC-SBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred             Hhhhhhhhhhhhhhcchh--hh-ccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence             12356666653211110  00 1122211      1345678888877777888887 999999999999998 58888


Q ss_pred             EEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCC
Q 023354          198 IID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTD  227 (283)
Q Consensus       198 llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g  227 (283)
                      |+| ||+++|...            +.+.++           .+||+|++++.+
T Consensus       181 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          181 FFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            888 999976431            112221           579999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.73  E-value=3.4e-18  Score=167.64  Aligned_cols=166  Identities=20%  Similarity=0.137  Sum_probs=104.4

Q ss_pred             ccCCCCCCCCCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee----cCCCCCHH----HH--
Q 023354           58 PIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN----DIFTKEDG----EF--  126 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~----d~~~~~~~----~~--  126 (283)
                      .+++..|.. ....+.+++...+|++++|+|||||||||||++|+|+++|+ |++.....    .+......    ..  
T Consensus        95 ~~ls~~yg~-~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~  173 (607)
T 3bk7_A           95 EDCVHRYGV-NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN  173 (607)
T ss_dssp             GSEEEECST-TCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred             CCeEEEECC-CCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence            345555532 22467777723679999999999999999999999999987 88410000    01111111    11  


Q ss_pred             -HHhccccCCchHHHHHhCCCCCCChHHHH------HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEE
Q 023354          127 -LMRNGALPEERIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIY  197 (283)
Q Consensus       127 -~~~ig~v~q~~~~~i~~~g~~~~~~~~~~------~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~  197 (283)
                       ...+++++|........  .. .+..+.+      ..+.+.|+.+++....++.+.+ ||||+||++||++|+ +|.|+
T Consensus       174 ~~~~i~~~~q~~~~~~~~--~~-~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL  250 (607)
T 3bk7_A          174 GEIRPVVKPQYVDLLPKA--VK-GKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY  250 (607)
T ss_dssp             TSCCCEEECSCGGGGGGT--CC-SBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred             hhcceEEeechhhhchhh--cc-ccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence             12356666653211110  00 0222211      1345678888877777888877 999999999999998 58888


Q ss_pred             EEe-CCCCCCchh------------hcCCcc-----------cccCEEEEEcCC
Q 023354          198 IID-VSGGDKIPR------------KGGPGI-----------TQADLLVINKTD  227 (283)
Q Consensus       198 llD-pt~g~~l~~------------~~~~~i-----------~~ad~ivi~K~g  227 (283)
                      |+| ||+++|...            +.+.++           .+||+|++++.+
T Consensus       251 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            888 999976431            112221           579999999854

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.71  E-value=5.3e-18  Score=168.36  Aligned_cols=173  Identities=20%  Similarity=0.188  Sum_probs=96.4

Q ss_pred             CCCCcccccccC-CCcEEEEEcCCCCcHHHHH---------------------HHHHhcccCC-CcEEEEeecCC--CCC
Q 023354           68 RAPPILSRNFNE-RAFTVGIGGPVGTGKTALM---------------------LALCKFLRDK-YSLAAVTNDIF--TKE  122 (283)
Q Consensus        68 ~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl---------------------~~L~g~~~~~-g~i~i~~~d~~--~~~  122 (283)
                      ...++++++|.. +|++++|+||||||||||+                     +.+.++..|+ +.+......+.  ...
T Consensus        30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred             CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence            345799999985 5999999999999999998                     7777777776 44432211110  000


Q ss_pred             -HHHHHHhccccCCchHHH---------------------------HHhC-CCCCCChHH--------HHHHHHHHHHHc
Q 023354          123 -DGEFLMRNGALPEERIRA---------------------------VETG-GCPHAAIRE--------DISINLGPLEEL  165 (283)
Q Consensus       123 -~~~~~~~ig~v~q~~~~~---------------------------i~~~-g~~~~~~~~--------~~~~~~~~l~~l  165 (283)
                       ....+..+|+++|....+                           +.+. +........        ........|+.+
T Consensus       110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  189 (670)
T 3ux8_A          110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV  189 (670)
T ss_dssp             -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred             hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence             111123455555532110                           0000 000000000        000112235556


Q ss_pred             ccccc-CCCcccC-CchHHHHHHHHHHhcC-Cc--EEEEe-CCCCCCchh------------hcCCc----------ccc
Q 023354          166 SNLFK-ADLLLCE-SGGDNLAANFSRELAD-YI--IYIID-VSGGDKIPR------------KGGPG----------ITQ  217 (283)
Q Consensus       166 ~~~~~-~d~~i~e-SgGq~q~~~ia~al~~-~~--l~llD-pt~g~~l~~------------~~~~~----------i~~  217 (283)
                      ++.+. .++.+.+ ||||+||++|||+|+. |.  |+|+| ||++.|...            +.+.+          +..
T Consensus       190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~  269 (670)
T 3ux8_A          190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA  269 (670)
T ss_dssp             TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred             CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence            55443 4677777 9999999999999984 55  77777 999976421            11222          256


Q ss_pred             cCEEEEE------cCCcccccCChHHHHh
Q 023354          218 ADLLVIN------KTDLASAIGADLAVME  240 (283)
Q Consensus       218 ad~ivi~------K~g~i~~~g~~~e~~~  240 (283)
                      ||+|+++      +.|++++.|++.+++.
T Consensus       270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~  298 (670)
T 3ux8_A          270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMN  298 (670)
T ss_dssp             CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred             CCEEEEecccccccCCEEEEecCHHHHhc
Confidence            9999999      8999999888877654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.69  E-value=1.5e-17  Score=160.95  Aligned_cols=155  Identities=14%  Similarity=0.020  Sum_probs=96.1

Q ss_pred             CcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEE-----------EEeecCCCCCHHHHHHhcc--ccCCc
Q 023354           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLA-----------AVTNDIFTKEDGEFLMRNG--ALPEE  136 (283)
Q Consensus        71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~-----------i~~~d~~~~~~~~~~~~ig--~v~q~  136 (283)
                      .+.+..+..+|++++|+||||||||||+|+|+|+++|+ |++.           +.+.++............+  ...|.
T Consensus        15 ~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~   94 (538)
T 3ozx_A           15 KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQY   94 (538)
T ss_dssp             EEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSC
T ss_pred             eecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccch
Confidence            45566777889999999999999999999999999997 8762           1111111000000001111  11111


Q ss_pred             hHHHHHhCCCCCCChHHHH------HHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCc
Q 023354          137 RIRAVETGGCPHAAIREDI------SINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKI  207 (283)
Q Consensus       137 ~~~~i~~~g~~~~~~~~~~------~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l  207 (283)
                      ...   ..........+.+      ..+.+.++.++.....++.+.+ ||||+||++||++|+ +|.|+++| ||+++|.
T Consensus        95 ~~~---~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~  171 (538)
T 3ozx_A           95 VEY---ASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV  171 (538)
T ss_dssp             TTG---GGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred             hhh---hhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence            100   0000001111111      1244577788877788888888 999999999999998 58888888 9999764


Q ss_pred             hh---------hc--CCcc-----------cccCEEEEEcCCc
Q 023354          208 PR---------KG--GPGI-----------TQADLLVINKTDL  228 (283)
Q Consensus       208 ~~---------~~--~~~i-----------~~ad~ivi~K~g~  228 (283)
                      ..         +.  +.++           ..||+|++++.+.
T Consensus       172 ~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          172 RERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             HHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            31         11  2221           6799999997543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.68  E-value=3.6e-17  Score=162.38  Aligned_cols=82  Identities=23%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             HHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC-C---cEEEEe-CCCCCCchh------------hcCCc----
Q 023354          158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD-Y---IIYIID-VSGGDKIPR------------KGGPG----  214 (283)
Q Consensus       158 ~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~-~---~l~llD-pt~g~~l~~------------~~~~~----  214 (283)
                      ..+.|..+.+.. ..+..+.+ ||||+||++|||+|+. |   .|+|+| ||++.|...            +.+.+    
T Consensus       523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~v  602 (670)
T 3ux8_A          523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI  602 (670)
T ss_dssp             HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            344566665543 34566666 9999999999999974 4   477777 999976321            11222    


Q ss_pred             ------ccccCEEEEE------cCCcccccCChHHHH
Q 023354          215 ------ITQADLLVIN------KTDLASAIGADLAVM  239 (283)
Q Consensus       215 ------i~~ad~ivi~------K~g~i~~~g~~~e~~  239 (283)
                            +..||+|+++      +.|++++.|++.++.
T Consensus       603 tHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~  639 (670)
T 3ux8_A          603 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA  639 (670)
T ss_dssp             CCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred             eCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence                  2679999999      899999999887764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.62  E-value=7.4e-16  Score=156.97  Aligned_cols=161  Identities=17%  Similarity=0.108  Sum_probs=105.2

Q ss_pred             cCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           59 IYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      +.+..|.  ....+++++|.. +|++++|+|||||||||||++|+|     |.+  .+.+...    .  .+++|++|+.
T Consensus       440 ~ls~~yg--~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~----~--~~~~~v~q~~  504 (986)
T 2iw3_A          440 EFSLAYG--AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQE----E--CRTVYVEHDI  504 (986)
T ss_dssp             EEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTT----T--SCEEETTCCC
T ss_pred             eEEEEEC--CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCcccc----c--eeEEEEcccc
Confidence            3444443  235788899985 599999999999999999999996     222  1111100    0  1246666542


Q ss_pred             ---------HHHHHhCCCCCCChHHHHHHHHHHHHHcccc-ccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          138 ---------IRAVETGGCPHAAIREDISINLGPLEELSNL-FKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       138 ---------~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~-~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                               .+++.. ...  ..   ...+.+.|+.++.. ...++.+.+ ||||+||+.||++++ +|.|+|+| ||++
T Consensus       505 ~~~~~~ltv~e~l~~-~~~--~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~  578 (986)
T 2iw3_A          505 DGTHSDTSVLDFVFE-SGV--GT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNH  578 (986)
T ss_dssp             CCCCTTSBHHHHHHT-TCS--SC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTT
T ss_pred             cccccCCcHHHHHHH-hhc--CH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence                     122222 110  01   23445677777763 455666666 999999999999998 58888888 9999


Q ss_pred             CCchh---------hcCCcc-----------cccCEEEEEcCCccc-ccCChHHHHh
Q 023354          205 DKIPR---------KGGPGI-----------TQADLLVINKTDLAS-AIGADLAVME  240 (283)
Q Consensus       205 ~~l~~---------~~~~~i-----------~~ad~ivi~K~g~i~-~~g~~~e~~~  240 (283)
                      .|...         +.+.++           .+||+|++++.|++. +.|+..+.+.
T Consensus       579 LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          579 LDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             CCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            76431         122221           679999999999986 5677766543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.61  E-value=5.7e-16  Score=142.39  Aligned_cols=189  Identities=18%  Similarity=0.218  Sum_probs=101.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-------HHHHHhccccCCchHHHH-Hh-CCCCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-------GEFLMRNGALPEERIRAV-ET-GGCPHA  149 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-------~~~~~~ig~v~q~~~~~i-~~-~g~~~~  149 (283)
                      ++.+|+|+|+||||||||+|.|++.+.+. +++.+.+.|+.+...       ..+.+..+.   .+..++ .+ .+|.++
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~---~~~~~v~~~~~~~~lg  149 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSR---DMNAYIRPSPTRGTLG  149 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTT---CTTEEEECC-------
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcC---CCCEEEEecCCccccc
Confidence            48899999999999999999999988876 899999999875421       111111110   000000 00 111111


Q ss_pred             ChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcc
Q 023354          150 AIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLA  229 (283)
Q Consensus       150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i  229 (283)
                      ....+   ..+.+..+ ....++.++.++.|..+........++.+++|+|++.+...+......++.++.+++||+|+.
T Consensus       150 g~tr~---~~~~~~~~-~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~  225 (349)
T 2www_A          150 GVTRT---TNEAILLC-EGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGD  225 (349)
T ss_dssp             --CTT---HHHHHHHH-HHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGG
T ss_pred             cchHH---HHHHHHhh-ccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCC
Confidence            00001   11222222 234678888888886543322234567889999988765432111123466889999999986


Q ss_pred             cccCC--hHHHHhHHHHhhcC-----CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          230 SAIGA--DLAVMERDALRMRD-----GGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       230 ~~~g~--~~e~~~~~~~~~~~-----~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ...+.  ..+.+...+....+     ..+++++|+++|.|+++|+++|....+
T Consensus       226 ~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          226 LIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             GHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            43110  01111111111121     357889999999999999999987654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.61  E-value=7.4e-16  Score=156.11  Aligned_cols=83  Identities=24%  Similarity=0.336  Sum_probs=61.1

Q ss_pred             HHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchh------------hcCCc----
Q 023354          158 NLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPR------------KGGPG----  214 (283)
Q Consensus       158 ~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~------------~~~~~----  214 (283)
                      ..+.|+.+++.. ..+..+.+ ||||+||+.||++|+.    +.|+|+| ||+|.|...            ..+.+    
T Consensus       825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi  904 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI  904 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            345677777665 45666666 9999999999999984    4788887 999976421            11222    


Q ss_pred             ------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354          215 ------ITQADLLVIN------KTDLASAIGADLAVME  240 (283)
Q Consensus       215 ------i~~ad~ivi~------K~g~i~~~g~~~e~~~  240 (283)
                            +..||+|+++      +.|++++.|++.+++.
T Consensus       905 sHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~  942 (972)
T 2r6f_A          905 EHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE  942 (972)
T ss_dssp             CCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred             cCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence                  2679999999      7899999888876653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.58  E-value=5.5e-16  Score=156.30  Aligned_cols=84  Identities=20%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             HHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchh------------hcCCc---
Q 023354          157 INLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPR------------KGGPG---  214 (283)
Q Consensus       157 ~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~------------~~~~~---  214 (283)
                      .+.+.|+.+++.. ..+..+.+ ||||+||+.||++|+.    +.|+|+| ||+|.|...            +.+.+   
T Consensus       709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv  788 (842)
T 2vf7_A          709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA  788 (842)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            3456677777665 34666666 9999999999999985    5788888 999976421            11222   


Q ss_pred             -------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354          215 -------ITQADLLVIN------KTDLASAIGADLAVME  240 (283)
Q Consensus       215 -------i~~ad~ivi~------K~g~i~~~g~~~e~~~  240 (283)
                             +..||+|+++      +.|++++.|++.+++.
T Consensus       789 isHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~  827 (842)
T 2vf7_A          789 VEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ  827 (842)
T ss_dssp             ECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred             EcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence                   2679999999      7899998888876543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.57  E-value=2.5e-14  Score=131.59  Aligned_cols=189  Identities=19%  Similarity=0.228  Sum_probs=112.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC---------
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH---------  148 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~---------  148 (283)
                      .+..+|+|+|++|+|||||++.|+..+... .++.++..|+.....      .|.+.++.......+..+.         
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~------~g~~l~d~~~~~~~~~~~~~~i~~~~~~  150 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRT------GGSILGDKTRMARLAVHPNAYIRPSPTS  150 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------------CHHHHTCTTEEEECCC--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcc------cchhccchhhHHhhccCCCeeEEECCCC
Confidence            346799999999999999999999877655 588888888765321      1111111111111110000         


Q ss_pred             CChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCc
Q 023354          149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL  228 (283)
Q Consensus       149 ~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~  228 (283)
                      +..........+.+..+ ....++.+++++.|..+........+|.+++++||+.++.+........+.++.+|+||+|+
T Consensus       151 ~~~~~~~~~t~d~i~~~-~~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl  229 (355)
T 3p32_A          151 GTLGGVTRATRETVVLL-EAAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADG  229 (355)
T ss_dssp             CCHHHHHHHHHHHHHHH-HHTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCG
T ss_pred             ccccchhHHHHHHHHHH-hhCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCC
Confidence            01111112223334322 33567888889777655544444567889999999877655332223456789999999998


Q ss_pred             ccccCChHHHHhHHHHhh---c------CCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          229 ASAIGADLAVMERDALRM---R------DGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       229 i~~~g~~~e~~~~~~~~~---~------~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ....  ..+.....+...   .      ...|++.+||++|.|+++|+++|...++.
T Consensus       230 ~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          230 EHHK--EARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGHH--HHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             cChh--HHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            7442  111122222221   1      14789999999999999999999887654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.55  E-value=1e-15  Score=138.09  Aligned_cols=176  Identities=16%  Similarity=0.141  Sum_probs=100.6

Q ss_pred             ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHH--HHhccccCCchHHHHHhCC
Q 023354           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETGG  145 (283)
Q Consensus        74 ~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~--~~~ig~v~q~~~~~i~~~g  145 (283)
                      .++|. .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+.....    ..+  +..++|++|++.     ..
T Consensus        92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-----~~  166 (302)
T 3b9q_A           92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-----KA  166 (302)
T ss_dssp             SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-------CC
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-----cc
Confidence            45664 459999999999999999999999999887 999999988754321    122  346899988642     01


Q ss_pred             CCCCChHHHHHHHHH------HHHHccccccCCCcccC-CchHHHHHHHHHHhcC-Cc--EEEEeCCCCCCchhhcCCcc
Q 023354          146 CPHAAIREDISINLG------PLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YI--IYIIDVSGGDKIPRKGGPGI  215 (283)
Q Consensus       146 ~~~~~~~~~~~~~~~------~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~--l~llDpt~g~~l~~~~~~~i  215 (283)
                      .+.....+.+.....      .++.+++....+..+.+ |   +||+.+|++++. |.  ++++||+++.+.........
T Consensus       167 ~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~  243 (302)
T 3b9q_A          167 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFN  243 (302)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHH
Confidence            111111111110000      00001111111111222 3   789999999984 87  99999999876543221110


Q ss_pred             --cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          216 --TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       216 --~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                        .-...|+++|.|....-|.......      ..+.|+.++.  +|+.+++
T Consensus       244 ~~~g~t~iiiThlD~~~~~g~~l~~~~------~~~~pi~~i~--~Ge~~~d  287 (302)
T 3b9q_A          244 EVVGITGLILTKLDGSARGGCVVSVVE------ELGIPVKFIG--VGEAVED  287 (302)
T ss_dssp             HHTCCCEEEEECCSSCSCTHHHHHHHH------HHCCCEEEEE--CSSSGGG
T ss_pred             HhcCCCEEEEeCCCCCCccChheehHH------HHCCCEEEEe--CCCChhh
Confidence              1245799999776533222222211      1256777775  4555543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.55  E-value=2.6e-17  Score=140.77  Aligned_cols=109  Identities=18%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHH-HhCCCCCCChH--HH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAV-ETGGCPHAAIR--ED  154 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i-~~~g~~~~~~~--~~  154 (283)
                      .+|++++|+||||||||||+++|+|+ +|+ |+|....  +.. ....+++.+||+||++.+.+ .+.........  ..
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~--~~~-~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~   95 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRII--LTR-PAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVE   95 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEE--EEE-CSCCTTCCCCSSCC------CTTTHHHHHHHTTTSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEE--ecC-CchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhcc
Confidence            56999999999999999999999999 886 8884321  111 11123567999999863222 11000000000  00


Q ss_pred             HHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCCC
Q 023354          155 ISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSGG  204 (283)
Q Consensus       155 ~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~g  204 (283)
                      ...+.+.++.             ..||+||++|||+++ +|.++++| |+++
T Consensus        96 ~~~~~~~l~~-------------glGq~qrv~lAraL~~~p~lllLDEPts~  134 (208)
T 3b85_A           96 PEVIPKLMEA-------------GIVEVAPLAYMRGRTLNDAFVILDEAQNT  134 (208)
T ss_dssp             TTHHHHHHHT-------------TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred             HHHHHHHHHh-------------CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            0011112221             129999999999998 58888888 9988

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.54  E-value=2.4e-15  Score=138.55  Aligned_cols=177  Identities=16%  Similarity=0.152  Sum_probs=102.7

Q ss_pred             ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHH--HHhccccCCchHHHHHhCC
Q 023354           74 SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF--LMRNGALPEERIRAVETGG  145 (283)
Q Consensus        74 ~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~--~~~ig~v~q~~~~~i~~~g  145 (283)
                      .++|. .+|++++|+||||||||||++.|+|+++|+ |+|.+.+.|+.....    ..+  +..+++++|++..     .
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-----~  223 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-----A  223 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-----C
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-----c
Confidence            35554 459999999999999999999999999887 999999988754211    112  3468999886310     0


Q ss_pred             CCCCChHHHHHHHHH------HHHHccccccCCCcccC-CchHHHHHHHHHHhcC-Cc--EEEEeCCCCCCchhhcCCcc
Q 023354          146 CPHAAIREDISINLG------PLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YI--IYIIDVSGGDKIPRKGGPGI  215 (283)
Q Consensus       146 ~~~~~~~~~~~~~~~------~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~--l~llDpt~g~~l~~~~~~~i  215 (283)
                      .+.....+.+.....      .++.+++....+..+.| |   +||+.+|++++. |.  ++++||+++.+.........
T Consensus       224 ~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~  300 (359)
T 2og2_A          224 KAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFN  300 (359)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred             ChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHH
Confidence            111111111110000      00001111111111222 4   789999999984 77  99999999876543211100


Q ss_pred             --cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354          216 --TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       216 --~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l  266 (283)
                        .-...|+++|.|....-|.......      ..+.|+.++.  .|+.+++|
T Consensus       301 ~~~g~t~iiiThlD~~~~gG~~lsi~~------~~~~pI~~ig--~Ge~~~Dl  345 (359)
T 2og2_A          301 EVVGITGLILTKLDGSARGGCVVSVVE------ELGIPVKFIG--VGEAVEDL  345 (359)
T ss_dssp             HHTCCCEEEEESCTTCSCTHHHHHHHH------HHCCCEEEEE--CSSSGGGE
T ss_pred             HhcCCeEEEEecCcccccccHHHHHHH------HhCCCEEEEe--CCCChHhc
Confidence              1246899999876544333322221      1256887776  56666543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.54  E-value=1e-16  Score=144.48  Aligned_cols=152  Identities=11%  Similarity=-0.053  Sum_probs=93.0

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHH-hcc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNG  131 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~-~ig  131 (283)
                      .+.+.++++.|+   .+++++++|..+ |++++|+||||||||||+++|+|++  .|+|..........-...++. +++
T Consensus       101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~  175 (305)
T 2v9p_A          101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAA  175 (305)
T ss_dssp             HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCE
T ss_pred             eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhc
Confidence            366778888876   457888899855 9999999999999999999999998  688743221111000011111 222


Q ss_pred             ccCCchHHHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEeCCCCCCchh
Q 023354          132 ALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDKIPR  209 (283)
Q Consensus       132 ~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llDpt~g~~l~~  209 (283)
                      +.++             ..  .   .+.+.+..+ +...++  ... |+||+||   ||+++ +|.|+|   |++.|...
T Consensus       176 ~~~~-------------~~--~---~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl---Ts~LD~~~  228 (305)
T 2v9p_A          176 LVDD-------------AT--H---ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV---TSNIDVQA  228 (305)
T ss_dssp             EEEE-------------EC--H---HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE---EESSCSTT
T ss_pred             cCcc-------------cc--H---HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---ECCCCHHH
Confidence            2110             00  1   112333432 222333  233 9999999   88888 477777   55544322


Q ss_pred             hc--------CCcccccCEEEEEcCCcccccCChHHH
Q 023354          210 KG--------GPGITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       210 ~~--------~~~i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      +.        ...+..||+| +++.|++++.|+..+.
T Consensus       229 ~~~i~~ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el  264 (305)
T 2v9p_A          229 EDRYLYLHSRVQTFRFEQPC-TDESGEQPFNITDADW  264 (305)
T ss_dssp             CGGGGGGTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence            11        1235789999 9999999999988776

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.51  E-value=4.6e-17  Score=144.66  Aligned_cols=139  Identities=17%  Similarity=0.057  Sum_probs=73.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHH-----HHHhCCCCCCCh-HHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR-----AVETGGCPHAAI-RED  154 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~-----~i~~~g~~~~~~-~~~  154 (283)
                      ..++|+||||||||||+|+|+|+..|+ |++.+.+.++...   ..++.+++++|+...     ++++.++..... ...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~   79 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC   79 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence            479999999999999999999999987 9999888766432   123578999997531     122222211100 000


Q ss_pred             HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcCCcEEEEeCC-CCCCchh-----hcCCcccccCEEEEEcCC
Q 023354          155 ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVS-GGDKIPR-----KGGPGITQADLLVINKTD  227 (283)
Q Consensus       155 ~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~~~l~llDpt-~g~~l~~-----~~~~~i~~ad~ivi~K~g  227 (283)
                      ...+.+.+.    ....+....+ |+||+||+.+||+++  .++++||+ .+.+...     ....  ...-++|++|.|
T Consensus        80 ~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~--~lllldep~~gL~~lD~~~l~~L~~--~~~vI~Vi~K~D  151 (270)
T 3sop_A           80 WEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHC--CLYFISPTGHSLRPLDLEFMKHLSK--VVNIIPVIAKAD  151 (270)
T ss_dssp             SHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCE--EEEEECCCSSSCCHHHHHHHHHHHT--TSEEEEEETTGG
T ss_pred             HHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeee--eeEEEecCCCcCCHHHHHHHHHHHh--cCcEEEEEeccc
Confidence            001111111    1111222333 999999999998765  48888854 6654221     1111  134578899999


Q ss_pred             cccc
Q 023354          228 LASA  231 (283)
Q Consensus       228 ~i~~  231 (283)
                      .+..
T Consensus       152 ~lt~  155 (270)
T 3sop_A          152 TMTL  155 (270)
T ss_dssp             GSCH
T ss_pred             cCCH
Confidence            8865

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.51  E-value=8.1e-14  Score=141.61  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=61.9

Q ss_pred             HHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC----CcEEEEe-CCCCCCchh------------hcCCc---
Q 023354          157 INLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD----YIIYIID-VSGGDKIPR------------KGGPG---  214 (283)
Q Consensus       157 ~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~----~~l~llD-pt~g~~l~~------------~~~~~---  214 (283)
                      ...+.|+.+++.+. .+....+ ||||+||+.||++|+.    +.|+|+| ||+|++...            ..+.+   
T Consensus       784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv  863 (916)
T 3pih_A          784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV  863 (916)
T ss_dssp             HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            34556777776542 4555656 9999999999999984    4588887 999976421            11222   


Q ss_pred             -------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354          215 -------ITQADLLVIN------KTDLASAIGADLAVME  240 (283)
Q Consensus       215 -------i~~ad~ivi~------K~g~i~~~g~~~e~~~  240 (283)
                             +..||+|+++      +.|++++.|++.+++.
T Consensus       864 I~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~  902 (916)
T 3pih_A          864 IEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK  902 (916)
T ss_dssp             ECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred             EeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence                   2679999999      9999999999988764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.50  E-value=7.4e-14  Score=125.95  Aligned_cols=164  Identities=13%  Similarity=0.126  Sum_probs=100.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HH-----HHHhccccCCchHHHHHhCCCCCCChH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GE-----FLMRNGALPEERIRAVETGGCPHAAIR  152 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~-----~~~~ig~v~q~~~~~i~~~g~~~~~~~  152 (283)
                      +|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+..... .+     .+..+++++|...      ..+.....
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~------~~p~~~v~  174 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG------TDSAALAY  174 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT------CCHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC------CCHHHHHH
Confidence            68999999999999999999999999987 999999998765331 11     1346899998642      11111111


Q ss_pred             HHHHHHHHHHHHccccccCCCcccC------------CchHHHHHHHHHHhcC-Cc--EEEEeCCCCCCchhhcCCcc--
Q 023354          153 EDISINLGPLEELSNLFKADLLLCE------------SGGDNLAANFSRELAD-YI--IYIIDVSGGDKIPRKGGPGI--  215 (283)
Q Consensus       153 ~~~~~~~~~l~~l~~~~~~d~~i~e------------SgGq~q~~~ia~al~~-~~--l~llDpt~g~~l~~~~~~~i--  215 (283)
                      +.+..   ...     ..++..+.+            +...+||+.+||+++. |.  ++++||+++.+.........  
T Consensus       175 ~~v~~---~~~-----~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~  246 (304)
T 1rj9_A          175 DAVQA---MKA-----RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEA  246 (304)
T ss_dssp             HHHHH---HHH-----HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHH
T ss_pred             HHHHH---HHh-----CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHH
Confidence            11110   110     011221211            3345789999999985 54  78899998865432211000  


Q ss_pred             cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       216 ~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      .-...|+++|.+....-|....+...      .+.|+.++.  .|+++++
T Consensus       247 ~~~t~iivTh~d~~a~gg~~l~i~~~------~~~pi~~ig--~Ge~~~d  288 (304)
T 1rj9_A          247 VGLTGVIVTKLDGTAKGGVLIPIVRT------LKVPIKFVG--VGEGPDD  288 (304)
T ss_dssp             HCCSEEEEECTTSSCCCTTHHHHHHH------HCCCEEEEE--CSSSTTC
T ss_pred             cCCcEEEEECCcccccccHHHHHHHH------HCCCeEEEe--CCCChhh
Confidence            12468999999876544443322211      357888876  5666554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.5e-16  Score=151.26  Aligned_cols=152  Identities=16%  Similarity=-0.031  Sum_probs=92.7

Q ss_pred             cccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-C-c-EEEEeecCCCCCHHHHHHhccccCCchHH--------HH
Q 023354           74 SRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-S-LAAVTNDIFTKEDGEFLMRNGALPEERIR--------AV  141 (283)
Q Consensus        74 ~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g-~-i~i~~~d~~~~~~~~~~~~ig~v~q~~~~--------~i  141 (283)
                      +++|.. +|++++|+||||||||||+|+|+|++.|+ | + |.+++ ++        ++.++++||....        ..
T Consensus       130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~--------~~~i~~vpq~~~l~~~~~~~tv~  200 (460)
T 2npi_A          130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DP--------QQPIFTVPGCISATPISDILDAQ  200 (460)
T ss_dssp             HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CT--------TSCSSSCSSCCEEEECCSCCCTT
T ss_pred             cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-Cc--------cCCeeeeccchhhcccccccchh
Confidence            355554 59999999999999999999999999987 8 8 88776 21        3578999997521        00


Q ss_pred             --HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHH--hc-CCcE----EEEe--CCCCCCch-
Q 023354          142 --ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRE--LA-DYII----YIID--VSGGDKIP-  208 (283)
Q Consensus       142 --~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~a--l~-~~~l----~llD--pt~g~~l~-  208 (283)
                        .++....... .....+...++.++.....+  ..+ |+||+||+++|++  |+ +|.+    +|+|  |++++|.. 
T Consensus       201 eni~~~~~~~~~-~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~  277 (460)
T 2npi_A          201 LPTWGQSLTSGA-TLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENL  277 (460)
T ss_dssp             CTTCSCBCBSSC-CSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSC
T ss_pred             hhhcccccccCc-chHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhH
Confidence              0111100000 00000111222333222222  223 9999999999999  87 5555    5555  67765432 


Q ss_pred             -------hhcCCc-----------------ccccCE-----EEEEc-CCcccccCChHHH
Q 023354          209 -------RKGGPG-----------------ITQADL-----LVINK-TDLASAIGADLAV  238 (283)
Q Consensus       209 -------~~~~~~-----------------i~~ad~-----ivi~K-~g~i~~~g~~~e~  238 (283)
                             .+.+.+                 ..+||+     |++++ .|+++ .+++.+.
T Consensus       278 ~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~  336 (460)
T 2npi_A          278 AELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK  336 (460)
T ss_dssp             HHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred             HHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence                   111111                 146787     88887 89988 7776554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.48  E-value=3e-14  Score=130.39  Aligned_cols=198  Identities=17%  Similarity=0.182  Sum_probs=108.1

Q ss_pred             ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH-HHHHHhccccCCchHHHHHhCCCCC
Q 023354           72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED-GEFLMRNGALPEERIRAVETGGCPH  148 (283)
Q Consensus        72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~i~~~g~~~  148 (283)
                      +.++++. .++.+++|+|+||||||||++.|++.+.+. +++.+++.++.+... ..+......+.+  . .....++.+
T Consensus        46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~--~-~~~~~~~i~  122 (341)
T 2p67_A           46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMND--L-ARAEAAFIR  122 (341)
T ss_dssp             HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CT--T-TTCTTEEEE
T ss_pred             HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHh--h-ccCCCceee
Confidence            3444554 458999999999999999999999998866 789999998875421 111000000000  0 000001111


Q ss_pred             CCh-----HHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEE
Q 023354          149 AAI-----REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVI  223 (283)
Q Consensus       149 ~~~-----~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi  223 (283)
                      +..     ........+.+..+ ....++..++++.|..+........+|.+++++|++.+..+..........+..+++
T Consensus       123 ~~~~~~~l~g~~~~~~~~~~~~-~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~  201 (341)
T 2p67_A          123 PVPSSGHLGGASQRARELMLLC-EAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVI  201 (341)
T ss_dssp             EECC-----CHHHHHHHHHHHH-HHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEE
T ss_pred             cCccccccchhHHHHHHHHHHh-hccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEE
Confidence            000     00111122222221 134678888888885544444445668899999998765432111011245789999


Q ss_pred             EcCCcccccCChHHHHhHHHH---hh-cC-----CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          224 NKTDLASAIGADLAVMERDAL---RM-RD-----GGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       224 ~K~g~i~~~g~~~e~~~~~~~---~~-~~-----~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ||.|+....  ......+.+.   .. .+     ..+++++|+++|.|+++++++|.....
T Consensus       202 NK~Dl~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          202 NKDDGDNHT--NVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CCCCTTCHH--HHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ECCCCCChH--HHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            999986431  1111111121   12 21     356889999999999999999987654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.45  E-value=3.4e-14  Score=121.02  Aligned_cols=186  Identities=29%  Similarity=0.386  Sum_probs=111.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINL  159 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~  159 (283)
                      +..+++|+|++|||||||++.|++......++.++..++....+....+..+.    ....+..++. ++.......   
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~---  100 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGI----KAEAISTGKE-CHLDAHMIY---  100 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTC----EEEECCCTTC-SSCCHHHHH---
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCC----cEEEecCCce-eecccHHHH---
Confidence            45689999999999999999999876444577777777754323222222121    0011222222 222111111   


Q ss_pred             HHHHHccccccCCCcccCCchH-HHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHH
Q 023354          160 GPLEELSNLFKADLLLCESGGD-NLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAV  238 (283)
Q Consensus       160 ~~l~~l~~~~~~d~~i~eSgGq-~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~  238 (283)
                      +.+.   ....++.+++|+.|+ ..+..+.. -.+..++++|++.+..........+..+..+++||+|+........+.
T Consensus       101 ~~~~---~~~~~d~iiidt~G~~~~~~~~~~-~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~  176 (221)
T 2wsm_A          101 HRLK---KFSDCDLLLIENVGNLICPVDFDL-GENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEK  176 (221)
T ss_dssp             TTGG---GGTTCSEEEEEEEEBSSGGGGCCC-SCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHH
T ss_pred             HHHH---hcCCCCEEEEeCCCCCCCCchhcc-ccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHH
Confidence            1111   234578888887774 10000000 123678999987765332222223456789999999987542234455


Q ss_pred             HhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          239 MERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       239 ~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      +.+.+....+..+++.+|+++|.|+++++++|...+..+
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            555555556678899999999999999999998876544

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.43  E-value=2.9e-15  Score=140.29  Aligned_cols=168  Identities=10%  Similarity=0.036  Sum_probs=99.8

Q ss_pred             CcccccccC-CCc--------------------EEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354           71 PILSRNFNE-RAF--------------------TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        71 ~~~~~~~~~-~g~--------------------~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~  128 (283)
                      ++++++|.. +|+                    +++|+||||||||||+|+|+|+++|+ |.|.+.+.+..         
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---------  108 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---------  108 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------------
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---------
Confidence            577788864 488                    99999999999999999999999987 98877664431         


Q ss_pred             hccccCCchH----HHHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCch--HHHHHHHHHHhcC---------
Q 023354          129 RNGALPEERI----RAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGG--DNLAANFSRELAD---------  193 (283)
Q Consensus       129 ~ig~v~q~~~----~~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgG--q~q~~~ia~al~~---------  193 (283)
                      +.++++|.+.    .+.++.++....     ..+.+.++.+..... +..+.-|+|  |+|++.+|++++.         
T Consensus       109 ~~~~v~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~~L~~~-~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~  182 (413)
T 1tq4_A          109 MERHPYKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKMKFYEY-DFFIIISATRFKKNDIDIAKAISMMKKEFYFVR  182 (413)
T ss_dssp             CCCEEEECSSCTTEEEEECCCGGGSS-----CCHHHHHHHTTGGGC-SEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eeEEeccccccCCeeehHhhcccchH-----HHHHHHHHHcCCCcc-CCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence            1266776531    111222221110     123345666654433 332335888  9999999999864         


Q ss_pred             --CcEEEEe-CCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHHHhHHH----Hhh-cCCCCeEEEEe--ccCCCH
Q 023354          194 --YIIYIID-VSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDA----LRM-RDGGPFIFAQV--KHGLGV  263 (283)
Q Consensus       194 --~~l~llD-pt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~----~~~-~~~~~i~~isa--~~g~gi  263 (283)
                        +.++++| |+++.|...+.                      ...+.+.+..    .+. .....++.+|+  ..+.|+
T Consensus       183 tkpdlllLDEPtsgLD~~~~~----------------------~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~  240 (413)
T 1tq4_A          183 TKVDSDITNEADGEPQTFDKE----------------------KVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF  240 (413)
T ss_dssp             CCHHHHHHHHHTTCCTTCCHH----------------------HHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH
T ss_pred             ecCcccccCcccccCCHHHHH----------------------HHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH
Confidence              2233344 66665543211                      0111122111    121 23346788888  666679


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      +++.+.+...++
T Consensus       241 e~L~d~I~~~Lp  252 (413)
T 1tq4_A          241 PVLMDKLISDLP  252 (413)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCc
Confidence            999888876653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.40  E-value=3.2e-14  Score=128.75  Aligned_cols=135  Identities=16%  Similarity=0.069  Sum_probs=81.7

Q ss_pred             cCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C--cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHH
Q 023354           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED  154 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g--~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~  154 (283)
                      ..+|++++|+||||||||||+++|+|+++|. |  .+.++..+..-... ..+..+++..        .-+.+...   +
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~-t~~e~~~~~~--------~~g~~~~~---d  154 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPN-AELQRRNLMH--------RKGFPESY---N  154 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCH-HHHHHTTCTT--------CTTSGGGB---C
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcc-cHHHHHHHHH--------hcCCChHH---H
Confidence            3569999999999999999999999999875 4  45555544332222 2223332210        01222211   1


Q ss_pred             HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchhhcCCcccccCEEEEEcCC
Q 023354          155 ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPRKGGPGITQADLLVINKTD  227 (283)
Q Consensus       155 ~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~~~~~~i~~ad~ivi~K~g  227 (283)
                      ...+.+.|+.+. ....+..+.+ |+||+||+.+|++++ ++.|+|+| |+...+...  .......|..|+...+
T Consensus       155 ~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--~~l~~~~D~~I~V~a~  227 (312)
T 3aez_A          155 RRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--LMVSDLFDFSLYVDAR  227 (312)
T ss_dssp             HHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--CCGGGGCSEEEEEEEC
T ss_pred             HHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--HHHHHhcCcEEEEECC
Confidence            223345566654 2333344445 999999999998887 48888888 777643211  1122456777776554

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.40  E-value=9.6e-14  Score=129.66  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=29.6

Q ss_pred             CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+.+++|.-. | +++|+|+|||||||||++|++++.
T Consensus        50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            5667777755 7 999999999999999999977664

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.38  E-value=5.8e-13  Score=126.69  Aligned_cols=171  Identities=16%  Similarity=0.188  Sum_probs=100.8

Q ss_pred             ccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC------HHHHHHhccccCCchHHHHHhC
Q 023354           73 LSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE------DGEFLMRNGALPEERIRAVETG  144 (283)
Q Consensus        73 ~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~------~~~~~~~ig~v~q~~~~~i~~~  144 (283)
                      .+++|.. +|++++|+|+||||||||+++|+|+++++ |+|.+.+.+.....      ....++.++|++|...      
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~------  357 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG------  357 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT------
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC------
Confidence            3556654 59999999999999999999999999887 89999888765421      1113556899988631      


Q ss_pred             CCCCCChHHHHHHHHHHHHHccccccCCCcccCCchH-----------HHHHHHHHHhc--C--CcEEEEeCCCCCCchh
Q 023354          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCESGGD-----------NLAANFSRELA--D--YIIYIIDVSGGDKIPR  209 (283)
Q Consensus       145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq-----------~q~~~ia~al~--~--~~l~llDpt~g~~l~~  209 (283)
                      ..+...       +.+.+... ....+|.+++++.|.           .+++.+++++.  .  .+++++|+++|.+...
T Consensus       358 ~~p~~t-------V~e~l~~a-~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~  429 (503)
T 2yhs_A          358 ADSASV-------IFDAIQAA-KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS  429 (503)
T ss_dssp             CCHHHH-------HHHHHHHH-HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH
T ss_pred             cCHHHH-------HHHHHHHH-HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH
Confidence            111011       11112111 224567777775542           23444555442  1  3588999998843221


Q ss_pred             ---hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354          210 ---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       210 ---~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l  266 (283)
                         .+...+ -.+.+|++|.|....-|....++.      ..+.|+.++.  +|+++++|
T Consensus       430 ~ak~f~~~~-~itgvIlTKLD~takgG~~lsi~~------~~~~PI~fig--~Ge~vdDL  480 (503)
T 2yhs_A          430 QAKLFHEAV-GLTGITLTKLDGTAKGGVIFSVAD------QFGIPIRYIG--VGERIEDL  480 (503)
T ss_dssp             HHHHHHHHT-CCSEEEEECGGGCSCCTHHHHHHH------HHCCCEEEEE--CSSSGGGE
T ss_pred             HHHHHHhhc-CCCEEEEEcCCCcccccHHHHHHH------HHCCCEEEEe--cCCChhhc
Confidence               111111 135799999886433333222221      1257888765  67777543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.36  E-value=1.2e-12  Score=119.27  Aligned_cols=166  Identities=21%  Similarity=0.377  Sum_probs=98.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH----HHHhcc--ccCCchHHHHHhCCCCCCCh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE----FLMRNG--ALPEERIRAVETGGCPHAAI  151 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~----~~~~ig--~v~q~~~~~i~~~g~~~~~~  151 (283)
                      .+|++++|+||||||||||+++|+|+++|+ |+|.+.+.|+......+    +++++|  +++|..      +..+....
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~------~~~p~~~v  200 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY------GADPAAVA  200 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT------TCCHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc------cCCHHHHH
Confidence            469999999999999999999999999987 89999999987654332    234455  566542      11111111


Q ss_pred             HHHHHHHHHHHHHccccccCCCcccCCch--------HHHHHHHHHHhc-CCcEEEEeCCCCCCchhhcCCc--ccccCE
Q 023354          152 REDISINLGPLEELSNLFKADLLLCESGG--------DNLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPG--ITQADL  220 (283)
Q Consensus       152 ~~~~~~~~~~l~~l~~~~~~d~~i~eSgG--------q~q~~~ia~al~-~~~l~llDpt~g~~l~~~~~~~--i~~ad~  220 (283)
                      .+.       +.. .....++.++.++.|        ..+...+++++. ++.++++|++++.+........  ..-.+.
T Consensus       201 ~e~-------l~~-~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~  272 (328)
T 3e70_C          201 YDA-------IQH-AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDG  272 (328)
T ss_dssp             HHH-------HHH-HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCE
T ss_pred             HHH-------HHH-HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCE
Confidence            111       111 111234444444222        123344667766 6889999988876443221100  012468


Q ss_pred             EEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354          221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       221 ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l  266 (283)
                      |+++|.|.-...|......    .  ..+.|+.+++  +|++++++
T Consensus       273 iilTKlD~~a~~G~~l~~~----~--~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          273 IILTKLDADARGGAALSIS----Y--VIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             EEEECGGGCSCCHHHHHHH----H--HHTCCEEEEE--CSSSTTCE
T ss_pred             EEEeCcCCccchhHHHHHH----H--HHCCCEEEEe--CCCCcccc
Confidence            9999988743323222111    1  1367898887  77777543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.36  E-value=9.2e-14  Score=114.72  Aligned_cols=113  Identities=12%  Similarity=0.084  Sum_probs=63.4

Q ss_pred             cccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHH
Q 023354           75 RNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRE  153 (283)
Q Consensus        75 ~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~  153 (283)
                      ++|. .+|++++|+||||||||||++++.+-     ...+ ..       ..+   .|+++|++...... +    ...+
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~-----~~~~-~~-------d~~---~g~~~~~~~~~~~~-~----~~~~   60 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKP-----TEVI-SS-------DFC---RGLMSDDENDQTVT-G----AAFD   60 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHSCG-----GGEE-EH-------HHH---HHHHCSSTTCGGGH-H----HHHH
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHccC-----CeEE-cc-------HHH---HHHhcCcccchhhH-H----HHHH
Confidence            4555 46999999999999999999986542     1111 11       111   25566653110000 0    0011


Q ss_pred             HHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcC-CcEEEEe-CCCCCCch
Q 023354          154 DISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELAD-YIIYIID-VSGGDKIP  208 (283)
Q Consensus       154 ~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~  208 (283)
                      ............+.....+.....|+|++||+++|++++. |.++++| |+++.+..
T Consensus        61 ~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~  117 (171)
T 4gp7_A           61 VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER  117 (171)
T ss_dssp             HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence            1111111111222222223333349999999999999984 8888888 88876544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.35  E-value=2.5e-13  Score=113.13  Aligned_cols=105  Identities=18%  Similarity=0.009  Sum_probs=60.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHHH
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPL  162 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~l  162 (283)
                      +++|+||||||||||+++|+|++.    +.+.+.+..........+.+||++|+..      +.... .. .       +
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~~-~-------~   62 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-FS-S-------K   62 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETT------CCEEE-EE-E-------T
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-HH-h-------h
Confidence            689999999999999999999885    3333333211111134567899988641      10000 00 0       0


Q ss_pred             HHccccccCCCcccC-CchHHHHHHHHHH-----hc-CCcEEEEe---CCCCCCc
Q 023354          163 EELSNLFKADLLLCE-SGGDNLAANFSRE-----LA-DYIIYIID---VSGGDKI  207 (283)
Q Consensus       163 ~~l~~~~~~d~~i~e-SgGq~q~~~ia~a-----l~-~~~l~llD---pt~g~~l  207 (283)
                       .+......+..+.+ |+||+||+++|++     ++ +|.++++|   |+++.+.
T Consensus        63 -~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~  116 (178)
T 1ye8_A           63 -FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSK  116 (178)
T ss_dssp             -TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCH
T ss_pred             -cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCH
Confidence             00000122334444 9999999999996     66 57666666   6776653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.34  E-value=7.1e-13  Score=113.17  Aligned_cols=185  Identities=32%  Similarity=0.452  Sum_probs=108.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHh-CCCCCCChHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVET-GGCPHAAIREDISIN  158 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~-~g~~~~~~~~~~~~~  158 (283)
                      +..+++|+|++|||||||++.++........+.+++.++....+.......+.    .  .+.. .++.++....+.   
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~----~--~~~~~~~~~~~l~~~~~---  107 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGA----K--VVPLNTGKECHLDAHLV---  107 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTC----E--EEEEECTTCSSCCHHHH---
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCC----c--EEEecCCceEeccHHHH---
Confidence            45789999999999999999999875544567777777753223222222111    0  1111 133333222222   


Q ss_pred             HHHHHHccccccCCCcccCCchH-HHHHHHHHHhc-CCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChH
Q 023354          159 LGPLEELSNLFKADLLLCESGGD-NLAANFSRELA-DYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADL  236 (283)
Q Consensus       159 ~~~l~~l~~~~~~d~~i~eSgGq-~q~~~ia~al~-~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~  236 (283)
                      .+.+..+. ...++.++.++.|. ..+..+  ... ...+.++|+..+...+......+..++.+++||+|+........
T Consensus       108 ~~~~~~l~-~~~~d~~~id~~g~i~~~~s~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~  184 (226)
T 2hf9_A          108 GHALEDLN-LDEIDLLFIENVGNLICPADF--DLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADI  184 (226)
T ss_dssp             HHHHTTSC-GGGCSEEEEECCSCSSGGGGC--CCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTCCH
T ss_pred             HHHHHHHh-cCCCCEEEEeCCCCccCcchh--hhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHHHH
Confidence            23333332 33567777776552 000000  011 23466777544433332222235678899999999875422234


Q ss_pred             HHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          237 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       237 e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      +.+.+.+....+..+++.+|+++|.|++++++++...+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            4444555555567889999999999999999999876653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.34  E-value=4.7e-14  Score=127.02  Aligned_cols=186  Identities=18%  Similarity=0.112  Sum_probs=77.7

Q ss_pred             CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhc-ccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-----HHHH
Q 023354           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKF-LRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-----RAVE  142 (283)
Q Consensus        70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~-~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-----~~i~  142 (283)
                      .++++.+|     .++|+|+||||||||+++|+|. +.|+ | +.+.+.++....   ..+.+++++|...     .+++
T Consensus        12 ~~l~~~~~-----~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~---~~~~~~~~~q~~~~~~~ltv~D   82 (301)
T 2qnr_A           12 SVKKGFEF-----TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV---QIEASTVEIEERGVKLRLTVVD   82 (301)
T ss_dssp             ------CE-----EEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEE
T ss_pred             EEEcCCCE-----EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc---eEeeEEEEecCCCcccCcchhh
Confidence            35555554     5699999999999999999997 6665 6 665554443211   1245677776432     2233


Q ss_pred             hCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcCCcEEEEeCCCC-CCchhh-cCCcc--c
Q 023354          143 TGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSGG-DKIPRK-GGPGI--T  216 (283)
Q Consensus       143 ~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~~~l~llDpt~g-~~l~~~-~~~~i--~  216 (283)
                      +.|...... .+........+..     ..+..+.+ |+|++|++.+|++++  ++++++|+.+ .+.... ....+  .
T Consensus        83 t~g~~~~~~~~e~~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~--ll~ldePt~~~Ld~~~~~~l~~l~~~  155 (301)
T 2qnr_A           83 TPGYGDAINCRDCFKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC--CFYFISPFGHGLKPLDVAFMKAIHNK  155 (301)
T ss_dssp             EC-----------CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE--EEEEECSSSSSCCHHHHHHHHHHTTT
T ss_pred             hhhhhhhcCcHHHHHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh--eeeeecCcccCCCHHHHHHHHHHHhc
Confidence            333311000 0000111111111     11222333 999999887776654  5556668763 443221 00000  1


Q ss_pred             ccCEEEEEcCCcccccCChHHHHhHHHHh--hcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          217 QADLLVINKTDLASAIGADLAVMERDALR--MRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~--~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ..-.+|++|.|.+..  .....+.+.+.+  ...+.+++.+|++++ ++++++.++....
T Consensus       156 ~~iilV~~K~Dl~~~--~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          156 VNIVPVIAKADTLTL--KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             SCEEEEECCGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred             CCEEEEEEeCCCCCH--HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence            234789999998643  112222222211  123578999999999 9999988887655

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.28  E-value=3.2e-13  Score=115.84  Aligned_cols=67  Identities=15%  Similarity=0.049  Sum_probs=44.7

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCH-HHHHHhccccCCchHHH
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRA  140 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~  140 (283)
                      .+++++|.. +|++++|+||||||||||+++|+|++ | |.+.+ +.++.+..+ ...+..++|++|++..+
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~   80 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIF   80 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHH
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-CcEEE-eecccCCCCCcccccCCeEEECCHHHH
Confidence            567888875 49999999999999999999999988 6 88888 665543221 12345789999987544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.27  E-value=4.8e-13  Score=121.99  Aligned_cols=88  Identities=14%  Similarity=0.087  Sum_probs=63.7

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH  148 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~  148 (283)
                      .+..+++.. +|++++|+||||||||||+++|+|+++|+ |.|.+.+.+......  .++.+++++              
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~--~~~~i~~~~--------------  223 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKH--HKNYTQLFF--------------  223 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSS--CSSEEEEEC--------------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccccc--chhEEEEEe--------------
Confidence            456677764 49999999999999999999999999987 888887643211100  001111110              


Q ss_pred             CChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          149 AAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       149 ~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                                                   .+||+|++.++++|. +|.++++| |++
T Consensus       224 -----------------------------ggg~~~r~~la~aL~~~p~ilildE~~~  251 (330)
T 2pt7_A          224 -----------------------------GGNITSADCLKSCLRMRPDRIILGELRS  251 (330)
T ss_dssp             -----------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred             -----------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence                                         178999999999998 58888887 766

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.23  E-value=1.8e-12  Score=117.55  Aligned_cols=159  Identities=19%  Similarity=0.207  Sum_probs=95.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc--------cCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL--------RDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA  150 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~--------~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~  150 (283)
                      +-++++|+|+||||||||||.|+|+.        .++ |.|.+++..+.....       .+       ....+||.||+
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~-------~~-------~el~~gCicc~   68 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRAT-------QI-------KTLTNGCICCS   68 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSC-------EE-------EEETTSCEEEC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCC-------CE-------EEECCCceEEc
Confidence            35789999999999999999999986        445 666666655532111       00       11257999998


Q ss_pred             hHHHHHHHHHHH-HHccccc-cCCCcccCCchHHHHHHHHHH-----------hcCCcEEEEeCCCCCCchh---hcCCc
Q 023354          151 IREDISINLGPL-EELSNLF-KADLLLCESGGDNLAANFSRE-----------LADYIIYIIDVSGGDKIPR---KGGPG  214 (283)
Q Consensus       151 ~~~~~~~~~~~l-~~l~~~~-~~d~~i~eSgGq~q~~~ia~a-----------l~~~~l~llDpt~g~~l~~---~~~~~  214 (283)
                      .+.++......+ ..+.... .++..+.|+.|......+++.           -++..+.++|.....+...   ....+
T Consensus        69 ~~~~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q  148 (318)
T 1nij_A           69 RSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQ  148 (318)
T ss_dssp             TTSCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHH
T ss_pred             ccHHHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHH
Confidence            766554333222 1111111 358888885553211111111           1245677888765422111   11234


Q ss_pred             ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEE
Q 023354          215 ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQ  256 (283)
Q Consensus       215 i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~is  256 (283)
                      ...||+++++|.+.+.+   + +.+.+.+...++++.++.+|
T Consensus       149 ~~~ad~ill~k~dl~de---~-~~l~~~l~~l~~~~~ii~~s  186 (318)
T 1nij_A          149 VGYADRILLTKTDVAGE---A-EKLHERLARINARAPVYTVT  186 (318)
T ss_dssp             HHTCSEEEEECTTTCSC---T-HHHHHHHHHHCSSSCEEECC
T ss_pred             HHhCCEEEEECcccCCH---H-HHHHHHHHHhCCCCeEEEec
Confidence            56899999999998844   2 55556666677777777665

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.23  E-value=1.7e-12  Score=121.82  Aligned_cols=207  Identities=14%  Similarity=0.154  Sum_probs=106.1

Q ss_pred             CccceeeecCCCCcccCCCCCCCccccccCCCC-----CCCCCCC-CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHh
Q 023354           31 DSTATSWVGSDGRVYHSHDGLAPHSHEPIYSPG-----YFSRRAP-PILSRNFNER-AFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      ...+.-+..+..+......+..|.....+.+..     +....++ ...++++.-+ ++.++|+|+|||||||||++|++
T Consensus       100 ~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg  179 (416)
T 1udx_A          100 GELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTR  179 (416)
T ss_dssp             CCEEEEECSTTCEEEEECCCCCCCCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred             CcEEeeccCCCceEEEecCCCCCcccceeecccccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            345666777777777777776555443333322     1111112 2345666644 89999999999999999999999


Q ss_pred             cccCCCcEEEEeecCCCCCHHHHHHhccccCCch---HHHHHhCCCCCC-----ChHHHHHHHHHHHHHcc-ccccC---
Q 023354          104 FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER---IRAVETGGCPHA-----AIREDISINLGPLEELS-NLFKA---  171 (283)
Q Consensus       104 ~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~---~~~i~~~g~~~~-----~~~~~~~~~~~~l~~l~-~~~~~---  171 (283)
                      ..+     .+.+.++.+..     ..+|++++..   ..+.++.+....     .+...+   ...++... .....   
T Consensus       180 ~~~-----~i~~~~ftTl~-----p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~f---l~~~era~~lL~vvDls  246 (416)
T 1udx_A          180 AHP-----KIAPYPFTTLS-----PNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEF---LRHIARTRVLLYVLDAA  246 (416)
T ss_dssp             SCC-----EECCCTTCSSC-----CEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHH---HHHHTSSSEEEEEEETT
T ss_pred             CCc-----cccCcccceec-----ceeeEEEecCcceEEEEeccccccchhhhhhhhHHH---HHHHHHHHhhhEEeCCc
Confidence            732     12222222221     1344444321   112233332110     000000   00000000 00000   


Q ss_pred             CCcccC-CchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC
Q 023354          172 DLLLCE-SGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGG  250 (283)
Q Consensus       172 d~~i~e-SgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~  250 (283)
                      +.++.+ |.|++|++.++++++                       ..+..+++||.|....  ...+.+.+.+.  ..+.
T Consensus       247 ~~~~~~ls~g~~el~~la~aL~-----------------------~~P~ILVlNKlDl~~~--~~~~~l~~~l~--~~g~  299 (416)
T 1udx_A          247 DEPLKTLETLRKEVGAYDPALL-----------------------RRPSLVALNKVDLLEE--EAVKALADALA--REGL  299 (416)
T ss_dssp             SCHHHHHHHHHHHHHHHCHHHH-----------------------HSCEEEEEECCTTSCH--HHHHHHHHHHH--TTTS
T ss_pred             cCCHHHHHHHHHHHHHHhHHhh-----------------------cCCEEEEEECCChhhH--HHHHHHHHHHH--hcCC
Confidence            111111 455555555544433                       2334666688886543  12222222221  1356


Q ss_pred             CeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          251 PFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       251 ~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      +++.+||+++.|+++++++|.+.+...
T Consensus       300 ~vi~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          300 AVLPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             eEEEEECCCccCHHHHHHHHHHHHHhc
Confidence            899999999999999999999887643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.22  E-value=3.1e-11  Score=111.40  Aligned_cols=59  Identities=14%  Similarity=0.004  Sum_probs=42.6

Q ss_pred             CcccC-CchHHHHHHHHHHhc-------CCcEEEEe-CCCCCCchhh------------cCCc----------ccccCEE
Q 023354          173 LLLCE-SGGDNLAANFSRELA-------DYIIYIID-VSGGDKIPRK------------GGPG----------ITQADLL  221 (283)
Q Consensus       173 ~~i~e-SgGq~q~~~ia~al~-------~~~l~llD-pt~g~~l~~~------------~~~~----------i~~ad~i  221 (283)
                      ..+.+ ||||+||++||++++       +|.++++| |+++.|....            .+.+          ...||++
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~  354 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK  354 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence            34445 999999999999987       68888888 9999763211            1112          2668899


Q ss_pred             EEEcCCcccc
Q 023354          222 VINKTDLASA  231 (283)
Q Consensus       222 vi~K~g~i~~  231 (283)
                      ++++.|++++
T Consensus       355 ~~l~~G~i~~  364 (365)
T 3qf7_A          355 LRITGGVVVN  364 (365)
T ss_dssp             EEEETTEEC-
T ss_pred             EEEECCEEEe
Confidence            9998888764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.18  E-value=2.2e-11  Score=115.00  Aligned_cols=88  Identities=19%  Similarity=0.286  Sum_probs=57.5

Q ss_pred             HhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHh---hcCCCCeEEEEeccCCC
Q 023354          190 ELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~---~~~~~~i~~isa~~g~g  262 (283)
                      ..++.+++++|++.+.......    ......+-.+++||+|++.......+.+.+.+..   ...+.|++++||++|.|
T Consensus       262 ~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  341 (439)
T 1mky_A          262 EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWN  341 (439)
T ss_dssp             HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBS
T ss_pred             hhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCC
Confidence            4467888999988764322110    0011345689999999875432223333333322   23568999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 023354          263 VEEIVNHILQAWEAS  277 (283)
Q Consensus       263 i~~l~~~l~~~~~~~  277 (283)
                      ++++++.+...++.+
T Consensus       342 v~~l~~~i~~~~~~~  356 (439)
T 1mky_A          342 IDRMIDAMNLAYASY  356 (439)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999887654

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.16  E-value=3.8e-11  Score=108.83  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             CCcccC-CchHHHHHHHHHHhc-----CCcEEEEe-CCCCCCc
Q 023354          172 DLLLCE-SGGDNLAANFSRELA-----DYIIYIID-VSGGDKI  207 (283)
Q Consensus       172 d~~i~e-SgGq~q~~~ia~al~-----~~~l~llD-pt~g~~l  207 (283)
                      +..+.+ |+||+|+++||++++     ++.++++| |+++.+.
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~  256 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD  256 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCH
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCH
Confidence            344445 999999999999985     46677776 9998763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.16  E-value=2.8e-13  Score=112.25  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC----CcEEEEeecCCCCC---HHHHH-Hhcc----ccCCchHHHHHhCCCCCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK----YSLAAVTNDIFTKE---DGEFL-MRNG----ALPEERIRAVETGGCPHA  149 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~----g~i~i~~~d~~~~~---~~~~~-~~ig----~v~q~~~~~i~~~g~~~~  149 (283)
                      ++++|+|++|||||||+++|+++++++    |.|.+++.++...+   ...++ +.+|    +++|+...++.- +    
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~-~----   77 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR-V----   77 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE-C----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec-C----
Confidence            589999999999999999999999864    67888777755443   23444 4678    677765322100 0    


Q ss_pred             ChHHHHHHHHHHHHH-ccccccCCCcccC--CchHHHHHHHHHHhcC
Q 023354          150 AIREDISINLGPLEE-LSNLFKADLLLCE--SGGDNLAANFSRELAD  193 (283)
Q Consensus       150 ~~~~~~~~~~~~l~~-l~~~~~~d~~i~e--SgGq~q~~~ia~al~~  193 (283)
                      . .+......+.+.. +  . .+|..+.|  |+||+||+++||++..
T Consensus        78 ~-~~~~a~l~~~i~~~l--~-g~dt~i~EglSgGq~qri~lARall~  120 (171)
T 2f1r_A           78 S-EEEGNDLDWIYERYL--S-DYDLVITEGFSKAGKDRIVVVKKPEE  120 (171)
T ss_dssp             C-HHHHTCHHHHHHHHT--T-TCSEEEEESCGGGCCCEEEECSSGGG
T ss_pred             C-hhhhhCHHHHHHhhC--C-CCCEEEECCcCCCCCcEEEEEecccC
Confidence            0 1100011223333 2  2 68888888  9999999999998863

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.14  E-value=6.9e-11  Score=106.50  Aligned_cols=163  Identities=20%  Similarity=0.175  Sum_probs=90.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccC---CchHHHHHhCCCCCCChHHHHHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALP---EERIRAVETGGCPHAAIREDISI  157 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~---q~~~~~i~~~g~~~~~~~~~~~~  157 (283)
                      --+|+|+|++|||||||+|.|+|.-.     .+......++..    ...+.+.   .....+++++|.........+. 
T Consensus        10 ~g~v~ivG~~nvGKSTLin~l~g~~~-----~i~s~~~~tT~~----~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~-   79 (308)
T 3iev_A           10 VGYVAIVGKPNVGKSTLLNNLLGTKV-----SIISPKAGTTRM----RVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLG-   79 (308)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSCCCCS----CEEEEEEETTTEEEEEEECCCCCCCCTTCHHH-
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCc-----cccCCCCCceee----EEEEEEecCCCCeEEEEECcCCCccccchhHH-
Confidence            35899999999999999999998521     111112222111    0111111   1112345566653211000000 


Q ss_pred             HHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhh-----cCCcccccCEEEEEcCCccccc
Q 023354          158 NLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK-----GGPGITQADLLVINKTDLASAI  232 (283)
Q Consensus       158 ~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~-----~~~~i~~ad~ivi~K~g~i~~~  232 (283)
                        +.+                   ...+..+..-+|.+++++|++.+......     .......+..+++||+|++...
T Consensus        80 --~~~-------------------~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~  138 (308)
T 3iev_A           80 --HSM-------------------VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPA  138 (308)
T ss_dssp             --HHH-------------------HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSG
T ss_pred             --HHH-------------------HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCH
Confidence              000                   11111222345789999998875432111     1111245678999999987321


Q ss_pred             CChHHHHhHHHHhhc-CCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          233 GADLAVMERDALRMR-DGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       233 g~~~e~~~~~~~~~~-~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                       .........+.+.. ...+++++||++|.|++++++++...++
T Consensus       139 -~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          139 -KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             -GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             -HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence             22222333444444 4678999999999999999999988764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.11  E-value=2.3e-11  Score=111.79  Aligned_cols=115  Identities=15%  Similarity=-0.013  Sum_probs=67.0

Q ss_pred             cccccccCCCcEEEEEcCCCCcHHHHHHHHHhccc-CC-CcEEEE-eecCCCCCHHHHHHhccccCCchH-----HHHHh
Q 023354           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAV-TNDIFTKEDGEFLMRNGALPEERI-----RAVET  143 (283)
Q Consensus        72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~-g~i~i~-~~d~~~~~~~~~~~~ig~v~q~~~-----~~i~~  143 (283)
                      +..+.+..+|++++|+||||||||||+|+|+|++. +. |.|.+. +....+    .....+++++|...     .+..+
T Consensus       206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~  281 (358)
T 2rcn_A          206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREF  281 (358)
T ss_dssp             HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred             HHHHHHhcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHh
Confidence            44555556899999999999999999999999998 87 998876 433221    12345788887642     12222


Q ss_pred             CCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc
Q 023354          144 GGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA  192 (283)
Q Consensus       144 ~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~  192 (283)
                      + .......+....+.+.++.++.....+..... | |++|++++|++++
T Consensus       282 ~-l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          282 G-LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             C-CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred             h-hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence            2 11111111112233445555555555555554 8 9999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.10  E-value=1.3e-10  Score=94.62  Aligned_cols=83  Identities=14%  Similarity=0.159  Sum_probs=52.7

Q ss_pred             CCcEEEEeCCCCCC---chhhc-------C--CcccccCEEEEEcCCcccccCC-hHHHHhHHHHhhcCCCCeEEEEecc
Q 023354          193 DYIIYIIDVSGGDK---IPRKG-------G--PGITQADLLVINKTDLASAIGA-DLAVMERDALRMRDGGPFIFAQVKH  259 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~~~~-------~--~~i~~ad~ivi~K~g~i~~~g~-~~e~~~~~~~~~~~~~~i~~isa~~  259 (283)
                      +..++++|++....   +....       .  ......-.+++||+|+...... ..+... .+.......+++++|+++
T Consensus        83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~-~~~~~~~~~~~~~~Sa~~  161 (182)
T 1ky3_A           83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ-ELAKSLGDIPLFLTSAKN  161 (182)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH-HHHHHTTSCCEEEEBTTT
T ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH-HHHHhcCCCeEEEEecCC
Confidence            57899999876421   11100       0  0012345899999998644221 222222 233335677899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWEA  276 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~~  276 (283)
                      |.|+++++++|......
T Consensus       162 ~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          162 AINVDTAFEEIARSALQ  178 (182)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999876643

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.07  E-value=9.8e-12  Score=108.17  Aligned_cols=117  Identities=10%  Similarity=0.075  Sum_probs=57.7

Q ss_pred             CCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchH-------H
Q 023354           68 RAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (283)
Q Consensus        68 ~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~  139 (283)
                      ...++++++|..+ |++++|+||||||||||+++|+|++   |.+.+.          ..++.+++++|+..       .
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~   77 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ   77 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence            3457889999855 9999999999999999999999976   222111          11233444444321       1


Q ss_pred             HHH--hCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          140 AVE--TGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       140 ~i~--~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      .+.  .+....... ..+.....+.|+.+  ....+..+.+ |+|++||+.+ ++++ ++.++|+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilD  140 (245)
T 2jeo_A           78 KAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFE  140 (245)
T ss_dssp             HHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEE
T ss_pred             hhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEe
Confidence            111  111111000 00112223444443  2334444555 9999998866 3444 57788888

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.02  E-value=2.4e-11  Score=114.01  Aligned_cols=192  Identities=13%  Similarity=-0.004  Sum_probs=77.8

Q ss_pred             ccccccCCCCCCCCCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C--cEEEEeecCCCCCHHHHHHhc
Q 023354           54 HSHEPIYSPGYFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y--SLAAVTNDIFTKEDGEFLMRN  130 (283)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g--~i~i~~~d~~~~~~~~~~~~i  130 (283)
                      .+.+.+....|..  ..++.+++|.     ++|+|+||||||||+++|+|...+. +  .+.+..  ..+.    .+..+
T Consensus        11 ~l~~~~l~~~y~~--~~vl~~vsf~-----I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~--~~t~----~~~~i   77 (418)
T 2qag_C           11 YVGFANLPNQVYR--KSVKRGFEFT-----LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI--KKTV----QVEQS   77 (418)
T ss_dssp             ----CCCCCCTTT--TTCC-CCCEE-----EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CC----EEEEE
T ss_pred             cEEEEecceeECC--EEEecCCCEE-----EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCC--ccce----eeeeE
Confidence            4555566666542  3567777764     5999999999999999999987642 3  211110  0000    12346


Q ss_pred             cccCCchHH-----HHHhCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhc-CCc---EEEEe
Q 023354          131 GALPEERIR-----AVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELA-DYI---IYIID  200 (283)
Q Consensus       131 g~v~q~~~~-----~i~~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~-~~~---l~llD  200 (283)
                      ++++|....     ++++.|+..... ......+.+.+...     +      +.++++++.++++++ ++.   ++++|
T Consensus        78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~-----~------~~~l~qr~~IaRal~~d~~~~vlL~ld  146 (418)
T 2qag_C           78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSK-----F------EDYLNAESRVNRRQMPDNRVQCCLYFI  146 (418)
T ss_dssp             ECC------CEEEEEEECC-----------CHHHHHHHHHH-----H------HHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred             EEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHH-----H------HHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence            777664321     222333321100 00001111111110     0      123345667777776 443   44444


Q ss_pred             -CC-CCCCchh-----hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhh--cCCCCeEEEEeccCCCHHHHHHHHH
Q 023354          201 -VS-GGDKIPR-----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHGLGVEEIVNHIL  271 (283)
Q Consensus       201 -pt-~g~~l~~-----~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~--~~~~~i~~isa~~g~gi~~l~~~l~  271 (283)
                       |+ .+.+...     ....  ...-++|+||+|++..  .....+...+.+.  ..+.+++.+|++++.++++++..+.
T Consensus       147 ePt~~~L~~~d~~~lk~L~~--~v~iIlVinK~Dll~~--~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~  222 (418)
T 2qag_C          147 APSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIK  222 (418)
T ss_dssp             CC-CCSCCHHHHHHHHHHTT--TSEEEEEEESTTSSCH--HHHHHHHHHHHHHHHHHTCCCCCCC---------------
T ss_pred             cCcccCCCHHHHHHHHHHhc--cCcEEEEEEcccCccH--HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHH
Confidence             87 4543221     1111  3345899999998753  1222222222221  1367888999999999888776666


Q ss_pred             HH
Q 023354          272 QA  273 (283)
Q Consensus       272 ~~  273 (283)
                      ..
T Consensus       223 ~~  224 (418)
T 2qag_C          223 DR  224 (418)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.01  E-value=3e-10  Score=112.54  Aligned_cols=123  Identities=17%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC---CCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD---KYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDI  155 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~---~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~  155 (283)
                      .++.+++|+|++|||||||+++|++...+   .|+| ..+..+..+.+.++.+.+.+.++.....  .            
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~--~------------   71 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLL--F------------   71 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEE--E------------
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEe--e------------
Confidence            45889999999999999999999986543   3666 3444444555666666777766542100  0            


Q ss_pred             HHHHHHHHHccccccCCCcccCCchHHH---HHHHHHHhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCc
Q 023354          156 SINLGPLEELSNLFKADLLLCESGGDNL---AANFSRELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDL  228 (283)
Q Consensus       156 ~~~~~~l~~l~~~~~~d~~i~eSgGq~q---~~~ia~al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~  228 (283)
                                   ......++++.|+..   .+.-+...++..++++|++.+.+.+....    ......-.+++||.|+
T Consensus        72 -------------~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~  138 (665)
T 2dy1_A           72 -------------RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK  138 (665)
T ss_dssp             -------------TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             -------------CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCch
Confidence                         001111222333321   12222334688899999888754322110    0113445788999998


Q ss_pred             c
Q 023354          229 A  229 (283)
Q Consensus       229 i  229 (283)
                      .
T Consensus       139 ~  139 (665)
T 2dy1_A          139 G  139 (665)
T ss_dssp             C
T ss_pred             h
Confidence            6

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.01  E-value=1.5e-09  Score=91.72  Aligned_cols=103  Identities=17%  Similarity=0.180  Sum_probs=61.8

Q ss_pred             CCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhcCCc------ccccCEEEEEcCCcccccCChHHHH
Q 023354          172 DLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKGGPG------ITQADLLVINKTDLASAIGADLAVM  239 (283)
Q Consensus       172 d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~~~~------i~~ad~ivi~K~g~i~~~g~~~e~~  239 (283)
                      ...++++.|+.....+....   ++.+|+++|++....+   .......      -...-.||+||+|+........+..
T Consensus        85 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~  164 (217)
T 2f7s_A           85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQA  164 (217)
T ss_dssp             EEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHH
Confidence            34455566655443333333   3688999998764221   1111000      1234489999999875432223333


Q ss_pred             hHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          240 ERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       240 ~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ......  .+.+++++|++++.|+++++++|...+..
T Consensus       165 ~~~~~~--~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          165 RELADK--YGIPYFETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             HHHHHH--TTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHHH--CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            332222  35689999999999999999999876543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.01  E-value=1.1e-09  Score=87.89  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=52.6

Q ss_pred             cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   ...      ....-..+-.+|+||+|+........+......  ...+.+++++|+++|.|
T Consensus        73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~g  150 (166)
T 3q72_A           73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA--VVFDCKFIETSAALHHN  150 (166)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHH--HHTTCEEEECBGGGTBS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHH--HHhCCcEEEeccCCCCC
Confidence            4678899998754211   110      000112345899999998765333333332222  22457899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWEA  276 (283)
Q Consensus       263 i~~l~~~l~~~~~~  276 (283)
                      +++++++|......
T Consensus       151 i~~l~~~l~~~~~~  164 (166)
T 3q72_A          151 VQALFEGVVRQIRL  164 (166)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.00  E-value=1.1e-10  Score=97.98  Aligned_cols=79  Identities=14%  Similarity=0.075  Sum_probs=49.6

Q ss_pred             cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh---------------c
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM---------------R  247 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---------------~  247 (283)
                      ++..++++|.+....+..   ..    .  .....+-.+++||+|+...  ...+.+.+.+...               .
T Consensus        93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
T 1f6b_A           93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNA  170 (198)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHHHHHHHhCcccccccccccccccccC
Confidence            467899999877532211   00    0  0113345899999998653  2334443332211               1


Q ss_pred             CCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          248 DGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       248 ~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      ...+++++||++|.|+++++++|.+
T Consensus       171 ~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          171 RPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.00  E-value=1.2e-09  Score=90.57  Aligned_cols=153  Identities=16%  Similarity=0.116  Sum_probs=85.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLG  160 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~  160 (283)
                      -..|+|+|+.|+|||||++.|++...........+.+...       ..+           ..                 
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-------~~~-----------~~-----------------   67 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV-------KTV-----------YR-----------------   67 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE-------EEE-----------EE-----------------
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE-------EEE-----------EE-----------------
Confidence            4689999999999999999999853221111111100000       000           00                 


Q ss_pred             HHHHccccccCCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcc
Q 023354          161 PLEELSNLFKADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLA  229 (283)
Q Consensus       161 ~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i  229 (283)
                            ........++++.|+.....+....   ++..++++|.+....   +.....     ..-...-.+|+||.|+.
T Consensus        68 ------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  141 (191)
T 3dz8_A           68 ------HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME  141 (191)
T ss_dssp             ------TTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             ------CCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence                  0011123344455544333333322   367899999876421   111100     00123347899999986


Q ss_pred             cccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          230 SAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       230 ~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      .......+........  .+.+++++|+++|.|+++++++|......
T Consensus       142 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          142 EERVVPTEKGQLLAEQ--LGFDFFEASAKENISVRQAFERLVDAICD  186 (191)
T ss_dssp             GGCCSCHHHHHHHHHH--HTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHH--cCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5533333333332222  25689999999999999999999887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.99  E-value=3.7e-10  Score=103.70  Aligned_cols=160  Identities=24%  Similarity=0.244  Sum_probs=89.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCc--hHHHHHhCCCCCCChHHHHH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE--RIRAVETGGCPHAAIREDIS  156 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~--~~~~i~~~g~~~~~~~~~~~  156 (283)
                      .....++|+|++|||||||++.|++...     .+......+...     .++.+.+.  ...+++++|..         
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-----~~~~~~~~t~~~-----~~~~~~~~~~~~~l~Dt~G~~---------  225 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-----EIASYPFTTRGI-----NVGQFEDGYFRYQIIDTPGLL---------  225 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCC-----EEECCTTCSSCE-----EEEEEEETTEEEEEEECTTTS---------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-----ccCCCCCeeece-----eEEEEEecCceEEEEeCCCcc---------
Confidence            3567999999999999999999998532     111111111110     11111111  11223344431         


Q ss_pred             HHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcCCcEEEEeCCCCC--Cchhh------cCCcc-cccCEEEEEcC
Q 023354          157 INLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELADYIIYIIDVSGGD--KIPRK------GGPGI-TQADLLVINKT  226 (283)
Q Consensus       157 ~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~~~l~llDpt~g~--~l~~~------~~~~i-~~ad~ivi~K~  226 (283)
                                     +....+ +.++++.+......++..++|+|++...  ++...      ..... ..+-.+|+||.
T Consensus       226 ---------------~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~  290 (357)
T 2e87_A          226 ---------------DRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKI  290 (357)
T ss_dssp             ---------------SSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCT
T ss_pred             ---------------ccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence                           111222 6666665542222357899999976543  32211      00001 34457999999


Q ss_pred             CcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          227 DLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       227 g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      |+....  ..+.....+.  ....+++++||++|+|++++++++...+..
T Consensus       291 Dl~~~~--~~~~~~~~~~--~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          291 DVADEE--NIKRLEKFVK--EKGLNPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTCCHH--HHHHHHHHHH--HTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             ccCChH--HHHHHHHHHH--hcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            986541  1121222222  245789999999999999999999876643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.99  E-value=3.9e-10  Score=93.77  Aligned_cols=79  Identities=14%  Similarity=0.117  Sum_probs=49.3

Q ss_pred             cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh----------cCCCCe
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM----------RDGGPF  252 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~----------~~~~~i  252 (283)
                      ++..++++|.+....+..   ..    .  .....+-.+++||+|+...  ...+.+.+.+...          ....++
T Consensus        91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T 1m2o_B           91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEV  168 (190)
T ss_dssp             CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHHHHHHHhCCccccccccccccceEEE
Confidence            367899999887532211   00    0  0113345899999998753  2333333322211          134578


Q ss_pred             EEEEeccCCCHHHHHHHHHH
Q 023354          253 IFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       253 ~~isa~~g~gi~~l~~~l~~  272 (283)
                      +++||++|.|+++++++|.+
T Consensus       169 ~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          169 FMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             EECBTTTTBSHHHHHHHHHT
T ss_pred             EEeECCcCCCHHHHHHHHHh
Confidence            99999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.99  E-value=1.4e-09  Score=103.10  Aligned_cols=89  Identities=17%  Similarity=0.206  Sum_probs=61.7

Q ss_pred             HhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhc---CCCCeEEEEeccCCC
Q 023354          190 ELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMR---DGGPFIFAQVKHGLG  262 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~---~~~~i~~isa~~g~g  262 (283)
                      .-++..|+++|++.+.......    ......+-.+|+||+|++.......+.+.+.+.+..   .+++++++||++|.|
T Consensus       276 ~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g  355 (456)
T 4dcu_A          276 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKR  355 (456)
T ss_dssp             HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTT
T ss_pred             hhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcC
Confidence            3467899999988763221110    001134558999999998765445555555555443   468999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 023354          263 VEEIVNHILQAWEAST  278 (283)
Q Consensus       263 i~~l~~~l~~~~~~~~  278 (283)
                      ++++++++...++.+.
T Consensus       356 v~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          356 IHTLMPAIIKASENHS  371 (456)
T ss_dssp             GGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999998876543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.99  E-value=1.7e-10  Score=96.91  Aligned_cols=83  Identities=14%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             CCcEEEEeCCCCCCchh-hc---CCcccccCEEEEEcCCcccccCCh---HHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          193 DYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGAD---LAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~-~~---~~~i~~ad~ivi~K~g~i~~~g~~---~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      +..+++.|.+.+..... +.   .........++.||.|.+.. |..   .+.+...+.+.....+.+++|++++.|+++
T Consensus       110 ~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~  188 (210)
T 1pui_A          110 QGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS-GARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK  188 (210)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH-HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHH
T ss_pred             cEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc-hhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHH
Confidence            45677888765432211 10   00123344677999997643 111   111222222211235678899999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          266 IVNHILQAWEA  276 (283)
Q Consensus       266 l~~~l~~~~~~  276 (283)
                      ++++|.+....
T Consensus       189 l~~~l~~~~~~  199 (210)
T 1pui_A          189 LRQKLDTWFSE  199 (210)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhh
Confidence            99999887643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.98  E-value=7.7e-10  Score=91.18  Aligned_cols=81  Identities=12%  Similarity=0.092  Sum_probs=52.4

Q ss_pred             CCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccCCCHHH
Q 023354          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g~gi~~  265 (283)
                      +.+++++|++........    .......+..+|+||.|+...  ...+...+.+...   ....+++++|+++|.|+++
T Consensus       106 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  183 (195)
T 3pqc_A          106 QMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM--SERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISE  183 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHH
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh--HHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence            567888998765321110    001124456899999998754  2333333333222   2446899999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          266 IVNHILQAWE  275 (283)
Q Consensus       266 l~~~l~~~~~  275 (283)
                      ++++|.+..+
T Consensus       184 l~~~l~~~l~  193 (195)
T 3pqc_A          184 LLDLISTLLK  193 (195)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999987764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.98  E-value=1.1e-10  Score=110.06  Aligned_cols=82  Identities=10%  Similarity=0.055  Sum_probs=60.3

Q ss_pred             CccccccCCCCCCCCCCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee---cCCCC-----C
Q 023354           53 PHSHEPIYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN---DIFTK-----E  122 (283)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~---d~~~~-----~  122 (283)
                      +......+++.|.. ...+++.+ |. .+|++++|+||||||||||+++|+|++.++ |.+.+.+.   ++...     .
T Consensus       130 ~~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~  207 (438)
T 2dpy_A          130 NPLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG  207 (438)
T ss_dssp             CTTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred             CceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence            34555666666643 23477778 76 459999999999999999999999999988 88888876   33221     1


Q ss_pred             HHHHHHhccccCCc
Q 023354          123 DGEFLMRNGALPEE  136 (283)
Q Consensus       123 ~~~~~~~ig~v~q~  136 (283)
                      ...+.+.++|++|.
T Consensus       208 ~~~l~r~i~~v~q~  221 (438)
T 2dpy_A          208 PDGRARSVVIAAPA  221 (438)
T ss_dssp             HHHHHTEEEEEECT
T ss_pred             ccccCceEEEEECC
Confidence            23355678999885

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.98  E-value=9.9e-10  Score=103.50  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=59.3

Q ss_pred             HhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccCCC
Q 023354          190 ELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHGLG  262 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g~g  262 (283)
                      .-++..++++|++.+...+....    .....+-.+++||+|++.......+.+.+.+.+.   ..++|++++||++|.|
T Consensus       256 ~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~  335 (436)
T 2hjg_A          256 DRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKR  335 (436)
T ss_dssp             HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTT
T ss_pred             HhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCC
Confidence            34688999999988643222110    0013456899999999865433333343333333   3578999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 023354          263 VEEIVNHILQAWEAS  277 (283)
Q Consensus       263 i~~l~~~l~~~~~~~  277 (283)
                      ++++++++...+..+
T Consensus       336 v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          336 IHTLMPAIIKASENH  350 (436)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998887654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.97  E-value=1.8e-09  Score=93.92  Aligned_cols=192  Identities=18%  Similarity=0.168  Sum_probs=102.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcc--ccCCchHHHHH----hCCCCCCC--
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNG--ALPEERIRAVE----TGGCPHAA--  150 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig--~v~q~~~~~i~----~~g~~~~~--  150 (283)
                      +..+++++|+.|||||||++.|+..+. . .++.++..|+...... +.....  -... ....+.    .+++.++.  
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   89 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP-YEPSIDVREFVT-VEEIMREGYGPNGAIVESYD   89 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS-SCCSEEGGGTCC-HHHHHTTTCCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC-CCCCCChhhccc-HHHHhhccCCCCCcEEecHH
Confidence            457899999999999999999998776 6 4888888887632100 000000  0000 000000    00000000  


Q ss_pred             hH-HHHHHHHHHHHHccccccCCCcccCCchHHHHHHH-------HHHhcC-CcEEEEeCCCCCCchhh---------cC
Q 023354          151 IR-EDISINLGPLEELSNLFKADLLLCESGGDNLAANF-------SRELAD-YIIYIIDVSGGDKIPRK---------GG  212 (283)
Q Consensus       151 ~~-~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~i-------a~al~~-~~l~llDpt~g~~l~~~---------~~  212 (283)
                      .. .......+.++.+  ...++.+++++.|+.....+       ..++++ .+|+++|++...+....         ..
T Consensus        90 ~~~~~~~~l~~~l~~~--~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~~~iv~vvD~~~~~~~~~~~~~~~~~~~~~  167 (262)
T 1yrb_A           90 RLMEKFNEYLNKILRL--EKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID  167 (262)
T ss_dssp             HHHTTHHHHHHHHHHH--HHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHH--hhcCCEEEEeCCCccchhhhhhhHHHHHHHHhhceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence            00 0011122233333  23578889998887554322       122334 55667886554321110         00


Q ss_pred             CcccccCEEEEEcCCcccccCC--hHHH------HhHH------------------HHhhcCCCCeEEEEeccCCCHHHH
Q 023354          213 PGITQADLLVINKTDLASAIGA--DLAV------MERD------------------ALRMRDGGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       213 ~~i~~ad~ivi~K~g~i~~~g~--~~e~------~~~~------------------~~~~~~~~~i~~isa~~g~gi~~l  266 (283)
                      .....+..+|+||+|+......  ..+.      +.+.                  +.+..+..+++++|++++.|++++
T Consensus       168 ~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l  247 (262)
T 1yrb_A          168 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL  247 (262)
T ss_dssp             HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred             cccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence            1124567899999998643110  0010      0011                  122234458999999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          267 VNHILQAWEA  276 (283)
Q Consensus       267 ~~~l~~~~~~  276 (283)
                      +++|.+.++.
T Consensus       248 ~~~i~~~~~~  257 (262)
T 1yrb_A          248 ETLAYEHYCT  257 (262)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999887754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.96  E-value=2e-09  Score=88.93  Aligned_cols=102  Identities=19%  Similarity=0.201  Sum_probs=60.7

Q ss_pred             CCCcccCCchHHHHHHHHHH---hcCCcEEEEeCCCCCCchh---hcCCc---ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          171 ADLLLCESGGDNLAANFSRE---LADYIIYIIDVSGGDKIPR---KGGPG---ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       171 ~d~~i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~~l~~---~~~~~---i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      ....++++.|+.....+...   -++..++++|++....+..   .....   ....-.+|+||+| ........+...+
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D-~~~~~~~~~~~~~  171 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID-KNKFQVDILEVQK  171 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT-CC-CCSCHHHHHH
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC-cccccCCHHHHHH
Confidence            34445667775433223322   2468899999887532111   10000   1134589999999 4322233344444


Q ss_pred             HHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          242 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       242 ~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .+..  .+.+++++||+++.|+++++++|.....
T Consensus       172 ~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          172 YAQD--NNLLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             HHHH--TTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHH--cCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            3333  3568999999999999999999987654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.96  E-value=1.7e-09  Score=89.42  Aligned_cols=80  Identities=10%  Similarity=0.020  Sum_probs=51.8

Q ss_pred             CCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHh---hcCCCCeEEEEeccCCCHHH
Q 023354          193 DYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALR---MRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~---~~~~~~i~~isa~~g~gi~~  265 (283)
                      +..++++|++........    .......+..+|+||+|+....  ..+...+.+.+   .....+++++|++++.|+++
T Consensus       107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  184 (195)
T 1svi_A          107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKG--KWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE  184 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG--GHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChH--HHHHHHHHHHHHHcccCCCceEEEEccCCCCHHH
Confidence            578899998775332211    0001234568999999987642  22222222322   23467899999999999999


Q ss_pred             HHHHHHHHH
Q 023354          266 IVNHILQAW  274 (283)
Q Consensus       266 l~~~l~~~~  274 (283)
                      ++++|.+.+
T Consensus       185 l~~~l~~~l  193 (195)
T 1svi_A          185 AWGAIKKMI  193 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.96  E-value=2.2e-10  Score=97.02  Aligned_cols=69  Identities=14%  Similarity=0.074  Sum_probs=39.1

Q ss_pred             CCCCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCH-HHHHHhccccCCchHHH
Q 023354           67 RRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-GEFLMRNGALPEERIRA  140 (283)
Q Consensus        67 ~~~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~-~~~~~~ig~v~q~~~~~  140 (283)
                      ...+.+++ .-..+|++++|+||||||||||+++|+|+++.   +.+.. ++....+ ...++.++|++|++..+
T Consensus         7 ~~~~~~~~-~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~   76 (207)
T 1znw_A            7 DTKPTARG-QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSV-SATTRAPRPGEVDGVDYHFIDPTRF   76 (207)
T ss_dssp             -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECC-CEESSCCCTTCCBTTTBEECCHHHH
T ss_pred             CCCcCCCC-CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcc-cccccCCcccccCCCeeEecCHHHH
Confidence            33445555 22356999999999999999999999999852   22221 1111111 11245689999987543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.96  E-value=4.5e-10  Score=98.93  Aligned_cols=49  Identities=16%  Similarity=0.418  Sum_probs=41.4

Q ss_pred             CCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccC--CCcEEEEeecCC
Q 023354           70 PPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIF  119 (283)
Q Consensus        70 ~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~g~i~i~~~d~~  119 (283)
                      +.+++++ ..+|++++|+||||||||||+++|+|+++|  .|+|.+++.++.
T Consensus        15 ~vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~   65 (261)
T 2eyu_A           15 DKVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE   65 (261)
T ss_dssp             THHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred             HHHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence            3566777 567999999999999999999999999976  489988887653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.95  E-value=3.8e-10  Score=92.41  Aligned_cols=78  Identities=21%  Similarity=0.269  Sum_probs=47.8

Q ss_pred             hcCCcEEEEeCCCCCCchhh--cC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          191 LADYIIYIIDVSGGDKIPRK--GG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~~~--~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      -++..++++|.+........  ..     .....+-.+|+||+|+.... ..  .      ......+++++||++|.|+
T Consensus        83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~--~------~~~~~~~~~~~SA~~g~gv  153 (172)
T 2gj8_A           83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET-LG--M------SEVNGHALIRLSARTGEGV  153 (172)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC-CE--E------EEETTEEEEECCTTTCTTH
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcch-hh--h------hhccCCceEEEeCCCCCCH
Confidence            34688999998765321110  00     00123458999999985321 10  0      0113457899999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 023354          264 EEIVNHILQAWEAS  277 (283)
Q Consensus       264 ~~l~~~l~~~~~~~  277 (283)
                      ++++++|.+.+...
T Consensus       154 ~~l~~~l~~~~~~~  167 (172)
T 2gj8_A          154 DVLRNHLKQSMGFD  167 (172)
T ss_dssp             HHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999998876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.95  E-value=8.2e-10  Score=89.42  Aligned_cols=84  Identities=14%  Similarity=0.113  Sum_probs=51.6

Q ss_pred             cCCcEEEEeCCCCCCc---hh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   ..      .....-..+-.+|+||+|+.....-..+........  .+.+++++||++|.|
T Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~g~g  155 (175)
T 2nzj_A           78 GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV--FDCKFIETSATLQHN  155 (175)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH--HTSEEEECBTTTTBS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH--cCCeEEEEecCCCCC
Confidence            3578899998763211   11      000011234589999999875432223322222222  246899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 023354          263 VEEIVNHILQAWEAS  277 (283)
Q Consensus       263 i~~l~~~l~~~~~~~  277 (283)
                      +++++++|.......
T Consensus       156 i~~l~~~l~~~~~~~  170 (175)
T 2nzj_A          156 VAELFEGVVRQLRLR  170 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998876544

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.95  E-value=1.5e-09  Score=87.29  Aligned_cols=83  Identities=17%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             hcCCcEEEEeCCCCC---Cchhhc-------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          191 LADYIIYIIDVSGGD---KIPRKG-------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       191 l~~~~l~llDpt~g~---~l~~~~-------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      -++..++++|++...   .+....       ...-..+-.+++||.|+........+........  .+.+++++|+++|
T Consensus        74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~  151 (172)
T 2erx_A           74 KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART--WKCAFMETSAKLN  151 (172)
T ss_dssp             HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTCEEEECBTTTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHH--hCCeEEEecCCCC
Confidence            357889999987632   111100       0001234589999999876532222222222222  3468899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~  275 (283)
                      .|+++++++|.....
T Consensus       152 ~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          152 HNVKELFQELLNLEK  166 (172)
T ss_dssp             BSHHHHHHHHHHTCC
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999987553

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.95  E-value=1.7e-09  Score=86.51  Aligned_cols=83  Identities=19%  Similarity=0.111  Sum_probs=52.2

Q ss_pred             cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   ...      ........-.+|+||.|+........+........  .+.+++++|+++|.|
T Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~g  152 (167)
T 1kao_A           75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE--WGCPFMETSAKSKTM  152 (167)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTSCEEEECTTCHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH--hCCCEEEecCCCCcC
Confidence            4688999998764211   110      00011234589999999875432223333322222  256899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWEA  276 (283)
Q Consensus       263 i~~l~~~l~~~~~~  276 (283)
                      +++++++|.....+
T Consensus       153 i~~l~~~l~~~~~~  166 (167)
T 1kao_A          153 VDELFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999877653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.94  E-value=3.4e-09  Score=89.69  Aligned_cols=85  Identities=8%  Similarity=-0.043  Sum_probs=52.1

Q ss_pred             CCcEEEEeCCCCCCchh-hc---CCcccccCEEEEEcCCcccccCC--hHHHHhHHHHhh-----cCCCCeEEEEeccCC
Q 023354          193 DYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGA--DLAVMERDALRM-----RDGGPFIFAQVKHGL  261 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~-~~---~~~i~~ad~ivi~K~g~i~~~g~--~~e~~~~~~~~~-----~~~~~i~~isa~~g~  261 (283)
                      +.+++++|++.+..... ..   .........+|+||+|++.....  ..+.+.+.+...     ....+++.+|+++|.
T Consensus       117 d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~  196 (223)
T 4dhe_A          117 CGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRT  196 (223)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTB
T ss_pred             CEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCc
Confidence            45899999876532111 00   01123456899999998754110  111122222222     356789999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 023354          262 GVEEIVNHILQAWEAS  277 (283)
Q Consensus       262 gi~~l~~~l~~~~~~~  277 (283)
                      |+++++++|...++..
T Consensus       197 gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          197 GLDDAHALIESWLRPA  212 (223)
T ss_dssp             SHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHhcCcc
Confidence            9999999999877543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.94  E-value=3.3e-09  Score=88.32  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=52.6

Q ss_pred             cCCcEEEEeCCCCCCc---hh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   ..      .........-.+|+||.|+........+........  .+.+++++|+++|.|
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~g  163 (206)
T 2bov_A           86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ--WNVNYVETSAKTRAN  163 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEEECTTTCTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH--hCCeEEEEeCCCCCC
Confidence            5788999998764211   11      001111234589999999876533333333333332  246899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWE  275 (283)
Q Consensus       263 i~~l~~~l~~~~~  275 (283)
                      +++++++|.....
T Consensus       164 i~~l~~~l~~~i~  176 (206)
T 2bov_A          164 VDKVFFDLMREIR  176 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.94  E-value=2e-09  Score=89.01  Aligned_cols=84  Identities=24%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....   +.....     ..-...-.+|+||+|+........+......  ...+.+++++|+++|.|+
T Consensus        89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~g~gv  166 (196)
T 3tkl_A           89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA--DSLGIPFLETSAKNATNV  166 (196)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH--HHTTCCEEEECTTTCTTH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHH--HHcCCcEEEEeCCCCCCH
Confidence            467899999876421   111100     0012345899999998765433333332222  224578999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 023354          264 EEIVNHILQAWEAS  277 (283)
Q Consensus       264 ~~l~~~l~~~~~~~  277 (283)
                      ++++++|...+...
T Consensus       167 ~~l~~~l~~~i~~~  180 (196)
T 3tkl_A          167 EQSFMTMAAEIKKR  180 (196)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998876543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.94  E-value=1.5e-09  Score=104.73  Aligned_cols=102  Identities=16%  Similarity=0.013  Sum_probs=65.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCc-E-EEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYS-L-AAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDIS  156 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~-i-~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~  156 (283)
                      .+|++++|+|+||||||||++.+++...+.|. + .+...+    ...++..+.          ..+ +.   ..     
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee----~~~~l~~~~----------~~~-g~---~~-----  335 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE----SRAQLLRNA----------YSW-GM---DF-----  335 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS----CHHHHHHHH----------HTT-SC---CH-----
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC----CHHHHHHHH----------HHc-CC---CH-----
Confidence            46999999999999999999999999887764 3 333322    122222211          011 11   11     


Q ss_pred             HHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEeCCCCCC
Q 023354          157 INLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIIDVSGGDK  206 (283)
Q Consensus       157 ~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llDpt~g~~  206 (283)
                         +.+...+.....+....+ |+|++|++.+|+++. +|.++++||+++.+
T Consensus       336 ---~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld  384 (525)
T 1tf7_A          336 ---EEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALA  384 (525)
T ss_dssp             ---HHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred             ---HHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence               012222223333444444 999999999999987 59999999888644

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.94  E-value=3.3e-09  Score=84.80  Aligned_cols=82  Identities=12%  Similarity=0.115  Sum_probs=52.4

Q ss_pred             cCCcEEEEeCCCCCCch---hh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|++....+.   ..      ........-.+++||+|+........+........  .+.+++++|+++|.|
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~g  153 (168)
T 1u8z_A           76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ--WNVNYVETSAKTRAN  153 (168)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTCEEEECCTTTCTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH--cCCeEEEeCCCCCCC
Confidence            57889999987642111   10      00001234589999999876533333333333322  246899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWE  275 (283)
Q Consensus       263 i~~l~~~l~~~~~  275 (283)
                      ++++++++.....
T Consensus       154 i~~l~~~l~~~i~  166 (168)
T 1u8z_A          154 VDKVFFDLMREIR  166 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.93  E-value=2e-09  Score=87.60  Aligned_cols=83  Identities=24%  Similarity=0.180  Sum_probs=52.5

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....   +.....     ......-.+++||+|+........+........  .+.+++++||+++.|+
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi  161 (180)
T 2g6b_A           84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKE--YGLPFMETSAKTGLNV  161 (180)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH--HTCCEEECCTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHH--cCCeEEEEeCCCCCCH
Confidence            367899999876421   111100     001234589999999875432233333332222  2468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      +++++++......
T Consensus       162 ~~l~~~l~~~~~~  174 (180)
T 2g6b_A          162 DLAFTAIAKELKR  174 (180)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.93  E-value=1.6e-09  Score=87.21  Aligned_cols=81  Identities=20%  Similarity=0.176  Sum_probs=51.0

Q ss_pred             CCcEEEEeCCCCCCch---hhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKIP---RKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~---~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..++++|++....+.   .....     .-...-.+++||.|+........+........  .+.+++++|+++|.|++
T Consensus        80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~  157 (170)
T 1z08_A           80 NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES--VGAKHYHTSAKQNKGIE  157 (170)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH--TTCEEEEEBTTTTBSHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHH--cCCeEEEecCCCCCCHH
Confidence            5788999987642111   10000     01233489999999876432333333333222  35789999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          265 EIVNHILQAWE  275 (283)
Q Consensus       265 ~l~~~l~~~~~  275 (283)
                      +++++|.....
T Consensus       158 ~l~~~l~~~~~  168 (170)
T 1z08_A          158 ELFLDLCKRMI  168 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.93  E-value=1.5e-09  Score=87.31  Aligned_cols=81  Identities=14%  Similarity=0.053  Sum_probs=49.5

Q ss_pred             cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....+.   ....     ..-...-.+++||+|+........+........  .+.+++++|++++.|+
T Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i  156 (170)
T 1z0j_A           79 SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS--IHAIFVETSAKNAINI  156 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHH--cCCEEEEEeCCCCcCH
Confidence            35788999987642111   1000     001223367789999976532233333332222  3568999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      ++++++|....
T Consensus       157 ~~l~~~i~~~i  167 (170)
T 1z0j_A          157 NELFIEISRRI  167 (170)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.92  E-value=5e-09  Score=85.97  Aligned_cols=83  Identities=14%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..|+++|++....+   ...      .......+-.+|+||.|+........+........  .+.+++++|++++.|
T Consensus        94 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~  171 (195)
T 3bc1_A           94 AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK--YGIPYFETSAANGTN  171 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCCEEECCTTTCTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH--cCCCEEEEECCCCCC
Confidence            3578999998764211   110      00001334589999999876432333333333222  246899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWEA  276 (283)
Q Consensus       263 i~~l~~~l~~~~~~  276 (283)
                      +++++++|......
T Consensus       172 v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          172 ISHAIEMLLDLIMK  185 (195)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.92  E-value=1.5e-09  Score=87.38  Aligned_cols=83  Identities=19%  Similarity=0.146  Sum_probs=53.6

Q ss_pred             cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+...   .+....      ...-..+-.+|+||.|+........+........  .+.+++++|++++.|
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~  153 (169)
T 3q85_A           76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT--LSCKHIETSAALHHN  153 (169)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECBTTTTBS
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHH--cCCcEEEecCccCCC
Confidence            57889999987632   111110      0001234589999999875433343443333222  356899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWEA  276 (283)
Q Consensus       263 i~~l~~~l~~~~~~  276 (283)
                      ++++++++......
T Consensus       154 v~~l~~~l~~~i~~  167 (169)
T 3q85_A          154 TRELFEGAVRQIRL  167 (169)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999876643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.92  E-value=4.7e-10  Score=90.98  Aligned_cols=80  Identities=21%  Similarity=0.282  Sum_probs=48.0

Q ss_pred             cCCcEEEEeCCCCCCchhhcC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKGG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      ++..++++|+++.........  .....+-.++.||.|+........+ . ..+.+. .+.+++++||++|.|+++++++
T Consensus        82 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~-~~~~~~-~~~~~~~~SA~~~~~v~~l~~~  158 (165)
T 2wji_A           82 PDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEID-V-DKLEKI-LGVKVVPLSAAKKMGIEELKKA  158 (165)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCC-H-HHHHHH-HTSCEEECBGGGTBSHHHHHHH
T ss_pred             CCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhH-H-HHHHHH-hCCCEEEEEcCCCCCHHHHHHH
Confidence            467888999876322111000  0013345899999998643221111 1 111121 2468999999999999999999


Q ss_pred             HHHHH
Q 023354          270 ILQAW  274 (283)
Q Consensus       270 l~~~~  274 (283)
                      +....
T Consensus       159 l~~~~  163 (165)
T 2wji_A          159 ISIAV  163 (165)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.92  E-value=1.1e-09  Score=93.68  Aligned_cols=83  Identities=17%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             CCcEEEEeCCCCCCch--h------hcCCc-ccccCEEEEEcCCcccccCChHHH--HhHHHHhhc-CCCCeEEEEeccC
Q 023354          193 DYIIYIIDVSGGDKIP--R------KGGPG-ITQADLLVINKTDLASAIGADLAV--MERDALRMR-DGGPFIFAQVKHG  260 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~--~------~~~~~-i~~ad~ivi~K~g~i~~~g~~~e~--~~~~~~~~~-~~~~i~~isa~~g  260 (283)
                      +.+|+++|++....+.  .      ..... -...-.+|+||+|+.....-..+.  ....+.... ...+++++||++|
T Consensus       110 d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g  189 (228)
T 2qu8_A          110 GVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTG  189 (228)
T ss_dssp             EEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTC
T ss_pred             cEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccC
Confidence            5788999987653221  1      00000 134458999999987543222221  111222222 2268899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~  275 (283)
                      .|+++++++|...+.
T Consensus       190 ~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          190 VGVEQAKITACELLK  204 (228)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.92  E-value=1.7e-09  Score=86.90  Aligned_cols=81  Identities=22%  Similarity=0.187  Sum_probs=49.2

Q ss_pred             cCCcEEEEeCCCCCCchh---hcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....+..   ...     ..-...-.++.||+|+........+.......  ..+.+++++|+++|.|+
T Consensus        79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gi  156 (170)
T 1r2q_A           79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD--DNSLLFMETSAKTSMNV  156 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEECCTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHH--HcCCeEEEEeCCCCCCH
Confidence            467899999876422111   000     00122335667999987543222333333222  24568899999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      ++++++|...+
T Consensus       157 ~~l~~~i~~~~  167 (170)
T 1r2q_A          157 NEIFMAIAKKL  167 (170)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHHH
Confidence            99999987643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.92  E-value=5.5e-10  Score=90.83  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             CCcEEEEeCCCCCCchh----hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC-------CCCeEEEEeccCC
Q 023354          193 DYIIYIIDVSGGDKIPR----KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRD-------GGPFIFAQVKHGL  261 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~----~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~-------~~~i~~isa~~g~  261 (283)
                      +..++++|.+.......    .........-.+|+||.|+...  .. +.+...+.....       ..+++++||++|.
T Consensus        80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  156 (178)
T 2lkc_A           80 DIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEA--NP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE  156 (178)
T ss_dssp             CEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS--CH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred             CEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC--CH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence            56788999776421110    0000113445899999998754  22 222222221111       1478999999999


Q ss_pred             CHHHHHHHHHHHHHHhh
Q 023354          262 GVEEIVNHILQAWEAST  278 (283)
Q Consensus       262 gi~~l~~~l~~~~~~~~  278 (283)
                      |+++++++|........
T Consensus       157 gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          157 GLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhhhhc
Confidence            99999999998876544

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.92  E-value=1.6e-09  Score=89.63  Aligned_cols=83  Identities=22%  Similarity=0.114  Sum_probs=52.3

Q ss_pred             cCCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|+++|++....+   ....     .......-.+|+||+|+........+.......  ..+.+++.+|++++.|+
T Consensus        98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi  175 (193)
T 2oil_A           98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE--NNGLLFLETSALDSTNV  175 (193)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEEECTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHH--HcCCEEEEEeCCCCCCH
Confidence            4678899998764211   1110     001123458999999997643223333333222  24568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|......
T Consensus       176 ~~l~~~l~~~i~~  188 (193)
T 2oil_A          176 ELAFETVLKEIFA  188 (193)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.91  E-value=2.4e-09  Score=89.78  Aligned_cols=83  Identities=23%  Similarity=0.152  Sum_probs=51.9

Q ss_pred             cCCcEEEEeCCCCCC---chhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC-CeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGG-PFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~-~i~~isa~~g~g  262 (283)
                      ++..|+++|++....   +......     .....-.+|+||.|+........+...+.. +.. +. +++++||+++.|
T Consensus       102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-~~~-~~~~~~~~SA~~g~g  179 (201)
T 2hup_A          102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLA-EHY-DILCAIETSAKDSSN  179 (201)
T ss_dssp             CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHH-HHT-TCSEEEECBTTTTBS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHH-HHc-CCCEEEEEeCCCCCC
Confidence            468899999876421   1111000     012344789999998754222333333322 222 44 889999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWEA  276 (283)
Q Consensus       263 i~~l~~~l~~~~~~  276 (283)
                      +++++++|......
T Consensus       180 i~~l~~~l~~~i~~  193 (201)
T 2hup_A          180 VEEAFLRVATELIM  193 (201)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.91  E-value=6.9e-09  Score=85.75  Aligned_cols=85  Identities=13%  Similarity=0.085  Sum_probs=52.4

Q ss_pred             hcCCcEEEEeCCCCCCch---hh------cCCcccccCEEEEEcCCccccc--CChHHHHhHHHHhhcCCCCeEEEEecc
Q 023354          191 LADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAI--GADLAVMERDALRMRDGGPFIFAQVKH  259 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~---~~------~~~~i~~ad~ivi~K~g~i~~~--g~~~e~~~~~~~~~~~~~~i~~isa~~  259 (283)
                      -++..++++|.+....+.   ..      ........-.++.||+|+....  .-..+.... +.......+++.+||++
T Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~-~~~~~~~~~~~e~Sa~~  163 (184)
T 3ihw_A           85 WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK-LSTDLKRCTYYETCATY  163 (184)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHH-HHHHTTTCEEEEEBTTT
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHH-HHHHcCCCeEEEecCCC
Confidence            357889999987642111   11      0001123447889999985221  112222222 33334457899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWEA  276 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~~  276 (283)
                      |.|++++++++......
T Consensus       164 ~~gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          164 GLNVERVFQDVAQKVVA  180 (184)
T ss_dssp             TBTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999876644

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.91  E-value=8.2e-10  Score=99.15  Aligned_cols=160  Identities=17%  Similarity=0.104  Sum_probs=83.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCch--HHHHHhCCCCCCChHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER--IRAVETGGCPHAAIREDISI  157 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~--~~~i~~~g~~~~~~~~~~~~  157 (283)
                      ++.+|+|+|++|||||||+|.|+|.     ++.+....+.++..    +..|++++..  ..+++++|...    ...  
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~-----~~~i~s~~~~tTr~----~~~gi~~~~~~~i~~iDTpG~~~----~~~--   71 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ-----KISITSRKAQTTRH----RIVGIHTEGAYQAIYVDTPGLHM----EEK--   71 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC-----SEEECCCCSSCCSS----CEEEEEEETTEEEEEESSSSCCH----HHH--
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC-----CccccCCCCCccee----eEEEEEEECCeeEEEEECcCCCc----cch--
Confidence            4568999999999999999999995     23333322322211    2234444322  23445555420    000  


Q ss_pred             HHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhh-c---CCcccccCEEEEEcCCcccccC
Q 023354          158 NLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRK-G---GPGITQADLLVINKTDLASAIG  233 (283)
Q Consensus       158 ~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~-~---~~~i~~ad~ivi~K~g~i~~~g  233 (283)
                        ..+....... ...              +...++..++++|++. ..-..+ .   ......+..+++||.|+.....
T Consensus        72 --~~l~~~~~~~-~~~--------------~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~  133 (301)
T 1ega_A           72 --RAINRLMNKA-ASS--------------SIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKA  133 (301)
T ss_dssp             --HHHHHHHTCC-TTS--------------CCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHH
T ss_pred             --hhHHHHHHHH-HHH--------------HHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHH
Confidence              0111000000 000              0011346788899765 221111 0   0011346689999999864100


Q ss_pred             ChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          234 ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       234 ~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      ...+.+ ..+.+.....+++++|++++.|++++++++...
T Consensus       134 ~~~~~l-~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~  172 (301)
T 1ega_A          134 DLLPHL-QFLASQMNFLDIVPISAETGLNVDTIAAIVRKH  172 (301)
T ss_dssp             HHHHHH-HHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTT
T ss_pred             HHHHHH-HHHHHhcCcCceEEEECCCCCCHHHHHHHHHHh
Confidence            111111 222233333468999999999999999998864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.91  E-value=2.1e-10  Score=93.55  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=40.1

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~  118 (283)
                      +++.++|.. +|++++|+||||||||||+++|+|++ |. |.|.+.+.++
T Consensus        22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i   70 (158)
T 1htw_A           22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL   70 (158)
T ss_dssp             HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred             HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence            566777774 59999999999999999999999999 76 9988776655

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.91  E-value=3.2e-09  Score=86.66  Aligned_cols=85  Identities=13%  Similarity=0.116  Sum_probs=54.0

Q ss_pred             hcCCcEEEEeCCCCCCch---hh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~---~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      -++..++++|++....+.   ..      ........-.+|+||+|+........+........  .+.+++++|++++.
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~  166 (187)
T 2a9k_A           89 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ--WNVNYVETSAKTRA  166 (187)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH--cCCeEEEeCCCCCC
Confidence            357889999987642111   10      00001234489999999876433333333333322  35689999999999


Q ss_pred             CHHHHHHHHHHHHHHh
Q 023354          262 GVEEIVNHILQAWEAS  277 (283)
Q Consensus       262 gi~~l~~~l~~~~~~~  277 (283)
                      |+++++++|.......
T Consensus       167 gi~~l~~~l~~~i~~~  182 (187)
T 2a9k_A          167 NVDKVFFDLMREIRAR  182 (187)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999998876543

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.91  E-value=6.9e-10  Score=105.78  Aligned_cols=79  Identities=23%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             cCCcEEEEeCCCCCCch---h---hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          192 ADYIIYIIDVSGGDKIP---R---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~---~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      ++.+|+|+|++......   .   .....-.....+|+||+|+....  ..+.  +.+.+. ...+++.+||++|.|+++
T Consensus       313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~--~~~~--~~l~~~-~~~~~i~vSAktg~GI~e  387 (476)
T 3gee_A          313 ADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANA--DALI--RAIADG-TGTEVIGISALNGDGIDT  387 (476)
T ss_dssp             CSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTT--HHHH--HHHHHH-HTSCEEECBTTTTBSHHH
T ss_pred             CCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCcc--chhH--HHHHhc-CCCceEEEEECCCCCHHH
Confidence            35789999988764331   0   00000134568999999987652  2221  222222 236899999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          266 IVNHILQAWE  275 (283)
Q Consensus       266 l~~~l~~~~~  275 (283)
                      ++++|.+.+.
T Consensus       388 L~~~i~~~~~  397 (476)
T 3gee_A          388 LKQHMGDLVK  397 (476)
T ss_dssp             HHHHHTHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988776

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.91  E-value=1.9e-09  Score=89.38  Aligned_cols=82  Identities=16%  Similarity=0.112  Sum_probs=52.1

Q ss_pred             cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....+.   ....     ..-...-.+|+||+|+........+...+....  .+.+++++|++++.|+
T Consensus        96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~gi  173 (192)
T 2fg5_A           96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES--IGAIVVETSAKNAINI  173 (192)
T ss_dssp             CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT--TTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH--cCCEEEEEeCCCCcCH
Confidence            46789999987653211   1000     001234478999999975432333333333322  3578999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      ++++++|.....
T Consensus       174 ~~l~~~l~~~i~  185 (192)
T 2fg5_A          174 EELFQGISRQIP  185 (192)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.91  E-value=8.7e-10  Score=89.57  Aligned_cols=81  Identities=11%  Similarity=0.089  Sum_probs=51.3

Q ss_pred             CCcEEEEeCCCCCC---chhhc-------C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          193 DYIIYIIDVSGGDK---IPRKG-------G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~~~~-------~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      +..++++|.+....   +....       .  ......-.+++||+|+.... ...+...+ +.......+++++|+++|
T Consensus        81 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~-~~~~~~~~~~~~~Sa~~~  158 (177)
T 1wms_A           81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEEAQA-WCRDNGDYPYFETSAKDA  158 (177)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHHHHH-HHHHTTCCCEEECCTTTC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHHHHH-HHHhcCCceEEEEeCCCC
Confidence            57888999876421   11100       0  00123458999999987322 22333333 223355678999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~  275 (283)
                      .|++++++++.....
T Consensus       159 ~gi~~l~~~l~~~~~  173 (177)
T 1wms_A          159 TNVAAAFEEAVRRVL  173 (177)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999987654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.91  E-value=3e-09  Score=86.24  Aligned_cols=81  Identities=19%  Similarity=0.152  Sum_probs=51.6

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....   +.....     ......-.+|+||+|+........+...+....  .+.+++++|++++.|+
T Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi  165 (179)
T 1z0f_A           88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE--NGLLFLEASAKTGENV  165 (179)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCTTH
T ss_pred             CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence            468899999876421   111000     001233489999999875433333333333322  3568999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      ++++++|....
T Consensus       166 ~~l~~~l~~~i  176 (179)
T 1z0f_A          166 EDAFLEAAKKI  176 (179)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.90  E-value=1.1e-09  Score=92.14  Aligned_cols=83  Identities=18%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|.+....   +.....     ......-.+|+||+|+........+........  .+.+++++||++|.|+
T Consensus        99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~g~gv  176 (201)
T 2ew1_A           99 ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA--QDMYYLETSAKESDNV  176 (201)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH--HTCCEEECCTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence            357899999876421   111100     001233478899999875432233333332222  3468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|......
T Consensus       177 ~~l~~~l~~~i~~  189 (201)
T 2ew1_A          177 EKLFLDLACRLIS  189 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.90  E-value=2.9e-09  Score=88.41  Aligned_cols=84  Identities=23%  Similarity=0.184  Sum_probs=53.5

Q ss_pred             hcCCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          191 LADYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      -++.+|+++|.+....+   .....     ..-...-.||+||+|+.....-..+.... +.+...+.+++.+|+++|.|
T Consensus        98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~~SA~~g~g  176 (192)
T 2il1_A           98 SAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEK-FAQQITGMRFCEASAKDNFN  176 (192)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHTSTTCEEEECBTTTTBS
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHH-HHHhcCCCeEEEEeCCCCCC
Confidence            35788999998774221   11100     00123458999999987543222333322 33333467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWE  275 (283)
Q Consensus       263 i~~l~~~l~~~~~  275 (283)
                      +++++++|.....
T Consensus       177 i~~l~~~l~~~i~  189 (192)
T 2il1_A          177 VDEIFLKLVDDIL  189 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.90  E-value=5.4e-10  Score=91.14  Aligned_cols=83  Identities=22%  Similarity=0.144  Sum_probs=51.6

Q ss_pred             cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....+.   ....     ..-...-.+++||.|+........+........  .+.+++++|+++|.|+
T Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi  162 (181)
T 2efe_B           85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE--NGLFFMETSAKTATNV  162 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH--TTCEEEECCSSSCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH--cCCEEEEEECCCCCCH
Confidence            46789999987642211   1000     001233478999999875432233333333222  4568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|...+..
T Consensus       163 ~~l~~~l~~~~~~  175 (181)
T 2efe_B          163 KEIFYEIARRLPR  175 (181)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.89  E-value=1.8e-09  Score=99.51  Aligned_cols=82  Identities=18%  Similarity=0.147  Sum_probs=48.6

Q ss_pred             cCCcEEEEeCCCCCC-ch----------hhcCCcccccCEEEEEcCCcccccCChHH---HHhHHHHhh-cCCCCeEEEE
Q 023354          192 ADYIIYIIDVSGGDK-IP----------RKGGPGITQADLLVINKTDLASAIGADLA---VMERDALRM-RDGGPFIFAQ  256 (283)
Q Consensus       192 ~~~~l~llDpt~g~~-l~----------~~~~~~i~~ad~ivi~K~g~i~~~g~~~e---~~~~~~~~~-~~~~~i~~is  256 (283)
                      ++.+++++|.+.... ..          .... .....-.+|.||.|++..  ...+   .+....... .+..+++++|
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIG-VSGKPILVTLNKIDKING--DLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-CCSCCEEEEEECGGGCCS--CHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-cCCCCEEEEEECCCCCCc--hHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            466788888765420 10          0100 013345889999998643  2222   111111222 2234678999


Q ss_pred             eccCCCHHHHHHHHHHHHHH
Q 023354          257 VKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       257 a~~g~gi~~l~~~l~~~~~~  276 (283)
                      ++++.|+++++++|.+.+..
T Consensus       335 A~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhcc
Confidence            99999999999999886643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.89  E-value=1.8e-09  Score=90.41  Aligned_cols=82  Identities=17%  Similarity=0.092  Sum_probs=51.6

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|+++|++....   +.....     ..-...-.+|+||+|+........+.......  ..+.+++++||++|.|+
T Consensus        98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~SA~~g~gi  175 (200)
T 2o52_A           98 AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ--ENELMFLETSALTGENV  175 (200)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEEECTTTCTTH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHH--HcCCEEEEEeCCCCCCH
Confidence            468899999876421   111100     00123448999999987543222222222222  24578999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      ++++++|.....
T Consensus       176 ~~l~~~l~~~i~  187 (200)
T 2o52_A          176 EEAFLKCARTIL  187 (200)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.89  E-value=8e-10  Score=89.87  Aligned_cols=84  Identities=19%  Similarity=0.087  Sum_probs=52.9

Q ss_pred             cCCcEEEEeCCCCCCchh---hcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      ++..++++|++....+..   ...    ..-..+-.+|+||+|+........+........  .+.+++.+|+++|.|++
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~  159 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQ--MGIQLFETSAKENVNVE  159 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCCEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHH--cCCeEEEEECCCCCCHH
Confidence            357899999877422111   000    000234489999999876533333333322222  24689999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 023354          265 EIVNHILQAWEAS  277 (283)
Q Consensus       265 ~l~~~l~~~~~~~  277 (283)
                      +++++|.......
T Consensus       160 ~l~~~l~~~~~~~  172 (181)
T 3tw8_B          160 EMFNCITELVLRA  172 (181)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.89  E-value=1.6e-09  Score=90.41  Aligned_cols=82  Identities=24%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccc------cCChHHHHhHHHHhhcCCCCeEEEEe
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASA------IGADLAVMERDALRMRDGGPFIFAQV  257 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~------~g~~~e~~~~~~~~~~~~~~i~~isa  257 (283)
                      ++..|+++|++....   +.....     ..-...-.+|+||.|+...      ..-..+........  .+.+++++||
T Consensus       101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~SA  178 (199)
T 2p5s_A          101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT--YGALFCETSA  178 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH--HTCEEEECCT
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHH--cCCeEEEeeC
Confidence            578999999876421   111100     0012345899999998632      11122222222222  2568999999


Q ss_pred             ccCCCHHHHHHHHHHHHH
Q 023354          258 KHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       258 ~~g~gi~~l~~~l~~~~~  275 (283)
                      ++|.|+++++++|.....
T Consensus       179 ~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          179 KDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             TTCTTHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999987653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.88  E-value=4.7e-09  Score=85.86  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEec-cCC
Q 023354          192 ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVK-HGL  261 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~-~g~  261 (283)
                      ++..++++|.+...   .+....      ......+-.+|+||.|+........+.........  +.+++++|++ ++.
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~  167 (183)
T 3kkq_A           90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY--NIPYIETSAKDPPL  167 (183)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH--TCCEEEEBCSSSCB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHh--CCeEEEeccCCCCC
Confidence            57889999987642   111110      00112345899999998754333334333333332  4789999999 999


Q ss_pred             CHHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAWE  275 (283)
Q Consensus       262 gi~~l~~~l~~~~~  275 (283)
                      |+++++++|.+.+.
T Consensus       168 ~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          168 NVDKTFHDLVRVIR  181 (183)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999987664

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.88  E-value=1.4e-09  Score=97.71  Aligned_cols=79  Identities=14%  Similarity=0.074  Sum_probs=50.6

Q ss_pred             cCCcEEEEeCCCCCCchhhc----CCcc--cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG----GPGI--TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~----~~~i--~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      +|.+++++|++.+.......    ....  ..+-.+++||+|+....  . + +.+.+....+..+++++||++|.|+++
T Consensus        87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~--~-~-~~~~~~~~~~~~~~~~iSA~~g~gv~~  162 (301)
T 1wf3_A           87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP--E-E-AMKAYHELLPEAEPRMLSALDERQVAE  162 (301)
T ss_dssp             CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH--H-H-HHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch--H-H-HHHHHHHhcCcCcEEEEeCCCCCCHHH
Confidence            46889999988753221110    0011  34568999999987431  1 1 222233334456789999999999999


Q ss_pred             HHHHHHHHH
Q 023354          266 IVNHILQAW  274 (283)
Q Consensus       266 l~~~l~~~~  274 (283)
                      +++++....
T Consensus       163 l~~~l~~~l  171 (301)
T 1wf3_A          163 LKADLLALM  171 (301)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhc
Confidence            999997643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.88  E-value=9e-10  Score=91.13  Aligned_cols=82  Identities=17%  Similarity=0.122  Sum_probs=50.5

Q ss_pred             cCCcEEEEeCCCCCCchh---h---c-CC--cccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR---K---G-GP--GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~---~-~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~  259 (283)
                      ++.+++++|.+....+..   .   . ..  .....-.+|+||+|+....  ..+.+...+...   ....+++++||++
T Consensus        91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~  168 (188)
T 1zd9_A           91 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKE  168 (188)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence            467899999876432211   0   0 00  1133458999999987542  222222222111   1345789999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWE  275 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~  275 (283)
                      |.|+++++++|...+.
T Consensus       169 g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          169 KDNIDITLQWLIQHSK  184 (188)
T ss_dssp             CTTHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999987654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.87  E-value=2.7e-09  Score=86.63  Aligned_cols=84  Identities=15%  Similarity=0.091  Sum_probs=53.4

Q ss_pred             cCCcEEEEeCCCCCCc---hhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   ....      .......-.+|+||.|+.....-..+......  ...+.+++++|+++|.|
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~--~~~~~~~~~~Sa~~~~g  158 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFG--ASHHVAYFEASAKLRLN  158 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHH--HHTTCEEEECBTTTTBS
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH--HHcCCeEEEecCCCCCC
Confidence            5788999998764211   1100      00112345899999998764322233332222  22466899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 023354          263 VEEIVNHILQAWEAS  277 (283)
Q Consensus       263 i~~l~~~l~~~~~~~  277 (283)
                      +++++++|.......
T Consensus       159 v~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          159 VDEAFEQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998877544

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.87  E-value=5.7e-09  Score=85.95  Aligned_cols=81  Identities=20%  Similarity=0.230  Sum_probs=51.6

Q ss_pred             cCCcEEEEeCCCCC---------Cchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCC-CeEEEEe
Q 023354          192 ADYIIYIIDVSGGD---------KIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGG-PFIFAQV  257 (283)
Q Consensus       192 ~~~~l~llDpt~g~---------~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~-~i~~isa  257 (283)
                      ++..|+++|++...         .+....    ...-..+-.+|+||.|+...  ...+...+. .+. .+. +++++||
T Consensus        98 ~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-~~~-~~~~~~~~~Sa  173 (198)
T 3t1o_A           98 VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEMVRAV-VDP-EGKFPVLEAVA  173 (198)
T ss_dssp             CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHHHHHH-HCT-TCCSCEEECBG
T ss_pred             CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHHHHHH-HHh-cCCceEEEEec
Confidence            46789999987431         111110    01113345899999998654  333333332 222 344 8999999


Q ss_pred             ccCCCHHHHHHHHHHHHHH
Q 023354          258 KHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       258 ~~g~gi~~l~~~l~~~~~~  276 (283)
                      ++|.|+++++++|......
T Consensus       174 ~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          174 TEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             GGTBTHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999876644

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.87  E-value=1.2e-09  Score=104.33  Aligned_cols=159  Identities=22%  Similarity=0.202  Sum_probs=85.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC-CCChHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP-HAAIREDISIN  158 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~-~~~~~~~~~~~  158 (283)
                      ++..|+|+|++|+|||||+|.|++...+.     ......++.+.. ...+- +...+..+++++|.. ...        
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~-----vs~~~gTT~d~~-~~~i~-~~g~~~~l~DTaG~~~~~~--------  306 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAI-----VTDIPGTTRDVI-SEEIV-IRGILFRIVDTAGVRSETN--------  306 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCC-----CCCSSCCSSCSC-CEEEE-ETTEEEEEEESSCCCSSCC--------
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCc-----cCCCCCeeeeeE-EEEEe-cCCeEEEEEECCCccccch--------
Confidence            35789999999999999999999963211     111111111100 00000 001112344555542 100        


Q ss_pred             HHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhc-CCc-ccccCEEEEEcCCcccccCChH
Q 023354          159 LGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG-GPG-ITQADLLVINKTDLASAIGADL  236 (283)
Q Consensus       159 ~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~-~~~-i~~ad~ivi~K~g~i~~~g~~~  236 (283)
                                   +  ..|.-|.+ +..-...-++.+|+|+|++......... ... -...-.+|+||+|+...  ...
T Consensus       307 -------------~--~ve~~gi~-~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~--~~~  368 (482)
T 1xzp_A          307 -------------D--LVERLGIE-RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK--INE  368 (482)
T ss_dssp             -------------T--TCCCCCHH-HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC--CCH
T ss_pred             -------------h--hHHHHHHH-HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccc--cCH
Confidence                         0  01112211 2122233468899999987764322110 000 12345899999998643  122


Q ss_pred             HHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          237 AVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       237 e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      +.+.+.   .....+++++||++|.|+++++++|.+.+
T Consensus       369 ~~~~~~---~~~~~~~i~iSAktg~Gi~eL~~~l~~~~  403 (482)
T 1xzp_A          369 EEIKNK---LGTDRHMVKISALKGEGLEKLEESIYRET  403 (482)
T ss_dssp             HHHHHH---HTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred             HHHHHH---hcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            222221   11236899999999999999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.87  E-value=2.3e-09  Score=88.83  Aligned_cols=84  Identities=19%  Similarity=0.091  Sum_probs=53.7

Q ss_pred             cCCcEEEEeCCCCCCchh---hc----CC-c--------ccccCEEEEEcCCcccccCChHHHHhHHH-Hh---hcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG----GP-G--------ITQADLLVINKTDLASAIGADLAVMERDA-LR---MRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~----~~-~--------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~-~~---~~~~~~  251 (283)
                      ++.+|+++|++....+..   ..    .. .        -...-.||+||+|+....  ..+.+...+ ..   .....+
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~  164 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFV  164 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEE
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeE
Confidence            367899999887532211   00    00 0        034558999999987652  223232222 11   224568


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      ++.+|+++|.|+++++++|...+...
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          165 IFASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEeeCCCccCHHHHHHHHHHHHHHH
Confidence            89999999999999999998877544

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.87  E-value=2.4e-09  Score=88.69  Aligned_cols=83  Identities=19%  Similarity=0.111  Sum_probs=51.8

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|+++|++....   +.....     ..-...-.+|+||+|+........+........  .+.+++++|++++.|+
T Consensus        94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~gi  171 (191)
T 2a5j_A           94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE--HGLIFMETSAKTACNV  171 (191)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEEECTTTCTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence            467899999876421   111100     001233488999999875432233333333222  2468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|......
T Consensus       172 ~~l~~~l~~~i~~  184 (191)
T 2a5j_A          172 EEAFINTAKEIYR  184 (191)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999776543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.86  E-value=1.9e-09  Score=88.35  Aligned_cols=82  Identities=16%  Similarity=0.073  Sum_probs=51.3

Q ss_pred             CCcEEEEeCCCCCC---chhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDK---IPRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..++++|++....   +....     .......-.+++||+|+........+.......  ..+.+++.+|+++|.|++
T Consensus        84 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~gi~  161 (186)
T 2bme_A           84 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ--ENELMFLETSALTGENVE  161 (186)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHH--HcCCEEEEecCCCCCCHH
Confidence            57899999876421   11110     001123458999999987543222232222222  245789999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          265 EIVNHILQAWEA  276 (283)
Q Consensus       265 ~l~~~l~~~~~~  276 (283)
                      ++++++......
T Consensus       162 ~l~~~l~~~~~~  173 (186)
T 2bme_A          162 EAFVQCARKILN  173 (186)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.86  E-value=8.9e-09  Score=82.45  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=52.4

Q ss_pred             cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+...   .+....      ...-..+-.+++||.|+........+.... ..+..+..+++++|+++|.|
T Consensus        75 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~g  153 (167)
T 1c1y_A           75 GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LARQWCNCAFLESSAKSKIN  153 (167)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHHTTSCEEEECBTTTTBS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH-HHHHccCCcEEEecCCCCCC
Confidence            57888999977632   111100      001123458999999997643223333333 23334467899999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAW  274 (283)
Q Consensus       263 i~~l~~~l~~~~  274 (283)
                      +++++++|....
T Consensus       154 i~~l~~~l~~~i  165 (167)
T 1c1y_A          154 VNEIFYDLVRQI  165 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999997654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.85  E-value=2.5e-09  Score=85.97  Aligned_cols=82  Identities=26%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....   +.....     ..-...-.+++||+|+.... ...+........  .+.+++++|+++|.|+
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~gv  152 (170)
T 1g16_A           76 AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKE--LGIPFIESSAKNDDNV  152 (170)
T ss_dssp             EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHHHHHHHHHH--HTCCEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-cCHHHHHHHHHH--cCCeEEEEECCCCCCH
Confidence            357899999876421   111100     00123448999999984322 222333322222  2468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|.....+
T Consensus       153 ~~l~~~l~~~~~~  165 (170)
T 1g16_A          153 NEIFFTLAKLIQE  165 (170)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.85  E-value=1.2e-08  Score=83.91  Aligned_cols=82  Identities=21%  Similarity=0.194  Sum_probs=51.4

Q ss_pred             CCcEEEEeCCCCCC---chhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          193 DYIIYIIDVSGGDK---IPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      +..++++|.+....   +...      ....-...-.+|+||+|+.... ...+...+....  .+.+++.+|++++.|+
T Consensus        94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi  170 (190)
T 3con_A           94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-VDTKQAHELAKS--YGIPFIETSAKTRQGV  170 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHHHHHHHHHH--HTCCEEECCTTTCTTH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc-CCHHHHHHHHHH--cCCeEEEEeCCCCCCH
Confidence            57888999776421   1110      0000123458999999987532 222333333222  2458999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 023354          264 EEIVNHILQAWEAS  277 (283)
Q Consensus       264 ~~l~~~l~~~~~~~  277 (283)
                      ++++++|...+...
T Consensus       171 ~~l~~~l~~~~~~~  184 (190)
T 3con_A          171 EDAFYTLVREIRQY  184 (190)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.85  E-value=2.9e-09  Score=100.26  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=50.9

Q ss_pred             HHHhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          188 SRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       188 a~al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      +..-++.+|+++|++.+.......    .......-.+++||+|........    .+ ..+ ....+++.+||++|.|+
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~----~~-~~~-lg~~~~~~iSA~~g~gv  152 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANI----YD-FYS-LGFGEPYPISGTHGLGL  152 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CC----CS-SGG-GSSCCCEECBTTTTBTH
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhH----HH-HHH-cCCCCeEEEeCcCCCCh
Confidence            334568899999988764322110    011234558999999986432111    11 111 12237899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      +++++++...++.
T Consensus       153 ~~L~~~i~~~l~~  165 (436)
T 2hjg_A          153 GDLLDAVAEHFKN  165 (436)
T ss_dssp             HHHHHHHHHTGGG
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999887753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.85  E-value=1.5e-09  Score=86.59  Aligned_cols=77  Identities=17%  Similarity=0.136  Sum_probs=48.6

Q ss_pred             cCCcEEEEeCCCCCCchh-hcC---CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPR-KGG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV  267 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~-~~~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~  267 (283)
                      ++..++++|++....... ...   .....+-.+|+||+|+....    +...+. . .....+++++|+++|.|+++++
T Consensus        80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~~-~-~~~~~~~~~~Sa~~~~gv~~l~  153 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE----LYLGPL-Y-GLGFGDPIPTSSEHARGLEELL  153 (161)
T ss_dssp             CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG----GGCGGG-G-GGSSCSCEECBTTTTBSHHHHH
T ss_pred             CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch----HhHHHH-H-hCCCCCeEEEecccCCChHHHH
Confidence            357899999877532211 100   00134458999999987542    111111 1 2223378999999999999999


Q ss_pred             HHHHHHH
Q 023354          268 NHILQAW  274 (283)
Q Consensus       268 ~~l~~~~  274 (283)
                      +++.+.+
T Consensus       154 ~~l~~~l  160 (161)
T 2dyk_A          154 EAIWERL  160 (161)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9987653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.85  E-value=6.4e-09  Score=85.65  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             cCCcEEEEeCCCCCCchh---h---c-CC--cccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR---K---G-GP--GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~---~-~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~  259 (283)
                      ++..++++|++....+..   .   . ..  .....-.+|+||.|+...  ...+.+.+.+...   ..+.+++++||++
T Consensus        84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  161 (187)
T 1zj6_A           84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT  161 (187)
T ss_dssp             CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence            468899999887643221   0   0 00  113345899999998753  2233333322211   1345789999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWE  275 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~  275 (283)
                      |.|+++++++|.+...
T Consensus       162 g~gi~~l~~~l~~~~~  177 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRLK  177 (187)
T ss_dssp             TBTHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999987664

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.85  E-value=4.1e-09  Score=86.55  Aligned_cols=82  Identities=13%  Similarity=0.099  Sum_probs=51.5

Q ss_pred             CCcEEEEeCCCCCCchh---hc----CC--cccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccC
Q 023354          193 DYIIYIIDVSGGDKIPR---KG----GP--GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHG  260 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~---~~----~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g  260 (283)
                      +..++++|.+....+..   ..    ..  ....+-.+|+||.|+...  ...+.+.+.+...   ....+++++|+++|
T Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  164 (186)
T 1ksh_A           87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTG  164 (186)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCC
Confidence            57899999876532211   00    00  112345899999998764  2223332222111   23457899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWEA  276 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~~  276 (283)
                      .|+++++++|.....+
T Consensus       165 ~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          165 EDLLPGIDWLLDDISS  180 (186)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999876643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.85  E-value=1.3e-08  Score=84.42  Aligned_cols=85  Identities=15%  Similarity=0.108  Sum_probs=53.5

Q ss_pred             hcCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      -++..++++|++...   .+....      ......+-.+|+||.|+........+........  .+.+++++|+++|.
T Consensus        98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~g~  175 (196)
T 2atv_A           98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE--LACAFYECSACTGE  175 (196)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTSEEEECCTTTCT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHH--hCCeEEEECCCcCC
Confidence            357889999987632   111100      0011234589999999876432233333332222  25689999999999


Q ss_pred             -CHHHHHHHHHHHHHHh
Q 023354          262 -GVEEIVNHILQAWEAS  277 (283)
Q Consensus       262 -gi~~l~~~l~~~~~~~  277 (283)
                       |+++++++|.......
T Consensus       176 ~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          176 GNITEIFYELCREVRRR  192 (196)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhh
Confidence             9999999998876543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.84  E-value=7.8e-09  Score=84.61  Aligned_cols=82  Identities=20%  Similarity=0.201  Sum_probs=51.8

Q ss_pred             cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   ...      .......+-.+|+||.|+.... ...+........  .+.+++++|+++|.|
T Consensus        76 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~g~g  152 (189)
T 4dsu_A           76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-VDTKQAQDLARS--YGIPFIETSAKTRQG  152 (189)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-SCHHHHHHHHHH--HTCCEEECCTTTCTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-cCHHHHHHHHHH--cCCeEEEEeCCCCCC
Confidence            5788999998764211   110      0011123458999999987442 222333332222  246899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWEA  276 (283)
Q Consensus       263 i~~l~~~l~~~~~~  276 (283)
                      +++++++|...+..
T Consensus       153 i~~l~~~l~~~~~~  166 (189)
T 4dsu_A          153 VDDAFYTLVREIRK  166 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887643

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.84  E-value=9.4e-11  Score=103.43  Aligned_cols=82  Identities=29%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             cCCcEEEEeCCCCCCchhhcC--Cccc-ccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKGG--PGIT-QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN  268 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~~--~~i~-~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~  268 (283)
                      ++.+++++|+++.........  .... .+..+++||.|+....+...+  ...+.+ ..+.|++++|+++|.|++++++
T Consensus        82 ~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~--~~~l~~-~lg~~~~~~Sa~~g~gi~~l~~  158 (271)
T 3k53_A           82 ADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKID--IKKMRK-ELGVPVIPTNAKKGEGVEELKR  158 (271)
T ss_dssp             CSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCC--HHHHHH-HHSSCEEECBGGGTBTHHHHHH
T ss_pred             CcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHH--HHHHHH-HcCCcEEEEEeCCCCCHHHHHH
Confidence            467889999877521110000  0012 456899999997654332221  112222 2357899999999999999999


Q ss_pred             HHHHHHHH
Q 023354          269 HILQAWEA  276 (283)
Q Consensus       269 ~l~~~~~~  276 (283)
                      ++......
T Consensus       159 ~i~~~~~~  166 (271)
T 3k53_A          159 MIALMAEG  166 (271)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99887653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.84  E-value=2.6e-09  Score=88.23  Aligned_cols=83  Identities=18%  Similarity=0.119  Sum_probs=52.2

Q ss_pred             cCCcEEEEeCCCCCC---chhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....   +......     .-...-.+|+||+|+........+...+....  .+.+++++|+++|.|+
T Consensus        95 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A           95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD--LGFEFFEASAKENINV  172 (189)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHH--cCCeEEEEECCCCCCH
Confidence            357889999876421   1111000     01234489999999876432233333333222  2468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|.....+
T Consensus       173 ~~l~~~l~~~i~~  185 (189)
T 2gf9_A          173 KQVFERLVDVICE  185 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999877654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.84  E-value=7.8e-09  Score=86.15  Aligned_cols=82  Identities=18%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             cCCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|+++|.+....+   .....     ..-...-.+|+||+|+........+........  .+.+++.+|+++|.|+
T Consensus        81 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi  158 (203)
T 1zbd_A           81 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINV  158 (203)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH--HTCEEEECBTTTTBSS
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHH--CCCeEEEEECCCCCCH
Confidence            3678999998764221   11000     001234589999999875432233333332222  2468999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      ++++++|.....
T Consensus       159 ~~l~~~l~~~i~  170 (203)
T 1zbd_A          159 KQTFERLVDVIC  170 (203)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.83  E-value=1.5e-09  Score=90.88  Aligned_cols=83  Identities=22%  Similarity=0.161  Sum_probs=52.3

Q ss_pred             cCCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++.+|+++|++....+.   ....     ..-...-.+|+||.|+........+.......  ..+.+++++|+++|.|+
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gi  158 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD--ANKMPFLETSALDSTNV  158 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH--HTTCCEEECCTTTCTTH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHH--HcCCeEEEEeCCCCCCH
Confidence            35789999987742211   1000     00123348999999997543223333333222  24578999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|......
T Consensus       159 ~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          159 EDAFLTMARQIKE  171 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876643

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.83  E-value=3e-09  Score=101.01  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=51.0

Q ss_pred             cCCcEEEEeCCCCCCchhh-cCCc-ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRK-GGPG-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~-~~~~-i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      +|.+++++|++........ .... -.....+|+||+|+.......      .+.......+++.+|+++|.|+++++++
T Consensus       304 aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~------~~~~~~~~~~~i~iSAktg~Gi~eL~~~  377 (462)
T 3geh_A          304 ADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLIT------SLEYPENITQIVHTAAAQKQGIDSLETA  377 (462)
T ss_dssp             CSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGST------TCCCCTTCCCEEEEBTTTTBSHHHHHHH
T ss_pred             CCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhH------HHHHhccCCcEEEEECCCCCCHHHHHHH
Confidence            3578999998875332111 0000 123568999999987552111      1111123568999999999999999999


Q ss_pred             HHHHHHH
Q 023354          270 ILQAWEA  276 (283)
Q Consensus       270 l~~~~~~  276 (283)
                      |.+.+..
T Consensus       378 i~~~~~~  384 (462)
T 3geh_A          378 ILEIVQT  384 (462)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            9887653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.83  E-value=7.2e-10  Score=89.01  Aligned_cols=81  Identities=21%  Similarity=0.117  Sum_probs=51.4

Q ss_pred             cCCcEEEEeCCCCC---CchhhcCCc----ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          192 ADYIIYIIDVSGGD---KIPRKGGPG----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~~~~----i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      ++..++++|++...   .+.......    ...+-.+|+||.|+........+........  .+.+++++|++++.|++
T Consensus        78 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~  155 (168)
T 1z2a_A           78 AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKR--LKLRFYRTSVKEDLNVS  155 (168)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHH--HTCEEEECBTTTTBSSH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHH--cCCeEEEEecCCCCCHH
Confidence            46789999987642   111110000    1345589999999876432223333332222  24689999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          265 EIVNHILQAW  274 (283)
Q Consensus       265 ~l~~~l~~~~  274 (283)
                      +++++|....
T Consensus       156 ~l~~~l~~~~  165 (168)
T 1z2a_A          156 EVFKYLAEKH  165 (168)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999997654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.83  E-value=4e-09  Score=85.48  Aligned_cols=81  Identities=22%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             cCCcEEEEeCCCCCC---chhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|++....   +......     .-...-.+|+||.|+........+........  .+.+++.+|++++.|+
T Consensus        87 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i  164 (179)
T 2y8e_A           87 STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE--LNVMFIETSAKAGYNV  164 (179)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH--HTCEEEEEBTTTTBSH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHH--cCCeEEEEeCCCCCCH
Confidence            467899999876321   1111000     01223489999999875433233333333322  2468999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      ++++++|...+
T Consensus       165 ~~l~~~l~~~~  175 (179)
T 2y8e_A          165 KQLFRRVAAAL  175 (179)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            99999997654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.83  E-value=2e-09  Score=92.30  Aligned_cols=58  Identities=17%  Similarity=0.077  Sum_probs=43.8

Q ss_pred             cCCCcEEEEEcCCCCcHHHHHHHHHhcccC--C-CcEEEEeecCCCCCHHHHHHhccccCCchHH
Q 023354           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGEFLMRNGALPEERIR  139 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~  139 (283)
                      ..+|++++|+||||||||||+++|+|+++|  . |.|.+.+.++..    ..+..++|+||.+..
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~   73 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDE   73 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHH
Confidence            467999999999999999999999999885  3 777776655432    123468999997643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.82  E-value=3.6e-09  Score=87.29  Aligned_cols=82  Identities=21%  Similarity=0.202  Sum_probs=49.4

Q ss_pred             cCCcEEEEeCCCCC---Cchhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC--
Q 023354          192 ADYIIYIIDVSGGD---KIPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG--  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g--  260 (283)
                      ++..|+++|++...   .+...      ........-.+|+||+|+........+.......  ..+.+++++|++++  
T Consensus        94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~~Sa~~~~~  171 (189)
T 1z06_A           94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD--THSMPLFETSAKNPND  171 (189)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH--HTTCCEEECCSSSGGG
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH--HcCCEEEEEeCCcCCc
Confidence            46889999987642   11111      0001123458999999987543223333332222  24568999999999  


Q ss_pred             -CCHHHHHHHHHHHHH
Q 023354          261 -LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 -~gi~~l~~~l~~~~~  275 (283)
                       .|+++++++|...+.
T Consensus       172 ~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GSCHHHHHHHHC----
T ss_pred             ccCHHHHHHHHHHHHh
Confidence             999999999876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.82  E-value=3.4e-09  Score=85.38  Aligned_cols=83  Identities=17%  Similarity=0.223  Sum_probs=52.0

Q ss_pred             cCCcEEEEeCCCCCCchh---hc----CC--cccccCEEEEEcCCcccccCChHHHHhHHHHh-h--cCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG----GP--GITQADLLVINKTDLASAIGADLAVMERDALR-M--RDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~----~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~--~~~~~i~~isa~~  259 (283)
                      ++..++++|++....+..   ..    ..  .....-.+|+||.|+...  ...+.+...+.. .  ....+++++|+++
T Consensus        75 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (171)
T 1upt_A           75 TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANSLGLPALKDRKWQIFKTSATK  152 (171)
T ss_dssp             CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHHhCchhccCCceEEEECcCCC
Confidence            367899999877543221   10    00  013345899999998754  222333332211 1  1244789999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWEA  276 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~~  276 (283)
                      |.|+++++++|......
T Consensus       153 ~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          153 GTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999877643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.82  E-value=1e-08  Score=91.28  Aligned_cols=59  Identities=8%  Similarity=-0.038  Sum_probs=45.5

Q ss_pred             CCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C-cEEEEeecCCCCCHHHHHHhcc
Q 023354           70 PPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVTNDIFTKEDGEFLMRNG  131 (283)
Q Consensus        70 ~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g-~i~i~~~d~~~~~~~~~~~~ig  131 (283)
                      +.++++++. .+|++++|+||||||||||++.|++.+.+. | .+.+.+.+.   ...++++++.
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~   84 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLI   84 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHH
Confidence            467777776 459999999999999999999999998876 7 787777654   2344444443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.82  E-value=1.9e-09  Score=90.31  Aligned_cols=58  Identities=22%  Similarity=0.151  Sum_probs=41.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRA  140 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~  140 (283)
                      +|++++|+||||||||||+++|+|+++   .+.+.+.+.........+..++|++|++..+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   63 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRF   63 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence            699999999999999999999999864   4555444443322222245688999886533

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.31  E-value=4.4e-10  Score=94.11  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=24.7

Q ss_pred             cccccCCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           74 SRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        74 ~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      ...+..+...|+|+|++|+|||||++.+++
T Consensus        23 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            334445677899999999999999999976

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.81  E-value=6.5e-09  Score=83.22  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=49.7

Q ss_pred             cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh-c--CCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM-R--DGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-~--~~~~i~~isa~~  259 (283)
                      ++..++++|.+....+..   ..    .  ..-..+-.+++||.|+...  ...+.+....... .  ...+++++|+++
T Consensus        68 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  145 (164)
T 1r8s_A           68 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATS  145 (164)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCC
Confidence            357899999876532211   10    0  0012345899999998654  2222222222111 1  234689999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWE  275 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~  275 (283)
                      |.|+++++++|.....
T Consensus       146 ~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          146 GDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             TBTHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999987653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.81  E-value=2.2e-09  Score=89.60  Aligned_cols=82  Identities=16%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             cCCcEEEEeCCCCCC---chhhc-------C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDK---IPRKG-------G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~-------~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~  259 (283)
                      ++..|+++|++....   +....       .  ......-.+|+||.|+.... ...+.... +.......+++.+||++
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~-~~~~~~~~~~~~~Sa~~  158 (207)
T 1vg8_A           81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKRAQA-WCYSKNNIPYFETSAKE  158 (207)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHHHHH-HHHHTTSCCEEECBTTT
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHHHHH-HHHhcCCceEEEEeCCC
Confidence            367899999876421   11100       0  00123458999999987322 22233322 22324567899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWE  275 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~  275 (283)
                      |.|+++++++|.....
T Consensus       159 g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          159 AINVEQAFQTIARNAL  174 (207)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999987653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.81  E-value=6.7e-09  Score=86.67  Aligned_cols=56  Identities=23%  Similarity=0.155  Sum_probs=38.7

Q ss_pred             cCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .-.+++||.|+........+.....  ...+..+++.+|++++.|+++++++|.....
T Consensus       112 ~i~~v~nK~Dl~~~~~~~~~~a~~l--~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          112 VIMLVGNKSDLRHLRAVPTDEARAF--AEKNNLSFIETSALDSTNVEEAFKNILTEIY  167 (199)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHHH--HHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEEECcccccccCcCHHHHHHH--HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3478899999865432232322222  2235677888999999999999999987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.81  E-value=1e-09  Score=90.19  Aligned_cols=83  Identities=20%  Similarity=0.263  Sum_probs=50.0

Q ss_pred             cCCcEEEEeCCCCCCchhhcC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKGG--PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      ++.+++++|+++.........  .....+-.++.||.|+....... +... .+.+. .+.+++++|++++.|+++++++
T Consensus        86 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~-~~~~~-~~~~~~~~Sa~~~~~v~~l~~~  162 (188)
T 2wjg_A           86 PDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE-IDVD-KLEKI-LGVKVVPLSAAKKMGIEELKKA  162 (188)
T ss_dssp             CSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC-CCHH-HHHHH-HTSCEEECBGGGTBSHHHHHHH
T ss_pred             CCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccch-HHHH-HHHHH-hCCCeEEEEecCCCCHHHHHHH
Confidence            467788888775322111000  00123458899999986542211 1111 11222 2468999999999999999999


Q ss_pred             HHHHHHHh
Q 023354          270 ILQAWEAS  277 (283)
Q Consensus       270 l~~~~~~~  277 (283)
                      +.......
T Consensus       163 i~~~~~~~  170 (188)
T 2wjg_A          163 ISIAVKDK  170 (188)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhc
Confidence            98876543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.80  E-value=1.1e-08  Score=84.11  Aligned_cols=81  Identities=19%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             cCCcEEEEeCCCCCCchh---h---cCC---cccccCEEEEEcCCcccccCChHHHHhHHHHh-h--cCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR---K---GGP---GITQADLLVINKTDLASAIGADLAVMERDALR-M--RDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~---~~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~--~~~~~i~~isa~~  259 (283)
                      ++..++++|.+....+..   .   ...   ....+-.++.||+|+....  ..+.+.+.+.. .  ....+++++||++
T Consensus        84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (181)
T 1fzq_A           84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALT  161 (181)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCC
Confidence            467899999876432211   1   000   1123458999999987542  22222222111 1  1234689999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAW  274 (283)
Q Consensus       260 g~gi~~l~~~l~~~~  274 (283)
                      |.|+++++++|....
T Consensus       162 g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          162 GEGVQDGMNWVCKNV  176 (181)
T ss_dssp             CTTHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999997654

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.80  E-value=9.9e-10  Score=97.32  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=49.2

Q ss_pred             cCCcEEEEeCCCCCCchhhc--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      ++.+++++|+++........  ......+-.+++||.|+....+...+ . ..+.+. .+.|++++||++|.|+++++++
T Consensus        81 ~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~-~-~~l~~~-lg~~vi~~SA~~g~gi~el~~~  157 (272)
T 3b1v_A           81 ADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKIN-V-DKLSYH-LGVPVVATSALKQTGVDQVVKK  157 (272)
T ss_dssp             CSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCC-H-HHHHHH-HTSCEEECBTTTTBSHHHHHHH
T ss_pred             CCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHH-H-HHHHHH-cCCCEEEEEccCCCCHHHHHHH
Confidence            45688899987632111100  00013455899999998754332211 1 111111 2568999999999999999999


Q ss_pred             HHHHH
Q 023354          270 ILQAW  274 (283)
Q Consensus       270 l~~~~  274 (283)
                      +....
T Consensus       158 i~~~~  162 (272)
T 3b1v_A          158 AAHTT  162 (272)
T ss_dssp             HHHSC
T ss_pred             HHHHH
Confidence            97754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.80  E-value=1.9e-09  Score=88.05  Aligned_cols=82  Identities=15%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             CCcEEEEeCCCCCCchh---h---cCC---cccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccC
Q 023354          193 DYIIYIIDVSGGDKIPR---K---GGP---GITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHG  260 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~---~---~~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g  260 (283)
                      +..++++|++....+..   .   ...   .....-.+++||.|+...  ...+.+.+.+...   ....+++++|+++|
T Consensus        87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~  164 (183)
T 1moz_A           87 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKG  164 (183)
T ss_dssp             EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            57899999876533221   0   000   123345899999998654  2223332222111   12347899999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWEA  276 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~~  276 (283)
                      .|+++++++|......
T Consensus       165 ~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          165 EGITEGLDWLIDVIKE  180 (183)
T ss_dssp             BTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHh
Confidence            9999999999887654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.80  E-value=1.3e-08  Score=81.03  Aligned_cols=82  Identities=18%  Similarity=0.195  Sum_probs=51.3

Q ss_pred             hcCCcEEEEeCCCCCCch---hh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGDKIP---RK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~---~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      -++..++++|++....+.   ..      ........-.+++||.|+.... ...+...+....  .+.+++.+|++++.
T Consensus        74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~  150 (166)
T 2ce2_X           74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART-VESRQAQDLARS--YGIPYIETSAKTRQ  150 (166)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-SCHHHHHHHHHH--HTCCEEEECTTTCT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-cCHHHHHHHHHH--cCCeEEEecCCCCC
Confidence            357888999987542111   00      0000123458999999987632 222333332222  24689999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAWE  275 (283)
Q Consensus       262 gi~~l~~~l~~~~~  275 (283)
                      |+++++++|.....
T Consensus       151 gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          151 GVEDAFYTLVREIR  164 (166)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999987653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.80  E-value=1.2e-09  Score=95.81  Aligned_cols=78  Identities=18%  Similarity=0.284  Sum_probs=50.6

Q ss_pred             cCCcEEEEeCCCCCC---chhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVN  268 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~  268 (283)
                      ++.+|+++|+++...   +.... ..+..+-.+++||.|.....+.... . ..+.+. .+.|++++||++|.|++++++
T Consensus        84 ~d~vi~VvDas~~~~~~~l~~~l-~~~~~pvilv~NK~Dl~~~~~~~~~-~-~~l~~~-lg~~vi~~SA~~g~gi~el~~  159 (256)
T 3iby_A           84 YDCIINVIDACHLERHLYLTSQL-FELGKPVVVALNMMDIAEHRGISID-T-EKLESL-LGCSVIPIQAHKNIGIPALQQ  159 (256)
T ss_dssp             CSEEEEEEEGGGHHHHHHHHHHH-TTSCSCEEEEEECHHHHHHTTCEEC-H-HHHHHH-HCSCEEECBGGGTBSHHHHHH
T ss_pred             CCEEEEEeeCCCchhHHHHHHHH-HHcCCCEEEEEEChhcCCcCCcHHH-H-HHHHHH-cCCCEEEEECCCCCCHHHHHH
Confidence            467899999876311   11111 1124556899999998765433221 1 122222 257999999999999999999


Q ss_pred             HHHHH
Q 023354          269 HILQA  273 (283)
Q Consensus       269 ~l~~~  273 (283)
                      ++...
T Consensus       160 ~i~~~  164 (256)
T 3iby_A          160 SLLHC  164 (256)
T ss_dssp             HHHTC
T ss_pred             HHHhh
Confidence            99764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.79  E-value=2.2e-08  Score=82.79  Aligned_cols=82  Identities=18%  Similarity=0.118  Sum_probs=51.2

Q ss_pred             hcCCcEEEEeCCCCC---Cchhh-------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          191 LADYIIYIIDVSGGD---KIPRK-------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       191 l~~~~l~llDpt~g~---~l~~~-------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      -++..++++|++...   .+...       ........-.+|+||.|+....- ..+........  .+.+++++||++|
T Consensus        79 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~~Sa~~~  155 (199)
T 2gf0_A           79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV-DTREAQAVAQE--WKCAFMETSAKMN  155 (199)
T ss_dssp             HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS-CHHHHHHHHHH--HTCEEEECBTTTT
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc-CHHHHHHHHHH--hCCeEEEEecCCC
Confidence            357889999987632   11110       00011234589999999875322 22222222222  2467899999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~  275 (283)
                      .|+++++++|...+.
T Consensus       156 ~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          156 YNVKELFQELLTLET  170 (199)
T ss_dssp             BSHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999988654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.79  E-value=2.3e-09  Score=88.63  Aligned_cols=83  Identities=19%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             cCCcEEEEeCCCCCCchh---hc-----CCc---ccccCEEEEEcCCcccccCChHHHHhHHHH-hhc--CCCCeEEEEe
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG-----GPG---ITQADLLVINKTDLASAIGADLAVMERDAL-RMR--DGGPFIFAQV  257 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~-----~~~---i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~~--~~~~i~~isa  257 (283)
                      ++.+++++|.+....+..   ..     ...   ....-.+|+||+|+...  ...+.+.+.+. ...  .+.+++.+|+
T Consensus        91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa  168 (190)
T 2h57_A           91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDA  168 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccC
Confidence            467899999876421111   00     000   13345899999999754  23333333332 221  2557899999


Q ss_pred             ccCCCHHHHHHHHHHHHHH
Q 023354          258 KHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       258 ~~g~gi~~l~~~l~~~~~~  276 (283)
                      ++|.|+++++++|......
T Consensus       169 ~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          169 IKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTTBTHHHHHHHHHHHC--
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999876643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.78  E-value=1e-08  Score=84.39  Aligned_cols=82  Identities=23%  Similarity=0.135  Sum_probs=51.0

Q ss_pred             cCCcEEEEeCCCCC---Cchh---hcCCc---ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGD---KIPR---KGGPG---ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~---~~~~~---i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++.+|+++|++...   .+..   .....   -...-.+|+||.|+....- ..+........  .+.+++++|++++.|
T Consensus        88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~~Sa~~~~g  164 (195)
T 1x3s_A           88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREV-DRNEGLKFARK--HSMLFIEASAKTCDG  164 (195)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCS-CHHHHHHHHHH--TTCEEEECCTTTCTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccccc-CHHHHHHHHHH--cCCEEEEecCCCCCC
Confidence            46789999987642   1111   11000   1234479999999843321 22222222222  356889999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWEA  276 (283)
Q Consensus       263 i~~l~~~l~~~~~~  276 (283)
                      +++++++|...+..
T Consensus       165 i~~l~~~l~~~~~~  178 (195)
T 1x3s_A          165 VQCAFEELVEKIIQ  178 (195)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.78  E-value=6.4e-09  Score=85.04  Aligned_cols=82  Identities=17%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             CCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..++++|++....+.   ....     ..-...-.+|+||.|+........+........  .+.+++++|+++|.|++
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~  159 (183)
T 2fu5_C           82 MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALD--YGIKFMETSAKANINVE  159 (183)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH--HTCEEEECCC---CCHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHH--cCCeEEEEeCCCCCCHH
Confidence            5789999987642211   1000     001234489999999865422223333333222  24689999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          265 EIVNHILQAWEA  276 (283)
Q Consensus       265 ~l~~~l~~~~~~  276 (283)
                      +++++|......
T Consensus       160 ~l~~~l~~~i~~  171 (183)
T 2fu5_C          160 NAFFTLARDIKA  171 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999876643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.78  E-value=4.4e-09  Score=88.14  Aligned_cols=82  Identities=27%  Similarity=0.196  Sum_probs=50.4

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++.+++++|++....   +.....     ......-.+|+||+|+.... ...+........  .+.+++++|++++.|+
T Consensus        93 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKE--LGIPFIESSAKNDDNV  169 (213)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SCHHHHHHHHHH--HTCCEEECBTTTTBSS
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cCHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence            467899999876421   111100     00123448999999983221 222333222222  2468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|...+..
T Consensus       170 ~~l~~~l~~~~~~  182 (213)
T 3cph_A          170 NEIFFTLAKLIQE  182 (213)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876644

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.77  E-value=1.3e-08  Score=95.89  Aligned_cols=162  Identities=19%  Similarity=0.102  Sum_probs=81.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGP  161 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~~~~~  161 (283)
                      ++|+|+|.+|+|||||+|.|++.-     ..+....++.+.+..  ..........+.+++++|......          
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~-----~~~v~~~~g~T~d~~--~~~~~~~~~~~~l~DT~G~~~~~~----------   64 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKK-----KAIVEDEEGVTRDPV--QDTVEWYGKTFKLVDTCGVFDNPQ----------   64 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC-------------------CCS--EEEEEETTEEEEEEECTTTTSSGG----------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-----CceecCCCCCcccee--eEEEEECCeEEEEEECCCcccccc----------
Confidence            479999999999999999999842     122222122111100  000000111123455666422100          


Q ss_pred             HHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchh-hcCCc---ccccCEEEEEcCCcccccCChHH
Q 023354          162 LEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPR-KGGPG---ITQADLLVINKTDLASAIGADLA  237 (283)
Q Consensus       162 l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~-~~~~~---i~~ad~ivi~K~g~i~~~g~~~e  237 (283)
                             ..+      ....+.....+..-+|.+++|+|.+.+..... .....   ....-.+++||+|....   ...
T Consensus        65 -------~~~------~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~---~~~  128 (439)
T 1mky_A           65 -------DII------SQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE---FER  128 (439)
T ss_dssp             -------GCC------CHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---HHH
T ss_pred             -------chH------HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc---cHH
Confidence                   000      00012222333344678999999877642211 00000   12345899999997532   011


Q ss_pred             HHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          238 VMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       238 ~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      ....... .....+++.+||++|.|++++++++...++..
T Consensus       129 ~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          129 EVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             HTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence            1101111 22333789999999999999999998877643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.77  E-value=2.5e-09  Score=85.81  Aligned_cols=80  Identities=21%  Similarity=0.104  Sum_probs=48.4

Q ss_pred             cCCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccC---ChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIG---ADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g---~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      ++..++++|++....+   .....     ..-...-.+++||.|+.....   -..+........  .+.+++++|+++|
T Consensus        76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~  153 (170)
T 1ek0_A           76 AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE--KGLLFFETSAKTG  153 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH--HTCEEEECCTTTC
T ss_pred             CcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHH--cCCEEEEEeCCCC
Confidence            4678999998764211   11000     001233478999999876421   112222222221  3568999999999


Q ss_pred             CCHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQA  273 (283)
Q Consensus       261 ~gi~~l~~~l~~~  273 (283)
                      .|+++++++|...
T Consensus       154 ~gi~~l~~~l~~~  166 (170)
T 1ek0_A          154 ENVNDVFLGIGEK  166 (170)
T ss_dssp             TTHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999998754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.77  E-value=2.2e-09  Score=89.37  Aligned_cols=82  Identities=11%  Similarity=0.111  Sum_probs=50.6

Q ss_pred             hcCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEec
Q 023354          191 LADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVK  258 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~  258 (283)
                      -++..++++|.+....+..   ..    .  ..-..+-.+|+||+|+...  ...+.+...+...   ....+++++||+
T Consensus        96 ~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~  173 (192)
T 2b6h_A           96 NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCAT  173 (192)
T ss_dssp             TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCC
Confidence            3578899999877532221   00    0  0012345899999998654  2223332222111   123468999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 023354          259 HGLGVEEIVNHILQAW  274 (283)
Q Consensus       259 ~g~gi~~l~~~l~~~~  274 (283)
                      +|.|+++++++|....
T Consensus       174 ~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          174 QGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             TTBTHHHHHHHHHHHT
T ss_pred             CcCCHHHHHHHHHHHH
Confidence            9999999999997654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.77  E-value=3.4e-09  Score=99.66  Aligned_cols=165  Identities=21%  Similarity=0.282  Sum_probs=92.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC---hHHH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA---IRED  154 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~---~~~~  154 (283)
                      .++.+++++|++||||||++..|+..+.+. +++.+++.|+......+.....+          ...+.+...   ....
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~----------~~~gv~~~~~~~~~dp  164 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLG----------NQIGVQVYGEPNNQNP  164 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHH----------HTTTCCEECCTTCSCH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHH----------HhcCCceeeccccCCH
Confidence            357899999999999999999999988876 78999998875422111111100          111111110   0001


Q ss_pred             HHHHHHHHHHccccccCCCcccCCch----------HHHHHHHHHHhc-CCcEEEEeCCCCCCchhh---cCCcccccCE
Q 023354          155 ISINLGPLEELSNLFKADLLLCESGG----------DNLAANFSRELA-DYIIYIIDVSGGDKIPRK---GGPGITQADL  220 (283)
Q Consensus       155 ~~~~~~~l~~l~~~~~~d~~i~eSgG----------q~q~~~ia~al~-~~~l~llDpt~g~~l~~~---~~~~i~~ad~  220 (283)
                      .......+..+ ....+|.++.++.|          ..+...+.+++. +.+++++|++++.+....   +...+ -..-
T Consensus       165 ~~i~~~al~~a-~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~-~~~g  242 (433)
T 3kl4_A          165 IEIAKKGVDIF-VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQAS-PIGS  242 (433)
T ss_dssp             HHHHHHHHHHT-TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHC-SSEE
T ss_pred             HHHHHHHHHHH-HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhccc-CCcE
Confidence            11122344443 23467777777444          223344445544 478999999887543221   11111 2468


Q ss_pred             EEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       221 ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ||+||.|.-...|.......      ..+.|+.+++.  |+++
T Consensus       243 VIlTKlD~~a~~G~als~~~------~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          243 VIITKMDGTAKGGGALSAVV------ATGATIKFIGT--GEKI  277 (433)
T ss_dssp             EEEECGGGCSCHHHHHHHHH------HHTCEEEEEEC--CSSS
T ss_pred             EEEecccccccchHHHHHHH------HHCCCEEEEEC--CCCh
Confidence            99999997644332222221      13678888874  6654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.77  E-value=2.1e-08  Score=81.53  Aligned_cols=84  Identities=15%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             cCCcEEEEeCCCCCC---chh---hc----C-CcccccCEEEEEcCCcccc--cCChHHHHhHHHHhhcCCCCeEEEEec
Q 023354          192 ADYIIYIIDVSGGDK---IPR---KG----G-PGITQADLLVINKTDLASA--IGADLAVMERDALRMRDGGPFIFAQVK  258 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~---~~----~-~~i~~ad~ivi~K~g~i~~--~g~~~e~~~~~~~~~~~~~~i~~isa~  258 (283)
                      ++..++++|.+....   +..   ..    . ..-..+-.+|.||.|+...  .....+...+ +.....+.+++++||+
T Consensus        73 ~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~-~~~~~~~~~~~~~Sa~  151 (178)
T 2iwr_A           73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARA-LXADMKRCSYYETXAT  151 (178)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHH-HHHHHSSEEEEEEBTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHH-HHHhhcCCeEEEEecc
Confidence            578899999876421   111   00    0 0012345789999998421  1112232222 2223345689999999


Q ss_pred             cCCCHHHHHHHHHHHHHH
Q 023354          259 HGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       259 ~g~gi~~l~~~l~~~~~~  276 (283)
                      +|.|++++++++......
T Consensus       152 ~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          152 YGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             TTBTHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999876543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.76  E-value=3.8e-09  Score=92.68  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             cCCcEEEEeCCCCCCchhhc--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      ++.+++++|+++........  ......+-.+++||.|.....+...+ . ..+.+ ..+.|++++||++|.|+++++++
T Consensus        84 ~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~-~-~~l~~-~lg~~vi~~SA~~g~gi~el~~~  160 (258)
T 3a1s_A           84 ADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKID-R-YELQK-HLGIPVVFTSSVTGEGLEELKEK  160 (258)
T ss_dssp             CSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBC-H-HHHHH-HHCSCEEECCTTTCTTHHHHHHH
T ss_pred             CCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHH-H-HHHHH-HcCCCEEEEEeeCCcCHHHHHHH
Confidence            46789999988753211100  00113456899999998755432221 1 11222 23579999999999999999999


Q ss_pred             HHHHHH
Q 023354          270 ILQAWE  275 (283)
Q Consensus       270 l~~~~~  275 (283)
                      +.....
T Consensus       161 i~~~~~  166 (258)
T 3a1s_A          161 IVEYAQ  166 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.75  E-value=2.3e-09  Score=89.34  Aligned_cols=101  Identities=22%  Similarity=0.223  Sum_probs=50.6

Q ss_pred             CcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc------CC--cccccCEEEEEcCCccc-ccCChHH
Q 023354          173 LLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG------GP--GITQADLLVINKTDLAS-AIGADLA  237 (283)
Q Consensus       173 ~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~------~~--~i~~ad~ivi~K~g~i~-~~g~~~e  237 (283)
                      ..++++.|+.....+....   ++..|+++|++....+   ....      ..  .....-.+|+||+|+.. ...-..+
T Consensus        75 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~  154 (208)
T 2yc2_C           75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD  154 (208)
T ss_dssp             EEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH
Confidence            3445566655443443333   2578999998775221   1110      00  01234489999999876 3222233


Q ss_pred             HHhHHHHhhcCCCCeEEEEecc-CCCHHHHHHHHHHHHH
Q 023354          238 VMERDALRMRDGGPFIFAQVKH-GLGVEEIVNHILQAWE  275 (283)
Q Consensus       238 ~~~~~~~~~~~~~~i~~isa~~-g~gi~~l~~~l~~~~~  275 (283)
                      ........  .+.+++++|+++ +.|+++++++|.....
T Consensus       155 ~~~~~~~~--~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          155 MAQDWATT--NTLDFFDVSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             HHHHHHHH--TTCEEEECCC-------CHHHHHHHHHHH
T ss_pred             HHHHHHHH--cCCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence            33333322  246899999999 9999999999987553

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.75  E-value=1.3e-08  Score=86.02  Aligned_cols=84  Identities=13%  Similarity=0.102  Sum_probs=50.1

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|++....+..   .....     -...-.+|+||+|+.....            -..+... .+.+.....+
T Consensus       106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  184 (214)
T 2j1l_A          106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQ-EMARSVGAVA  184 (214)
T ss_dssp             EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHH-HHHHHTTCSE
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHH-HHHHhcCCCE
Confidence            357899999876422111   00000     0234588999999875421            0111111 1222223348


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ++++||++|.|+++++++|......
T Consensus       185 ~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          185 YLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHH
Confidence            8999999999999999999877654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.75  E-value=1.9e-09  Score=91.13  Aligned_cols=84  Identities=13%  Similarity=0.091  Sum_probs=51.7

Q ss_pred             cCCcEEEEeCCCCC---CchhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGD---KIPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|+++|.+...   ++......     .-...-.+|+||+|+........+....  .....+.+++.+||++|.|+
T Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g~gv  162 (218)
T 4djt_A           85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVME--VLKGKNYEYFEISAKTAHNF  162 (218)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHH--HTTTCCCEEEEEBTTTTBTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH--HHHHcCCcEEEEecCCCCCH
Confidence            46789999988752   22111000     0023458999999986542222222221  22234678999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 023354          264 EEIVNHILQAWEAS  277 (283)
Q Consensus       264 ~~l~~~l~~~~~~~  277 (283)
                      ++++++|...+...
T Consensus       163 ~~l~~~l~~~~~~~  176 (218)
T 4djt_A          163 GLPFLHLARIFTGR  176 (218)
T ss_dssp             THHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.75  E-value=3.1e-09  Score=88.08  Aligned_cols=84  Identities=17%  Similarity=0.125  Sum_probs=50.5

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCccccc--CChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI--GADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~--g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      ++..++++|.+....+..   .....     -...-.+|+||+|+....  ....+...... +.....+++++||++|.
T Consensus        95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~  173 (194)
T 3reg_A           95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-QKLGCVAYIEASSVAKI  173 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHH-HHHTCSCEEECBTTTTB
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHH-HhcCCCEEEEeecCCCC
Confidence            357889999876422111   00000     023458999999987431  12223333222 22223339999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAWEA  276 (283)
Q Consensus       262 gi~~l~~~l~~~~~~  276 (283)
                      |+++++++|......
T Consensus       174 gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          174 GLNEVFEKSVDCIFS  188 (194)
T ss_dssp             SHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999876643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.75  E-value=1.9e-09  Score=96.74  Aligned_cols=59  Identities=15%  Similarity=0.103  Sum_probs=38.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEE---EeecCCCCCHHHHHHhccccCCch
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i---~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      ..|++++|+||||||||||||+|+|+.+|+ |.|.+   .+.++.........+.+|+++|.+
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p  229 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTP  229 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSC
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECc
Confidence            468999999999999999999999999987 99988   666654332111123578888875

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.75  E-value=2.1e-08  Score=93.47  Aligned_cols=82  Identities=17%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             cCCcEEEEeCCCCCCchh-h-cC---Cccc-ccCEEEEEcCCcccccCChHHHHhHHHHhhc-----CCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDKIPR-K-GG---PGIT-QADLLVINKTDLASAIGADLAVMERDALRMR-----DGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~-~-~~---~~i~-~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~-----~~~~i~~isa~~g  260 (283)
                      +|..|+++|++.+..... . ..   ..+. ..-.+++||.|++...  ..+...+.+.+..     ...+++++||++|
T Consensus        99 ~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~--~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g  176 (403)
T 3sjy_A           99 MDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE--EALSQYRQIKQFTKGTWAENVPIIPVSALHK  176 (403)
T ss_dssp             CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH--HHHHHHHHHHHHHTTSTTTTCCEEECBTTTT
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH--HHHHHHHHHHHHHHhhCCCCCEEEEEECCCC
Confidence            478999999887642211 0 00   0011 1347899999987542  1222222232222     2578999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~  275 (283)
                      .|+++|+++|....+
T Consensus       177 ~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          177 INIDSLIEGIEEYIK  191 (403)
T ss_dssp             BSHHHHHHHHHHHSC
T ss_pred             cChHHHHHHHHHhCC
Confidence            999999999987653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.75  E-value=1.1e-09  Score=91.46  Aligned_cols=84  Identities=14%  Similarity=0.079  Sum_probs=52.7

Q ss_pred             cCCcEEEEeCCCCCCc---hhhc---C---CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRKG---G---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~---~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   ....   .   .....+-.+|+||+|+........+........  .+.+++++|+++|.|
T Consensus        96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~  173 (201)
T 3oes_A           96 VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES--WGATFMESSARENQL  173 (201)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEECCTTCHHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH--hCCeEEEEeCCCCCC
Confidence            3678999998764211   1110   0   011234589999999875533333333322222  346899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 023354          263 VEEIVNHILQAWEAS  277 (283)
Q Consensus       263 i~~l~~~l~~~~~~~  277 (283)
                      +++++++|...+...
T Consensus       174 v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          174 TQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.74  E-value=8.7e-09  Score=83.63  Aligned_cols=82  Identities=20%  Similarity=0.046  Sum_probs=51.1

Q ss_pred             cCCcEEEEeCCCCCCc---hhhcCCc-------cccc-CEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDKI---PRKGGPG-------ITQA-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~~~~-------i~~a-d~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      ++..++++|++....+   .......       -..+ -.+|+||.|+........+........  .+.+++++||++|
T Consensus        80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~  157 (178)
T 2hxs_A           80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE--NGFSSHFVSAKTG  157 (178)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH--HTCEEEEECTTTC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHH--cCCcEEEEeCCCC
Confidence            4688999998764221   1110000       0123 367899999875432223333332222  2468999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~  275 (283)
                      .|+++++++|.....
T Consensus       158 ~gi~~l~~~l~~~~~  172 (178)
T 2hxs_A          158 DSVFLCFQKVAAEIL  172 (178)
T ss_dssp             TTHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999987664

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.74  E-value=5.2e-10  Score=103.03  Aligned_cols=62  Identities=16%  Similarity=0.016  Sum_probs=45.8

Q ss_pred             cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccC-Cc
Q 023354           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALP-EE  136 (283)
Q Consensus        73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~-q~  136 (283)
                      ..++|. .+|++++|+||||||||||+++|+|+++|+ |.|.+.+..  .......+..+++++ |+
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~~~~~~~~~v~~v~~q~  230 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--ELFLPDHPNHVHLFYPSE  230 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CCCCTTCSSEEEEECC--
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--ccCccccCCEEEEeecCc
Confidence            566776 459999999999999999999999999987 888887532  222212345678887 54

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.74  E-value=1.5e-08  Score=85.22  Aligned_cols=26  Identities=27%  Similarity=0.172  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +...|+|+|+.|+|||||++.+++..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35689999999999999999999853

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.74  E-value=4.8e-08  Score=81.45  Aligned_cols=84  Identities=19%  Similarity=0.139  Sum_probs=52.8

Q ss_pred             hcCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      -++..|+++|.+...   .+....      ......+-.+|.||+|+.....-..+........  .+.+++++||+++.
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~--~~~~~~e~Sa~~~~  173 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT--LSCKHIETSAALHH  173 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHH--TTCEEEEEBTTTTB
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHH--hCCEEEEEcCCCCC
Confidence            357889999987632   111111      0001234579999999875432233333322222  34689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAWEA  276 (283)
Q Consensus       262 gi~~l~~~l~~~~~~  276 (283)
                      |++++++++......
T Consensus       174 ~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          174 NTRELFEGAVRQIRL  188 (195)
T ss_dssp             SHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999877654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.74  E-value=3.4e-09  Score=86.53  Aligned_cols=84  Identities=15%  Similarity=0.028  Sum_probs=52.4

Q ss_pred             cCCcEEEEeCCCCCCc---hhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..++++|.+....+   ...      .......+-.+|+||.|+........+........  .+.+++++|++++.|
T Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~  155 (181)
T 3t5g_A           78 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES--WNAAFLESSAKENQT  155 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH--TTCEEEECCTTSHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH--hCCcEEEEecCCCCC
Confidence            3578889998763211   110      00011234589999999865433333333333222  356899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 023354          263 VEEIVNHILQAWEAS  277 (283)
Q Consensus       263 i~~l~~~l~~~~~~~  277 (283)
                      +++++++|.......
T Consensus       156 v~~l~~~l~~~~~~~  170 (181)
T 3t5g_A          156 AVDVFRRIILEAEKM  170 (181)
T ss_dssp             HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998877543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.73  E-value=3.7e-09  Score=89.97  Aligned_cols=81  Identities=15%  Similarity=0.027  Sum_probs=48.3

Q ss_pred             CCcEEEEeCCCCCCch---hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKIP---RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~---~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..|+++|++....+.   ....     ..-...-.||+||.|+........+........  .+.+++++|++++.|++
T Consensus        87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~gi~  164 (223)
T 3cpj_B           87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE--NQLLFTETSALNSENVD  164 (223)
T ss_dssp             CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHH--TTCEEEECCCC-CCCHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH--cCCEEEEEeCCCCCCHH
Confidence            5688999987642211   1000     001234478899999875432222333332222  45789999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          265 EIVNHILQAWE  275 (283)
Q Consensus       265 ~l~~~l~~~~~  275 (283)
                      +++++|.....
T Consensus       165 ~l~~~l~~~i~  175 (223)
T 3cpj_B          165 KAFEELINTIY  175 (223)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999987653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.72  E-value=1.3e-08  Score=87.01  Aligned_cols=97  Identities=22%  Similarity=0.235  Sum_probs=57.9

Q ss_pred             cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC---Cchhh-------cCCcccccCEEEEEcCCcccccCChHHHHh
Q 023354          174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGD---KIPRK-------GGPGITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~---~l~~~-------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .+++++||.+--.+....   ++..+++.|.+.-.   .+..+       ...  ...-.||.||.|+.....-..+...
T Consensus        65 ~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~--~~piilVgNK~Dl~~~r~V~~~e~~  142 (216)
T 4dkx_A           65 QLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEEGE  142 (216)
T ss_dssp             EEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccchHhcCcccHHHHh
Confidence            345566654332333222   35788888987632   22111       111  2234788899998754333333333


Q ss_pred             HHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          241 RDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       241 ~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      +...+  .+++++++||++|.||+++++.|....
T Consensus       143 ~~a~~--~~~~~~e~SAktg~nV~e~F~~i~~~i  174 (216)
T 4dkx_A          143 RKAKE--LNVMFIETSAKAGYNVKQLFRRVAAAL  174 (216)
T ss_dssp             HHHHH--HTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred             hHHHH--hCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence            33333  246789999999999999999987654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.71  E-value=1.2e-08  Score=96.50  Aligned_cols=82  Identities=18%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             HHHhcCCcEEEEeCCCCCCchhh----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          188 SRELADYIIYIIDVSGGDKIPRK----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       188 a~al~~~~l~llDpt~g~~l~~~----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      +..-++.+|+++|.+.+......    ........-.+++||+|.....    +...+ .. .....+++.+||++|.|+
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~----~~~~e-~~-~lg~~~~~~iSA~~g~gv  172 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR----ANIYD-FY-SLGFGEPYPISGTHGLGL  172 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-------------CC-SG-GGSSSSEEECCTTTCTTH
T ss_pred             hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh----hhHHH-HH-HcCCCceEEeecccccch
Confidence            33446889999997765322111    0011234558999999986431    11111 01 112346789999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      .++++++...++
T Consensus       173 ~~L~~~i~~~l~  184 (456)
T 4dcu_A          173 GDLLDAVAEHFK  184 (456)
T ss_dssp             HHHHHHHHTTGG
T ss_pred             HHHHHHHHhhcc
Confidence            999999987654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.71  E-value=1.2e-09  Score=91.66  Aligned_cols=53  Identities=23%  Similarity=0.088  Sum_probs=42.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      |++++|+||||||||||+++|+|+++..| +.+.+.+.....  ..++.+|+++|+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~--~~~~~ig~~~~~   53 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVR--QGGRRIGFDVVT   53 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEE--TTSSEEEEEEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhH--hhhceEEEEEEe
Confidence            67899999999999999999999998338 888776664322  245678998886

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.71  E-value=3.2e-08  Score=84.15  Aligned_cols=82  Identities=16%  Similarity=0.087  Sum_probs=49.4

Q ss_pred             CCcEEEEeCCCCCC---chhh---cC---CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          193 DYIIYIIDVSGGDK---IPRK---GG---PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~~~---~~---~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      +..|++.|.+.-..   +...   ..   ..-..+-.+|.||+|+.....-..+.......  ..+.+++++||++|.|+
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~--~~~~~~~e~SAk~g~~v  190 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV--VFDCKFIETSAAVQHNV  190 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH--HHTCEEEECBTTTTBSH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH--HcCCEEEEEeCCCCCCH
Confidence            57888899775321   1110   00   00123457889999987542222222211111  23468899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|......
T Consensus       191 ~elf~~l~~~i~~  203 (211)
T 2g3y_A          191 KELFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.71  E-value=1.4e-08  Score=92.85  Aligned_cols=80  Identities=19%  Similarity=0.192  Sum_probs=51.7

Q ss_pred             cCCcEEEEeCCCC--CCc----h---h---hcCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhcC-CCCeEEEEe
Q 023354          192 ADYIIYIIDVSGG--DKI----P---R---KGGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRD-GGPFIFAQV  257 (283)
Q Consensus       192 ~~~~l~llDpt~g--~~l----~---~---~~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~-~~~i~~isa  257 (283)
                      ++.+|+|+|.+..  .+.    .   .   .+.. .....-.||+||+|+...    .+.+. .+.+... ..+++++||
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~-~l~~~l~~~~~v~~iSA  311 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLE-AFKEKLTDDYPVFPISA  311 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHH-HHHHHCCSCCCBCCCSS
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHH-HHHHHhhcCCCEEEEEC
Confidence            5788999998762  111    0   0   1111 123456899999998743    12222 2233332 267899999


Q ss_pred             ccCCCHHHHHHHHHHHHHH
Q 023354          258 KHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       258 ~~g~gi~~l~~~l~~~~~~  276 (283)
                      +++.|+++++++|...+..
T Consensus       312 ~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          312 VTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             CCSSTTHHHHHHHHHHHTS
T ss_pred             CCCcCHHHHHHHHHHHHhh
Confidence            9999999999999888754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.71  E-value=3.7e-09  Score=88.78  Aligned_cols=81  Identities=12%  Similarity=0.099  Sum_probs=48.6

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|.+....+..   .....     -...-.+|+||+|+.....            -..+... ...+.....+
T Consensus       102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  180 (204)
T 4gzl_A          102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMAKEIGAVK  180 (204)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH-HHHHHTTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHH-HHHHhcCCcE
Confidence            367899999876432111   00000     1334589999999875421            0111111 1223334456


Q ss_pred             eEEEEeccCCCHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      ++++||++|.|++++++++.+.
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999998753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.70  E-value=2.5e-09  Score=88.96  Aligned_cols=53  Identities=25%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             CEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          219 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       219 d~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      -.+++||.|+........+....  +...+...++.+|++++.++++++++|.+.
T Consensus       137 i~~v~nK~Dl~~~~~~~~~~a~~--l~~~~~~~~ld~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          137 IMLVGNKSDLRHLRAVPTDEARA--FAEKNGLSFIETSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             EEEEEECGGGGGGCCSCHHHHHH--HHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEEECcccccccccCHHHHHH--HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            47788999976432222232222  222356778889999999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.70  E-value=9.1e-09  Score=85.62  Aligned_cols=86  Identities=13%  Similarity=0.099  Sum_probs=51.6

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|++....+..   .....     -...-.+|+||+|+....            ....+.... +.......+
T Consensus        92 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  170 (201)
T 2q3h_A           92 TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL-LAEEIKAAS  170 (201)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HHHHHTCSE
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH-HHHhcCCcE
Confidence            357899999876421111   00000     033458899999987531            111222222 222223347


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHHHhh
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAWEAST  278 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~~~~~  278 (283)
                      ++++||++|.|+++++++|........
T Consensus       171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          171 YIECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            899999999999999999988765443

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.69  E-value=4.1e-08  Score=88.35  Aligned_cols=42  Identities=33%  Similarity=0.426  Sum_probs=37.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      .++++++|+|+|||||||+++.|++.+.+. ++|.+++.|...
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            458999999999999999999999999876 789999988753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.69  E-value=3.4e-09  Score=102.16  Aligned_cols=69  Identities=10%  Similarity=-0.001  Sum_probs=54.5

Q ss_pred             CCCcccccc-c-CCCcEEEEEcCCCCcHHHHHHH--HHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH
Q 023354           69 APPILSRNF-N-ERAFTVGIGGPVGTGKTALMLA--LCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI  138 (283)
Q Consensus        69 ~~~~~~~~~-~-~~g~~v~ilG~nGsGKSTLl~~--L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~  138 (283)
                      .+++++++| . .+|++++|+||||||||||+++  ++|+++|+ |.+.+.+.+. .....+.++.+|+++|++.
T Consensus        25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~   98 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV   98 (525)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence            468899998 5 5699999999999999999999  68999866 8998887662 1122344567999998754

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.69  E-value=1.9e-09  Score=109.82  Aligned_cols=36  Identities=17%  Similarity=0.155  Sum_probs=31.7

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ...+++++|.. +|++++|+||||||||||||+++++
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            45778999985 5999999999999999999999764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.69  E-value=1.3e-09  Score=100.22  Aligned_cols=55  Identities=16%  Similarity=0.126  Sum_probs=38.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-----CcEEEE----eecCCCCCHHHHHHhccccCCch
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-----YSLAAV----TNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-----g~i~i~----~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      +++++|+||||||||||+++|+|++.|+     |++.+.    +.++ .....++ ..+++++|..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~  233 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRY  233 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHH
Confidence            8999999999999999999999999863     555442    2222 2222233 4467766654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.69  E-value=7.3e-09  Score=84.38  Aligned_cols=82  Identities=17%  Similarity=0.098  Sum_probs=48.6

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccCC----------hHHHHhHHHHhhcCCCCeE
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGA----------DLAVMERDALRMRDGGPFI  253 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g~----------~~e~~~~~~~~~~~~~~i~  253 (283)
                      ++..++++|++....+..   .....     -...-.+|+||.|+......          ..+.... +.......+++
T Consensus        80 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~  158 (182)
T 3bwd_D           80 ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE-LKKLIGAPAYI  158 (182)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH-HHHHHTCSEEE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH-HHHHcCCCEEE
Confidence            357899999876421110   00000     02345889999998654210          1111222 22222234889


Q ss_pred             EEEeccCCCHHHHHHHHHHHH
Q 023354          254 FAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       254 ~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ++||++|.|+++++++|....
T Consensus       159 ~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          159 ECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            999999999999999997654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.69  E-value=5.4e-08  Score=92.87  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=62.3

Q ss_pred             CCcccCCchHHHHHHHHHH---hcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHH-
Q 023354          172 DLLLCESGGDNLAANFSRE---LADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDA-  243 (283)
Q Consensus       172 d~~i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~-  243 (283)
                      ...++++.|+.+.......   .+|..|+++|++.+...+...    .........+++||.|++..  ...+...+.+ 
T Consensus        74 ~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~--~~~~~~~~~l~  151 (482)
T 1wb1_A           74 RITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT--EEIKRTEMIMK  151 (482)
T ss_dssp             EEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH--HHHHHHHHHHH
T ss_pred             EEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc--hhHHHHHHHHH
Confidence            3445667776554333322   246899999998764221110    00112344899999998753  1222222222 


Q ss_pred             ---Hhh--cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          244 ---LRM--RDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       244 ---~~~--~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                         ...  ....+++++||++|.|+++|+++|....+
T Consensus       152 ~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          152 SILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence               221  22578999999999999999999988664

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.68  E-value=2.4e-08  Score=90.47  Aligned_cols=169  Identities=17%  Similarity=0.220  Sum_probs=92.3

Q ss_pred             cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH----HHH-----HHhcccc-CCchHHH
Q 023354           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED----GEF-----LMRNGAL-PEERIRA  140 (283)
Q Consensus        73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~----~~~-----~~~ig~v-~q~~~~~  140 (283)
                      .+++|. .++.+++|+|+|||||||++..|++.+.+. ++|.+++.|+.....    ..+     +..++++ +|..   
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~---  172 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL---  172 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST---
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC---
Confidence            355665 458999999999999999999999998876 899999988754221    111     1234444 2210   


Q ss_pred             HHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHH--------HHHHHHh-------cCCcEEEEeCCCCC
Q 023354          141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLA--------ANFSREL-------ADYIIYIIDVSGGD  205 (283)
Q Consensus       141 i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~--------~~ia~al-------~~~~l~llDpt~g~  205 (283)
                             .....   ..+.+.+... ....+|.+++++.|..+.        ..+.+.+       .+.+++++|++++.
T Consensus       173 -------~~~p~---~~~~~~l~~~-~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~  241 (320)
T 1zu4_A          173 -------NADPA---SVVFDAIKKA-KEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQ  241 (320)
T ss_dssp             -------TCCHH---HHHHHHHHHH-HHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTH
T ss_pred             -------CCCHH---HHHHHHHHHH-HhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcH
Confidence                   00111   1112223222 345789999985553221        1111222       23458889987653


Q ss_pred             Cchh---hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          206 KIPR---KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       206 ~l~~---~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +...   .....+ ...-+|+||.+.-...|   ..+ . +.. ..+.|+.++.  .|++++
T Consensus       242 ~~l~~~~~~~~~~-~i~GvVltk~d~~~~~g---~~~-~-~~~-~~~~Pi~~i~--~Ge~~~  294 (320)
T 1zu4_A          242 NGVIQAEEFSKVA-DVSGIILTKMDSTSKGG---IGL-A-IKE-LLNIPIKMIG--VGEKVD  294 (320)
T ss_dssp             HHHHHHHHHTTTS-CCCEEEEECGGGCSCTT---HHH-H-HHH-HHCCCEEEEE--CSSSTT
T ss_pred             HHHHHHHHHhhcC-CCcEEEEeCCCCCCchh---HHH-H-HHH-HHCcCEEEEe--CCCCcc
Confidence            2111   111111 13468999987643322   111 1 111 2357887775  566654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.68  E-value=1.3e-08  Score=83.46  Aligned_cols=58  Identities=21%  Similarity=0.259  Sum_probs=39.5

Q ss_pred             ccCEEEEEcCCcccccCChHHHHhHHHHhhcC-----CCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          217 QADLLVINKTDLASAIGADLAVMERDALRMRD-----GGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~-----~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      .+-.+|+||+|+....   .+...........     ..+++++|+++|.|+++++++|...+...
T Consensus       123 ~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          123 IPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             CCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             CceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            4558999999987652   2223222222211     12479999999999999999998877654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.67  E-value=1.6e-08  Score=95.17  Aligned_cols=165  Identities=17%  Similarity=0.270  Sum_probs=90.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC---ChHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA---AIREDI  155 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~---~~~~~~  155 (283)
                      ++.+++++|++||||||++..|+..+... .++.++..|+......+..+..+          ...+.+..   ......
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~----------~~~gvpv~~~~~~~dp~  168 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL----------DRYHIEVFGNPQEKDAI  168 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH----------GGGTCEEECCTTCCCHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH----------HhcCCcEEecCCCCCHH
Confidence            57899999999999999999999988766 58888888875432211111110          00111110   000011


Q ss_pred             HHHHHHHHHccccccCCCcccCCchH-----HHHH---HHHHHh-cCCcEEEEeCCCCCCchhh---cCCcccccCEEEE
Q 023354          156 SINLGPLEELSNLFKADLLLCESGGD-----NLAA---NFSREL-ADYIIYIIDVSGGDKIPRK---GGPGITQADLLVI  223 (283)
Q Consensus       156 ~~~~~~l~~l~~~~~~d~~i~eSgGq-----~q~~---~ia~al-~~~~l~llDpt~g~~l~~~---~~~~i~~ad~ivi  223 (283)
                      ..+...+..+ ....+|.+++++.|.     ....   .+.++. .+.+++|+|++.+.+....   +...+ ..+-||+
T Consensus       169 ~i~~~al~~a-~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~-~i~gVIl  246 (443)
T 3dm5_A          169 KLAKEGVDYF-KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT-PIGSIIV  246 (443)
T ss_dssp             HHHHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC-TTEEEEE
T ss_pred             HHHHHHHHHH-HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC-CCeEEEE
Confidence            1122334333 234588888886662     1112   222222 2578999999887543221   11111 2346999


Q ss_pred             EcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          224 NKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       224 ~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      ||.|.....|....     +. ...+.|+.+++.  |++++
T Consensus       247 TKlD~~~~gG~~ls-----~~-~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          247 TKLDGSAKGGGALS-----AV-AATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             ECCSSCSSHHHHHH-----HH-HTTCCCEEEEEC--SSSTT
T ss_pred             ECCCCcccccHHHH-----HH-HHHCCCEEEEEc--CCChH
Confidence            99997644322211     11 235789988874  66553

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.67  E-value=1e-08  Score=83.69  Aligned_cols=83  Identities=12%  Similarity=0.063  Sum_probs=49.4

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|++....+..   .....     -...-.+|+||.|+.....            -..+.... +.+.....+
T Consensus        77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  155 (186)
T 1mh1_A           77 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA-MAKEIGAVK  155 (186)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH-HHHHTTCSE
T ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHH-HHHhcCCcE
Confidence            357889999876421111   00000     0334589999999875411            01111111 222222248


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ++++||++|.|++++++++.....
T Consensus       156 ~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          156 YLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EEEecCCCccCHHHHHHHHHHHHh
Confidence            999999999999999999987764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.67  E-value=5.7e-09  Score=104.63  Aligned_cols=98  Identities=13%  Similarity=-0.028  Sum_probs=64.5

Q ss_pred             CCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhccc-CC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCC
Q 023354           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLR-DK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGC  146 (283)
Q Consensus        69 ~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~  146 (283)
                      ...+++++|.  |++++|+||||||||||||+++|+.. +. |.+.     +.      ....+|+++|-.         
T Consensus       566 ~~vl~disl~--g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-----pa------~~~~i~~v~~i~---------  623 (765)
T 1ewq_A          566 EFVPNDLEMA--HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-----PA------EEAHLPLFDGIY---------  623 (765)
T ss_dssp             CCCCEEEEES--SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-----SS------SEEEECCCSEEE---------
T ss_pred             ceEeeeccCC--CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-----eh------hccceeeHHHhh---------
Confidence            4678899998  99999999999999999999999864 44 6532     00      123466665510         


Q ss_pred             CCCChHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHh--c-CCcEEEEe-C---CCCCC
Q 023354          147 PHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSREL--A-DYIIYIID-V---SGGDK  206 (283)
Q Consensus       147 ~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al--~-~~~l~llD-p---t~g~~  206 (283)
                      ......+++                  ....|.|+.+++.+++++  + ++.++++| |   |++.|
T Consensus       624 ~~~~~~d~l------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD  672 (765)
T 1ewq_A          624 TRIGASDDL------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD  672 (765)
T ss_dssp             EECCC------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred             ccCCHHHHH------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence            000111110                  112388899999999888  5 48888888 8   55443

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.67  E-value=9.8e-09  Score=93.21  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             cCCcEEEEeCCCCCCchh---hcC---Cc---ccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGG---PG---ITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~---~~---i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~  259 (283)
                      ++.+|+++|++....+..   ...   ..   -..+-.||+||.|+....  ..+.+...+...   ....+++.+|+++
T Consensus       233 ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~  310 (329)
T 3o47_A          233 TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATS  310 (329)
T ss_dssp             EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred             CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence            468899999876432211   100   00   123458999999987652  233333322211   1345789999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAWE  275 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~  275 (283)
                      |.|+++++++|...+.
T Consensus       311 g~gi~el~~~l~~~l~  326 (329)
T 3o47_A          311 GDGLYEGLDWLSNQLR  326 (329)
T ss_dssp             TBTHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999987654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.66  E-value=1.4e-08  Score=85.23  Aligned_cols=83  Identities=22%  Similarity=0.172  Sum_probs=48.4

Q ss_pred             cCCcEEEEeCCCCCCch---hhcCCcc-----cccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIP---RKGGPGI-----TQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~~~~i-----~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|++....+.   ......+     ...-.+|+||.|+.....            -..+.... +.......+
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  175 (207)
T 2fv8_A           97 TDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRA-MAVRIQAYD  175 (207)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHH-HHHHTTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHH-HHHhcCCCE
Confidence            35788889987642111   0000000     234589999999875410            01111111 112222237


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ++++||++|.|+++++++|.+...
T Consensus       176 ~~~~SA~~g~gi~el~~~l~~~i~  199 (207)
T 2fv8_A          176 YLECSAKTKEGVREVFETATRAAL  199 (207)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999987654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.66  E-value=8.9e-09  Score=97.96  Aligned_cols=50  Identities=18%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             CcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      ++++++|..+.++++|+|||||||||||++|+|+++|+ |+|.+.+.++..
T Consensus        19 ~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~   69 (483)
T 3euj_A           19 GFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG   69 (483)
T ss_dssp             TEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred             cccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence            56777777433999999999999999999999999987 999999887764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.66  E-value=8.3e-09  Score=84.61  Aligned_cols=79  Identities=13%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             cCCcEEEEeCCCCCCchh---hc---CC---cccccCEEEEEcCCcccccCChHHHHhHHHHh-h--cCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG---GP---GITQADLLVINKTDLASAIGADLAVMERDALR-M--RDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~---~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~--~~~~~i~~isa~~  259 (283)
                      ++..++++|.+....+..   ..   ..   .....-.+|+||.|+...  ...+.+.+.+.. .  ....+++.+||++
T Consensus        89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  166 (181)
T 2h17_A           89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT  166 (181)
T ss_dssp             CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            367899999887543221   00   00   112344899999998654  222333322211 1  1234789999999


Q ss_pred             CCCHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQ  272 (283)
Q Consensus       260 g~gi~~l~~~l~~  272 (283)
                      |.|+++++++|.+
T Consensus       167 g~gi~~l~~~l~~  179 (181)
T 2h17_A          167 GEGLCQGLEWMMS  179 (181)
T ss_dssp             TBTHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHh
Confidence            9999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.65  E-value=6.2e-08  Score=85.54  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=26.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      .+|++++|+||||||||||++.+++.+..
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            47999999999999999999999986653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.65  E-value=2.3e-08  Score=82.62  Aligned_cols=82  Identities=11%  Similarity=0.090  Sum_probs=48.7

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCcc-----cccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPGI-----TQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~i-----~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|++....+..   .....+     ...-.+|+||+|+....            .-..+..... .+.....+
T Consensus        90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~  168 (194)
T 2atx_A           90 TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKL-AKEIGACC  168 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHH-HHHHTCSC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHH-HHHcCCcE
Confidence            357889999876421111   000000     23458999999987531            0111222222 22222348


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ++++|+++|.|+++++++|....
T Consensus       169 ~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          169 YVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999997654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.64  E-value=2.6e-08  Score=82.32  Aligned_cols=81  Identities=17%  Similarity=0.031  Sum_probs=50.3

Q ss_pred             cCCcEEEEeCCCCCCch---hhcCCc--------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEe-cc
Q 023354          192 ADYIIYIIDVSGGDKIP---RKGGPG--------ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQV-KH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~~~~--------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa-~~  259 (283)
                      ++..++++|.+....+.   ......        -...-.+|.||+|+.....-..+...+.....  +.+++++|| ++
T Consensus        92 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~  169 (187)
T 3c5c_A           92 AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRF--GCLFFEVSACLD  169 (187)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEEECCSSSC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHc--CCcEEEEeecCc
Confidence            46788999987642111   110000        12344899999998654322333333333332  458999999 89


Q ss_pred             CCCHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAW  274 (283)
Q Consensus       260 g~gi~~l~~~l~~~~  274 (283)
                      +.|++++++++....
T Consensus       170 g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          170 FEHVQHVFHEAVREA  184 (187)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999997765

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.63  E-value=2.5e-09  Score=94.59  Aligned_cols=80  Identities=20%  Similarity=0.185  Sum_probs=49.8

Q ss_pred             cCCcEEEEeCCCCCCchhh--cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~--~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      ++.+|+++|+++.......  .......+-.+++||+|+....+...+ . ..+.+ ..+.|++++||++|.|+++++++
T Consensus        86 ~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~-~-~~l~~-~lg~~~i~~SA~~g~gi~el~~~  162 (274)
T 3i8s_A           86 ADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIE-I-DALSA-RLGCPVIPLVSTRGRGIEALKLA  162 (274)
T ss_dssp             CSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEEC-H-HHHHH-HHTSCEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHH-H-HHHHH-hcCCCEEEEEcCCCCCHHHHHHH
Confidence            4678999998763211000  000124456899999998755332111 1 11222 23578999999999999999999


Q ss_pred             HHHHH
Q 023354          270 ILQAW  274 (283)
Q Consensus       270 l~~~~  274 (283)
                      +....
T Consensus       163 i~~~~  167 (274)
T 3i8s_A          163 IDRYK  167 (274)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            87654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.62  E-value=7.1e-09  Score=93.08  Aligned_cols=58  Identities=14%  Similarity=0.112  Sum_probs=39.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEE---EeecCCCCCHHHHHHhccccCCch
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i---~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      ..|++++|+||||||||||+|+|+ ++.|. |.|.+   .+.++.........+.+|+++|.+
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p  224 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP  224 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence            468999999999999999999999 88887 99998   666654322111112578887764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.62  E-value=6.9e-09  Score=86.73  Aligned_cols=82  Identities=20%  Similarity=0.143  Sum_probs=47.9

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccC------------ChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIG------------ADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g------------~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|++....+..   .....     -...-.+|+||+|+.....            -..+.... ........+
T Consensus        97 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  175 (201)
T 2gco_A           97 TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRD-MANRISAFG  175 (201)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHH-HHHHTTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHH-HHHhCCCcE
Confidence            357888999876321110   00000     0334589999999875411            11111111 122222337


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ++++|+++|.|+++++++|.+..
T Consensus       176 ~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          176 YLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            89999999999999999997754

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.60  E-value=7e-08  Score=90.52  Aligned_cols=170  Identities=22%  Similarity=0.195  Sum_probs=92.5

Q ss_pred             ccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-H---HHhccccCCchHHHHHhCCCC
Q 023354           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-F---LMRNGALPEERIRAVETGGCP  147 (283)
Q Consensus        73 ~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~---~~~ig~v~q~~~~~i~~~g~~  147 (283)
                      ..++|. ++.+++|+|++||||||++..|++.+.+. +++.+++.|+......+ +   ....++ +       .+....
T Consensus        91 ~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv-~-------v~~~~~  161 (425)
T 2ffh_A           91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV-P-------VLEVMD  161 (425)
T ss_dssp             CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTC-C-------EEECCT
T ss_pred             ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCc-c-------EEecCC
Confidence            345566 88999999999999999999999999876 79999998875422111 1   111111 0       000001


Q ss_pred             CCChHHHHHHHHHHHHHccccccCCCcccCCchH--------HHHHHHHHHhc-CCcEEEEeCCCCCCchhh---cCCcc
Q 023354          148 HAAIREDISINLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-DYIIYIIDVSGGDKIPRK---GGPGI  215 (283)
Q Consensus       148 ~~~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq--------~q~~~ia~al~-~~~l~llDpt~g~~l~~~---~~~~i  215 (283)
                      ... ...+  ..+.++.+ ....+|.+++++.|.        .+...+++++. +++++++|++++.+....   +...+
T Consensus       162 ~~~-p~~i--~~~~l~~~-~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l  237 (425)
T 2ffh_A          162 GES-PESI--RRRVEEKA-RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV  237 (425)
T ss_dssp             TCC-HHHH--HHHHHHHH-HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHT
T ss_pred             CCC-HHHH--HHHHHHHH-HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcC
Confidence            011 1111  12233333 235678888885442        22233444443 578999998877433221   11111


Q ss_pred             cccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          216 TQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       216 ~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      . ..-||+||.|.-...|....     +. ...+.|+.++.  .|+.++
T Consensus       238 ~-i~GVIlTKlD~~~~~g~als-----i~-~~~g~PI~flg--~Ge~~~  277 (425)
T 2ffh_A          238 G-VTGLVLTKLDGDARGGAALS-----AR-HVTGKPIYFAG--VSEKPE  277 (425)
T ss_dssp             C-CCEEEEESGGGCSSCHHHHH-----HH-HHHCCCEEEEE--CSSSGG
T ss_pred             C-ceEEEEeCcCCcccHHHHHH-----HH-HHHCCCEEEEe--CCCChh
Confidence            1 25789999876433221111     11 12367887765  344443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.60  E-value=1.9e-08  Score=85.12  Aligned_cols=83  Identities=12%  Similarity=0.026  Sum_probs=50.4

Q ss_pred             cCCcEEEEeCCCCCCchh----hcCC----cccccCEEEEEcCCcccc------------cCChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR----KGGP----GITQADLLVINKTDLASA------------IGADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~----~~~~----~i~~ad~ivi~K~g~i~~------------~g~~~e~~~~~~~~~~~~~~  251 (283)
                      ++.+|+++|.+....+..    ....    .-...-.+|.||+|+...            ..-..+..... .......+
T Consensus        99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~  177 (214)
T 3q3j_B           99 SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI-AKQLGAEI  177 (214)
T ss_dssp             CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH-HHHHTCSE
T ss_pred             CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH-HHHcCCCE
Confidence            367899999887532211    1000    012345889999998752            11122222222 22222338


Q ss_pred             eEEEEeccCCC-HHHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLG-VEEIVNHILQAWE  275 (283)
Q Consensus       252 i~~isa~~g~g-i~~l~~~l~~~~~  275 (283)
                      ++++||++|.| ++++++++.....
T Consensus       178 ~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          178 YLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCcccHHHHHHHHHHHHh
Confidence            89999999998 9999999987654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.60  E-value=3.8e-08  Score=88.48  Aligned_cols=54  Identities=22%  Similarity=0.391  Sum_probs=41.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc--CC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~--~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      .+|++++|+|+||||||||+++|+|++.  |+ |.|.++..+-..... ..++.+|++
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~~~~~~~v  134 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QVLKERGLM  134 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HHHHHHTCT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HHHHhCCEe
Confidence            5689999999999999999999999987  76 899885443322222 344567777

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.60  E-value=2e-08  Score=103.63  Aligned_cols=102  Identities=16%  Similarity=0.031  Sum_probs=60.8

Q ss_pred             CCCcccccccCC--------CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhcc-ccCCchHH
Q 023354           69 APPILSRNFNER--------AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNG-ALPEERIR  139 (283)
Q Consensus        69 ~~~~~~~~~~~~--------g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig-~v~q~~~~  139 (283)
                      ...+++++|...        |++++|+||||||||||||.+ |++.+                   ...+| ||||+.. 
T Consensus       769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------------------~aqiG~~Vpq~~~-  827 (1022)
T 2o8b_B          769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------------------MAQMGCYVPAEVC-  827 (1022)
T ss_dssp             CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------------HHTTTCCEESSEE-
T ss_pred             ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------------HhheeEEeccCcC-
Confidence            457888888643        799999999999999999999 98642                   24566 8888642 


Q ss_pred             HHHhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCC
Q 023354          140 AVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDK  206 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~  206 (283)
                        .++.+....            ..++..+....-+.. ++++. +++++++++. +.++|+| |++|.+
T Consensus       828 --~l~v~d~I~------------~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd  882 (1022)
T 2o8b_B          828 --RLTPIDRVF------------TRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRGTA  882 (1022)
T ss_dssp             --EECCCSBEE------------EECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSC
T ss_pred             --CCCHHHHHH------------HHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCC
Confidence              111111000            000000000000111 44444 4788888874 7777777 988865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.55  E-value=9.8e-08  Score=80.00  Aligned_cols=55  Identities=18%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      .+|++++|+||||||||||+++|++.+   |.+.+.+.++... ........|+++|+.
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~-~~~~~~~~g~~~~~~   81 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSP-ENIATMQRGIPLTDE   81 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCH-HHHHHHHTTCCCCHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccH-HHHHHHhcCCCCCCc
Confidence            468999999999999999999999976   7788877766421 112233578888764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.54  E-value=8.7e-09  Score=92.08  Aligned_cols=122  Identities=17%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC----cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCChHHH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY----SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIRED  154 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g----~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~  154 (283)
                      .++.+|+|+|++|||||||.+.|.+++.+.|    .+.++..|..-.+. ..+.++.+-..+. .....-|++.....+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~-~l~~~~g~p~a~d~~~  106 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH-EDQLKLNEQFKNN-KLLQGRGLPGTHDMKL  106 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTC-GGGSSSCSTTSBCHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCCh-HHHHHHhcccccc-chhhhccCcchhHHHH
Confidence            3578999999999999999999999987543    34443444332222 2222221100000 0001112333332222


Q ss_pred             HHHHHHHHHHcccc------cc---CCCcccCCchHHHHHHHH--HHhcCCcEEEEe-CCCCCC
Q 023354          155 ISINLGPLEELSNL------FK---ADLLLCESGGDNLAANFS--RELADYIIYIID-VSGGDK  206 (283)
Q Consensus       155 ~~~~~~~l~~l~~~------~~---~d~~i~eSgGq~q~~~ia--~al~~~~l~llD-pt~g~~  206 (283)
                      +   .+.+..+...      ..   ...-...||||+||+.+|  +++ .+.|+|+| ++.+.+
T Consensus       107 l---~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld  166 (290)
T 1odf_A          107 L---QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFN  166 (290)
T ss_dssp             H---HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCC
T ss_pred             H---HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCC
Confidence            2   2344443221      10   111112299999998876  556 78888888 777543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.54  E-value=3e-08  Score=83.38  Aligned_cols=27  Identities=30%  Similarity=0.431  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +|.+++|+||||||||||+++|+|+++
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            588999999999999999999999875

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.53  E-value=1.5e-08  Score=83.50  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=52.4

Q ss_pred             cCCcEEEEeCCCCCCchh---hc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHH-hh--cCCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR---KG----G--PGITQADLLVINKTDLASAIGADLAVMERDAL-RM--RDGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~--~~~~~i~~isa~~  259 (283)
                      ++..++++|++....+..   ..    .  ..-..+-.+|+||.|+....  ..+.+...+. ..  ....+++++|+++
T Consensus        90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  167 (189)
T 2x77_A           90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKT  167 (189)
T ss_dssp             CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCC
Confidence            467899999877543221   10    0  00133458999999987542  2222222221 11  1234789999999


Q ss_pred             CCCHHHHHHHHHHHHHHh
Q 023354          260 GLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       260 g~gi~~l~~~l~~~~~~~  277 (283)
                      +.|+++++++|.......
T Consensus       168 ~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          168 GDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CTTHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhc
Confidence            999999999998877543

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.53  E-value=9.9e-08  Score=97.45  Aligned_cols=34  Identities=21%  Similarity=0.081  Sum_probs=30.1

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHH
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALC  102 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~  102 (283)
                      ...+++++|... |++++|+||||||||||||.++
T Consensus       649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             eeecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            457788999865 9999999999999999999993

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.53  E-value=2.6e-08  Score=95.39  Aligned_cols=181  Identities=16%  Similarity=0.254  Sum_probs=97.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH----hccccCCchHHHHHhCCCCCCChHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM----RNGALPEERIRAVETGGCPHAAIRED  154 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~----~ig~v~q~~~~~i~~~g~~~~~~~~~  154 (283)
                      +..+|+|+|++|||||||++.|+..+... .++.++..|+......+..+    +.++ +       .++...... .  
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i-~-------v~~~~~~~d-p--  168 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARI-P-------FYGSYTEMD-P--  168 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTC-C-------EEECCCCSC-H--
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCc-e-------EEccCCCCC-H--
Confidence            46689999999999999999999776644 47888888875432211111    1110 0       000000011 1  


Q ss_pred             HHHHHHHHHHccccccCCCcccCCchHHH-----H---HHHHHHh-cCCcEEEEeCCCCCCchhhcCCccc--cc-CEEE
Q 023354          155 ISINLGPLEELSNLFKADLLLCESGGDNL-----A---ANFSREL-ADYIIYIIDVSGGDKIPRKGGPGIT--QA-DLLV  222 (283)
Q Consensus       155 ~~~~~~~l~~l~~~~~~d~~i~eSgGq~q-----~---~~ia~al-~~~~l~llDpt~g~~l~~~~~~~i~--~a-d~iv  222 (283)
                      .......+..+ ....+|.+++++.|...     .   ..+++++ .+.+++++|++.+.+..... ..+.  .. +.||
T Consensus       169 ~~i~~~al~~~-~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a-~~~~~~~~i~gvV  246 (504)
T 2j37_W          169 VIIASEGVEKF-KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQA-KAFKDKVDVASVI  246 (504)
T ss_dssp             HHHHHHHHHHH-HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHH-HHHHHHHCCCCEE
T ss_pred             HHHHHHHHHHH-HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHH-HHHHhhcCceEEE
Confidence            11112334433 22467888888555321     1   1122222 35789999998875422111 1111  22 5899


Q ss_pred             EEcCCcccccCChHHHHhHH------------HHhhcCCCCeEEEEeccCCC-HHHHHHHHHHH
Q 023354          223 INKTDLASAIGADLAVMERD------------ALRMRDGGPFIFAQVKHGLG-VEEIVNHILQA  273 (283)
Q Consensus       223 i~K~g~i~~~g~~~e~~~~~------------~~~~~~~~~i~~isa~~g~g-i~~l~~~l~~~  273 (283)
                      +||.|.....+.........            +....+..|.+++|+..|.| +.+|++++.+.
T Consensus       247 lNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          247 VTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             EECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             EeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99999875433222221100            00111233445678889999 99999988766

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.52  E-value=7.4e-08  Score=79.25  Aligned_cols=24  Identities=38%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+++|+|++|||||||++.+++..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999999853

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.52  E-value=3e-08  Score=81.43  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=47.9

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|.+....+..   .....     -..+-.++.||.|+....            .-..+...+ +.+.....+
T Consensus        79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  157 (184)
T 1m7b_A           79 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-MAKQIGAAT  157 (184)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HHHHHTCSE
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHH-HHHHcCCcE
Confidence            357889999876421111   00000     023447889999987421            011222222 222233468


Q ss_pred             eEEEEec-cCCCHHHHHHHHHHHH
Q 023354          252 FIFAQVK-HGLGVEEIVNHILQAW  274 (283)
Q Consensus       252 i~~isa~-~g~gi~~l~~~l~~~~  274 (283)
                      ++++||+ ++.|++++++++.+..
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHH
Confidence            8999999 6899999999987654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.51  E-value=4.2e-08  Score=89.78  Aligned_cols=61  Identities=16%  Similarity=0.201  Sum_probs=46.2

Q ss_pred             cccccCCCCCCCCCCCCccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d  117 (283)
                      .........|.. ...+++.+ |. .+|++++|+||||||||||+++|+|++.|+ |.+.+.+.+
T Consensus        46 i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           46 LLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             TTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             eeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            444444444432 23567777 66 569999999999999999999999999988 877776643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.51  E-value=3.2e-08  Score=83.30  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=47.7

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..|+++|.+....+..   .....     -...-.+|.||.|+....            .-..+.... +.+.....+
T Consensus       100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  178 (205)
T 1gwn_A          100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGAN-MAKQIGAAT  178 (205)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH-HHHHHTCSE
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHH-HHHHcCCCE
Confidence            357889999876421111   00000     023447889999987421            011122222 222233457


Q ss_pred             eEEEEec-cCCCHHHHHHHHHHHH
Q 023354          252 FIFAQVK-HGLGVEEIVNHILQAW  274 (283)
Q Consensus       252 i~~isa~-~g~gi~~l~~~l~~~~  274 (283)
                      ++++||+ ++.|++++++++.+..
T Consensus       179 ~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          179 YIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             EEEeeeccCCcCHHHHHHHHHHHH
Confidence            8999999 6899999999987654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.51  E-value=2.4e-08  Score=83.83  Aligned_cols=83  Identities=17%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             cCCcEEEEeCCCCCCchh---hcCCc-----ccccCEEEEEcCCcccccCC--------hHHHHhHHHHhhcCCCCeEEE
Q 023354          192 ADYIIYIIDVSGGDKIPR---KGGPG-----ITQADLLVINKTDLASAIGA--------DLAVMERDALRMRDGGPFIFA  255 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~~~~~-----i~~ad~ivi~K~g~i~~~g~--------~~e~~~~~~~~~~~~~~i~~i  255 (283)
                      ++..|+++|.+....+..   .....     -..+-.||+||.|+......        ..+.... +.......+++++
T Consensus        81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~  159 (212)
T 2j0v_A           81 ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE-LRKQIGAAAYIEC  159 (212)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH-HHHHHTCSEEEEC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHH-HHHHcCCceEEEc
Confidence            367899999876421111   00000     02345899999998654210        1122222 2222333488999


Q ss_pred             EeccCCCHHHHHHHHHHHHH
Q 023354          256 QVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       256 sa~~g~gi~~l~~~l~~~~~  275 (283)
                      |+++|.|+++++++|.....
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          160 SSKTQQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999987764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.49  E-value=3.4e-07  Score=76.07  Aligned_cols=83  Identities=16%  Similarity=0.157  Sum_probs=49.3

Q ss_pred             hcCCcEEEEeCCCCCCc---hh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGDKI---PR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l---~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      .++..+++.|.+.-..+   ..      .....-..+-.++.||.|+.....-..+...  ......+.+++++||++|.
T Consensus        80 ~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~--~~a~~~~~~~~e~SA~~g~  157 (192)
T 2cjw_A           80 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR--AXAVVFDXKFIETSAAVQH  157 (192)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH--HHHHHTTCEEEECBTTTTB
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH--HHHHHhCCceEEeccccCC
Confidence            45778899997753211   10      0000012344788999998643211222111  1112235678999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAWE  275 (283)
Q Consensus       262 gi~~l~~~l~~~~~  275 (283)
                      |++++++++.....
T Consensus       158 ~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          158 NVKELFEGIVRQVR  171 (192)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999987653

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.49  E-value=4e-08  Score=98.96  Aligned_cols=37  Identities=19%  Similarity=0.091  Sum_probs=33.2

Q ss_pred             CCCcccccccCCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           69 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        69 ~~~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ...+++++|..+|++++|+||||||||||||+|+|+.
T Consensus       595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            3578889998779999999999999999999999964

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.48  E-value=5.7e-08  Score=80.32  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=38.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      .+|++++|+||||||||||+++|++.  ++ |.|.+.+.++.....  ....++|++|..
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~   62 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSH   62 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchh
Confidence            46899999999999999999999997  44 778777655421110  012357777753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.48  E-value=1.5e-07  Score=84.13  Aligned_cols=84  Identities=12%  Similarity=0.079  Sum_probs=46.8

Q ss_pred             cCCcEEEEeCCC-CC---C---chhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhh-cCCCCeEEEEecc---C
Q 023354          192 ADYIIYIIDVSG-GD---K---IPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVKH---G  260 (283)
Q Consensus       192 ~~~~l~llDpt~-g~---~---l~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-~~~~~i~~isa~~---g  260 (283)
                      ++.+++++|+++ +.   +   +.... ........+|+||+|++.......+.+...+... ..+.++..+|+.+   +
T Consensus       168 ~d~iilvvd~~~~~~~~~~~~~i~~~~-~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~  246 (315)
T 1jwy_B          168 QNAIIVAVTPANTDLANSDALQLAKEV-DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAK  246 (315)
T ss_dssp             TTEEEEEEEESSSCSTTCSHHHHHHHH-CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSS
T ss_pred             CCeEEEEEEecCcchhhhHHHHHHHHh-CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccC
Confidence            356888888643 21   1   11111 1123455899999999865322233332110000 1223455566666   8


Q ss_pred             CCHHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWEA  276 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~~  276 (283)
                      .|+.++++.+..+++.
T Consensus       247 ~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          247 KSIRESLKSEILYFKN  262 (315)
T ss_dssp             CCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            8999999998888764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=98.48  E-value=3.5e-07  Score=83.17  Aligned_cols=23  Identities=30%  Similarity=0.242  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHh
Q 023354           81 AFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      ..+.+|+||||||||||+.+|+.
T Consensus        23 ~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999998744

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.48  E-value=6.5e-08  Score=81.70  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=28.2

Q ss_pred             cCCCcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      ..+|++++|+||||||||||+++|+|++.+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~   49 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ   49 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3569999999999999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.47  E-value=8e-08  Score=86.07  Aligned_cols=171  Identities=19%  Similarity=0.224  Sum_probs=93.5

Q ss_pred             ccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH-H---HHhccccCCchHHHHHhCCCCCC
Q 023354           75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE-F---LMRNGALPEERIRAVETGGCPHA  149 (283)
Q Consensus        75 ~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~-~---~~~ig~v~q~~~~~i~~~g~~~~  149 (283)
                      +++..++.+++++|++|+||||++..|++.+.+. +++.+.+.|+......+ +   ....++-        ...+....
T Consensus        92 i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~--------v~~~~~~~  163 (297)
T 1j8m_F           92 VIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP--------VYGEPGEK  163 (297)
T ss_dssp             CSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCC--------EECCTTCC
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeE--------EEecCCCC
Confidence            4555568999999999999999999999998866 78999998876432211 1   1111110        00010001


Q ss_pred             ChHHHHHHHHHHHHHccccccCCCcccCCchHHH-----HHH-----HHHHh-cCCcEEEEeCCCCCCchhhcCCcc--c
Q 023354          150 AIREDISINLGPLEELSNLFKADLLLCESGGDNL-----AAN-----FSREL-ADYIIYIIDVSGGDKIPRKGGPGI--T  216 (283)
Q Consensus       150 ~~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q-----~~~-----ia~al-~~~~l~llDpt~g~~l~~~~~~~i--~  216 (283)
                      . ...  ...+.++.+ ....+|.+++++.|...     .+.     +..++ .+..++++|++++.+...... .+  .
T Consensus       164 ~-p~~--~~~~~l~~~-~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~-~~~~~  238 (297)
T 1j8m_F          164 D-VVG--IAKRGVEKF-LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLAS-KFNQA  238 (297)
T ss_dssp             C-HHH--HHHHHHHHH-HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH-HHHHT
T ss_pred             C-HHH--HHHHHHHHH-HhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHH-HHHhh
Confidence            1 111  112334433 22467888887544322     111     12233 367899999877643221110 11  1


Q ss_pred             cc-CEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354          217 QA-DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       217 ~a-d~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l  266 (283)
                      .. ..+|+||.|.....|    ....  .....+.|+.+++  .|++++++
T Consensus       239 ~~i~gvVlnk~D~~~~~g----~~~~--~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          239 SKIGTIIITKMDGTAKGG----GALS--AVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             CTTEEEEEECGGGCTTHH----HHHH--HHHTTTCCEEEEE--CSSSTTCE
T ss_pred             CCCCEEEEeCCCCCcchH----HHHH--HHHHHCcCEEEEe--CCCChhhc
Confidence            22 478999988643211    1111  2223467888876  67777543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.47  E-value=1.2e-08  Score=91.78  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=31.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEE---EeecCCCCCHHHHHH-hccccCCch
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA---VTNDIFTKEDGEFLM-RNGALPEER  137 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i---~~~d~~~~~~~~~~~-~ig~v~q~~  137 (283)
                      .+|++++|+||||||||||+|+|+|+.++. |.|.+   .+.......  ++.+ .+|+++|.+
T Consensus       171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtp  232 (307)
T 1t9h_A          171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTP  232 (307)
T ss_dssp             GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCC
Confidence            368999999999999999999999999876 98887   444433221  1222 267777754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.46  E-value=8.4e-08  Score=89.88  Aligned_cols=47  Identities=19%  Similarity=0.234  Sum_probs=39.9

Q ss_pred             cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      +.+. +..+|.+++|+|||||||||||++|+|++.+. |+|.+++.++.
T Consensus       159 L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie  206 (418)
T 1p9r_A          159 FRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  206 (418)
T ss_dssp             HHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred             HHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence            4444 45678999999999999999999999999876 99999887764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.46  E-value=5.3e-09  Score=90.22  Aligned_cols=43  Identities=21%  Similarity=0.227  Sum_probs=30.9

Q ss_pred             ccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           75 RNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        75 ~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      ++|..  ++++|+|||||||||||++|+|++.|+ |.|.+.+.++.
T Consensus        23 ~~~~~--~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~   66 (227)
T 1qhl_A           23 FDLDE--LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEA   66 (227)
T ss_dssp             ECHHH--HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------
T ss_pred             EEEcC--cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcc
Confidence            44443  789999999999999999999999987 99998887763

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.46  E-value=5.1e-08  Score=89.37  Aligned_cols=87  Identities=16%  Similarity=0.134  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHhc---CCcEEEEeCCCCCCc-------hhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC
Q 023354          180 GDNLAANFSRELA---DYIIYIIDVSGGDKI-------PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDG  249 (283)
Q Consensus       180 Gq~q~~~ia~al~---~~~l~llDpt~g~~l-------~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~  249 (283)
                      ...++..+++..+   +.+|+++|+++....       ..... .....-.+|+||+|++.......+.+..  .....+
T Consensus       158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~~~~~~~~~~--~~~~~~  234 (360)
T 3t34_A          158 IVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVD-PSGDRTFGVLTKIDLMDKGTDAVEILEG--RSFKLK  234 (360)
T ss_dssp             HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSC-TTCTTEEEEEECGGGCCTTCCSHHHHTT--SSSCCS
T ss_pred             HHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhc-ccCCCEEEEEeCCccCCCcccHHHHHcC--cccccc
Confidence            3455666666654   456777776542211       11111 1123458999999998653333332222  122235


Q ss_pred             CCeEEEEeccCCCHHHHHHH
Q 023354          250 GPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       250 ~~i~~isa~~g~gi~~l~~~  269 (283)
                      .+++.++++++.++++.+.+
T Consensus       235 ~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          235 YPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             SCCEEECCCCHHHHHTTCCH
T ss_pred             CCeEEEEECChHHhccCCCH
Confidence            67888999888877654443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.45  E-value=9e-08  Score=87.61  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=31.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc--cCC-----Cc-EEEEeec
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL--RDK-----YS-LAAVTND  117 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~--~~~-----g~-i~i~~~d  117 (283)
                      .+|+++.|+||||||||||++.|++..  +|+     |+ +.+++.+
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            469999999999999999999999987  332     46 5555544

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.44  E-value=1.9e-08  Score=94.27  Aligned_cols=34  Identities=26%  Similarity=0.188  Sum_probs=31.2

Q ss_pred             cccccccCC-CcE--EEEEcCCCCcHHHHHHHHHhcc
Q 023354           72 ILSRNFNER-AFT--VGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        72 ~~~~~~~~~-g~~--v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.+++|..+ |++  ++|+||||||||||||+|+|+.
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            888888865 999  9999999999999999999974

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.44  E-value=1.7e-08  Score=97.42  Aligned_cols=83  Identities=17%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             cCCcEEEEeCCCCCCchhhcCC----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKGGP----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV  267 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~~~----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~  267 (283)
                      ++..|+++|+++...+......    .-...-.||+||.|+........+.+.+...  ..+.+++.+||++|.|+++++
T Consensus       122 ~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~--~~~~~~~~vSA~~g~gi~eL~  199 (535)
T 3dpu_A          122 SSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFP--AIENRFHRISCKNGDGVESIA  199 (535)
T ss_dssp             SEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCG--GGTTCEEECCC-----CTTHH
T ss_pred             CcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHH--hcCCceEEEecCcccCHHHHH
Confidence            4578899998776433221100    0024558999999987654333333332221  234679999999999999999


Q ss_pred             HHHHHHHHH
Q 023354          268 NHILQAWEA  276 (283)
Q Consensus       268 ~~l~~~~~~  276 (283)
                      +++......
T Consensus       200 ~~l~~~~~~  208 (535)
T 3dpu_A          200 KSLKSAVLH  208 (535)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhc
Confidence            999887643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.43  E-value=4.1e-08  Score=85.66  Aligned_cols=58  Identities=19%  Similarity=0.103  Sum_probs=45.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHH---hcccCC-CcEE--------EEeecCC-CCCHHHHHHhccccCCc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLA--------AVTNDIF-TKEDGEFLMRNGALPEE  136 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~---g~~~~~-g~i~--------i~~~d~~-~~~~~~~~~~ig~v~q~  136 (283)
                      .+|++|+|+||+||||||++++|+   |+..++ |.+.        ..+.++. .....++++.+++++|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   95 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS   95 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence            568999999999999999999999   877666 7766        5555553 23455677888888864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.43  E-value=2.8e-07  Score=81.53  Aligned_cols=57  Identities=23%  Similarity=0.157  Sum_probs=36.2

Q ss_pred             ccCEEEEEcCCcccccCChHHHHhHHHHhh-cCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          217 QADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      ..-.+|+||+|++.......+.+...+... ..+.+++.+||++|.|++++++++...
T Consensus       193 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          193 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             SSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             CeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            345899999999764322223222110000 013467889999999999999988763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.41  E-value=1.4e-07  Score=79.26  Aligned_cols=38  Identities=34%  Similarity=0.557  Sum_probs=30.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      .+|++++|+||||||||||+++|+|++.|  .+.++..+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--~i~~v~~d~   41 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGE--RVALLPMDH   41 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGG--GEEEEEGGG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCC--CeEEEecCc
Confidence            46899999999999999999999998765  455555443

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.40  E-value=5.6e-08  Score=89.78  Aligned_cols=55  Identities=15%  Similarity=0.396  Sum_probs=42.9

Q ss_pred             cCCCcEEEEEcCCCCcHHHHHHHHHhcccC--CCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           78 NERAFTVGIGGPVGTGKTALMLALCKFLRD--KYSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      ..+|++++|+||||||||||+++|++++.|  .|+|.+++.++..    .++..+++++|.
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~----~~~~~~~~v~Q~  189 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY----VFKHKKSIVNQR  189 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS----CCCCSSSEEEEE
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh----hhccCceEEEee
Confidence            356899999999999999999999999986  4888777765432    123457788774

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.40  E-value=7.9e-08  Score=82.37  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=20.7

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHH-hcccC
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALC-KFLRD  107 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~-g~~~~  107 (283)
                      -...++|.. +|++++|+||||||||||+++|+ +++++
T Consensus        16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             ------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred             ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            345677764 59999999999999999999999 98753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.39  E-value=7.3e-07  Score=74.98  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeec
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d  117 (283)
                      .+|++++|+||||||||||++.|++  .+.+.+.++..+
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~   54 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE   54 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence            5699999999999999999999999  444566666544

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.39  E-value=3.6e-08  Score=83.46  Aligned_cols=80  Identities=15%  Similarity=0.020  Sum_probs=49.9

Q ss_pred             cCCcEEEEeCCCCCC---chhhcCCc----ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGGPG----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~~~----i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      ++..++++|.+....   +.......    -...-.+|+||+|+....-.  +........  .+.+++.+|++++.|++
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~--~~~~~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK--AKSIVFHRK--KNLQYYDISAKSNYNFE  163 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSC--GGGCCHHHH--HTCEEEECBGGGTBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccccc--HHHHHHHHH--cCCEEEEEeCCCCCCHH
Confidence            467899999887421   11110000    02345899999998654211  111112222  24689999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          265 EIVNHILQAWE  275 (283)
Q Consensus       265 ~l~~~l~~~~~  275 (283)
                      +++++|.....
T Consensus       164 ~l~~~l~~~l~  174 (221)
T 3gj0_A          164 KPFLWLARKLI  174 (221)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.38  E-value=4.6e-07  Score=88.48  Aligned_cols=83  Identities=25%  Similarity=0.274  Sum_probs=54.7

Q ss_pred             HhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC--CCeEEEEeccCCCH
Q 023354          190 ELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDG--GPFIFAQVKHGLGV  263 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~--~~i~~isa~~g~gi  263 (283)
                      ..+|..|+|+|++.+...+....    ......-.+++||.|+..+  ...+ ..+.+.+....  .+++++||++|.|+
T Consensus        95 ~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a--~~~~-v~~el~~~lg~~~~~vi~vSAktg~GI  171 (600)
T 2ywe_A           95 AACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSA--DVDR-VKKQIEEVLGLDPEEAILASAKEGIGI  171 (600)
T ss_dssp             HTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC--CHHH-HHHHHHHTSCCCGGGCEECBTTTTBSH
T ss_pred             HhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCcccc--CHHH-HHHHHHHhhCCCcccEEEEEeecCCCc
Confidence            34578999999988754322110    0113345899999999765  2323 23334443321  25899999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      +++++++....+
T Consensus       172 ~~Lle~I~~~lp  183 (600)
T 2ywe_A          172 EEILEAIVNRIP  183 (600)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             hHHHHHHHHhcc
Confidence            999999987664

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.38  E-value=1.1e-06  Score=82.76  Aligned_cols=98  Identities=12%  Similarity=0.071  Sum_probs=54.7

Q ss_pred             CCCcccCCchHHHHHHHHH---HhcCCcEEEEeCCCCCC-------chh-hc---CCccccc-CEEEEEcCCcccccC--
Q 023354          171 ADLLLCESGGDNLAANFSR---ELADYIIYIIDVSGGDK-------IPR-KG---GPGITQA-DLLVINKTDLASAIG--  233 (283)
Q Consensus       171 ~d~~i~eSgGq~q~~~ia~---al~~~~l~llDpt~g~~-------l~~-~~---~~~i~~a-d~ivi~K~g~i~~~g--  233 (283)
                      ....++++.|+.+......   .-+|..|+++|++.+..       -+. +.   ....... -.+++||.|+....-  
T Consensus        95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~  174 (439)
T 3j2k_7           95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN  174 (439)
T ss_pred             eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence            3455667888765443332   23578999999887631       010 00   0011223 368999999864210  


Q ss_pred             ChHHHHhHHH----HhhcC----CCCeEEEEeccCCCHHHHHH
Q 023354          234 ADLAVMERDA----LRMRD----GGPFIFAQVKHGLGVEEIVN  268 (283)
Q Consensus       234 ~~~e~~~~~~----~~~~~----~~~i~~isa~~g~gi~~l~~  268 (283)
                      ...+...+.+    ....+    ..+++++||++|.|+.++.+
T Consensus       175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            1112222222    12211    46899999999999998544

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.36  E-value=3.9e-07  Score=89.02  Aligned_cols=83  Identities=16%  Similarity=0.255  Sum_probs=55.0

Q ss_pred             HhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC--CCCeEEEEeccCCCH
Q 023354          190 ELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDLASAIGADLAVMERDALRMRD--GGPFIFAQVKHGLGV  263 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~--~~~i~~isa~~g~gi  263 (283)
                      ..+|..|+|+|++.+...+....    ......-.+++||.|+..+  ...+.. +.+.+.+.  ..+++++||++|.|+
T Consensus        93 ~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a--~~~~v~-~ei~~~lg~~~~~vi~vSAktg~GI  169 (599)
T 3cb4_D           93 AACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA--DPERVA-EEIEDIVGIDATDAVRCSAKTGVGV  169 (599)
T ss_dssp             HHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC--CHHHHH-HHHHHHTCCCCTTCEEECTTTCTTH
T ss_pred             HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccc--cHHHHH-HHHHHHhCCCcceEEEeecccCCCc
Confidence            34588999999988754332110    0113345899999999765  233332 33433332  236899999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      +++++++....+
T Consensus       170 ~~Ll~~I~~~lp  181 (599)
T 3cb4_D          170 QDVLERLVRDIP  181 (599)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             hhHHHHHhhcCC
Confidence            999999987764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.36  E-value=4.3e-07  Score=78.03  Aligned_cols=27  Identities=19%  Similarity=0.172  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +...|+|+|++|||||||++.|+|...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence            356899999999999999999999654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.36  E-value=3.5e-08  Score=96.72  Aligned_cols=58  Identities=10%  Similarity=0.014  Sum_probs=37.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccC-C-CcEEEEeecCCC--C-CHHHHHHhccccCCch
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRD-K-YSLAAVTNDIFT--K-EDGEFLMRNGALPEER  137 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~-g~i~i~~~d~~~--~-~~~~~~~~ig~v~q~~  137 (283)
                      .-+.++|+|||||||||||++|+|++.| + |.|.+.+.++..  . ....+++.+||++|+.
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~  106 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI  106 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence            3356999999999999999999999877 5 888887766421  1 1123456799999864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.36  E-value=2.6e-07  Score=78.30  Aligned_cols=29  Identities=28%  Similarity=0.340  Sum_probs=26.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      .+|++++|+||||||||||+++|+|.+.+
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            57999999999999999999999996554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.34  E-value=1.7e-07  Score=75.34  Aligned_cols=30  Identities=20%  Similarity=0.171  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g  109 (283)
                      +|+.++|+||||||||||++++++.+.+.|
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g   64 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG   64 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999887665

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.34  E-value=1.8e-07  Score=83.59  Aligned_cols=82  Identities=10%  Similarity=0.045  Sum_probs=48.6

Q ss_pred             cCCcEEEEeCCCCCCchh-------hcCC-cccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGDKIPR-------KGGP-GITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~-------~~~~-~i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~~  251 (283)
                      ++..++++|.+....+..       .... .-..+-.+|+||+|+....            .-..+.... +.+.....+
T Consensus       227 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~  305 (332)
T 2wkq_A          227 TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA-MAKEIGAVK  305 (332)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHH-HHHHTTCSE
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHH-HHHHcCCcE
Confidence            357889999877422111       0000 0033458999999986431            011111111 122222248


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ++++||++|.|+++++++|....
T Consensus       306 ~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          306 YLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHHH
Confidence            89999999999999999997754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.34  E-value=1.7e-07  Score=89.42  Aligned_cols=95  Identities=16%  Similarity=0.122  Sum_probs=51.6

Q ss_pred             CCCcccCCchHHHHHHHHH---HhcCCcEEEEeCCCCCC-----c--hhhc----CCcccc-cCEEEEEcCCcccccCCh
Q 023354          171 ADLLLCESGGDNLAANFSR---ELADYIIYIIDVSGGDK-----I--PRKG----GPGITQ-ADLLVINKTDLASAIGAD  235 (283)
Q Consensus       171 ~d~~i~eSgGq~q~~~ia~---al~~~~l~llDpt~g~~-----l--~~~~----~~~i~~-ad~ivi~K~g~i~~~g~~  235 (283)
                      ....++++.|+.+......   .-+|..|+|+|++.+..     +  +...    ...... .-.|++||+|++.+....
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence            3455667777654333322   23478999999887621     1  1000    001121 247789999987642222


Q ss_pred             HHHHhHHHHhh----cC---CCCeEEEEeccCCCHHH
Q 023354          236 LAVMERDALRM----RD---GGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       236 ~e~~~~~~~~~----~~---~~~i~~isa~~g~gi~~  265 (283)
                      .+...+.+...    ..   ..+++++||++|.|+++
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            22222222222    11   46789999999999874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.34  E-value=1.2e-07  Score=82.57  Aligned_cols=82  Identities=9%  Similarity=0.059  Sum_probs=47.2

Q ss_pred             cCCcEEEEeCCCCCCchh--------hcCCcccccCEEEEE-cCCcccccCChHHH--------HhHHHHhhcC----CC
Q 023354          192 ADYIIYIIDVSGGDKIPR--------KGGPGITQADLLVIN-KTDLASAIGADLAV--------MERDALRMRD----GG  250 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~--------~~~~~i~~ad~ivi~-K~g~i~~~g~~~e~--------~~~~~~~~~~----~~  250 (283)
                      ++.+|+|+|++.......        ..+.....+..++++ |.|+...  ...+.        +...+.....    ..
T Consensus       106 ~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  183 (260)
T 2xtp_A          106 PHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAACGGRICAFN  183 (260)
T ss_dssp             CSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHHhCCeEEEec
Confidence            468899999875211111        011111345678888 9998732  22221        1112222111    22


Q ss_pred             CeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          251 PFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       251 ~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      + +.+||+++.|+++++++|......
T Consensus       184 ~-~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          184 N-RAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             T-TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-cccccccHHHHHHHHHHHHHHHHh
Confidence            2 678999999999999999887654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.34  E-value=2.9e-07  Score=81.11  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=38.5

Q ss_pred             CCcEEEEeCCC-CCCc-----hhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhh--cCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSG-GDKI-----PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~-g~~l-----~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~--~~~~~i~~isa~~g~gi~  264 (283)
                      +..+++++++. +...     .+....  ...-.+|+||+|++..  ...+.+.+.+.+.  ..+.+++.+|++++.|++
T Consensus       117 ~~~l~~i~~~~~~~~~~d~~~l~~l~~--~~pvi~V~nK~D~~~~--~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~  192 (274)
T 3t5d_A          117 QCCLYFIAPSGHGLKPLDIEFMKRLHE--KVNIIPLIAKADTLTP--EECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN  192 (274)
T ss_dssp             CEEEEEECSCCSSCCHHHHHHHHHHTT--TSCEEEEESSGGGSCH--HHHHHHHHHHHHHHHHTTCCCCCC---------
T ss_pred             eEEEEEecCCCCCCCHHHHHHHHHHhc--cCCEEEEEeccCCCCH--HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHH
Confidence            45788888765 3211     111111  3455899999998744  2223332333322  246678889999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          265 EIVNHILQAWE  275 (283)
Q Consensus       265 ~l~~~l~~~~~  275 (283)
                      ++.++|....+
T Consensus       193 ~l~~~l~~~~p  203 (274)
T 3t5d_A          193 KLVKKIKDRLP  203 (274)
T ss_dssp             --CHHHHHTCS
T ss_pred             HHHHHHhcCCC
Confidence            99999887543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.34  E-value=5.1e-07  Score=87.01  Aligned_cols=26  Identities=19%  Similarity=0.491  Sum_probs=23.2

Q ss_pred             CeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          251 PFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       251 ~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      |++++||++|.|+++|++++....+.
T Consensus       252 PV~~gSA~~~~GV~~Lld~i~~~~p~  277 (528)
T 3tr5_A          252 PIFFGSAINNFGVGELLDAFVKEAPP  277 (528)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             EEEeccccCCccHHHHHHHHHHhCCC
Confidence            78899999999999999999887653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.33  E-value=2.3e-07  Score=78.53  Aligned_cols=48  Identities=21%  Similarity=0.117  Sum_probs=38.0

Q ss_pred             Ccccccc--cCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC
Q 023354           71 PILSRNF--NERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (283)
Q Consensus        71 ~~~~~~~--~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~  118 (283)
                      .++...+  -.+|++++|+||||||||||++.|++.+.+. +.+.+.+.+.
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            3444443  2479999999999999999999999877654 7888877654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.32  E-value=2.2e-07  Score=82.17  Aligned_cols=63  Identities=17%  Similarity=0.113  Sum_probs=46.5

Q ss_pred             CcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           71 PILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        71 ~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      .+.+.++..+ |  ++|+||||||||||+++|++.+.+ +.+.+.+.++......+..+.+++++|.
T Consensus        35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~   98 (274)
T 2x8a_A           35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQR   98 (274)
T ss_dssp             HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHH
Confidence            3455566544 5  999999999999999999998765 5777777776554444555667777765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.31  E-value=1.7e-07  Score=77.75  Aligned_cols=81  Identities=16%  Similarity=0.164  Sum_probs=46.8

Q ss_pred             cCCcEEEEeCCCC--CC---chhhcC----CcccccCEEEEEcCCcccccC---ChHHHHhH---HHHhh---cCCCCeE
Q 023354          192 ADYIIYIIDVSGG--DK---IPRKGG----PGITQADLLVINKTDLASAIG---ADLAVMER---DALRM---RDGGPFI  253 (283)
Q Consensus       192 ~~~~l~llDpt~g--~~---l~~~~~----~~i~~ad~ivi~K~g~i~~~g---~~~e~~~~---~~~~~---~~~~~i~  253 (283)
                      ++..|+++|.+..  ..   +.....    ..-...-.+|.||+|++....   ...++...   .+.+.   ..+.+++
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  175 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY  175 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence            5788999998774  11   110000    001334588999999865310   01111111   11111   2356789


Q ss_pred             EEEeccCCCHHHHHHHHHHH
Q 023354          254 FAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       254 ~isa~~g~gi~~l~~~l~~~  273 (283)
                      ++||++ .|++++++.+.+.
T Consensus       176 e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          176 LTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             EECTTS-THHHHHHHHHHHH
T ss_pred             EEEech-hhHHHHHHHHHHH
Confidence            999999 9999999988653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.31  E-value=9.3e-07  Score=82.39  Aligned_cols=101  Identities=17%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             CcccCCchHHHHHHHH-HH--hcCCcEEEEeCCCCC-Cchhhc----CCcccc-cCEEEEEcCCcccccCChHHHHhHHH
Q 023354          173 LLLCESGGDNLAANFS-RE--LADYIIYIIDVSGGD-KIPRKG----GPGITQ-ADLLVINKTDLASAIGADLAVMERDA  243 (283)
Q Consensus       173 ~~i~eSgGq~q~~~ia-~a--l~~~~l~llDpt~g~-~l~~~~----~~~i~~-ad~ivi~K~g~i~~~g~~~e~~~~~~  243 (283)
                      ..++++.|+....... +.  .+|..|+++|++.+. ..+...    ...+.. .-.+++||.|+....  ..+...+.+
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~--~~~~~~~~i  162 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE--KALENYRQI  162 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH--HHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH--HHHHHHHHH
Confidence            3455577765432222 21  247899999998764 211110    001122 235779999987542  111111222


Q ss_pred             Hhh-----cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          244 LRM-----RDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       244 ~~~-----~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .+.     ....+++++|+++|.|+++|+++|....+
T Consensus       163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            222     13578999999999999999999987543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.31  E-value=1.7e-06  Score=80.57  Aligned_cols=103  Identities=15%  Similarity=0.127  Sum_probs=53.9

Q ss_pred             CcccCCchHHHHHHHH-HH--hcCCcEEEEeCCCCC-Cchh-hc---CCcccc-cCEEEEEcCCcccccC--ChHHHHhH
Q 023354          173 LLLCESGGDNLAANFS-RE--LADYIIYIIDVSGGD-KIPR-KG---GPGITQ-ADLLVINKTDLASAIG--ADLAVMER  241 (283)
Q Consensus       173 ~~i~eSgGq~q~~~ia-~a--l~~~~l~llDpt~g~-~l~~-~~---~~~i~~-ad~ivi~K~g~i~~~g--~~~e~~~~  241 (283)
                      ..++++.|+..-.... +.  .+|..|+++|++.+. ..+. +.   ...+.. .-.+++||.|+.....  ...+.+.+
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~  162 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKE  162 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence            3455577765433222 11  236889999988763 2111 00   001111 2368999999976531  12222222


Q ss_pred             HHHhh-cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          242 DALRM-RDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       242 ~~~~~-~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .+... ....+++++||++|.|+++|+++|....+
T Consensus       163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            22221 23578999999999999999999987543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.31  E-value=4e-07  Score=75.07  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEE
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAV  114 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~  114 (283)
                      +|++++|+||+|||||||+++|++.+++.  +.+...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~t   40 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHT   40 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeecc
Confidence            58899999999999999999999987642  555443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.28  E-value=1.9e-06  Score=85.74  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=24.4

Q ss_pred             cCCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           78 NERAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ..++..|+|+|.+|||||||+|+|+|.
T Consensus        66 ~~~~~~V~VvG~~naGKSSLlNaLlg~   92 (695)
T 2j69_A           66 QQGVFRLLVLGDMKRGKSTFLNALIGE   92 (695)
T ss_dssp             HHCCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            346789999999999999999999985

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.27  E-value=2e-08  Score=96.83  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhh-------cCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRM-------RDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-------~~~~~i~~isa~~g  260 (283)
                      +|..|+++|++.+...+...    .......-.+++||+|+......  . ....+...       ....+++++||++|
T Consensus        76 aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~--~-v~~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           76 TDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPE--K-VKKELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             BSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCC--S-SSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchH--H-HHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            57889999988764322110    00112345889999998754211  1 11112211       12347889999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAWE  275 (283)
Q Consensus       261 ~gi~~l~~~l~~~~~  275 (283)
                      .|+++|+++|....+
T Consensus       153 ~GI~eLle~I~~l~~  167 (537)
T 3izy_P          153 ENMMALAEATIALAE  167 (537)
T ss_dssp             CSSHHHHHHHHHHHT
T ss_pred             CCchhHHHHHHHhhh
Confidence            999999999987764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.26  E-value=1.7e-07  Score=87.28  Aligned_cols=25  Identities=40%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ...++|+|..|+|||||++.|++..
T Consensus        11 ~~~I~iiG~~~~GKSTLi~~L~~~~   35 (405)
T 2c78_A           11 HVNVGTIGHVDHGKTTLTAALTYVA   35 (405)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHhhh
Confidence            5689999999999999999999853

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.24  E-value=6.1e-07  Score=82.33  Aligned_cols=39  Identities=21%  Similarity=0.417  Sum_probs=31.5

Q ss_pred             cCCCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEee
Q 023354           78 NERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTN  116 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~  116 (283)
                      ..++.+++|+|||||||||||++|+|++.++  +.|.....
T Consensus       120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed  160 (356)
T 3jvv_A          120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED  160 (356)
T ss_dssp             HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC
Confidence            3567799999999999999999999999875  45544443

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.24  E-value=4.7e-09  Score=87.54  Aligned_cols=82  Identities=24%  Similarity=0.206  Sum_probs=43.2

Q ss_pred             cCCcEEEEeCCCCCCch---hhc---CC--cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---RKG---GP--GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~---~~--~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++.+++++|++....+.   ...   ..  .-...-.+|+||+|+........+......  ...+.+++++|++++.|+
T Consensus       106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~--~~~~~~~~~vSA~~g~gv  183 (199)
T 3l0i_B          106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA--DSLGIPFLETSAKNATNV  183 (199)
T ss_dssp             CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH--HTTTCCBCCCCC---HHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH--HHcCCeEEEEECCCCCCH
Confidence            35678888987653211   100   00  012344788999998654222212222222  223578999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      ++++++|...+.
T Consensus       184 ~~l~~~l~~~l~  195 (199)
T 3l0i_B          184 EQSFMTMAAEIK  195 (199)
T ss_dssp             HHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHH
Confidence            999999876543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.24  E-value=1.1e-06  Score=80.97  Aligned_cols=83  Identities=11%  Similarity=0.071  Sum_probs=50.4

Q ss_pred             HhcCCcEEEEeCCCCCCchhhc----CCcccccC-EEEEE-cCCcccccCChHHHHhHHHHhhc-----CCCCeEE--EE
Q 023354          190 ELADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVIN-KTDLASAIGADLAVMERDALRMR-----DGGPFIF--AQ  256 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad-~ivi~-K~g~i~~~g~~~e~~~~~~~~~~-----~~~~i~~--is  256 (283)
                      ..+|..|+++| +.+...+.+.    ........ .+++| |.|+ ..  ...+...+.+.+..     ...|+++  +|
T Consensus        82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~--~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           82 NISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM--HAIDELKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH--HHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH--HHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            34678899999 6653211110    00112334 78899 9998 32  11122222233222     2468999  99


Q ss_pred             ecc---CCCHHHHHHHHHHHHHH
Q 023354          257 VKH---GLGVEEIVNHILQAWEA  276 (283)
Q Consensus       257 a~~---g~gi~~l~~~l~~~~~~  276 (283)
                      |++   +.|+++|+++|....+.
T Consensus       158 A~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          158 KSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhhccc
Confidence            999   99999999999877653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.23  E-value=3.4e-07  Score=76.66  Aligned_cols=46  Identities=22%  Similarity=0.309  Sum_probs=36.1

Q ss_pred             cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcE--EEEeecC
Q 023354           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSL--AAVTNDI  118 (283)
Q Consensus        73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i--~i~~~d~  118 (283)
                      .+..+. .+|++++|+||+|||||||+++|++.+...|.+  .+++.++
T Consensus        16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            344444 469999999999999999999999988744776  6665544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.22  E-value=9e-07  Score=74.23  Aligned_cols=44  Identities=30%  Similarity=0.377  Sum_probs=36.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE  122 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~  122 (283)
                      .++.+++|+|++|||||||++.|++++.+. |.+.+.+.|.....
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~   64 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE   64 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence            458999999999999999999999998765 78888777665433

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.22  E-value=4.8e-07  Score=74.79  Aligned_cols=36  Identities=25%  Similarity=0.134  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      |++++|+||||||||||+++|++.  ..|.+.+.+.++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~--~~g~~~i~~d~~   37 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ--LDNSAYIEGDII   37 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH--SSSEEEEEHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc--cCCeEEEcccch
Confidence            578999999999999999999872  236777776544

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.21  E-value=2e-06  Score=85.50  Aligned_cols=27  Identities=11%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             CCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          250 GPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       250 ~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      .|+++.||.++.|++.|++.+....+.
T Consensus       256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs  282 (691)
T 1dar_A          256 TPVFLGSALKNKGVQLLLDAVVDYLPS  282 (691)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence            578999999999999999999988753

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.21  E-value=7.5e-07  Score=85.50  Aligned_cols=45  Identities=18%  Similarity=0.216  Sum_probs=36.4

Q ss_pred             cccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354           73 LSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (283)
Q Consensus        73 ~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d  117 (283)
                      ..+++. .+|..++|+|||||||||||++|+|+++|+ |.+.+.+..
T Consensus       251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            344444 458899999999999999999999999987 777776543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.21  E-value=1.2e-06  Score=81.35  Aligned_cols=104  Identities=12%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             CCCcccCCchHHHHHHHHHH-h--cCCcEEEEeCCCCCCchhhc----CCcccccC-EEEEEcCCcccccCChHHHH---
Q 023354          171 ADLLLCESGGDNLAANFSRE-L--ADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADLAVM---  239 (283)
Q Consensus       171 ~d~~i~eSgGq~q~~~ia~a-l--~~~~l~llDpt~g~~l~~~~----~~~i~~ad-~ivi~K~g~i~~~g~~~e~~---  239 (283)
                      ....++++.|+.+....... +  +|..|+++|++.+...+...    ........ .+++||.|+.... ...+..   
T Consensus        66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~-~~~~~~~~~  144 (397)
T 1d2e_A           66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVELE  144 (397)
T ss_dssp             CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred             eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH-HHHHHHHHH
Confidence            34445667777553332222 2  46889999998874322110    00112333 5789999987421 111222   


Q ss_pred             -hHHHHhhcC---CCCeEEEEeccCCC----------HHHHHHHHHHHHH
Q 023354          240 -ERDALRMRD---GGPFIFAQVKHGLG----------VEEIVNHILQAWE  275 (283)
Q Consensus       240 -~~~~~~~~~---~~~i~~isa~~g~g----------i~~l~~~l~~~~~  275 (283)
                       .+.+.....   ..+++++||++|.+          +.+|+++|....+
T Consensus       145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence             222222222   36899999999764          8888888877553

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.20  E-value=2.5e-06  Score=83.25  Aligned_cols=84  Identities=18%  Similarity=0.181  Sum_probs=51.1

Q ss_pred             cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCC-------------hH---HHHh-------HHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGA-------------DL---AVME-------RDAL  244 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~-------------~~---e~~~-------~~~~  244 (283)
                      +|..|+++|++.|...+...    ......+-.+++||+|+......             ..   +.+.       ..+.
T Consensus        94 aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~  173 (594)
T 1g7s_A           94 ADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLH  173 (594)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            46889999998874322110    00113345899999999742110             00   1111       1111


Q ss_pred             hh-------------cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          245 RM-------------RDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       245 ~~-------------~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      +.             ....|++++||++|.|+++|+++|....+
T Consensus       174 e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          174 EEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            11             12247899999999999999999987765

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.16  E-value=1.1e-06  Score=73.18  Aligned_cols=30  Identities=20%  Similarity=0.371  Sum_probs=27.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      .+|++++|+||+|||||||+++|++++.|+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~   33 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTS   33 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence            358999999999999999999999998664

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.16  E-value=1.3e-07  Score=86.43  Aligned_cols=55  Identities=22%  Similarity=0.146  Sum_probs=34.5

Q ss_pred             cCEEEEEcCCcccccCChHHHHhHHHHhh-cCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          218 ADLLVINKTDLASAIGADLAVMERDALRM-RDGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~-~~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      .-.+|+||+|++.......+.+....... ..+.+++.+|++++.|++++++++..
T Consensus       199 ~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          199 RTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             ceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            44899999999754221222222110000 11346788999999999999888865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.16  E-value=1.2e-06  Score=73.95  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=27.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      .+|++++|+||||||||||+++|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            56999999999999999999999998875

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.14  E-value=1.1e-07  Score=89.26  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             cCCcEEEEeCCCCCCchhh--cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRK--GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNH  269 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~--~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~  269 (283)
                      ++..|+++|+.........  ........-.+|+||.|+......  +... . .....+.+++.+|+++|.|+++++++
T Consensus       114 aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~-~-l~~~~g~~v~~vSAktg~gI~eL~~~  189 (423)
T 3qq5_A          114 ADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKG-L-YESRYEAKVLLVSALQKKGFDDIGKT  189 (423)
T ss_dssp             CSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--HHHH-H-SSCCTTCCCCCCSSCCTTSTTTHHHH
T ss_pred             CCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--HHHH-H-HHHHcCCCEEEEECCCCCCHHHHHHH
Confidence            5678899998221110000  000113455899999999866322  2211 1 22234678999999999999999999


Q ss_pred             HHHHHH
Q 023354          270 ILQAWE  275 (283)
Q Consensus       270 l~~~~~  275 (283)
                      |.+..+
T Consensus       190 L~~~l~  195 (423)
T 3qq5_A          190 ISEILP  195 (423)
T ss_dssp             HHHHSC
T ss_pred             HHHhhh
Confidence            988763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.14  E-value=5.6e-07  Score=77.77  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH---hcccCC-CcEEEE
Q 023354           80 RAFTVGIGGPVGTGKTALMLALC---KFLRDK-YSLAAV  114 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~---g~~~~~-g~i~i~  114 (283)
                      ++++++|+||||||||||+++|+   |+..++ |.+.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~   64 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE   64 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence            47899999999999999999999   877665 665443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.14  E-value=2.5e-06  Score=76.28  Aligned_cols=161  Identities=16%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             ccCCCcEEEEEcCCCCcHHHHHHHHHhcccC-CC-cEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC--ChH
Q 023354           77 FNERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA--AIR  152 (283)
Q Consensus        77 ~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~g-~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~--~~~  152 (283)
                      +..+|.+++|+|+|||||||+++.|++.+.+ .| +|.+++.|.......+.....+          ...+.+..  ...
T Consensus       101 ~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~----------~~~gl~~~~~~~~  170 (296)
T 2px0_A          101 EPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYA----------ELLQAPLEVCYTK  170 (296)
T ss_dssp             CCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHH----------TTTTCCCCBCSSH
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHH----------HhcCCCeEecCCH
Confidence            3457899999999999999999999999986 47 8999998875433221111100          00111110  111


Q ss_pred             HHHHHHHHHHHHccccccCCCcccCCchH-----HHHHHHHHHhc----CCcEEEEeCCCCC-Cchh---hcCCcccccC
Q 023354          153 EDISINLGPLEELSNLFKADLLLCESGGD-----NLAANFSRELA----DYIIYIIDVSGGD-KIPR---KGGPGITQAD  219 (283)
Q Consensus       153 ~~~~~~~~~l~~l~~~~~~d~~i~eSgGq-----~q~~~ia~al~----~~~l~llDpt~g~-~l~~---~~~~~i~~ad  219 (283)
                      ..+   ...+..+   ..+|.++.++.|.     .+...+...+.    +..++++|.+.+. ++..   ... .+. ..
T Consensus       171 ~~l---~~al~~~---~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~-~~  242 (296)
T 2px0_A          171 EEF---QQAKELF---SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS-SVP-VN  242 (296)
T ss_dssp             HHH---HHHHHHG---GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS-SSC-CC
T ss_pred             HHH---HHHHHHh---cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh-cCC-CC
Confidence            111   2333333   4578877774442     12222332232    2458889887662 2221   111 122 35


Q ss_pred             EEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          220 LLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       220 ~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      .++++|.|.-...|   ..+ . +.. ..+.|+.++.  .|+++
T Consensus       243 giVltk~D~~~~~g---~~~-~-~~~-~~~~pi~~i~--~ge~v  278 (296)
T 2px0_A          243 QYIFTKIDETTSLG---SVF-N-ILA-ESKIGVGFMT--NGQNV  278 (296)
T ss_dssp             EEEEECTTTCSCCH---HHH-H-HHH-TCSCCCSEEC--CSSCT
T ss_pred             EEEEeCCCcccchh---HHH-H-HHH-HHCcCEEEEE--CCCCC
Confidence            78899988754322   222 1 122 3467776664  45555

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.13  E-value=1.4e-06  Score=74.64  Aligned_cols=37  Identities=32%  Similarity=0.555  Sum_probs=32.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      .+|.+++|.|++|||||||+++|+++   .|.+.+.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~   54 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPV   54 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCH
Confidence            46999999999999999999999997   57788877654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.11  E-value=7.7e-06  Score=81.43  Aligned_cols=26  Identities=8%  Similarity=0.119  Sum_probs=23.3

Q ss_pred             CCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          250 GPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       250 ~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .|+++.|++++.|++.|++.+....+
T Consensus       262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP  287 (704)
T 2rdo_7          262 ILVTCGSAFKNKGVQAMLDAVIDYLP  287 (704)
T ss_pred             eEEEEeecccCccHHHHHHHHHHHCC
Confidence            57999999999999999999988764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.11  E-value=9.7e-07  Score=81.05  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ..|+|+|++|+|||||++.|++...
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~~~   62 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLTDL   62 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTCCC
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            4689999999999999999988643

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.11  E-value=1.9e-06  Score=70.08  Aligned_cols=53  Identities=13%  Similarity=0.099  Sum_probs=37.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHH-hccccCCc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLM-RNGALPEE  136 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~-~ig~v~q~  136 (283)
                      .+|++++|+|+|||||||+++.|++.+   |.+.+++.++..  ...+.+ ..|+.+|+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~~--~~~~~~~~~g~~~~~   59 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHP--RRNIEKMASGEPLND   59 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence            358899999999999999999999865   667777665542  112222 35666554

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.10  E-value=1.6e-06  Score=73.04  Aligned_cols=27  Identities=22%  Similarity=0.172  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +|.+++|+||+|||||||+++|++.++
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            688999999999999999999999865

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.08  E-value=3.6e-06  Score=83.64  Aligned_cols=27  Identities=11%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             CCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          250 GPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       250 ~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      .|+++.|+.++.|++.|++.+...++.
T Consensus       254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs  280 (693)
T 2xex_A          254 YPVLCGTAFKNKGVQLMLDAVIDYLPS  280 (693)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             eeEEEeecccCcCHHHHHHHHHHHCCC
Confidence            478899999999999999999988753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.08  E-value=5.9e-07  Score=88.07  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             CCcccCCchHHHHHHHHHH---hcCCcEEEEeCCCCC-----Cc--hh-hc---CCccccc-CEEEEEcCCcccccCChH
Q 023354          172 DLLLCESGGDNLAANFSRE---LADYIIYIIDVSGGD-----KI--PR-KG---GPGITQA-DLLVINKTDLASAIGADL  236 (283)
Q Consensus       172 d~~i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~-----~l--~~-~~---~~~i~~a-d~ivi~K~g~i~~~g~~~  236 (283)
                      ...++++.|+.+.......   .++..|+|+|++.+.     .+  +. +.   ....... -.|++||+|++.......
T Consensus       246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~  325 (611)
T 3izq_1          246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF  325 (611)
T ss_dssp             EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHH
T ss_pred             eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHH
Confidence            4456668887554433322   236889999987641     00  00 00   0011112 367899999876321222


Q ss_pred             HHHhHHHHh----hcC---CCCeEEEEeccCCCHHHH
Q 023354          237 AVMERDALR----MRD---GGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       237 e~~~~~~~~----~~~---~~~i~~isa~~g~gi~~l  266 (283)
                      +.....+..    ...   ..+++++||++|.|+.++
T Consensus       326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            222222222    111   468999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.06  E-value=3.9e-06  Score=75.85  Aligned_cols=44  Identities=25%  Similarity=0.425  Sum_probs=35.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc--CC-CcEEEEeecCCCCCHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR--DK-YSLAAVTNDIFTKEDG  124 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~--~~-g~i~i~~~d~~~~~~~  124 (283)
                      ..+++|+||+|||||||+++|.+++.  ++ |.+.++..|.......
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~  138 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNA  138 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchh
Confidence            45899999999999999999999987  34 7888888776554443

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.06  E-value=1.6e-07  Score=89.77  Aligned_cols=81  Identities=16%  Similarity=0.259  Sum_probs=47.0

Q ss_pred             cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCCh-HHHHhH-HH-Hhh-cCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGAD-LAVMER-DA-LRM-RDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~-~e~~~~-~~-~~~-~~~~~i~~isa~~g~gi  263 (283)
                      +|..++++|++.+...+...    .......-.+++||.|+..+.... .+.+.. .. .+. ....+++++||++|.|+
T Consensus        75 aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI  154 (501)
T 1zo1_I           75 TDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI  154 (501)
T ss_dssp             CSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred             CCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence            46789999987763221100    001123458999999986542110 000000 00 000 11368999999999999


Q ss_pred             HHHHHHHHH
Q 023354          264 EEIVNHILQ  272 (283)
Q Consensus       264 ~~l~~~l~~  272 (283)
                      ++|++++..
T Consensus       155 ~eLle~I~~  163 (501)
T 1zo1_I          155 DELLDAILL  163 (501)
T ss_dssp             TTHHHHTTT
T ss_pred             chhhhhhhh
Confidence            999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.06  E-value=2.2e-06  Score=73.09  Aligned_cols=58  Identities=21%  Similarity=0.106  Sum_probs=38.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh--cccC-----CC-cEEEEeecCCCC-CHHHHHHhccccCCc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK--FLRD-----KY-SLAAVTNDIFTK-EDGEFLMRNGALPEE  136 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g--~~~~-----~g-~i~i~~~d~~~~-~~~~~~~~ig~v~q~  136 (283)
                      .+|++++|+||||||||||++.|++  ++++     .+ .+.+.+.+.... ...++++.+++.++.
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~   88 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD   88 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH
Confidence            4799999999999999999999999  4544     33 444444332111 123345567776543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.05  E-value=7.6e-07  Score=86.97  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ...|+|+|..|+|||||++.|++.
T Consensus       177 ~~~I~iiG~~d~GKSTLi~~Ll~~  200 (592)
T 3mca_A          177 VVHLVVTGHVDSGKSTMLGRIMFE  200 (592)
T ss_dssp             EEEEEEECCSSSTHHHHHHHHHHH
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999764

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.05  E-value=3.3e-06  Score=75.37  Aligned_cols=47  Identities=19%  Similarity=0.100  Sum_probs=41.3

Q ss_pred             ccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        73 ~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      ..++|. ++++++|+|+||+||||++..|++++.+. +++.+++.|+..
T Consensus        91 ~~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           91 RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             CCCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             ceeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            456666 89999999999999999999999999876 899999988754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.03  E-value=2.1e-06  Score=76.91  Aligned_cols=24  Identities=17%  Similarity=0.237  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      +.+|+|+|++|+|||||++.+++.
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999998875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=2.4e-06  Score=71.39  Aligned_cols=39  Identities=23%  Similarity=0.213  Sum_probs=24.2

Q ss_pred             CCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           67 RRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        67 ~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ...+++++++|.. ++.+++|+|++||||||+.+.|++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3356788999985 48999999999999999999999865

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.01  E-value=2.7e-06  Score=85.00  Aligned_cols=79  Identities=18%  Similarity=0.065  Sum_probs=47.6

Q ss_pred             CCcEEEEeCCCCCCch------hhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHh-hcCCCCeEEEEeccCCCHHH
Q 023354          193 DYIIYIIDVSGGDKIP------RKGGPGITQADLLVINKTDLASAIGADLAVMERDALR-MRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~------~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~-~~~~~~i~~isa~~g~gi~~  265 (283)
                      +.+++|+|++.+....      .... .....-.+|+||+|++................ ...+.+++.+||++|.|+++
T Consensus       189 DlIL~VVDAs~~~~~~d~l~ll~~L~-~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvde  267 (772)
T 3zvr_A          189 CLILAVSPANSDLANSDALKIAKEVD-PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKD  267 (772)
T ss_dssp             EEEEEEEETTSCSSSCHHHHHHHHHC-TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEE
T ss_pred             cEEEEEEcCCCCcchhHHHHHHHHHH-hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchh
Confidence            4678889987642211      1111 11345589999999986533222222110000 01345788899999999999


Q ss_pred             HHHHHHH
Q 023354          266 IVNHILQ  272 (283)
Q Consensus       266 l~~~l~~  272 (283)
                      |++.+..
T Consensus       268 L~eaI~~  274 (772)
T 3zvr_A          268 ITAALAA  274 (772)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998876

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.01  E-value=6.9e-06  Score=71.43  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             cCCcEEEEeCCCC--CCchh---hcC---C---cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGG--DKIPR---KGG---P---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g--~~l~~---~~~---~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      ++..|+++|.+..  ..+..   ...   .   .....-.||.||+|+....  ..+.... +.....+.+++++||+++
T Consensus       163 ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~--~v~~~~~-~~~~~~~~~~~e~SAk~g  239 (255)
T 3c5h_A          163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER--YIRDAHT-FALSKKNLQVVETSARSN  239 (255)
T ss_dssp             CCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH--HHHHHHH-HHHTSSSCCEEECBTTTT
T ss_pred             CCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH--HHHHHHH-HHHhcCCCeEEEEECCCC
Confidence            4788999998764  32211   100   0   0123458999999985331  1121111 222224678999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAW  274 (283)
Q Consensus       261 ~gi~~l~~~l~~~~  274 (283)
                      .|+++++++|....
T Consensus       240 ~gv~elf~~l~~~l  253 (255)
T 3c5h_A          240 VNVDLAFSTLVQLI  253 (255)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999997754

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.00  E-value=5.2e-06  Score=85.96  Aligned_cols=103  Identities=11%  Similarity=0.081  Sum_probs=58.3

Q ss_pred             CCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCchhhc----CCcccccC-EEEEEcCCcccccCChHHHH---
Q 023354          171 ADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKIPRKG----GPGITQAD-LLVINKTDLASAIGADLAVM---  239 (283)
Q Consensus       171 ~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l~~~~----~~~i~~ad-~ivi~K~g~i~~~g~~~e~~---  239 (283)
                      ....++++.|+.+-......-   +|..|+|+|++.+...+...    ........ .|++||.|+.... ...+..   
T Consensus       359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~-e~le~i~eE  437 (1289)
T 3avx_A          359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE-ELLELVEME  437 (1289)
T ss_dssp             CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH-HHHHHHHHH
T ss_pred             EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch-hhHHHHHHH
Confidence            344566688876644333222   36899999998874222110    00112332 6789999987421 111212   


Q ss_pred             -hHHHHhhcC---CCCeEEEEeccC--------CCHHHHHHHHHHHH
Q 023354          240 -ERDALRMRD---GGPFIFAQVKHG--------LGVEEIVNHILQAW  274 (283)
Q Consensus       240 -~~~~~~~~~---~~~i~~isa~~g--------~gi~~l~~~l~~~~  274 (283)
                       .+.+....+   ..|++++|+++|        .|+.+|+++|....
T Consensus       438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence             222222222   378999999999        46778888777643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.99  E-value=4.1e-08  Score=92.43  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=34.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      ..+++|+|++|+||||++..|++.+... .++.++..|+..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            4689999999999999999999988755 688888888754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.98  E-value=1.9e-06  Score=80.89  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             CcccCCchHHHHH-HHHH--HhcCCcEEEEeCCCCCCchhhc----CCccccc-CEEEEEcCCcccccCChHHHHhHHHH
Q 023354          173 LLLCESGGDNLAA-NFSR--ELADYIIYIIDVSGGDKIPRKG----GPGITQA-DLLVINKTDLASAIGADLAVMERDAL  244 (283)
Q Consensus       173 ~~i~eSgGq~q~~-~ia~--al~~~~l~llDpt~g~~l~~~~----~~~i~~a-d~ivi~K~g~i~~~g~~~e~~~~~~~  244 (283)
                      ..++++.|+.+.. ...+  ..+|..|+|+|++.+...+...    ....... -.+++||+|+..+.....+.....+.
T Consensus       106 ~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~  185 (434)
T 1zun_B          106 FIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYL  185 (434)
T ss_dssp             EEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHH
Confidence            4455667754321 1122  2347899999998874221110    0011222 36789999987541111111222222


Q ss_pred             ---hhcC----CCCeEEEEeccCCCHHH
Q 023354          245 ---RMRD----GGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       245 ---~~~~----~~~i~~isa~~g~gi~~  265 (283)
                         +...    ..+++++||++|.|+++
T Consensus       186 ~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          186 KFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             HHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             HHHHHhCCCccCceEEEEeccCCCCccc
Confidence               1121    26789999999999986

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.98  E-value=4.2e-06  Score=68.52  Aligned_cols=26  Identities=27%  Similarity=0.253  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      +++|+||||||||||+++|++++.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~~   53 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGGL   53 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            89999999999999999999987653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.97  E-value=1.1e-05  Score=82.35  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=61.9

Q ss_pred             HHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC---CcEEEEe-CCCCCCchh------------hcCCc----
Q 023354          157 INLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD---YIIYIID-VSGGDKIPR------------KGGPG----  214 (283)
Q Consensus       157 ~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~---~~l~llD-pt~g~~l~~------------~~~~~----  214 (283)
                      ...+.|..+++.+. .++.+.+ ||||+||+.||++|+.   +.++|+| ||++++...            ..+.+    
T Consensus       443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV  522 (916)
T 3pih_A          443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV  522 (916)
T ss_dssp             HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred             HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            34556777776553 5777777 9999999999999984   3477777 999975321            11222    


Q ss_pred             ------ccccCEEEEE------cCCcccccCChHHHHh
Q 023354          215 ------ITQADLLVIN------KTDLASAIGADLAVME  240 (283)
Q Consensus       215 ------i~~ad~ivi~------K~g~i~~~g~~~e~~~  240 (283)
                            +..||+|+++      +.|++++.|++.+++.
T Consensus       523 tHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~  560 (916)
T 3pih_A          523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK  560 (916)
T ss_dssp             CCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred             eCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence                  2569999999      8999999998887654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.96  E-value=3.5e-06  Score=68.22  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +.+++|+|++|||||||+++|++.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999999764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.94  E-value=5.1e-06  Score=77.08  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|.+++|+|+||||||||+|+|+|
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999999999

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.92  E-value=9.2e-06  Score=78.25  Aligned_cols=26  Identities=15%  Similarity=0.397  Sum_probs=22.8

Q ss_pred             CCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          250 GPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       250 ~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .|+++.||.++.|++.|++.+....+
T Consensus       252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P  277 (529)
T 2h5e_A          252 TPVFFGTALGNFGVDHMLDGLVEWAP  277 (529)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eEEEeeecccCCCHHHHHHHHHHhCC
Confidence            47888999999999999999988765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.92  E-value=1.8e-06  Score=74.76  Aligned_cols=44  Identities=27%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             cccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        72 ~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      +.+.++..+ |  +.|+||||+|||||+++|++.+. .+.+.+.+.++
T Consensus        41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~   85 (254)
T 1ixz_A           41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF   85 (254)
T ss_dssp             HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred             HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHH
Confidence            445555544 5  99999999999999999999764 46676666554

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.92  E-value=4.8e-06  Score=80.57  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=23.2

Q ss_pred             CCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          250 GPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       250 ~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      .|+++.||+++.|+..|++.+...++
T Consensus       269 ~PV~~gSA~~~~Gv~~LLd~iv~~~P  294 (548)
T 3vqt_A          269 TPVFFGSAINNFGVREMLDMFVEFAP  294 (548)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred             ceeeecccccCcCHHHHHHHHHHhCC
Confidence            47888999999999999999998865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.91  E-value=1.9e-06  Score=75.77  Aligned_cols=44  Identities=27%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             cccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        72 ~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      +.+.++..+ |  ++|+||||+|||||+++|++.+. .+.+.+.+.++
T Consensus        65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~  109 (278)
T 1iy2_A           65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF  109 (278)
T ss_dssp             HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred             HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHH
Confidence            344555544 5  89999999999999999999864 46677766554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.89  E-value=4.7e-06  Score=80.63  Aligned_cols=37  Identities=30%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C-cEEEEe
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y-SLAAVT  115 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g-~i~i~~  115 (283)
                      .+|++++|+|+||||||||+++|++.+.+. | .+.+.+
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lD  405 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLD  405 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEES
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEEC
Confidence            479999999999999999999999999876 4 576443

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.88  E-value=6e-06  Score=81.31  Aligned_cols=27  Identities=15%  Similarity=0.349  Sum_probs=23.2

Q ss_pred             CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          249 GGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       249 ~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ..|++..|++++.|++.|++.+...++
T Consensus       212 ~~Pv~~gSa~~~~Gv~~LLd~i~~~~p  238 (638)
T 3j25_A          212 LFPLYHGSAKSNIGIDNLIEVITNKFY  238 (638)
T ss_dssp             CCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred             cccccccccccCCCchhHhhhhhcccc
Confidence            468889999999999999999987654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.88  E-value=3.4e-06  Score=69.08  Aligned_cols=28  Identities=29%  Similarity=0.329  Sum_probs=25.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      +|+.++|+||||+|||||++++++.+.+
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   64 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYE   64 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4899999999999999999999998764

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.87  E-value=5.5e-06  Score=77.80  Aligned_cols=96  Identities=13%  Similarity=0.048  Sum_probs=52.4

Q ss_pred             cCCCcccCCchHHHHHHHHHHh---cCCcEEEEeCCCCC-------Cchh-hcC---Cccccc-CEEEEEcCCcccccC-
Q 023354          170 KADLLLCESGGDNLAANFSREL---ADYIIYIIDVSGGD-------KIPR-KGG---PGITQA-DLLVINKTDLASAIG-  233 (283)
Q Consensus       170 ~~d~~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~-------~l~~-~~~---~~i~~a-d~ivi~K~g~i~~~g-  233 (283)
                      .....++++.|+.+.......-   +|..|+++|++.+.       .-+. +..   ...... -.+++||+|+....- 
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence            3455667788876544333222   36899999988751       1000 000   011222 368899999976310 


Q ss_pred             -ChHHHHhHHH----HhhcC---CCCeEEEEeccCCCHHH
Q 023354          234 -ADLAVMERDA----LRMRD---GGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       234 -~~~e~~~~~~----~~~~~---~~~i~~isa~~g~gi~~  265 (283)
                       ...+...+.+    ....+   ..+++++|+++|.|+.+
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  202 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccc
Confidence             1112222222    22221   36799999999999863

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.87  E-value=7.3e-06  Score=69.92  Aligned_cols=58  Identities=17%  Similarity=0.001  Sum_probs=38.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh-cccCCCcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK-FLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g-~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      .+|++++|+||||||||||+..++. ..+..+.+.++..+.......+....+|+.+|.
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~   79 (247)
T 2dr3_A           21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKP   79 (247)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHH
Confidence            5699999999999999999666654 444456777776654321122233456776654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.84  E-value=9.9e-06  Score=66.61  Aligned_cols=43  Identities=23%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             ccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe
Q 023354           73 LSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (283)
Q Consensus        73 ~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~  115 (283)
                      +......+|.+++|+|++||||||+.+.|+..+.+. +.+.+..
T Consensus         5 ~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   48 (186)
T 2yvu_A            5 TTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD   48 (186)
T ss_dssp             ---CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence            333334568999999999999999999999988755 5665543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.81  E-value=3.1e-06  Score=73.86  Aligned_cols=51  Identities=12%  Similarity=0.117  Sum_probs=32.4

Q ss_pred             ccccccC-CCCCCCCCCCCcccccccC-C---CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           54 HSHEPIY-SPGYFSRRAPPILSRNFNE-R---AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        54 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~---g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .....++ ++.| .....++++++|.. +   |++++|+|++||||||+.++|++.+
T Consensus        17 ~l~~~~~~~~~~-~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           17 LLETGSLLHSPF-DEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             ceEEcceeeEEe-cCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            3445555 6666 23345788888874 4   8999999999999999999999865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.78  E-value=1.2e-05  Score=65.71  Aligned_cols=31  Identities=35%  Similarity=0.407  Sum_probs=27.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g  109 (283)
                      .+|.+++|+|++||||||+.+.|++.+.+.|
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g   33 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHG   33 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence            3688999999999999999999999876554

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.75  E-value=0.00019  Score=67.36  Aligned_cols=141  Identities=22%  Similarity=0.262  Sum_probs=74.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCC--CChHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPH--AAIREDI  155 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~--~~~~~~~  155 (283)
                      +..+++++|++|+||||+...|+..+...  .++.++..|+......+..+..+       ....+..++.  ...... 
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~-------~~~~l~v~~~~~~~dp~~-  170 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLA-------EQVGVDFFPSDVGQKPVD-  170 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHH-------HHHTCEECCCCSSSCHHH-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhc-------ccCCeeEEeCCCCCCHHH-
Confidence            35689999999999999999999877643  48888888876533221111000       0000000110  011111 


Q ss_pred             HHHHHHHHHccccccCCCcccCCchH-----HHHHHHHH--Hhc--CCcEEEEeCCCCCCchhh---cCCcccccCEEEE
Q 023354          156 SINLGPLEELSNLFKADLLLCESGGD-----NLAANFSR--ELA--DYIIYIIDVSGGDKIPRK---GGPGITQADLLVI  223 (283)
Q Consensus       156 ~~~~~~l~~l~~~~~~d~~i~eSgGq-----~q~~~ia~--al~--~~~l~llDpt~g~~l~~~---~~~~i~~ad~ivi  223 (283)
                       .....+..+ ....+|.+++++.|.     .....++.  .+.  +.+++|+|++++.+....   +...+. -..||+
T Consensus       171 -i~~~~l~~~-~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~-i~gvVl  247 (433)
T 2xxa_A          171 -IVNAALKEA-KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALP-LTGVVL  247 (433)
T ss_dssp             -HHHHHHHHH-HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSC-CCCEEE
T ss_pred             -HHHHHHHHH-HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCC-CeEEEE
Confidence             112234333 124678888886552     12222221  122  477888998877543221   111111 146899


Q ss_pred             EcCCcccc
Q 023354          224 NKTDLASA  231 (283)
Q Consensus       224 ~K~g~i~~  231 (283)
                      ||.|.-..
T Consensus       248 nK~D~~~~  255 (433)
T 2xxa_A          248 TKVDGDAR  255 (433)
T ss_dssp             ECTTSSSC
T ss_pred             ecCCCCcc
Confidence            99987533

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.75  E-value=3.1e-05  Score=78.88  Aligned_cols=81  Identities=21%  Similarity=0.241  Sum_probs=60.0

Q ss_pred             HHHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC---CcEEEEe-CCCCCCchh------------hcCCc-------
Q 023354          160 GPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD---YIIYIID-VSGGDKIPR------------KGGPG-------  214 (283)
Q Consensus       160 ~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~---~~l~llD-pt~g~~l~~------------~~~~~-------  214 (283)
                      +.|..+++.+. +++.+.+ ||||+||+.||++|+.   +.++|+| ||++++...            ..+.+       
T Consensus       486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd  565 (972)
T 2r6f_A          486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD  565 (972)
T ss_dssp             HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred             HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence            45677777653 6777777 9999999999999984   4788888 999865321            11222       


Q ss_pred             ---ccccCEEEEE------cCCcccccCChHHHHh
Q 023354          215 ---ITQADLLVIN------KTDLASAIGADLAVME  240 (283)
Q Consensus       215 ---i~~ad~ivi~------K~g~i~~~g~~~e~~~  240 (283)
                         +..||+|+++      +.|.+++.|++.+.+.
T Consensus       566 l~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~  600 (972)
T 2r6f_A          566 EDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN  600 (972)
T ss_dssp             HHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred             HHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence               3679999999      7899988887766543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=97.71  E-value=9.1e-06  Score=76.87  Aligned_cols=94  Identities=15%  Similarity=0.092  Sum_probs=50.7

Q ss_pred             CCcccCCchHHHHHHHHHH---hcCCcEEEEeCCCCCCc-------hh-hc---CCccccc-CEEEEEcCCcccccCChH
Q 023354          172 DLLLCESGGDNLAANFSRE---LADYIIYIIDVSGGDKI-------PR-KG---GPGITQA-DLLVINKTDLASAIGADL  236 (283)
Q Consensus       172 d~~i~eSgGq~q~~~ia~a---l~~~~l~llDpt~g~~l-------~~-~~---~~~i~~a-d~ivi~K~g~i~~~g~~~  236 (283)
                      ...++++.|+.+.......   .+|..|+++|++.+...       +. +.   ....... -.+++||+|++.+.....
T Consensus        86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~  165 (458)
T 1f60_A           86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF  165 (458)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred             eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence            4455667776554433322   23688999998765200       10 00   0011222 367899999984311111


Q ss_pred             HHHhHHH----HhhcC---CCCeEEEEeccCCCHHH
Q 023354          237 AVMERDA----LRMRD---GGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       237 e~~~~~~----~~~~~---~~~i~~isa~~g~gi~~  265 (283)
                      +.....+    ....+   ..+++++||++|.|+.+
T Consensus       166 ~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          166 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            2222222    22222   37899999999999863

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=97.69  E-value=4.6e-05  Score=72.20  Aligned_cols=95  Identities=16%  Similarity=0.117  Sum_probs=47.6

Q ss_pred             CCcccCCchHHHHHHHH-HH--hcCCcEEEEeCCCCC---------Cchhhc--CCccccc-CEEEEEcCCcccccCCh-
Q 023354          172 DLLLCESGGDNLAANFS-RE--LADYIIYIIDVSGGD---------KIPRKG--GPGITQA-DLLVINKTDLASAIGAD-  235 (283)
Q Consensus       172 d~~i~eSgGq~q~~~ia-~a--l~~~~l~llDpt~g~---------~l~~~~--~~~i~~a-d~ivi~K~g~i~~~g~~-  235 (283)
                      ...++++.|+.+-.... +.  .+|..|+|+|++.+.         ......  ....... -.|++||.|+....-+. 
T Consensus       122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~  201 (467)
T 1r5b_A          122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEE  201 (467)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHH
T ss_pred             EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHH
Confidence            34566777765433222 22  246899999988762         111000  0011223 36889999986421111 


Q ss_pred             -HHH----HhHHHHhh-cC----CCCeEEEEeccCCCHHHH
Q 023354          236 -LAV----MERDALRM-RD----GGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       236 -~e~----~~~~~~~~-~~----~~~i~~isa~~g~gi~~l  266 (283)
                       .+.    +...+... .+    ..+++++|+++|.|+.++
T Consensus       202 ~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          202 RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence             111    22222222 11    467899999999998764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.68  E-value=6.2e-05  Score=76.07  Aligned_cols=80  Identities=24%  Similarity=0.239  Sum_probs=58.1

Q ss_pred             HHHHcccccc-CCCcccC-CchHHHHHHHHHHhcC-C--cEEEEe-CCCCCCchh------------hcCCc--------
Q 023354          161 PLEELSNLFK-ADLLLCE-SGGDNLAANFSRELAD-Y--IIYIID-VSGGDKIPR------------KGGPG--------  214 (283)
Q Consensus       161 ~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~~-~--~l~llD-pt~g~~l~~------------~~~~~--------  214 (283)
                      .|..+++.+. +++.+.+ ||||+||+.||++|+. +  .|+|+| ||++++...            ..+.+        
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            5666666543 6777777 9999999999999985 4  477777 999874321            11222        


Q ss_pred             --ccccCEEEEE------cCCcccccCChHHHHh
Q 023354          215 --ITQADLLVIN------KTDLASAIGADLAVME  240 (283)
Q Consensus       215 --i~~ad~ivi~------K~g~i~~~g~~~e~~~  240 (283)
                        +..||+|+++      +.|.+++.|++.+.+.
T Consensus       442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~  475 (842)
T 2vf7_A          442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH  475 (842)
T ss_dssp             HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred             HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence              3679999999      7899988887766543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.67  E-value=2.2e-05  Score=65.62  Aligned_cols=36  Identities=33%  Similarity=0.583  Sum_probs=28.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeec
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d  117 (283)
                      .++.+++|+|++|||||||.+.|++.+.   .+.++..|
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~---~~~~i~~D   54 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKHLP---NCSVISQD   54 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTST---TEEEEEGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcC---CcEEEeCC
Confidence            3578999999999999999999999753   34444443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.66  E-value=2.2e-05  Score=66.37  Aligned_cols=25  Identities=40%  Similarity=0.587  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.+++|+|++||||||+.+.|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.65  E-value=2.1e-05  Score=71.05  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHh-cccCC-CcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           81 AFTVGIGGPVGTGKTALMLALCK-FLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g-~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      ...+.|.||||+|||||+++|++ ++.++ |.+.+.+.++....  ..+..++++++..
T Consensus        36 ~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~   92 (354)
T 1sxj_E           36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPY   92 (354)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccc
Confidence            34499999999999999999999 66776 88887776543221  1245677776653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.65  E-value=2e-05  Score=73.23  Aligned_cols=57  Identities=21%  Similarity=0.109  Sum_probs=36.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHH--hcccC-----CCcE-EEEeecCCC-CCHHHHHHhccccCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALC--KFLRD-----KYSL-AAVTNDIFT-KEDGEFLMRNGALPE  135 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~--g~~~~-----~g~i-~i~~~d~~~-~~~~~~~~~ig~v~q  135 (283)
                      .+|+++.|+||+|||||||++.|+  ++.++     .+.+ .+.+.+... ....++++++|+.++
T Consensus       176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~  241 (400)
T 3lda_A          176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD  241 (400)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred             CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence            469999999999999999999654  55544     2334 444433211 112345567887665

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.64  E-value=2.2e-05  Score=75.79  Aligned_cols=42  Identities=24%  Similarity=0.337  Sum_probs=33.5

Q ss_pred             cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEE
Q 023354           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAA  113 (283)
Q Consensus        72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i  113 (283)
                      +...++..+|+.++|+||||+|||||+++|++.+.+. +.+.+
T Consensus        99 l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~  141 (543)
T 3m6a_A           99 VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL  141 (543)
T ss_dssp             HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred             HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence            3444555679999999999999999999999988654 55544

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.62  E-value=4.1e-05  Score=63.00  Aligned_cols=39  Identities=21%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      -++++|+|++|||||||++.|++.+.+. .++..+..+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~   45 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence            4689999999999999999999987655 46666666543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.60  E-value=6.5e-05  Score=64.34  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=26.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      .+|.+|+|.|++||||||+++.|+..+.+
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            36899999999999999999999998876

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.59  E-value=3.3e-05  Score=72.26  Aligned_cols=28  Identities=32%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      .+++++|+|||||||||||++|++++.+
T Consensus        25 ~~~~~~i~G~nG~GKstll~ai~~~~~~   52 (430)
T 1w1w_A           25 ESNFTSIIGPNGSGKSNMMDAISFVLGV   52 (430)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            4789999999999999999999998765

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.56  E-value=4.6e-05  Score=69.73  Aligned_cols=56  Identities=21%  Similarity=0.105  Sum_probs=41.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEE  136 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~  136 (283)
                      .+|.++.|.||||||||||+..++....+. +.+.++..+...  +..+.+++|+.+++
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~~ra~rlgv~~~~  115 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DPVYAKNLGVDLKS  115 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHHHHHHHTCCGGG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--chHHHHHcCCchhh
Confidence            468999999999999999999999987655 677666554322  23356677876553

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.56  E-value=3.7e-05  Score=64.14  Aligned_cols=23  Identities=30%  Similarity=0.684  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .+++|+|++||||||+.+.|+++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC
Confidence            37999999999999999999983

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.55  E-value=3.7e-05  Score=64.25  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+|.+++|+||+|||||||.+.|+..+.
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            4688999999999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.51  E-value=4.5e-05  Score=63.40  Aligned_cols=21  Identities=24%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 023354           83 TVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      +|+|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999999

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.50  E-value=6.5e-05  Score=60.02  Aligned_cols=24  Identities=29%  Similarity=0.160  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ..+.+|+||||||||||+.+|.-.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999999753

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.49  E-value=3.7e-05  Score=70.92  Aligned_cols=60  Identities=20%  Similarity=0.184  Sum_probs=39.4

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCch
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEER  137 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~  137 (283)
                      ++.+.++.. +|++++|+||||||||||+++|++.+  .|.+...  ....  + .....+|++||..
T Consensus       158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~~--~~~~--~-~~~~~lg~~~q~~  218 (377)
T 1svm_A          158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALNV--NLPL--D-RLNFELGVAIDQF  218 (377)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEECC--SSCT--T-THHHHHGGGTTCS
T ss_pred             HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEEE--eccc--h-hHHHHHHHhcchh
Confidence            445556654 48999999999999999999999964  3554331  1111  1 1122467777754

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.49  E-value=0.00016  Score=71.96  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=28.7

Q ss_pred             HHHhcCCcEEEEeCCCCCCchhhcC----CcccccCEEEEEcCCcccc
Q 023354          188 SRELADYIIYIIDVSGGDKIPRKGG----PGITQADLLVINKTDLASA  231 (283)
Q Consensus       188 a~al~~~~l~llDpt~g~~l~~~~~----~~i~~ad~ivi~K~g~i~~  231 (283)
                      |..++|..|+|+|+..|-..+.+..    ......-.++|||.|+..+
T Consensus       105 aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A          105 SLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred             HHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence            4456799999999998865433210    0113455889999998644

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.48  E-value=5.7e-05  Score=69.20  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=43.8

Q ss_pred             CchHHHHHHHHHHhc----------CCcEEEEe-CCCCCCchhh---------cCCcc-------cccCEEEEEcCCccc
Q 023354          178 SGGDNLAANFSRELA----------DYIIYIID-VSGGDKIPRK---------GGPGI-------TQADLLVINKTDLAS  230 (283)
Q Consensus       178 SgGq~q~~~ia~al~----------~~~l~llD-pt~g~~l~~~---------~~~~i-------~~ad~ivi~K~g~i~  230 (283)
                      |+||+|++.+|++|+          +|.|+|+| |+++.|....         ...++       ..|+++++++.|.+.
T Consensus       267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~~~~~i~~l~~G~i~  346 (359)
T 2o5v_A          267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAPGAALTLRAQAGRFT  346 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCTTCSEEEEEETTEEE
T ss_pred             CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccccCCEEEEEECCEEE
Confidence            999999999999998          46666666 9998764321         11110       168899999999998


Q ss_pred             ccCChHH
Q 023354          231 AIGADLA  237 (283)
Q Consensus       231 ~~g~~~e  237 (283)
                      ..|++.+
T Consensus       347 ~~g~~~~  353 (359)
T 2o5v_A          347 PVADEEM  353 (359)
T ss_dssp             ECCCTTT
T ss_pred             ecCCHHH
Confidence            8776644

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.46  E-value=7.4e-05  Score=62.10  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=27.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      ..+|+|+|++||||||+.+.|++.+   |...+...++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC---GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH---TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh---CCEEEeCCcC
Confidence            5689999999999999999999865   3444444443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.44  E-value=9.3e-05  Score=60.61  Aligned_cols=39  Identities=18%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      -.+++|+|++|||||||++.|+..++.. .++.++..+..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            4689999999999999999999988765 47887776654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.41  E-value=5.3e-05  Score=63.63  Aligned_cols=31  Identities=26%  Similarity=0.366  Sum_probs=27.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-C
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-Y  109 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g  109 (283)
                      .+|.+++|+|++||||||+.+.|.+.+.+. |
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g   54 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR   54 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence            468999999999999999999999988744 5

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.39  E-value=0.00053  Score=64.55  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=34.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC-CC-cEEEEeecCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIF  119 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~g-~i~i~~~d~~  119 (283)
                      .+|+++.|.|+||+|||||+..++....+ .| .+.++..+..
T Consensus       201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS  243 (454)
T ss_dssp             CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            46999999999999999999999997765 45 7888876653

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.39  E-value=9.2e-05  Score=68.37  Aligned_cols=55  Identities=16%  Similarity=0.001  Sum_probs=43.5

Q ss_pred             CCccccccCCCCCCCCCCCCcc-------------ccccc-CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           52 APHSHEPIYSPGYFSRRAPPIL-------------SRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+.+.|.++.|.|+.++...-.             +..+. .+|++++|+||+|+|||||++.|++.+.
T Consensus       131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            4678888999999987643321             44554 4699999999999999999999999764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.37  E-value=5.5e-05  Score=68.36  Aligned_cols=24  Identities=38%  Similarity=0.448  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.++|.||||+|||||+++|++.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            689999999999999999999987

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.36  E-value=8.3e-05  Score=60.69  Aligned_cols=26  Identities=31%  Similarity=0.284  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +|.+++|+|++||||||+.+.|+..+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            57789999999999999999998643

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.34  E-value=0.00017  Score=68.86  Aligned_cols=61  Identities=26%  Similarity=0.129  Sum_probs=39.9

Q ss_pred             cccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           72 ILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        72 ~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      +.+..+..+ |  +.|+||||+|||||+++|++... .+.+.+.+.++..........++..++|
T Consensus        56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq  117 (499)
T 2dhr_A           56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFE  117 (499)
T ss_dssp             TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred             hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence            344444433 5  89999999999999999999764 4667777776654322222333444444

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.31  E-value=0.00011  Score=58.81  Aligned_cols=24  Identities=25%  Similarity=0.181  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+|+|+|++||||||+.+.|+..+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.26  E-value=0.00012  Score=67.75  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ..+..++|+|+||+|||||+|+|++.
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            45788999999999999999999997

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.23  E-value=0.0002  Score=58.80  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ++..++|+|++||||||+.+.|+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999999999885

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.21  E-value=0.00036  Score=57.76  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcE
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSL  111 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i  111 (283)
                      ++.+|+|.|++||||||+.+.|+..+...|.+
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~   34 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV   34 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence            46789999999999999999999876644534

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.19  E-value=0.00021  Score=57.75  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +.+|.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999998653

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.19  E-value=0.0002  Score=61.21  Aligned_cols=28  Identities=21%  Similarity=0.490  Sum_probs=24.2

Q ss_pred             cCCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           78 NERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..++.+++|+|++||||||+.+.|++.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3468899999999999999999999843

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.17  E-value=0.0002  Score=60.02  Aligned_cols=25  Identities=32%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..+.+|+|||||||||++.+|.-.+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999997543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.15  E-value=0.00028  Score=58.30  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +|.+|+|.|++||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999876

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.13  E-value=0.00026  Score=57.69  Aligned_cols=27  Identities=26%  Similarity=0.201  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      +.+|+|.|++||||||+.+.|+..+..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            568999999999999999999886543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.12  E-value=0.00024  Score=56.69  Aligned_cols=20  Identities=30%  Similarity=0.370  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLAL  101 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L  101 (283)
                      .+|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.10  E-value=0.00025  Score=58.39  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +|+|.|++||||||+.+.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999998653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.09  E-value=0.00025  Score=57.95  Aligned_cols=26  Identities=35%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.+|.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998754

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.08  E-value=0.00031  Score=57.92  Aligned_cols=26  Identities=27%  Similarity=0.617  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .+..+|+|+|++||||||+.+.|+..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            34678999999999999999999985

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.07  E-value=0.00012  Score=60.96  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      +|+|.|++||||||+++.|+..+...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999987654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00038  Score=56.71  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +...++|+|++|||||||++.|++..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999999853

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.05  E-value=0.0005  Score=62.64  Aligned_cols=55  Identities=20%  Similarity=0.207  Sum_probs=39.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .+|.++.|.||||||||||+..++.... +.+.+.++..+.. .. ..+.+++|+.++
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~-~~-~~~a~~lG~~~~  114 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA-LD-PEYAKKLGVDTD  114 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CC-HHHHHHTTCCGG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-cC-HHHHHHcCCCHH
Confidence            3689999999999999999888887554 4467777776542 22 234556665443

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.04  E-value=0.00033  Score=57.36  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .++.+|+|+|++||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            357799999999999999999998754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.03  E-value=0.00027  Score=57.26  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.02  E-value=0.00039  Score=58.37  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      ++.+|+|.|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.02  E-value=0.00048  Score=67.24  Aligned_cols=48  Identities=21%  Similarity=0.160  Sum_probs=36.2

Q ss_pred             ccccccc-CCCcEEEEEcCCCCcHHHHHHHHHhcccCC--CcEEEEeecCC
Q 023354           72 ILSRNFN-ERAFTVGIGGPVGTGKTALMLALCKFLRDK--YSLAAVTNDIF  119 (283)
Q Consensus        72 ~~~~~~~-~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~--g~i~i~~~d~~  119 (283)
                      +..+.+. ..|+.+.|+||||+|||||+++|++++.+.  +.+.+.+....
T Consensus        50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~  100 (604)
T 3k1j_A           50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED  100 (604)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred             HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence            3444444 458899999999999999999999998765  45665555443

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.02  E-value=0.00067  Score=57.42  Aligned_cols=41  Identities=24%  Similarity=0.292  Sum_probs=31.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFT  120 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~  120 (283)
                      .+|.+|+|.|+.||||||+++.|...+...| .+ +...++..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~   45 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGG   45 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCS
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCC
Confidence            3588999999999999999999999887664 44 34444543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.01  E-value=0.00036  Score=56.23  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHh
Q 023354           82 FTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999987

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.00  E-value=0.00036  Score=57.98  Aligned_cols=28  Identities=18%  Similarity=0.280  Sum_probs=24.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+|.+|+|.|++||||||+.+.|+..+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999988654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.99  E-value=0.0003  Score=60.88  Aligned_cols=39  Identities=18%  Similarity=0.263  Sum_probs=29.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      .++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~   68 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSF   68 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGG
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHH
Confidence            3478999999999999999999998764 13344444433

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.97  E-value=0.00043  Score=58.27  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .++.+|+|+|++||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            357789999999999999999998854

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.96  E-value=0.0004  Score=57.68  Aligned_cols=24  Identities=38%  Similarity=0.567  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .|+|+||+|||||||++.|+...+
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            378999999999999999987654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.96  E-value=0.00041  Score=57.66  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ++.+|+|.|++||||||+.+.|+..+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999998664

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.96  E-value=0.00042  Score=56.42  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +..|.|+|++||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.95  E-value=0.00065  Score=55.40  Aligned_cols=27  Identities=30%  Similarity=0.450  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCCC
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDKY  109 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g  109 (283)
                      +|+|.|++||||||+.+.|+..+...|
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g   28 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKG   28 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            689999999999999999998764333

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.95  E-value=0.00041  Score=60.16  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+++|+||+|||||||.+.|++.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999998864

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.95  E-value=0.00041  Score=56.38  Aligned_cols=26  Identities=27%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++..|.|+|++||||||+.+.|+..+
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.93  E-value=0.0005  Score=63.26  Aligned_cols=36  Identities=14%  Similarity=-0.045  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~  115 (283)
                      .+..++|+|++|||||||++.|+..+.+. +.+.+.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            45678999999999999999999977665 6776654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.93  E-value=0.00048  Score=56.16  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.+|+|+|++||||||+.+.|+..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998754

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.92  E-value=0.00073  Score=57.22  Aligned_cols=45  Identities=20%  Similarity=0.068  Sum_probs=33.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCc-EEEEeecCCCCCHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYS-LAAVTNDIFTKEDG  124 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~-i~i~~~d~~~~~~~  124 (283)
                      +|.+|.|-|+.||||||+++.|...+...|. ..+...++......
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g   47 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLA   47 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHH
Confidence            4789999999999999999999998875542 22445555544333

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.92  E-value=0.00041  Score=56.46  Aligned_cols=26  Identities=19%  Similarity=0.334  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      +|.|.|++||||||+.+.|+..+...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~   28 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999876533

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=96.91  E-value=0.00032  Score=71.08  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      -..|+|+|..|+|||||++.|++.
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999874

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.85  E-value=0.00059  Score=62.52  Aligned_cols=24  Identities=42%  Similarity=0.544  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      +..++|+|++|+|||||+|+|++.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999983

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.85  E-value=0.00068  Score=56.10  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.+|+|+|++||||||+.+.|+..+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46689999999999999999998754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.84  E-value=0.00056  Score=56.13  Aligned_cols=25  Identities=24%  Similarity=0.146  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.+|+|+|++||||||+.+.|+..+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998854

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.82  E-value=0.00046  Score=55.94  Aligned_cols=26  Identities=38%  Similarity=0.497  Sum_probs=18.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.+|.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.82  E-value=0.00062  Score=58.57  Aligned_cols=26  Identities=35%  Similarity=0.675  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +..+++|.||+||||||+.+.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.80  E-value=0.00065  Score=57.48  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.+|+|+|++||||||+.+.|+..+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.79  E-value=0.00083  Score=55.91  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +...++|+|++|+|||||++.|++..
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            35689999999999999999999854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.78  E-value=0.00064  Score=56.81  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +|+|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.77  E-value=0.00064  Score=60.13  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++..+.|+||+||||||+.+.|+..+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.76  E-value=0.00072  Score=56.55  Aligned_cols=23  Identities=17%  Similarity=0.140  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +|+|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.00056  Score=62.96  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             CCC-cEEEEEcCCCCcHHHHHHHHHhc
Q 023354           79 ERA-FTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        79 ~~g-~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      +.| ..|+|+|++++|||||+|+|++.
T Consensus        69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~   95 (376)
T 4a9a_A           69 RTGVASVGFVGFPSVGKSTLLSKLTGT   95 (376)
T ss_dssp             BCSSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred             ecCCCeEEEECCCCCCHHHHHHHHhCC
Confidence            344 47999999999999999999985

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.75  E-value=0.00068  Score=57.08  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.+|.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998755

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.75  E-value=0.00088  Score=55.39  Aligned_cols=26  Identities=23%  Similarity=0.157  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +..+|+|+|++||||||+.+.|+..+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999998754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.73  E-value=0.00073  Score=55.81  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998854

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.73  E-value=0.0012  Score=56.78  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFT  120 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~  120 (283)
                      +|.+|+|.|++||||||+++.|...+...| .+.+...++..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~   67 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG   67 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence            588999999999999999999999876554 42334444543

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.73  E-value=0.00065  Score=55.27  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+|+|+|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            469999999999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.71  E-value=0.00079  Score=57.62  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      .+|.+|+|.|+.||||||+++.|+..+..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999987753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.69  E-value=0.0009  Score=56.87  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +..+|.|+||+||||+|..+.|+..+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999998865

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.66  E-value=0.00075  Score=61.94  Aligned_cols=22  Identities=41%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023354           83 TVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .++|+|++|||||||+++|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999986

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.65  E-value=0.00085  Score=54.53  Aligned_cols=25  Identities=20%  Similarity=0.185  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..+|+|+|++||||||+.+.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998754

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=96.65  E-value=0.0011  Score=52.97  Aligned_cols=36  Identities=25%  Similarity=0.233  Sum_probs=27.7

Q ss_pred             CCcccC-CchHHHHHHHH------HHhcC-CcEEEEe-CCCCCCc
Q 023354          172 DLLLCE-SGGDNLAANFS------RELAD-YIIYIID-VSGGDKI  207 (283)
Q Consensus       172 d~~i~e-SgGq~q~~~ia------~al~~-~~l~llD-pt~g~~l  207 (283)
                      +..+.+ ||||+||+++|      ++++. |.++++| |+++.|.
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~   96 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDE   96 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCH
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCH
Confidence            344444 99999999876      67764 8888888 9999764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.65  E-value=0.00092  Score=58.02  Aligned_cols=27  Identities=26%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ++.+|.|.|++||||||+.+.|+..+.
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999998654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.65  E-value=0.00085  Score=53.79  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+|+|+|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.64  E-value=0.001  Score=53.17  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +|+|.|++||||||+.+.|...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998854

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.64  E-value=0.001  Score=57.12  Aligned_cols=27  Identities=26%  Similarity=0.107  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .++.+|+|+|++||||||+.+.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            357789999999999999999998754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.63  E-value=0.0011  Score=53.23  Aligned_cols=25  Identities=28%  Similarity=0.287  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      -.+++|+|++||||||+.+.|+..+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.63  E-value=0.0009  Score=56.28  Aligned_cols=26  Identities=19%  Similarity=0.162  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.+|+|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998855

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.62  E-value=0.0042  Score=56.28  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~  118 (283)
                      .+|+.+.|.|++|+|||||+..++...... +.+.++..+.
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm   84 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM   84 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            469999999999999999999988765434 6777777654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.60  E-value=0.00071  Score=60.89  Aligned_cols=38  Identities=32%  Similarity=0.404  Sum_probs=28.6

Q ss_pred             CCcE--EEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354           80 RAFT--VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (283)
Q Consensus        80 ~g~~--v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d  117 (283)
                      .|.+  +.|.||+|+||||+++++++.+.+. +.+.+...+
T Consensus        43 ~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~   83 (340)
T 1sxj_C           43 EGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN   83 (340)
T ss_dssp             TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence            3544  8999999999999999999987654 444444443

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.58  E-value=0.0011  Score=60.50  Aligned_cols=27  Identities=26%  Similarity=0.597  Sum_probs=23.3

Q ss_pred             CCcE--EEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFT--VGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~--v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +|++  ++|+|++||||||+.++|++.+.
T Consensus        21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           21 DNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             TCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4555  99999999999999999998653

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.58  E-value=0.00055  Score=65.48  Aligned_cols=30  Identities=20%  Similarity=0.149  Sum_probs=26.5

Q ss_pred             CchHHHHHHHHHHhc-CC--cEEEEe-CCCCCCc
Q 023354          178 SGGDNLAANFSRELA-DY--IIYIID-VSGGDKI  207 (283)
Q Consensus       178 SgGq~q~~~ia~al~-~~--~l~llD-pt~g~~l  207 (283)
                      ||||+||++||++++ +|  .++|+| |++|.+.
T Consensus       399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~  432 (517)
T 4ad8_A          399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGG  432 (517)
T ss_dssp             CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCT
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCH
Confidence            999999999999987 57  888888 9999763

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.56  E-value=0.001  Score=57.17  Aligned_cols=24  Identities=42%  Similarity=0.461  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      -+.|.||+|+|||||+++|++.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHcC
Confidence            488999999999999999999764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.54  E-value=0.0014  Score=55.68  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=23.9

Q ss_pred             ccCCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           77 FNERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        77 ~~~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +..++..|.|+|++||||||+.+.|+..+
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            33456789999999999999999998765

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.53  E-value=0.0022  Score=52.92  Aligned_cols=27  Identities=30%  Similarity=0.413  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      ..+.|.||+|+|||||+++++..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            679999999999999999999876544

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.52  E-value=0.0012  Score=60.42  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALC  102 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~  102 (283)
                      .+.+|+|+|||||||+|.+|+
T Consensus        26 gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999986

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.51  E-value=0.0043  Score=56.01  Aligned_cols=26  Identities=35%  Similarity=0.492  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      .+.|.||+|+|||||++.+++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            89999999999999999999987654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.51  E-value=0.0013  Score=55.65  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +|+|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.49  E-value=0.0013  Score=55.27  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.|+||+||||+|..+.|+..+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.49  E-value=0.0014  Score=56.42  Aligned_cols=25  Identities=24%  Similarity=0.643  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..+|+|.|++||||||+.+.|...+
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.48  E-value=0.0016  Score=57.51  Aligned_cols=26  Identities=35%  Similarity=0.282  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++..++|+|.+|+|||||+|.|+|..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            35689999999999999999999864

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.47  E-value=0.0011  Score=60.64  Aligned_cols=30  Identities=33%  Similarity=0.362  Sum_probs=24.7

Q ss_pred             ccccccCC-CcEEEEEcCCCCcHHHHHHHHHh
Q 023354           73 LSRNFNER-AFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        73 ~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      ...++.-. | +++|+||||||||||+++|.+
T Consensus        18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence            34445433 5 999999999999999999997

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.46  E-value=0.0013  Score=55.04  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .|+|+|++||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.46  E-value=0.0021  Score=53.90  Aligned_cols=29  Identities=28%  Similarity=0.431  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      ++..+.|.||+|+|||||++.++..+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~   79 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANEL   79 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            57889999999999999999999876543

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.41  E-value=0.0026  Score=60.84  Aligned_cols=41  Identities=12%  Similarity=0.150  Sum_probs=33.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHh--cccCC-CcEEEEeecCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCK--FLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g--~~~~~-g~i~i~~~d~~~  120 (283)
                      +++.+.|.|.+||||||+|+.|+.  +++.+ +.+.+...|+..
T Consensus       166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            478999999999999999999886  44555 788888887764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.41  E-value=0.0018  Score=53.91  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ...+|+|+|+.||||||+.+.|...+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc
Confidence            35689999999999999999998753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.39  E-value=0.0016  Score=56.80  Aligned_cols=25  Identities=28%  Similarity=0.147  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ..++|+|.+|+|||||+|.|+|...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            5899999999999999999998654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.38  E-value=0.0028  Score=55.67  Aligned_cols=35  Identities=29%  Similarity=0.317  Sum_probs=28.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEe
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVT  115 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~  115 (283)
                      ...+.|.||+|+|||||.++|++.+... +.+...+
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~   82 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID   82 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence            3579999999999999999999988665 5444443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.37  E-value=0.0017  Score=56.24  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ...|+|+|..|+|||||++.|++.
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999985

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.36  E-value=0.0017  Score=56.47  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ...|+|+|..|+|||||++.|++..
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC
Confidence            4589999999999999999999853

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.36  E-value=0.00097  Score=59.09  Aligned_cols=38  Identities=13%  Similarity=0.353  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d  117 (283)
                      +..+|+|.|+.||||||+.+.|...+... ..+.++..|
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D   42 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   42 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence            46789999999999999999998855322 235555444

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.33  E-value=0.0017  Score=55.47  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC-CC-cEEEEeecCCCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD-KY-SLAAVTNDIFTK  121 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~-~g-~i~i~~~d~~~~  121 (283)
                      .+|.+|+|.|+.||||||+++.|...+.. .| .+.+...++...
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t   63 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGT   63 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCC
Confidence            36889999999999999999999998765 44 454434555543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.33  E-value=0.0044  Score=51.99  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDG  124 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~  124 (283)
                      |.+|+|=|+-||||||+++.|...+.....+. ...+++.....
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~-~~~eP~~t~~g   44 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI-MTREPGGVPTG   44 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE-EEESSTTCHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEE-EeeCCCCChHH
Confidence            45789999999999999999999775433443 34455544333

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.28  E-value=0.0053  Score=51.99  Aligned_cols=29  Identities=34%  Similarity=0.225  Sum_probs=26.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      .+|.+|.|.|+.||||||+++.|...+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            36889999999999999999999998765

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.28  E-value=0.0019  Score=59.86  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023354           83 TVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .++|+|++|+|||||+|+|++.
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~   23 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLV   23 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999985

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.28  E-value=0.0025  Score=56.07  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      +..+|+|.|++||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999985

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.27  E-value=0.0037  Score=51.41  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEEe
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVT  115 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~~  115 (283)
                      +|.++.+.||+||||||++..++..+. ...++.+..
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~   38 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK   38 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            477899999999999999855554333 334555544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.24  E-value=0.0027  Score=56.18  Aligned_cols=27  Identities=33%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+..+.|.||+|+|||||+++|++.+.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            467899999999999999999999753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.18  E-value=0.0032  Score=50.39  Aligned_cols=27  Identities=26%  Similarity=0.260  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ....+.|.||+|+|||||++.++..+.
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            356789999999999999999988653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.15  E-value=0.0027  Score=53.04  Aligned_cols=25  Identities=24%  Similarity=0.529  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.+++|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998854

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.12  E-value=0.003  Score=53.81  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ++.+|+|.|+.||||||+++.|+..+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            356899999999999999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.12  E-value=0.003  Score=55.53  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .+|.|+|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999873

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.10  E-value=0.0037  Score=54.70  Aligned_cols=26  Identities=35%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+..+.|.||+|+|||||++++++.+
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            46689999999999999999999865

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.09  E-value=0.0026  Score=57.19  Aligned_cols=29  Identities=34%  Similarity=0.360  Sum_probs=25.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      ..+..+.|.||+|+|||||++.+++.+.+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~   71 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK   71 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34778999999999999999999997653

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.07  E-value=0.0051  Score=51.19  Aligned_cols=43  Identities=21%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHH
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGE  125 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~  125 (283)
                      +|+|=|.-||||||.++.|...+...|.-.+...+++.....+
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~   44 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGE   44 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHH
Confidence            5788899999999999999998876654344555555444333

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.02  E-value=0.0023  Score=55.33  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .++.+|+|.|+.||||||+.+.|+..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4678999999999999999999988763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.00  E-value=0.0042  Score=56.20  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.+++|+||.|||||||...|+..+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            46789999999999999999999865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.98  E-value=0.0044  Score=57.58  Aligned_cols=27  Identities=19%  Similarity=0.078  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+..+|.|+|++||||||+.+.|+..+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            347899999999999999999998743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.96  E-value=0.0043  Score=55.21  Aligned_cols=27  Identities=37%  Similarity=0.335  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      +..+.|.||+|+|||||++.++..+..
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~   63 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKK   63 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence            467899999999999999999997654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.95  E-value=0.0029  Score=61.49  Aligned_cols=27  Identities=33%  Similarity=0.267  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+..+|+|+|++|+|||||+|.|+|..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            345689999999999999999999953

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.95  E-value=0.0071  Score=54.67  Aligned_cols=40  Identities=23%  Similarity=0.167  Sum_probs=30.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc-cC------CCcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL-RD------KYSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~-~~------~g~i~i~~~d~  118 (283)
                      .+|.++.|.||+|||||||+..++... .+      .+.+.++..+.
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            468999999999999999999998852 22      35666665543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.94  E-value=0.0039  Score=52.31  Aligned_cols=34  Identities=24%  Similarity=0.243  Sum_probs=27.9

Q ss_pred             CcccccccCCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .+...-+...|..+.|+||+|||||||...|+..
T Consensus        24 ~lHa~~v~~~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           24 SMHGVLVDIYGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CEESEEEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeEEEEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3455555667889999999999999999999774

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.91  E-value=0.0042  Score=56.32  Aligned_cols=25  Identities=36%  Similarity=0.595  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+|+|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999988653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.90  E-value=0.0042  Score=49.68  Aligned_cols=27  Identities=26%  Similarity=0.203  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ....+.|.||+|+|||||++.++..+.
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            356789999999999999999988654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.90  E-value=0.0035  Score=60.48  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      -.+|+|+|+.|||||||+|.|+|.
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~   88 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQ   88 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999999995

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.89  E-value=0.0063  Score=54.49  Aligned_cols=40  Identities=20%  Similarity=0.130  Sum_probs=30.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc-cC------CCcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL-RD------KYSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~-~~------~g~i~i~~~d~  118 (283)
                      .+|.++.|.|++|+|||||+..++... .+      .+.+.++..+-
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            468999999999999999999998753 33      45666665543

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.88  E-value=0.0049  Score=52.31  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      +|+.++|.||+||||||++..++-
T Consensus        75 ~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           75 QNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCCcHHhHHHHHh
Confidence            588999999999999998887754

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=95.87  E-value=0.0049  Score=58.83  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023354           83 TVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      +.+|+|+|||||||||.+|..+
T Consensus        62 ~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           62 FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             EEEEEESHHHHHHHHTHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHH
Confidence            9999999999999999999665

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.85  E-value=0.0054  Score=55.01  Aligned_cols=25  Identities=40%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..+++|+||+|||||||...|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4689999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	2e-26
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	2e-19
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	9e-08
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	0.001
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.001
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score =  103 bits (257), Expect = 2e-26
 Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 11/215 (5%)

Query: 75  RNFNERAFTVGIGGPVGTGKTALMLALCKFLRD-KYSLAAVTNDIFTKEDGEFLMRNGAL 133
                RA  VGI G  G GK+  + AL   L    + +A +  D  +   G  ++ +   
Sbjct: 45  LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 104

Query: 134 PEERIRAVETGGCPHAAIREDISINLGPLE--ELSNLFKADLLLCESGGDNLAANFSREL 191
                        P  +      +     E   L      D++L E+ G   +     +L
Sbjct: 105 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADL 164

Query: 192 ADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMR---- 247
            D+ + ++    GD++          AD++ +NK D         A        +     
Sbjct: 165 TDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTP 224

Query: 248 ----DGGPFIFAQVKHGLGVEEIVNHILQAWEAST 278
                  P +     HG G++ + + I       T
Sbjct: 225 PSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLT 259

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 84.5 bits (208), Expect = 2e-19
 Identities = 41/209 (19%), Positives = 72/209 (34%), Gaps = 10/209 (4%)

Query: 80  RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFTKEDGEFLMRNGALPEE-- 136
               +G+ G  G GK+  + A    L  +   +A +  D  +   G  ++ +     +  
Sbjct: 53  NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLA 112

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYII 196
           R  A      P +      S     L  L      D+++ E+ G   +      + D  I
Sbjct: 113 RAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFI 172

Query: 197 YIIDVSGGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVME-RDALRMRDGG----- 250
            +    GGD +       +  ADL+VINK D  +     +A      AL +         
Sbjct: 173 SLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQ 232

Query: 251 -PFIFAQVKHGLGVEEIVNHILQAWEAST 278
              +        G++EI + I+    A T
Sbjct: 233 PRVLTCSALEKRGIDEIWHAIIDFKTALT 261

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 49.6 bits (117), Expect = 9e-08
 Identities = 30/185 (16%), Positives = 49/185 (26%), Gaps = 22/185 (11%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-------DGEFLMRNGALPEE 136
           V   G  G+GKT L     ++L D Y +A V  D   KE       D    +    +  E
Sbjct: 3   VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62

Query: 137 RIRAVETGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDN------LAANFSRE 190
                      +  + E  +  L  +  L       L+      +               
Sbjct: 63  GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL 122

Query: 191 LADYIIYIIDVSGGDKIPRKGGPGITQ---------ADLLVINKTDLASAIGADLAVMER 241
               ++YI D     K                      +  +NK DL S    +      
Sbjct: 123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYF 182

Query: 242 DALRM 246
           + +  
Sbjct: 183 EDIDY 187

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 64  YFSRRAPPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKY----SLAAVTNDIF 119
           +  +  P       N+    +   GP G+GK+   + +   L +KY    S+   + D F
Sbjct: 11  FLDKYIPEWFETG-NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69

Query: 120 --TKEDGEFLMRN 130
             T ED   L   
Sbjct: 70  YLTHEDQLKLNEQ 82

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 26/190 (13%), Positives = 54/190 (28%), Gaps = 12/190 (6%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVE 142
           V + GP G GKT L+    + L+     +     +   +           L   R     
Sbjct: 4   VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63

Query: 143 TGGCPHAAIREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVS 202
            G  P    RE        + +L++  +  L +  +   +        + D I  +   S
Sbjct: 64  VGLEPPPGKRECRVGQ--YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121

Query: 203 GGDKIPRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIF--AQVKHG 260
                  +         +L          +         + +R R          + ++ 
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLALV------EEIRNRKDVKVFNVTKENRNH 175

Query: 261 LGVEEIVNHI 270
           L + +IV  +
Sbjct: 176 L-LPDIVTCV 184

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 3/95 (3%)

Query: 84  VGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA-- 140
             + G   +GKT LM         + + +  V +     E       +    E       
Sbjct: 4   WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVAT 63

Query: 141 VETGGCPHAAIREDISINLGPLEELSNLFKADLLL 175
              G              L  +  L    + DL+L
Sbjct: 64  AVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVL 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.97
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.97
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.97
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.97
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.97
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.96
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.96
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.96
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.96
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.96
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.96
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.96
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.95
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.95
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.95
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.93
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.91
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.89
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.77
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.73
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.41
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.35
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.29
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.23
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.2
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.16
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.14
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.13
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.07
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.07
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.06
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.96
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.96
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.94
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.92
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.91
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.85
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.84
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1okkd2	207	GTPase domain of the signal recognition particle r	98.8
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.79
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.78
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.76
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.76
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.74
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.74
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.73
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.72
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.7
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.7
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.68
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.66
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.66
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.65
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.65
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.63
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.61
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.6
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.6
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.6
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.59
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.58
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.58
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.58
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.56
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.55
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.53
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.53
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.51
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.44
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.41
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.37
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.33
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.33
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.24
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.23
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.2
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.2
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.14
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.13
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.02
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.88
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.76
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.59
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.56
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.56
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.53
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.52
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.5
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.5
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.47
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.46
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.43
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.43
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.43
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.42
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.41
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.4
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.4
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.35
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.34
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.3
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.3
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.29
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.29
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.22
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.22
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.2
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.19
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.18
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.17
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.15
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.14
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.11
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.1
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.09
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.08
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.08
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.07
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.06
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.06
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.06
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.05
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.05
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.02
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.02
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.01
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.0
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.98
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.97
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.97
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.97
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.96
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.95
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.93
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.9
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.9
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.9
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.82
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.75
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.75
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.7
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.69
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.69
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.69
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.64
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.59
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.58
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.56
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.53
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.47
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.42
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.36
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.35
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.33
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.32
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.3
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.3
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.29
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.28
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.26
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.25
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.11
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.06
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.05
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.98
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.94
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.92
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.82
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.76
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.76
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.72
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.71
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.7
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.66
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.62
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.51
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.5
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.5
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.48
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.43
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.41
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.4
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.38
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.33
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.28
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.19
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.18
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.97
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.97
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.91
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.86
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.82
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.77
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.69
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.59
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.4
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.35
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.22
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.2
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.1
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.96
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.79
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.75
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.75
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.74
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.7
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.57
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.37
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.37
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.11
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.09
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	92.93
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.86
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.82
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.49
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.25
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	92.24
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.18
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.12
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.07
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.02
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.82
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.54
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	91.53
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.49
d1tuea_	205	Replication protein E1 helicase domain {Human papi	90.74
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.56
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	90.46
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.78
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.64
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.53
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.44
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.99
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.9
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.74
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.46
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.01
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.4
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.31
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.69
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.51
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.45
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.03
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.25
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	83.98
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.36
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	82.01
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	81.85
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.13

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-31  Score=231.77  Aligned_cols=189  Identities=18%  Similarity=0.161  Sum_probs=142.0

Q ss_pred             CCCccccccCCCCCCCCCC-CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354           51 LAPHSHEPIYSPGYFSRRA-PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~  127 (283)
                      ..|.+.+.+++|.|++... .++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...++
T Consensus         8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r   87 (251)
T d1jj7a_           8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH   87 (251)
T ss_dssp             CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred             ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence            4578999999999987654 58999999955 9999999999999999999999999998 9999999999988888899


Q ss_pred             HhccccCCchH-------HHHHhCCCCCCChHHHHHH-H----HHHHHHccccccCCCccc----C-CchHHHHHHHHHH
Q 023354          128 MRNGALPEERI-------RAVETGGCPHAAIREDISI-N----LGPLEELSNLFKADLLLC----E-SGGDNLAANFSRE  190 (283)
Q Consensus       128 ~~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~-~----~~~l~~l~~~~~~d~~i~----e-SgGq~q~~~ia~a  190 (283)
                      +.++||+|++.       +.+.++............. .    .+.+..+  ...++..+.    + ||||+||++|||+
T Consensus        88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l--~~g~~~~i~~~~~~LSGGqkQRvaiARa  165 (251)
T d1jj7a_          88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGL--PQGYDTEVDEAGSQLSGGQRQAVALARA  165 (251)
T ss_dssp             HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTS--TTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred             HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhc--cccchhhHhccCccCChhHceEEEEeec
Confidence            99999999874       2233332332222221111 1    1122222  123333333    2 9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          191 LA-DYIIYIID-VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      ++ +|.|+++| ||++.|..             ++.+.+          ++.||+|++++.|++++.|++.+++++
T Consensus       166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~  241 (251)
T d1jj7a_         166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK  241 (251)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             cccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            99 48888877 99986532             122222          377999999999999999999988764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=2.2e-31  Score=232.62  Aligned_cols=188  Identities=17%  Similarity=0.183  Sum_probs=144.1

Q ss_pred             CCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH
Q 023354           51 LAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM  128 (283)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~  128 (283)
                      ..|.+.+.+++|.|+....+++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++
T Consensus        10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~   89 (253)
T d3b60a1          10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN   89 (253)
T ss_dssp             CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred             CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence            457899999999999888889999999965 9999999999999999999999999998 99999999999888889999


Q ss_pred             hccccCCchH-------HHHHhCCCCCCChHHHHHHHHH------HHHHccccccCCCcccC-----CchHHHHHHHHHH
Q 023354          129 RNGALPEERI-------RAVETGGCPHAAIREDISINLG------PLEELSNLFKADLLLCE-----SGGDNLAANFSRE  190 (283)
Q Consensus       129 ~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~------~l~~l~~~~~~d~~i~e-----SgGq~q~~~ia~a  190 (283)
                      .++|++|++.       ..+.++ .+.....+.+..+.+      .++.+  ..+++..+.+     ||||+||++|||+
T Consensus        90 ~i~~v~Q~~~l~~~ti~~n~~~~-~~~~~~~~~i~~a~~~~~l~~~i~~l--~~gl~t~~~~~~~~LSGGqkQRvaiARa  166 (253)
T d3b60a1          90 QVALVSQNVHLFNDTVANNIAYA-RTEEYSREQIEEAARMAYAMDFINKM--DNGLDTIIGENGVLLSGGQRQRIAIARA  166 (253)
T ss_dssp             TEEEECSSCCCCSSBHHHHHHTT-TTSCCCHHHHHHHHHTTTCHHHHHHS--TTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred             eEEEEeeccccCCcchhhhhhhc-CcccCCHHHHHHHHHHHhHHHHHHhc--cccchhhhcCCCCCcCHHHHHHHHHHHH
Confidence            9999999874       222233 222222232222111      22221  2234444443     9999999999999


Q ss_pred             hc-CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHhH
Q 023354          191 LA-DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       191 l~-~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |+ +|.|+|+| ||++.|...+           .+.          .+..||+|++++.|++++.|++.+++.+
T Consensus       167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~  240 (253)
T d3b60a1         167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ  240 (253)
T ss_dssp             HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            98 68888888 9998763211           111          1378999999999999999999988763

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=4.7e-31  Score=227.71  Aligned_cols=179  Identities=12%  Similarity=0.007  Sum_probs=137.4

Q ss_pred             ccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCC
Q 023354           58 PIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPE  135 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q  135 (283)
                      .+.+..|.  ...++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.  ++.+|||||
T Consensus        10 ~nlsk~yg--~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q   85 (239)
T d1v43a3          10 ENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQ   85 (239)
T ss_dssp             EEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC
T ss_pred             EEEEEEEC--CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEEEee
Confidence            34444442  3458999999855 9999999999999999999999999998 9999999999876654  467999999


Q ss_pred             chH--------HHHHhCCCCCCChH-HHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCC
Q 023354          136 ERI--------RAVETGGCPHAAIR-EDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSG  203 (283)
Q Consensus       136 ~~~--------~~i~~~g~~~~~~~-~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~  203 (283)
                      ++.        +.+.++.......+ +....+.+.|+.+++....++.+.+ ||||+||++|||+|+ +|.|+++| ||+
T Consensus        86 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts  165 (239)
T d1v43a3          86 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS  165 (239)
T ss_dssp             ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred             chhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcc
Confidence            874        22333333222222 3334677889999998888888888 999999999999999 58888888 999


Q ss_pred             CCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          204 GDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       204 g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +.|..             ++.+.+           .++||+|++++.|++++.|++.+++.
T Consensus       166 ~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  226 (239)
T d1v43a3         166 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  226 (239)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            97632             222332           27899999999999999999988875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.1e-32  Score=232.09  Aligned_cols=170  Identities=16%  Similarity=0.090  Sum_probs=113.3

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHH------
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRA------  140 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~------  140 (283)
                      ..++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.  ++.+|||||++..+      
T Consensus        13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~~tv~   90 (232)
T d2awna2          13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVA   90 (232)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEEECSSCCC-------
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeeeeccccccccchhHH
Confidence            458899999855 9999999999999999999999999998 9999999998766553  46799999987422      


Q ss_pred             --HHhCCCCCCC-hHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch------
Q 023354          141 --VETGGCPHAA-IREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP------  208 (283)
Q Consensus       141 --i~~~g~~~~~-~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~------  208 (283)
                        +.++...... ..+....+.+.|+.+.+....++.+.+ ||||+||++|||+|+ +|.++++| ||++.|..      
T Consensus        91 eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~  170 (232)
T d2awna2          91 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR  170 (232)
T ss_dssp             --------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence              2222211111 122234567788898888888888888 999999999999998 58888888 99997642      


Q ss_pred             -------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 -------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 -------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                             ++.+.+           ..+||+|++++.|++++.|++.+++.
T Consensus       171 ~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             HHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence                   222332           26799999999999999999988875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=7.4e-32  Score=233.03  Aligned_cols=183  Identities=15%  Similarity=0.050  Sum_probs=141.6

Q ss_pred             ccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCH---HHHHHhccc
Q 023354           58 PIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKED---GEFLMRNGA  132 (283)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~---~~~~~~ig~  132 (283)
                      .+++..|......++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+.   ..+++++||
T Consensus         7 ~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~   86 (242)
T d1oxxk2           7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGM   86 (242)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEE
T ss_pred             EeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceE
Confidence            34444555444568999999955 9999999999999999999999999998 999999998865332   234567999


Q ss_pred             cCCchH--------HHHHhCCCCCCCh-HHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          133 LPEERI--------RAVETGGCPHAAI-REDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       133 v~q~~~--------~~i~~~g~~~~~~-~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      |||++.        +.+.++....... .+....+.+.|+.+++....+..+.+ ||||+||++|||+|+ +|.++++| 
T Consensus        87 vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDE  166 (242)
T d1oxxk2          87 VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE  166 (242)
T ss_dssp             EETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             EeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecC
Confidence            999863        3444443322222 23334677889999998888998888 999999999999999 48888888 


Q ss_pred             CCCCCCch-------------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 VSGGDKIP-------------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 pt~g~~l~-------------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ||++.|..             ++.+.+           .++||+|++++.|++++.|++.+++.
T Consensus       167 Pt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             TTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99987632             222222           27899999999999999999988875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.1e-31  Score=229.91  Aligned_cols=185  Identities=15%  Similarity=0.165  Sum_probs=138.6

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +.+.+++|.|+.+..+++++++|..+ |++++|+||+|||||||+++|+|+++|+ |+|.+++.++...+..++++.++|
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence            45778999998888889999999955 9999999999999999999999999998 999999999999999999999999


Q ss_pred             cCCchH------HHHHhCCCCCCChHHHHHHHHH--HHHH-cc-ccccCCCcccC-----CchHHHHHHHHHHhc-CCcE
Q 023354          133 LPEERI------RAVETGGCPHAAIREDISINLG--PLEE-LS-NLFKADLLLCE-----SGGDNLAANFSRELA-DYII  196 (283)
Q Consensus       133 v~q~~~------~~i~~~g~~~~~~~~~~~~~~~--~l~~-l~-~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~l  196 (283)
                      |||++.      ..+...+.+.....+ .....+  .+.+ +. ....++..+.+     ||||+||++|||+++ +|.|
T Consensus        82 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i  160 (241)
T d2pmka1          82 VLQDNVLLNRSIIDNISLANPGMSVEK-VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI  160 (241)
T ss_dssp             ECSSCCCTTSBHHHHHCTTSTTCCHHH-HHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             EecccccCCccccccccccCccccHHH-HHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence            999874      122222333333221 111111  1111 11 12334444433     999999999999998 5888


Q ss_pred             EEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHh
Q 023354          197 YIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       197 ~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      +|+| ||++.|...+           .+.          .++.||+|++++.|++++.|++.+++.
T Consensus       161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~  226 (241)
T d2pmka1         161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS  226 (241)
T ss_dssp             EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred             hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            8888 9998763211           111          247899999999999999999988875

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-31  Score=231.86  Aligned_cols=182  Identities=15%  Similarity=0.079  Sum_probs=139.4

Q ss_pred             cCCCCCCCCCC--CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHH---HHHhcc
Q 023354           59 IYSPGYFSRRA--PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGE---FLMRNG  131 (283)
Q Consensus        59 ~~~~~~~~~~~--~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~---~~~~ig  131 (283)
                      +++..|.....  .++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.+   +++++|
T Consensus         6 nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig   85 (240)
T d3dhwc1           6 NITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIG   85 (240)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEE
T ss_pred             eEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhcccc
Confidence            33434444433  47899999955 9999999999999999999999999998 99999999998776644   457899


Q ss_pred             ccCCchH--------HHHHhCCCCC-CChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          132 ALPEERI--------RAVETGGCPH-AAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       132 ~v~q~~~--------~~i~~~g~~~-~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ||||++.        +.+.++.... ....+....+.+.|+.+++.+..+..+.+ ||||+||++|||+|+ +|.|+++|
T Consensus        86 ~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllD  165 (240)
T d3dhwc1          86 MIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD  165 (240)
T ss_dssp             ECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             ccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEec
Confidence            9999863        2222221111 11122334667889999988888988888 999999999999998 58888888


Q ss_pred             -CCCCCCch-------------hhcCCcc-----------cccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIP-------------RKGGPGI-----------TQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~-------------~~~~~~i-----------~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       ||++.|..             ++.+.++           .+||+|++++.|++++.|++.+++.
T Consensus       166 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         166 EATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  230 (240)
T ss_dssp             SGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred             cccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence             99997632             2323331           6899999999999999999887764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.96  E-value=6.2e-31  Score=229.68  Aligned_cols=190  Identities=18%  Similarity=0.185  Sum_probs=145.4

Q ss_pred             CCCCccccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHH
Q 023354           50 GLAPHSHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFL  127 (283)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~  127 (283)
                      -..|.+.+.+++|.|++...+++++++|..+ |++++|+||+|||||||+++|+|+++|+ |+|.+++.++...+..+++
T Consensus        12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr   91 (255)
T d2hyda1          12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR   91 (255)
T ss_dssp             CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred             CCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence            3457899999999999988899999999955 9999999999999999999999999998 9999999999988889999


Q ss_pred             HhccccCCchH-------HHHHhCCCCCCChHHHHHHHHH--HHHHc--cccccCCCcccC-----CchHHHHHHHHHHh
Q 023354          128 MRNGALPEERI-------RAVETGGCPHAAIREDISINLG--PLEEL--SNLFKADLLLCE-----SGGDNLAANFSREL  191 (283)
Q Consensus       128 ~~ig~v~q~~~-------~~i~~~g~~~~~~~~~~~~~~~--~l~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al  191 (283)
                      +.++||+|++.       +.+.+ +.+..... .+..+.+  .+.++  .+..+++..+.+     ||||+||++|||++
T Consensus        92 ~~i~~v~Q~~~lf~~Ti~eNi~~-g~~~~~~~-~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal  169 (255)
T d2hyda1          92 NQIGLVQQDNILFSDTVKENILL-GRPTATDE-EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  169 (255)
T ss_dssp             HTEEEECSSCCCCSSBHHHHHGG-GCSSCCHH-HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             heeeeeeccccCCCCCHHHHHhc-cCcCCCHH-HHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence            99999999874       22333 33333322 2221111  11111  112345555544     99999999999999


Q ss_pred             c-CCcEEEEe-CCCCCCchhh-----------cCC----------cccccCEEEEEcCCcccccCChHHHHhH
Q 023354          192 A-DYIIYIID-VSGGDKIPRK-----------GGP----------GITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       192 ~-~~~l~llD-pt~g~~l~~~-----------~~~----------~i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      + +|.|+++| ||++.|...+           ...          .+.+||+|++++.|++++.|++.+++.+
T Consensus       170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~  242 (255)
T d2hyda1         170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK  242 (255)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            8 58888877 9998753211           011          2478999999999999999999888763

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.96  E-value=8.7e-31  Score=227.36  Aligned_cols=185  Identities=15%  Similarity=0.161  Sum_probs=135.2

Q ss_pred             cccccCCCCCCCCCCCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccc
Q 023354           55 SHEPIYSPGYFSRRAPPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +.+.+++|.|++. ++++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...+...+++++||
T Consensus         2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   80 (242)
T d1mv5a_           2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (242)
T ss_dssp             EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence            3567888998764 468999999955 9999999999999999999999999998 999999999988887788899999


Q ss_pred             cCCchH------HHH-HhCCCCCCChHHHHHHHHHHH--HHc--cccccCCCcccC-----CchHHHHHHHHHHhc-CCc
Q 023354          133 LPEERI------RAV-ETGGCPHAAIREDISINLGPL--EEL--SNLFKADLLLCE-----SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       133 v~q~~~------~~i-~~~g~~~~~~~~~~~~~~~~l--~~l--~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~  195 (283)
                      |||++.      ..+ .++...... .+......+..  ..+  .....++..+.+     ||||+||++|||+++ +|.
T Consensus        81 v~Q~~~lf~~ti~eNi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_          81 VSQDSAIMAGTIRENLTYGLEGDYT-DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             ECCSSCCCCEEHHHHTTSCTTSCSC-HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EccccccCCcchhhheecccccccc-hhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            999874      112 222222222 22222211111  111  112234445543     999999999999998 688


Q ss_pred             EEEEe-CCCCCCchhh-----------cCCc----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          196 IYIID-VSGGDKIPRK-----------GGPG----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       196 l~llD-pt~g~~l~~~-----------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      |+++| ||++.|...+           .+.+          +..||+|++++.|++++.|++.+++..
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~  227 (242)
T d1mv5a_         160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT  227 (242)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred             EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            88887 9998653211           1111          267999999999999999999988763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.96  E-value=2.1e-30  Score=222.23  Aligned_cols=163  Identities=16%  Similarity=0.125  Sum_probs=131.0

Q ss_pred             CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCC
Q 023354           70 PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCP  147 (283)
Q Consensus        70 ~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~  147 (283)
                      .++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.  ++.+|||||++.      .++
T Consensus        14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~v~Q~~~------l~~   85 (229)
T d3d31a2          14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYS------LFP   85 (229)
T ss_dssp             CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEEECTTCC------CCT
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcceeeccccc------cCc
Confidence            37899999855 9999999999999999999999999998 9999999999776654  578999999853      122


Q ss_pred             CCChHHH------------HHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch----
Q 023354          148 HAAIRED------------ISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP----  208 (283)
Q Consensus       148 ~~~~~~~------------~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~----  208 (283)
                      ..++.++            ..++.+.++.+......+..+.+ ||||+||++|||+|+ +|.++++| ||++.|..    
T Consensus        86 ~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~  165 (229)
T d3d31a2          86 HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN  165 (229)
T ss_dssp             TSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHH
T ss_pred             cccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHH
Confidence            2222111            12456778888888888888888 999999999999999 48888888 99997632    


Q ss_pred             ---------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 ---------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 ---------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                               ++.+.+           ..+||+|++++.|++++.|++.+++.
T Consensus       166 i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~  217 (229)
T d3d31a2         166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE  217 (229)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred             HHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence                     222332           26899999999999999999988775

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=1.8e-30  Score=223.14  Aligned_cols=176  Identities=17%  Similarity=0.086  Sum_probs=132.7

Q ss_pred             cCCCCCCCCCC--CCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHH----HHhc
Q 023354           59 IYSPGYFSRRA--PPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEF----LMRN  130 (283)
Q Consensus        59 ~~~~~~~~~~~--~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~----~~~i  130 (283)
                      +++..|.....  .++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+++.++...++.++    ++.+
T Consensus         6 nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~i   85 (230)
T d1l2ta_           6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKI   85 (230)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHE
T ss_pred             eEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceE
Confidence            34444544332  36899999955 9999999999999999999999999998 999999999988876654    3469


Q ss_pred             cccCCchH--------HHHHhC----CCCCCChHHHHHHHHHHHHHccccc-cCCCcccC-CchHHHHHHHHHHhc-CCc
Q 023354          131 GALPEERI--------RAVETG----GCPHAAIREDISINLGPLEELSNLF-KADLLLCE-SGGDNLAANFSRELA-DYI  195 (283)
Q Consensus       131 g~v~q~~~--------~~i~~~----g~~~~~~~~~~~~~~~~l~~l~~~~-~~d~~i~e-SgGq~q~~~ia~al~-~~~  195 (283)
                      |||||++.        +.+.++    ........+....+.+.|+.+.+.+ ..+..+.+ ||||+||++|||||+ +|.
T Consensus        86 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~  165 (230)
T d1l2ta_          86 GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPP  165 (230)
T ss_dssp             EEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCC
Confidence            99999863        222221    2222233444456777888887765 45777777 999999999999999 588


Q ss_pred             EEEEe-CCCCCCch-------------hhcCCc----------ccccCEEEEEcCCcccccCC
Q 023354          196 IYIID-VSGGDKIP-------------RKGGPG----------ITQADLLVINKTDLASAIGA  234 (283)
Q Consensus       196 l~llD-pt~g~~l~-------------~~~~~~----------i~~ad~ivi~K~g~i~~~g~  234 (283)
                      |+++| ||++.|..             ++.+.+          .++||+|++++.|+++++|+
T Consensus       166 lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~  228 (230)
T d1l2ta_         166 IILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK  228 (230)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred             EEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEecc
Confidence            88888 99997632             222332          27899999999999998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.96  E-value=6e-31  Score=227.32  Aligned_cols=172  Identities=13%  Similarity=0.066  Sum_probs=133.4

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHH----HHHHhccccCCchH----
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDG----EFLMRNGALPEERI----  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~----~~~~~ig~v~q~~~----  138 (283)
                      ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++......    ..++.+|||||++.    
T Consensus        16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~   95 (240)
T d1g2912          16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH   95 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT
T ss_pred             EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcch
Confidence            45889999984 59999999999999999999999999998 9999999887654332    23567999999863    


Q ss_pred             ----HHHHhCCCCCC-ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch--
Q 023354          139 ----RAVETGGCPHA-AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP--  208 (283)
Q Consensus       139 ----~~i~~~g~~~~-~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~--  208 (283)
                          +.+.++...+. ...+....+.+.|+.+++....+..+.+ ||||+||++|||+|+ +|.|+++| ||++.|..  
T Consensus        96 ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~  175 (240)
T d1g2912          96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR  175 (240)
T ss_dssp             SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred             hhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHH
Confidence                22222221111 1223334577788888888888888888 999999999999998 58888888 99997632  


Q ss_pred             -----------hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 -----------RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 -----------~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                                 ++.+.+           ..+||+|++++.|++++.|++.+++.
T Consensus       176 ~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence                       222333           26799999999999999999988764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.2e-29  Score=218.74  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=130.3

Q ss_pred             cccccCCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------HHHHhC
Q 023354           74 SRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAVETG  144 (283)
Q Consensus        74 ~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i~~~  144 (283)
                      +++|...+++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.  ++++|||||++.        +.+.++
T Consensus        17 ~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~ltV~enl~~~   94 (240)
T d2onka1          17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYG   94 (240)
T ss_dssp             EEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred             EEEEEeCCEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeeccchhhcccchhhHhhhhh
Confidence            56777667899999999999999999999999998 9999999999876654  478999999853        334444


Q ss_pred             CCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch-------------
Q 023354          145 GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP-------------  208 (283)
Q Consensus       145 g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~-------------  208 (283)
                      .. .....+..+++.+.++.+++.+..++.+.+ ||||+||++|||+++ +|.++++| ||++.|..             
T Consensus        95 l~-~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~  173 (240)
T d2onka1          95 LR-NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ  173 (240)
T ss_dssp             CT-TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred             hc-ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHH
Confidence            32 222233334677889999888888888888 999999999999999 58888887 99997632             


Q ss_pred             hhcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 RKGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 ~~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      ++.+.+           ..+||+|++++.|++++.|++.+++.
T Consensus       174 ~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         174 REFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence            222222           26899999999999999999988763

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.96  E-value=1.9e-29  Score=218.59  Aligned_cols=176  Identities=17%  Similarity=0.111  Sum_probs=130.6

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH-hccccCCchH-------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI-------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~-------  138 (283)
                      ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...+...+.+ .++|+||+..       
T Consensus        19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv   98 (240)
T d1ji0a_          19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV   98 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred             EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccH
Confidence            45789999985 59999999999999999999999999998 99999999998877655543 4789998752       


Q ss_pred             -HHHHhCCCCCCChHHHHHHHHHHHHHc-cccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCchh----
Q 023354          139 -RAVETGGCPHAAIREDISINLGPLEEL-SNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-VSGGDKIPR----  209 (283)
Q Consensus       139 -~~i~~~g~~~~~~~~~~~~~~~~l~~l-~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~~----  209 (283)
                       +.+.++.................+..+ .+....+.++.+ ||||+||+.|||+|+ +|.++++| ||+|.|...    
T Consensus        99 ~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i  178 (240)
T d1ji0a_          99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV  178 (240)
T ss_dssp             HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHH
Confidence             223333222222111222233344444 345667777777 999999999999999 48888888 999976421    


Q ss_pred             --------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHH
Q 023354          210 --------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMERDAL  244 (283)
Q Consensus       210 --------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~  244 (283)
                              +.+.+           .++||+|++++.|++++.|++.+++.....
T Consensus       179 ~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~v  232 (240)
T d1ji0a_         179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMV  232 (240)
T ss_dssp             HHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCHHH
Confidence                    11222           278999999999999999999998875433

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=9.9e-29  Score=215.92  Aligned_cols=173  Identities=19%  Similarity=0.124  Sum_probs=135.1

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHH-hccccCCchH-------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLM-RNGALPEERI-------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~-~ig~v~q~~~-------  138 (283)
                      ..++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++...++.++++ .++++||++.       
T Consensus        17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv   96 (254)
T d1g6ha_          17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV   96 (254)
T ss_dssp             EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred             eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCee
Confidence            35789999985 59999999999999999999999999998 99999999998888877655 4999999873       


Q ss_pred             -HHHHhCCCCCC--------------ChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          139 -RAVETGGCPHA--------------AIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       139 -~~i~~~g~~~~--------------~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                       +.+.++.....              ...+....+.+.++.+......+..+.+ ||||+||+.|||+|+ +|.++++| 
T Consensus        97 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDE  176 (254)
T d1g6ha_          97 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE  176 (254)
T ss_dssp             HHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             eeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcC
Confidence             22333321110              1122334566778888877788888888 999999999999998 58888888 


Q ss_pred             CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHhH
Q 023354          201 VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       201 pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      ||+|.|...            +.+.+           .++||+|++++.|+++++|++.+.+..
T Consensus       177 Pt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~~  240 (254)
T d1g6ha_         177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN  240 (254)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhhc
Confidence            999976421            11222           378999999999999999988876543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=1e-28  Score=215.95  Aligned_cols=172  Identities=12%  Similarity=0.071  Sum_probs=130.0

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCC-------------HHHHHHhcccc
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKE-------------DGEFLMRNGAL  133 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~-------------~~~~~~~ig~v  133 (283)
                      ..++++++|..+ |++++|+||||||||||+++|+|+++|+ |+|.+.+.++....             ...+++++|||
T Consensus        15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~v   94 (258)
T d1b0ua_          15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV   94 (258)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred             EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEE
Confidence            358899999855 9999999999999999999999999998 99999998875321             13467789999


Q ss_pred             CCchH--------HHHHhCC--CCCCChHHHHHHHHHHHHHcccccc-CCCcccC-CchHHHHHHHHHHhc-CCcEEEEe
Q 023354          134 PEERI--------RAVETGG--CPHAAIREDISINLGPLEELSNLFK-ADLLLCE-SGGDNLAANFSRELA-DYIIYIID  200 (283)
Q Consensus       134 ~q~~~--------~~i~~~g--~~~~~~~~~~~~~~~~l~~l~~~~~-~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD  200 (283)
                      ||++.        +.+..+.  .......+....+.+.++.+++... .++.+.+ ||||+||++|||+|+ +|.|+++|
T Consensus        95 fQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilD  174 (258)
T d1b0ua_          95 FQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD  174 (258)
T ss_dssp             CSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             EechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEec
Confidence            99853        2222221  1111223333456778888877663 4665666 999999999999998 58888888


Q ss_pred             -CCCCCCchh------------hcCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          201 -VSGGDKIPR------------KGGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       201 -pt~g~~l~~------------~~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                       ||++.|...            +.+.+           ..+||+|++++.|++++.|++.+++.
T Consensus       175 EPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         175 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG  238 (258)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence             999976421            11222           26899999999999999999988875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=2.8e-28  Score=210.84  Aligned_cols=171  Identities=17%  Similarity=0.097  Sum_probs=129.5

Q ss_pred             CCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH--------
Q 023354           69 APPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI--------  138 (283)
Q Consensus        69 ~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------  138 (283)
                      ..++++++|.. +|+++||+||||||||||+++|+|+++|+ |+|.+.+.++.. .+..+++.+||+||...        
T Consensus        15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i~~vpq~~~~~~~ltv~   93 (238)
T d1vpla_          15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGI   93 (238)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHH
T ss_pred             EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhEeEeeeccccCCCccHH
Confidence            45899999995 59999999999999999999999999998 999999999865 34567788999999752        


Q ss_pred             HHHHhC-CCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhcC-CcEEEEe-CCCCCCchhh----
Q 023354          139 RAVETG-GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELAD-YIIYIID-VSGGDKIPRK----  210 (283)
Q Consensus       139 ~~i~~~-g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~~-~~l~llD-pt~g~~l~~~----  210 (283)
                      +.+.+. ++......+....+...++.+.+....+..+.+ |+||+||+.||++++. |.++++| |++|.|...+    
T Consensus        94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~  173 (238)
T d1vpla_          94 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR  173 (238)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence            122111 111111122223445566777777777777777 9999999999999994 8888888 9999774321    


Q ss_pred             --------cCCc-----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          211 --------GGPG-----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       211 --------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                              .+.+           ..+||+|++++.|++++.|++.++..
T Consensus       174 ~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~  222 (238)
T d1vpla_         174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE  222 (238)
T ss_dssp             HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence                    1222           26899999999999999999877654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.2e-27  Score=202.83  Aligned_cols=175  Identities=13%  Similarity=0.091  Sum_probs=133.0

Q ss_pred             CcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCHHHHHHhccccCCchH--------HHH
Q 023354           71 PILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERI--------RAV  141 (283)
Q Consensus        71 ~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~--------~~i  141 (283)
                      ++++++|.. +|++++|+||||||||||+++|+|+.+.+|+|.+.+.++..++..+++...+|++|...        .++
T Consensus        14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   93 (231)
T d1l7vc_          14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL   93 (231)
T ss_dssp             TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHH
T ss_pred             eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHh
Confidence            588899985 49999999999999999999999987555999999999888888888888889887642        122


Q ss_pred             HhCCCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc--------CCcEEEEe-CCCCCCchhh-
Q 023354          142 ETGGCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA--------DYIIYIID-VSGGDKIPRK-  210 (283)
Q Consensus       142 ~~~g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~--------~~~l~llD-pt~g~~l~~~-  210 (283)
                      ..+.... .   ..+.+.+.++.+......+..+.+ ||||+||+.+|++++        +|.|+++| |+++.|...+ 
T Consensus        94 ~~~~~~~-~---~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~  169 (231)
T d1l7vc_          94 TLHQHDK-T---RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS  169 (231)
T ss_dssp             HHHCSCT-T---CHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHH
T ss_pred             hhccchh-h---HHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHH
Confidence            2222211 1   112334566667777777777777 999999999999997        35788888 9999774321 


Q ss_pred             -----------cCCc-----------ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCC
Q 023354          211 -----------GGPG-----------ITQADLLVINKTDLASAIGADLAVMERDALRMRDG  249 (283)
Q Consensus       211 -----------~~~~-----------i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~  249 (283)
                                 .+.+           ..+||++++++.|++++.|++.+++........|+
T Consensus       170 ~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~~l~~~yg  230 (231)
T d1l7vc_         170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYG  230 (231)
T ss_dssp             HHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCChHHHHhhC
Confidence                       1222           27899999999999999999999988766655544

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.2e-25  Score=197.05  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=108.6

Q ss_pred             CCCcccccccCC-CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchH-------H
Q 023354           69 APPILSRNFNER-AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERI-------R  139 (283)
Q Consensus        69 ~~~~~~~~~~~~-g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~-------~  139 (283)
                      .+++++++|..+ |++++|+||||||||||+++|+|+++|+ |.|.+.+             +++|++|++.       +
T Consensus        49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~e  115 (281)
T d1r0wa_          49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKE  115 (281)
T ss_dssp             CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEEECSSCCCCSEEHHH
T ss_pred             CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEEEeccccccCceeec
Confidence            468999999855 9999999999999999999999999998 9988765             3788888753       2


Q ss_pred             HHHhCCCCCCChHHHHHHHHHHH---HHc-cccccCCCcccC-----CchHHHHHHHHHHhc-CCcEEEEe-CCCCCCch
Q 023354          140 AVETGGCPHAAIREDISINLGPL---EEL-SNLFKADLLLCE-----SGGDNLAANFSRELA-DYIIYIID-VSGGDKIP  208 (283)
Q Consensus       140 ~i~~~g~~~~~~~~~~~~~~~~l---~~l-~~~~~~d~~i~e-----SgGq~q~~~ia~al~-~~~l~llD-pt~g~~l~  208 (283)
                      .+.++ ....  ......+.+..   ..+ ......+..+.+     ||||+||++|||+|+ +|.|+++| ||++.|..
T Consensus       116 ni~~~-~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~  192 (281)
T d1r0wa_         116 NIIFG-VSYD--EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF  192 (281)
T ss_dssp             HHTTT-SCCC--HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred             ccccc-cccc--chHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHH
Confidence            22232 2111  11111111111   111 111223333332     999999999999998 58888888 99987642


Q ss_pred             hh------------cCCc----------ccccCEEEEEcCCcccccCChHHHHh
Q 023354          209 RK------------GGPG----------ITQADLLVINKTDLASAIGADLAVME  240 (283)
Q Consensus       209 ~~------------~~~~----------i~~ad~ivi~K~g~i~~~g~~~e~~~  240 (283)
                      .+            .+.+          +++||+|++++.|++++.|++.+++.
T Consensus       193 ~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         193 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             HHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            11            0111          27899999999999999999988765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.89  E-value=1e-24  Score=183.78  Aligned_cols=141  Identities=21%  Similarity=0.163  Sum_probs=100.1

Q ss_pred             ccccCCCCCCCCCCCCcccccccC-CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhcccc
Q 023354           56 HEPIYSPGYFSRRAPPILSRNFNE-RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGAL  133 (283)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v  133 (283)
                      ...+.+++|.   .+++++++|.. +|++++|+||||||||||+++|+|+++|+ |+|.+.+.++..     ++.+++|+
T Consensus         4 ev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~~~   75 (200)
T d1sgwa_           4 EIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFL   75 (200)
T ss_dssp             EEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEEEE
T ss_pred             EEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEEEE
Confidence            3445666662   35799999985 59999999999999999999999999998 999999887743     45678999


Q ss_pred             CCchH--------HHHHhC--CCCCCChHHHHHHHHHHHHHccccccCCCcccC-CchHHHHHHHHHHhc-CCcEEEEe-
Q 023354          134 PEERI--------RAVETG--GCPHAAIREDISINLGPLEELSNLFKADLLLCE-SGGDNLAANFSRELA-DYIIYIID-  200 (283)
Q Consensus       134 ~q~~~--------~~i~~~--g~~~~~~~~~~~~~~~~l~~l~~~~~~d~~i~e-SgGq~q~~~ia~al~-~~~l~llD-  200 (283)
                      ||+..        +++...  .+.....+   ..+.+.++.+...+ .+..+.+ |+||+||+.+|++++ +|.++++| 
T Consensus        76 ~~~~~~~~~~t~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDE  151 (200)
T d1sgwa_          76 PEEIIVPRKISVEDYLKAVASLYGVKVNK---NEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD  151 (200)
T ss_dssp             CSSCCCCTTSBHHHHHHHHHHHTTCCCCH---HHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred             eecccCCCCcCHHHHHHHHHHhcCCccCH---HHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcC
Confidence            88642        111111  01001111   23345566654433 3344556 999999999999998 58888888 


Q ss_pred             CCCCCCch
Q 023354          201 VSGGDKIP  208 (283)
Q Consensus       201 pt~g~~l~  208 (283)
                      |+++.|..
T Consensus       152 Pt~gLD~~  159 (200)
T d1sgwa_         152 PVVAIDED  159 (200)
T ss_dssp             TTTTSCTT
T ss_pred             cccccCHH
Confidence            99997653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.77  E-value=3.9e-19  Score=159.57  Aligned_cols=191  Identities=20%  Similarity=0.235  Sum_probs=126.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCCh------
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI------  151 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~------  151 (283)
                      .+..+|||.||+|||||||+..|+..+... -++.++.+|+.+...      -|.+..+..++......+++.+      
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~------gg~llgdr~rm~~~~~~~~~~ir~~~~~  122 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRT------GGSILGDKTRMARLAIDRNAFIRPSPSS  122 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSS------CCCSSCCGGGSTTGGGCTTEEEECCCCC
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHH------HhccccchhhHHHHhcccceeecccccc
Confidence            457899999999999999999999876644 689999999875321      2333333333333322222111      


Q ss_pred             --HHHHH-HHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCc
Q 023354          152 --REDIS-INLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL  228 (283)
Q Consensus       152 --~~~~~-~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~  228 (283)
                        ...+. ...+.+. +....++|.+++|+.|..|.-.....++|..++++.|..|++++..+..+++.||.+|+||.|+
T Consensus       123 ~~~gg~~~~~~~~i~-~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~aDi~vvNKaD~  201 (323)
T d2qm8a1         123 GTLGGVAAKTRETML-LCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADD  201 (323)
T ss_dssp             SSHHHHHHHHHHHHH-HHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCST
T ss_pred             ccccchhHHHHHHHH-hhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeeccchhhhhhhhhhHhhhhheeeEecccc
Confidence              11122 2222222 2244579999999888888777777788999999999999999998888899999999999997


Q ss_pred             ccccCChHHHHhHHHH--hhc------CCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          229 ASAIGADLAVMERDAL--RMR------DGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       229 i~~~g~~~e~~~~~~~--~~~------~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ................  ...      ...|++.+|+++++|+++|+++|...++.
T Consensus       202 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         202 GDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            6553222222211111  111      34689999999999999999999887653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.4e-18  Score=154.58  Aligned_cols=189  Identities=21%  Similarity=0.247  Sum_probs=116.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCCh-----H
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAI-----R  152 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~~-----~  152 (283)
                      .+..+|||.||+|||||||++.|+..+... .+|.++..|+.+....      |.+..+..++...+..++..+     +
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~g------gailgdr~rm~~~~~~~~~~ir~~~~~  125 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTG------GSILGDKTRMNDLARAEAAFIRPVPSS  125 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------------CTTTTCTTEEEEEECC-
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeec------cccccchhHHHHhcccccccccccccc
Confidence            457899999999999999999999988766 5899999998764321      112222222222222222211     0


Q ss_pred             ---HHHH-HHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhcCCcccccCEEEEEcCCc
Q 023354          153 ---EDIS-INLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDL  228 (283)
Q Consensus       153 ---~~~~-~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~~~~i~~ad~ivi~K~g~  228 (283)
                         ..+. ...+.+ .+....++|.+++|+.|..|...-....+|..++++.|..|++++......++.||.+||||.|+
T Consensus       126 g~lgg~~~~~~~~~-~~~~~~g~d~iliEtvG~gq~e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aDi~VvNKaD~  204 (327)
T d2p67a1         126 GHLGGASQRARELM-LLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDG  204 (327)
T ss_dssp             ----CHHHHHHHHH-HHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCT
T ss_pred             cccccchhhhhHHH-HHHHhcCCCeEEEeeccccccchhhhhccceEEEEecCCCchhhhhhchhhhccccEEEEEeecc
Confidence               0111 122222 22244578999999888777766666788999999999999998876666789999999999997


Q ss_pred             ccccCCh--HHHHhHHHHhhc------CCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          229 ASAIGAD--LAVMERDALRMR------DGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       229 i~~~g~~--~e~~~~~~~~~~------~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      -......  ...+. ..+...      ...|++.+|+.+|.|+++|++.|.+...
T Consensus       205 ~~~~~~~~~~~~~~-~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         205 DNHTNVAIARHMYE-SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             TCHHHHHHHHHHHH-HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHH-HHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            6442111  11111 122221      1246889999999999999999988764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=8.4e-16  Score=130.62  Aligned_cols=176  Identities=18%  Similarity=0.252  Sum_probs=115.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCC-HHHHHHhccccCCchHHHHHhCCCCCCChHHHHHH-
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKE-DGEFLMRNGALPEERIRAVETGGCPHAAIREDISI-  157 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~-~~~~~~~ig~v~q~~~~~i~~~g~~~~~~~~~~~~-  157 (283)
                      +-+++.|.|+.||||||||+.|+.. ++..++.++.++++... +.++....+.     ......+||.||.....+.. 
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~-~~~~riaVI~Ne~g~~~iD~~~~~~~~~-----~~~el~~gcicc~~~~~~~~~   75 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE-QHGYKIAVIENEFGEVSVDDQLIGDRAT-----QIKTLTNGCICCSRSNELEDA   75 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS-CCCCCEEEECSSCCSCCEEEEEECTTSC-----EEEEETTSCEEECTTSCHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc-CCCCcEEEEEecccchhhhhhhhccccc-----ceEEecCCcceeccchhHHHH
Confidence            3478999999999999999999885 23358999999987643 2221111110     01123678999876554432 


Q ss_pred             HHHHHHHccc-cccCCCcccCCchHHHHHHHHHHh-----------cCCcEEEEeCCCCCCchhh---cCCcccccCEEE
Q 023354          158 NLGPLEELSN-LFKADLLLCESGGDNLAANFSREL-----------ADYIIYIIDVSGGDKIPRK---GGPGITQADLLV  222 (283)
Q Consensus       158 ~~~~l~~l~~-~~~~d~~i~eSgGq~q~~~ia~al-----------~~~~l~llDpt~g~~l~~~---~~~~i~~ad~iv  222 (283)
                      ....+..+.. ...++++++|+.|......+...+           .+.+|.++|++.+.+....   ...++++||.|+
T Consensus        76 l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~iv  155 (222)
T d1nija1          76 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  155 (222)
T ss_dssp             HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCCccc
Confidence            2223333322 245799999977766555555433           1357889999887543332   234678999999


Q ss_pred             EEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       223 i~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l  266 (283)
                      +||.|++..    .+.+.+.++..+|.++++.++. ....++.|
T Consensus       156 lNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~~-g~v~~~~l  194 (222)
T d1nija1         156 LTKTDVAGE----AEKLHERLARINARAPVYTVTH-GDIDLGLL  194 (222)
T ss_dssp             EECTTTCSC----THHHHHHHHHHCSSSCEEECCS-SCCCGGGG
T ss_pred             ccccccccH----HHHHHHHHHHHhCCCeEEEeeC-CccCHHHh
Confidence            999998753    3567788899999999987552 23344444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.41  E-value=3.4e-14  Score=120.34  Aligned_cols=186  Identities=19%  Similarity=0.168  Sum_probs=101.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecCCCCCH-H----HHHHhccc--cCCchHHHHHhCCCCCCC--hHH
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKED-G----EFLMRNGA--LPEERIRAVETGGCPHAA--IRE  153 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~~~~~~-~----~~~~~ig~--v~q~~~~~i~~~g~~~~~--~~~  153 (283)
                      +|+|+||+|||||||++.|+..+.....+.++..|+..... .    +.+..+.+  ....  .....+++.+|.  ..+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   79 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE--GYGPNGAIVESYDRLME   79 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT--TCCHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHh--hhccCCchhhhhHhHHh
Confidence            68999999999999999998866544677777777654221 0    00000000  0000  000111221111  111


Q ss_pred             HHHHHHHHHHHccccccCCCcccCCchHHHHHHHHH---Hhc-----CCcEEEEeCCCCCCchhhc---------CCccc
Q 023354          154 DISINLGPLEELSNLFKADLLLCESGGDNLAANFSR---ELA-----DYIIYIIDVSGGDKIPRKG---------GPGIT  216 (283)
Q Consensus       154 ~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~---al~-----~~~l~llDpt~g~~l~~~~---------~~~i~  216 (283)
                      ........+..  .....+..+.++.|+........   .++     +..++++|+..+.+.+...         ..++.
T Consensus        80 ~~~~~~~~~~~--~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~  157 (244)
T d1yrba1          80 KFNEYLNKILR--LEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLG  157 (244)
T ss_dssp             THHHHHHHHHH--HHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHh--hccccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhC
Confidence            11111111111  12245666667777654432211   122     2567888877665433211         12346


Q ss_pred             ccCEEEEEcCCcccccCChHHHHh------------------------H----HHHhhcCCCCeEEEEeccCCCHHHHHH
Q 023354          217 QADLLVINKTDLASAIGADLAVME------------------------R----DALRMRDGGPFIFAQVKHGLGVEEIVN  268 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~------------------------~----~~~~~~~~~~i~~isa~~g~gi~~l~~  268 (283)
                      .++.+++||.|++.+.  ..+...                        .    .+.+.....|++++||++|+|+++|++
T Consensus       158 ~~~ivvinK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~  235 (244)
T d1yrba1         158 ATTIPALNKVDLLSEE--EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET  235 (244)
T ss_dssp             SCEEEEECCGGGCCHH--HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred             CCceeeeeccccccHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence            7899999999988652  111100                        0    011223567899999999999999999


Q ss_pred             HHHHHH
Q 023354          269 HILQAW  274 (283)
Q Consensus       269 ~l~~~~  274 (283)
                      +|.+.|
T Consensus       236 ~l~e~~  241 (244)
T d1yrba1         236 LAYEHY  241 (244)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998865

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.35  E-value=1.4e-12  Score=106.21  Aligned_cols=86  Identities=21%  Similarity=0.295  Sum_probs=55.6

Q ss_pred             cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCC-hHHHHhHHHHhh---cCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGA-DLAVMERDALRM---RDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~-~~e~~~~~~~~~---~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|+..+...+.+.    ......+-.+++||.|++..+.. ..+.+.+.+.+.   ..+.|++++||++|+|+
T Consensus        83 ~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi  162 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGV  162 (179)
T ss_dssp             CCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTH
T ss_pred             ccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCH
Confidence            36788899998875322110    00123456899999999765210 011122233332   23568999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 023354          264 EEIVNHILQAWEAS  277 (283)
Q Consensus       264 ~~l~~~l~~~~~~~  277 (283)
                      ++|+++|.+..+++
T Consensus       163 ~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         163 DELKNLIITTLNNA  176 (179)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCcc
Confidence            99999999887754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=2.6e-12  Score=104.53  Aligned_cols=88  Identities=19%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             HhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhh---cCCCCeEEEEeccCCC
Q 023354          190 ELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGADLAVMERDALRM---RDGGPFIFAQVKHGLG  262 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~---~~~~~i~~isa~~g~g  262 (283)
                      ..++.+++++|+..+..-....    .........+++||+|++.......+.+.+.+.+.   ....|++++||++|.|
T Consensus        90 ~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~g  169 (186)
T d1mkya2          90 EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWN  169 (186)
T ss_dssp             HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBS
T ss_pred             hcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCC
Confidence            3467889999987653221110    00112345888999998866433344444444433   3467899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 023354          263 VEEIVNHILQAWEAS  277 (283)
Q Consensus       263 i~~l~~~l~~~~~~~  277 (283)
                      +++|+++|.+.++.+
T Consensus       170 v~~L~~~i~~~~~~~  184 (186)
T d1mkya2         170 IDRMIDAMNLAYASY  184 (186)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999988765

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=7.9e-13  Score=107.34  Aligned_cols=80  Identities=15%  Similarity=0.070  Sum_probs=53.8

Q ss_pred             cCCcEEEEeCCCCCCchhh-----cCC-cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRK-----GGP-GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~-----~~~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      ++.+|+++|++.+.....+     ... .-...-.+|+||+|++..   . +...+...+..+...++++||++|.|+++
T Consensus        85 ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~---~-~~~~~~~~~~~~~~~~~~iSA~~~~gi~~  160 (178)
T d1wf3a1          85 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY---P-EEAMKAYHELLPEAEPRMLSALDERQVAE  160 (178)
T ss_dssp             CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS---H-HHHHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred             ccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccC---H-HHHHHHHHhhcccCceEEEecCCCCCHHH
Confidence            4678899998775321111     000 012344789999998653   2 33334455666777889999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          266 IVNHILQAWE  275 (283)
Q Consensus       266 l~~~l~~~~~  275 (283)
                      |+++|.+.++
T Consensus       161 L~~~i~~~lp  170 (178)
T d1wf3a1         161 LKADLLALMP  170 (178)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHHhCC
Confidence            9999987654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.20  E-value=8e-12  Score=102.62  Aligned_cols=80  Identities=11%  Similarity=0.081  Sum_probs=51.4

Q ss_pred             CCcEEEEeCCCCCCchh-hc---CCcccccCEEEEEcCCcccccCChHHHHhHHH---HhhcCCCCeEEEEeccCCCHHH
Q 023354          193 DYIIYIIDVSGGDKIPR-KG---GPGITQADLLVINKTDLASAIGADLAVMERDA---LRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~-~~---~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~---~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      +.+++++|...+..-.. +.   .......-.+|+||+|++..  ...+...+.+   +...++.+++.+||++|+|+++
T Consensus       107 ~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~e  184 (195)
T d1svia_         107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK--GKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDE  184 (195)
T ss_dssp             EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHH
T ss_pred             hhhhhhhhccccccccccccccccccccCcceechhhccccCH--HHHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHH
Confidence            46788899876532111 00   01123345899999998754  2222222222   3334677899999999999999


Q ss_pred             HHHHHHHHH
Q 023354          266 IVNHILQAW  274 (283)
Q Consensus       266 l~~~l~~~~  274 (283)
                      ++++|.+..
T Consensus       185 l~~~i~~~l  193 (195)
T d1svia_         185 AWGAIKKMI  193 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.4e-12  Score=102.20  Aligned_cols=74  Identities=22%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             hcCCcEEEEeCCCCCCch--hhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          191 LADYIIYIIDVSGGDKIP--RKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       191 l~~~~l~llDpt~g~~l~--~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      -++..++++|+.....+.  ....     ..-...-.+|+||+|+.....         .+......+++++||++|.|+
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~---------~~~~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL---------GMSEVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC---------EEEEETTEEEEECCTTTCTTH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHH---------HHHHhCCCcEEEEECCCCCCH
Confidence            346778888876643211  1000     001334479999999765421         122345678999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          264 EEIVNHILQA  273 (283)
Q Consensus       264 ~~l~~~l~~~  273 (283)
                      ++|+++|.+.
T Consensus       151 ~~L~~~l~~~  160 (161)
T d2gj8a1         151 DVLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.14  E-value=3.6e-11  Score=96.57  Aligned_cols=84  Identities=17%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             cCCcEEEEeCCCCCCchhhc-CC---cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG-GP---GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV  267 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~-~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~  267 (283)
                      ++.++++.|+..+.....+. ..   .....-.+++||.|++..   ....+...+.+ ....+++++||++|.|+++|+
T Consensus        81 ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~---~~~~~~~~~~~-~~~~~~i~iSAk~g~gid~L~  156 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE---FEREVKPELYS-LGFGEPIPVSAEHNINLDTML  156 (171)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH---HHHHTHHHHGG-GSSCSCEECBTTTTBSHHHHH
T ss_pred             CcEEEEeecccccccccccccccccccccccccccchhhhhhhh---hhhHHHHHHHh-cCCCCeEEEecCCCCCHHHHH
Confidence            45667777876653221110 00   012234888999998754   22222223333 245577999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 023354          268 NHILQAWEASTG  279 (283)
Q Consensus       268 ~~l~~~~~~~~~  279 (283)
                      ++|.+.+++..-
T Consensus       157 ~~i~~~l~e~~~  168 (171)
T d1mkya1         157 ETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHhCCCCCC
Confidence            999998876543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=1.6e-11  Score=99.49  Aligned_cols=57  Identities=16%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             ccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Q 023354          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEAS  277 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~  277 (283)
                      ..-.+++||+|++..  ...+.+.+.+.  ..+.+++.+||++|+|+++|++.|.+.....
T Consensus       114 ~p~iiv~NK~D~~~~--~~~~~~~~~~~--~~~~~~~~iSA~tg~gid~L~~~i~~~l~~~  170 (180)
T d1udxa2         114 RPSLVALNKVDLLEE--EAVKALADALA--REGLAVLPVSALTGAGLPALKEALHALVRST  170 (180)
T ss_dssp             SCEEEEEECCTTSCH--HHHHHHHHHHH--TTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             hhhhhhhhhhhhhhH--HHHHHHHHHHH--hcCCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            345889999999765  22232323332  2467899999999999999999998887643

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=5e-11  Score=96.34  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=38.0

Q ss_pred             ccCEEEEEcCCcccccCChHHHHhHHHHhhc-----CCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          217 QADLLVINKTDLASAIGADLAVMERDALRMR-----DGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~-----~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      .+-.+|+||+|++..   ..+..........     ...+++++||++|.|+++|+++|.+.+++
T Consensus       122 ~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         122 IPTIVAVNKLDKIKN---VQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCEEEEEECGGGCSC---HHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeeehhhh---HHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            344899999998754   2222222111111     12347789999999999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=5.8e-11  Score=93.89  Aligned_cols=78  Identities=19%  Similarity=0.266  Sum_probs=51.9

Q ss_pred             HhcCCcEEEEeCCCCCCchhhc-C-CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHH
Q 023354          190 ELADYIIYIIDVSGGDKIPRKG-G-PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV  267 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~-~-~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~  267 (283)
                      ..++.+++++|++.+....... . ......-.+++||.|.+..  ...+.+.   .......+++++||++|.|+++|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~--~~~~~~~---~~~~~~~~~~~vSA~~g~gi~~L~  153 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEK--INEEEIK---NKLGTDRHMVKISALKGEGLEKLE  153 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCC--CCHHHHH---HHHTCSTTEEEEEGGGTCCHHHHH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccch--hhhHHHH---HHhCCCCcEEEEECCCCCCHHHHH
Confidence            3467889999998764322110 0 0113345788999998765  2333322   233456789999999999999999


Q ss_pred             HHHHH
Q 023354          268 NHILQ  272 (283)
Q Consensus       268 ~~l~~  272 (283)
                      ++|.+
T Consensus       154 ~~I~k  158 (160)
T d1xzpa2         154 ESIYR  158 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98854

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.06  E-value=3e-11  Score=98.21  Aligned_cols=56  Identities=20%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             ccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          217 QADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      ..-.+++||+|+...    .+.+.........+.|++.+||++|.|+++|+++|.+.++.
T Consensus       118 kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         118 RPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             SCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             CcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            345799999998643    23333333344567899999999999999999999888754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.96  E-value=4e-11  Score=101.30  Aligned_cols=87  Identities=16%  Similarity=0.133  Sum_probs=53.7

Q ss_pred             cCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccccCCh-------------HH---HHh----HH---HH
Q 023354          192 ADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASAIGAD-------------LA---VME----RD---AL  244 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~~g~~-------------~e---~~~----~~---~~  244 (283)
                      +|..|+|+|+..|...+.+.    ......+-.|++||+|++...-..             ..   .+.    ..   +.
T Consensus        94 ~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~  173 (227)
T d1g7sa4          94 ADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLH  173 (227)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            57899999998875433211    011244568999999998653110             00   000    00   00


Q ss_pred             hh-------------cCCCCeEEEEeccCCCHHHHHHHHHHHHHHhh
Q 023354          245 RM-------------RDGGPFIFAQVKHGLGVEEIVNHILQAWEAST  278 (283)
Q Consensus       245 ~~-------------~~~~~i~~isa~~g~gi~~l~~~l~~~~~~~~  278 (283)
                      ..             ....+++++|+++|.|+++|++.|....++.-
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~  220 (227)
T d1g7sa4         174 EEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (227)
T ss_dssp             HTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence            00             11357899999999999999999988776543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=1.8e-10  Score=92.50  Aligned_cols=58  Identities=17%  Similarity=0.115  Sum_probs=41.9

Q ss_pred             cCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 023354          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWEA  276 (283)
Q Consensus       218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~~  276 (283)
                      .-.++++|.+.+.... ........+.......+++++||++|.|+++|+++|.+.+++
T Consensus       115 ~~i~v~~k~d~~~~~~-~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         115 PVILAVNKVDNVQEKA-DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             CEEEEEESTTTCCCHH-HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             ceeeeeeeeeccchhh-hhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCCC
Confidence            3488999999876521 122223445555667899999999999999999999876643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.96  E-value=1.8e-09  Score=86.40  Aligned_cols=81  Identities=15%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             CCcEEEEeCCCCCC---chhhc-------C--CcccccCEEEEEcCCcccccC-ChHHHHhHHHHhhcCCCCeEEEEecc
Q 023354          193 DYIIYIIDVSGGDK---IPRKG-------G--PGITQADLLVINKTDLASAIG-ADLAVMERDALRMRDGGPFIFAQVKH  259 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~~~~-------~--~~i~~ad~ivi~K~g~i~~~g-~~~e~~~~~~~~~~~~~~i~~isa~~  259 (283)
                      +..+++.|.+....   +....       .  ..-..+-.|+.||+|+..... ...+... .+.+.....+++++||++
T Consensus        77 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~-~~~~~~~~~~~~e~SA~~  155 (175)
T d1ky3a_          77 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ-ELAKSLGDIPLFLTSAKN  155 (175)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH-HHHHHTTSCCEEEEBTTT
T ss_pred             ceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHH-HHHHHcCCCeEEEEeCCC
Confidence            56788889876321   11100       0  011234578999999865422 2223332 233444567899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQAW  274 (283)
Q Consensus       260 g~gi~~l~~~l~~~~  274 (283)
                      |.|+++++++|.+..
T Consensus       156 g~gv~e~f~~l~~~~  170 (175)
T d1ky3a_         156 AINVDTAFEEIARSA  170 (175)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999987643

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.94  E-value=4e-11  Score=96.28  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      +++|+||||||||||++.|+|.++++ |.+.+.+.+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~   39 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP   39 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC--
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchH
Confidence            58999999999999999999999987 88887765543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.92  E-value=5.3e-10  Score=88.81  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=47.2

Q ss_pred             CCcEEEEeCCCCCCch-------hhcC-C-cccccCEEEEEcCCcccccCChHHHHhHHHH-hh--cCCCCeEEEEeccC
Q 023354          193 DYIIYIIDVSGGDKIP-------RKGG-P-GITQADLLVINKTDLASAIGADLAVMERDAL-RM--RDGGPFIFAQVKHG  260 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~-------~~~~-~-~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~--~~~~~i~~isa~~g  260 (283)
                      +..++++|.+.-..+.       .... . .-..+-.|+.||.|+...  ...+.....+. ..  ....+++.+||++|
T Consensus        71 ~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  148 (165)
T d1ksha_          71 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTG  148 (165)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             hcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccc--cCHHHHHHHHHhhhhhcCCCEEEEEECCCC
Confidence            4678889976532111       1000 0 012344788899998644  22233222221 11  12346789999999


Q ss_pred             CCHHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQAW  274 (283)
Q Consensus       261 ~gi~~l~~~l~~~~  274 (283)
                      .|++++++||.+..
T Consensus       149 ~gv~e~~~~l~~~i  162 (165)
T d1ksha_         149 EDLLPGIDWLLDDI  162 (165)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999997654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.1e-10  Score=93.99  Aligned_cols=59  Identities=14%  Similarity=0.143  Sum_probs=40.5

Q ss_pred             cccCEEEEEcCCcccccCC--hHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          216 TQADLLVINKTDLASAIGA--DLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       216 ~~ad~ivi~K~g~i~~~g~--~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      .....+++||.|++.....  ..+.+.+.+....+..+++++||++|.|+++|++.|.+++
T Consensus       127 ~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         127 NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            3455788999998754211  1122223333344566889999999999999999998765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.7e-09  Score=83.18  Aligned_cols=81  Identities=17%  Similarity=0.133  Sum_probs=49.3

Q ss_pred             hcCCcEEEEeCCCCC---Cchhh-------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          191 LADYIIYIIDVSGGD---KIPRK-------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       191 l~~~~l~llDpt~g~---~l~~~-------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      -++..+++.|.+.-.   .+...       ....-..+-.+|.||.|+.....-..+...+...+  .+.+++++||++|
T Consensus        73 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~--~~~~~~e~Sak~~  150 (171)
T d2erxa1          73 KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALART--WKCAFMETSAKLN  150 (171)
T ss_dssp             HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTCEEEECBTTTT
T ss_pred             ceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHH--cCCeEEEEcCCCC
Confidence            457889999987632   11111       11111223467779999865432233333332222  3468899999999


Q ss_pred             CCHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQA  273 (283)
Q Consensus       261 ~gi~~l~~~l~~~  273 (283)
                      .|++++++.|...
T Consensus       151 ~~v~e~f~~l~~~  163 (171)
T d2erxa1         151 HNVKELFQELLNL  163 (171)
T ss_dssp             BSHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999988754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=3.9e-09  Score=84.26  Aligned_cols=80  Identities=18%  Similarity=0.092  Sum_probs=49.8

Q ss_pred             CCcEEEEeCCCCCCch---hhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKIP---RKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~---~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..|++.|.+....+.   ...     ...-..+-.++.||.|.........+.......+  .+.+.+++||++|.|++
T Consensus        79 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~--~~~~~~e~Sak~g~gv~  156 (169)
T d3raba_          79 MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVK  156 (169)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHH--cCCEEEEecCCCCcCHH
Confidence            5788999987742111   100     0011223356779999765533333444333333  24689999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          265 EIVNHILQAW  274 (283)
Q Consensus       265 ~l~~~l~~~~  274 (283)
                      +++++|.+..
T Consensus       157 e~f~~l~~~i  166 (169)
T d3raba_         157 QTFERLVDVI  166 (169)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.84  E-value=6.9e-10  Score=88.96  Aligned_cols=79  Identities=20%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             cCCcEEEEeCCCCCCchh------hcCC---cccccCEEEEEcCCcccccCChHHHHhHHHH-hhc--CCCCeEEEEecc
Q 023354          192 ADYIIYIIDVSGGDKIPR------KGGP---GITQADLLVINKTDLASAIGADLAVMERDAL-RMR--DGGPFIFAQVKH  259 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~------~~~~---~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~~--~~~~i~~isa~~  259 (283)
                      ++.+++++|.+....+..      ....   .-..+-.|+.||.|+...  ...+...+.+. ...  ...+++++||++
T Consensus        84 ~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~t  161 (176)
T d1fzqa_          84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALT  161 (176)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccc--ccHHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence            467899999776422211      0000   112344778899999865  23333333221 111  234678899999


Q ss_pred             CCCHHHHHHHHHH
Q 023354          260 GLGVEEIVNHILQ  272 (283)
Q Consensus       260 g~gi~~l~~~l~~  272 (283)
                      |.|++++++||.+
T Consensus       162 g~gv~e~~~~l~~  174 (176)
T d1fzqa_         162 GEGVQDGMNWVCK  174 (176)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999999865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1e-08  Score=82.90  Aligned_cols=100  Identities=17%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             cccCCchHHHHHHHHHHh---cCCcEEEEeCCCCCCc---hhhc---CCc--c-cccCEEEEEcCCcccccCChHHHHhH
Q 023354          174 LLCESGGDNLAANFSREL---ADYIIYIIDVSGGDKI---PRKG---GPG--I-TQADLLVINKTDLASAIGADLAVMER  241 (283)
Q Consensus       174 ~i~eSgGq~q~~~ia~al---~~~~l~llDpt~g~~l---~~~~---~~~--i-~~ad~ivi~K~g~i~~~g~~~e~~~~  241 (283)
                      .+++.+|+..--.+....   ++..|++.|++....+   ....   ...  . ...-.||.||.|+........+...+
T Consensus        67 ~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~  146 (186)
T d2f7sa1          67 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE  146 (186)
T ss_dssp             EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHH
Confidence            344566654433333332   4688999998764211   1111   100  1 12336788999986553333343333


Q ss_pred             HHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          242 DALRMRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       242 ~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      ...+  .+.+++++||++|.|+++++++|.....
T Consensus       147 ~~~~--~~~~~~e~Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         147 LADK--YGIPYFETSAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             HHHH--TTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             HHHH--cCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3333  3568999999999999999999987543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.80  E-value=1.8e-08  Score=83.55  Aligned_cols=169  Identities=17%  Similarity=0.167  Sum_probs=96.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC--hHHHH
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IREDI  155 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~--~~~~~  155 (283)
                      .++.+++++||+||||||.+-.|+..+... .+|.++..|....-..+-.+.          +-..-+++...  ...+.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~----------~a~~l~i~~~~~~~~~d~   73 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSE----------WGKRLSIPVIQGPEGTDP   73 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHH----------HHHHHTCCEECCCTTCCH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhh----------cccccCceEEeccCCccH
Confidence            457899999999999999999999877655 589999888754433222111          11111222211  11111


Q ss_pred             HHHHHHHHHccccccCCCcccCCchH--------HHHHHHHHHh--c-----CCcEEEEeCCCCCCchhhcCCc--cccc
Q 023354          156 SINLGPLEELSNLFKADLLLCESGGD--------NLAANFSREL--A-----DYIIYIIDVSGGDKIPRKGGPG--ITQA  218 (283)
Q Consensus       156 ~~~~~~l~~l~~~~~~d~~i~eSgGq--------~q~~~ia~al--~-----~~~l~llDpt~g~~l~~~~~~~--i~~a  218 (283)
                      ...............+|.+++++.|.        .+...+.+..  .     ...++++|++.+.+-.......  .--.
T Consensus        74 ~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~  153 (207)
T d1okkd2          74 AALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGL  153 (207)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCC
Confidence            11111111122334678888887662        1222232222  1     2468999998875322111111  1235


Q ss_pred             CEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          219 DLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       219 d~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      +.+++.|-|.....|........      .+.|+.+++  +|++.++
T Consensus       154 ~~lI~TKlDet~~~G~~l~~~~~------~~~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         154 TGVIVTKLDGTAKGGVLIPIVRT------LKVPIKFVG--VGEGPDD  192 (207)
T ss_dssp             SEEEEECTTSSCCCTTHHHHHHH------HCCCEEEEE--CSSSTTC
T ss_pred             ceEEEeccCCCCCccHHHHHHHH------HCCCEEEEe--CCCChHh
Confidence            79999999988777877665433      367888887  5666544

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.8e-09  Score=83.69  Aligned_cols=82  Identities=23%  Similarity=0.230  Sum_probs=51.0

Q ss_pred             cCCcEEEEeCCCCC---CchhhcCC-----cccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGD---KIPRKGGP-----GITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..+++.|.+...   .+......     .-..+-.+|.||.|+........+.......+  .+.+.+++||++|.|+
T Consensus        73 ~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~SAk~g~~v  150 (164)
T d1yzqa1          73 SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKE--LNVMFIETSAKAGYNV  150 (164)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCTTH
T ss_pred             cceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHH--cCCEEEEecCCCCcCH
Confidence            35778888987642   11111100     01233467779999875543444433333333  3567899999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      ++++++|...++
T Consensus       151 ~e~f~~i~~~l~  162 (164)
T d1yzqa1         151 KQLFRRVAAALP  162 (164)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhhC
Confidence            999999987643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.79  E-value=7.2e-09  Score=84.83  Aligned_cols=98  Identities=19%  Similarity=0.222  Sum_probs=57.1

Q ss_pred             ccCCchHHHHHHHH-H--HhcCCcEEEEeCCCCCCchh--hc---CCcccccC-EEEEEcCCcccccCChHHHHhHHHHh
Q 023354          175 LCESGGDNLAANFS-R--ELADYIIYIIDVSGGDKIPR--KG---GPGITQAD-LLVINKTDLASAIGADLAVMERDALR  245 (283)
Q Consensus       175 i~eSgGq~q~~~ia-~--al~~~~l~llDpt~g~~l~~--~~---~~~i~~ad-~ivi~K~g~i~~~g~~~e~~~~~~~~  245 (283)
                      +.++.|....+... +  ..+|..++++|+..|...+.  +.   ........ .+++||+|++.... ..+.+ ..+.+
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~-~~~~~-~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK-ALENY-RQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH-HHHHH-HHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHH-HHHHH-HHHHH
Confidence            34566665554433 2  24578899999887742211  10   00012222 56799999875421 11111 11222


Q ss_pred             hc-----CCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          246 MR-----DGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       246 ~~-----~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ..     ..+|++++||++|.|+++|++.+.+..
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            11     346899999999999999999988754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.8e-09  Score=83.29  Aligned_cols=79  Identities=18%  Similarity=0.113  Sum_probs=47.1

Q ss_pred             CCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..++++|.+....+   ....     ...-...-.++.||+|.........+........  .+.+++++||++|.|++
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~--~~~~~~~~SAktg~gV~  156 (171)
T d2ew1a1          79 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA--QDMYYLETSAKESDNVE  156 (171)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH--HTCCEEECCTTTCTTHH
T ss_pred             ceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHh--CCCEEEEEccCCCCCHH
Confidence            567888887664211   1110     0011223367779999765433333433333222  35689999999999999


Q ss_pred             HHHHHHHHH
Q 023354          265 EIVNHILQA  273 (283)
Q Consensus       265 ~l~~~l~~~  273 (283)
                      +++.+|...
T Consensus       157 e~f~~l~~~  165 (171)
T d2ew1a1         157 KLFLDLACR  165 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998876543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.78  E-value=8.5e-09  Score=82.16  Aligned_cols=56  Identities=13%  Similarity=0.072  Sum_probs=37.6

Q ss_pred             ccCEEEEEcCCcccccCChHHHHhHHHH-hh--cCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          217 QADLLVINKTDLASAIGADLAVMERDAL-RM--RDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       217 ~ad~ivi~K~g~i~~~g~~~e~~~~~~~-~~--~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      ..-.|+.||.|....  ...+....... ..  ....+++.+||++|+|++++++||.+..
T Consensus       117 ~p~iiv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         117 AGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             eEEEEEEEccccccc--CcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            345788899997654  22232332221 11  1345788999999999999999998754

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=7.1e-09  Score=82.94  Aligned_cols=80  Identities=16%  Similarity=0.069  Sum_probs=49.9

Q ss_pred             CCcEEEEeCCCCCCch---hhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKIP---RKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~---~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..++++|++....+.   ...     ...-..+-.++.||+|+........+.......  ....+++++||++|.|++
T Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~e~Sak~~~gi~  156 (174)
T d2bmea1          79 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ--ENELMFLETSALTGENVE  156 (174)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH--HTTCEEEECCTTTCTTHH
T ss_pred             CEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHH--hCCCEEEEeeCCCCcCHH
Confidence            5788999987642111   000     001123447889999976554333333333222  245788999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          265 EIVNHILQAW  274 (283)
Q Consensus       265 ~l~~~l~~~~  274 (283)
                      ++++++.+..
T Consensus       157 e~f~~l~~~i  166 (174)
T d2bmea1         157 EAFVQCARKI  166 (174)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.9e-09  Score=86.16  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             cCCcEEEEeCCCCCC---chhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDK---IPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..|++.|.+.-..   +...      ....-..+-.+|.||.|+.....-..+...+...  ..+.+++++||++|.|
T Consensus        72 ~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~--~~~~~~~e~Sak~~~~  149 (168)
T d2gjsa1          72 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV--VFDCKFIETSAALHHN  149 (168)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHH--HHTSEEEECBTTTTBS
T ss_pred             hhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHH--hcCCEEEEEeCCCCcC
Confidence            357899999876421   1111      0111123447788999986543222222222222  2356889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWE  275 (283)
Q Consensus       263 i~~l~~~l~~~~~  275 (283)
                      +++++++|.....
T Consensus       150 v~~~f~~l~~~i~  162 (168)
T d2gjsa1         150 VQALFEGVVRQIR  162 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876543

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=6.2e-09  Score=82.79  Aligned_cols=80  Identities=20%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             CCcEEEEeCCCCCCc---hhhcC-----CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKI---PRKGG-----PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l---~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..+++.|.+....+   .....     ......-.++.||.|+.....-..+...+...+  .+.+.+++||++|.|++
T Consensus        77 ~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~--~~~~~~e~Sak~~~~v~  154 (167)
T d1z08a1          77 NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES--VGAKHYHTSAKQNKGIE  154 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH--TTCEEEEEBTTTTBSHH
T ss_pred             ceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHH--cCCeEEEEecCCCcCHH
Confidence            578999998764221   11100     011223356679999876533333433333333  45789999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          265 EIVNHILQAW  274 (283)
Q Consensus       265 ~l~~~l~~~~  274 (283)
                      +++.+|.+..
T Consensus       155 e~F~~l~~~i  164 (167)
T d1z08a1         155 ELFLDLCKRM  164 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.76  E-value=1.5e-09  Score=87.06  Aligned_cols=81  Identities=19%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             cCCcEEEEeCCCCCCch---hhc----C--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcC--CCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDKIP---RKG----G--PGITQADLLVINKTDLASAIGADLAVMERDALRMRD--GGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~----~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~--~~~i~~isa~~g  260 (283)
                      ++.+++++|.+.-..+.   ...    .  ......-.|+.||.|+.... ...++.....+....  ..+++.+||++|
T Consensus        80 ~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~e~SA~tg  158 (173)
T d1e0sa_          80 TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQPSCATSG  158 (173)
T ss_dssp             CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             cceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc-cHHHHHHHHHHHHHHhCCCEEEEeeCCCC
Confidence            35789999987643211   110    0  11133447999999986542 232332221122222  345788999999


Q ss_pred             CCHHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQA  273 (283)
Q Consensus       261 ~gi~~l~~~l~~~  273 (283)
                      +|++++++||.+.
T Consensus       159 ~gv~e~~~~l~~~  171 (173)
T d1e0sa_         159 DGLYEGLTWLTSN  171 (173)
T ss_dssp             BTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHh
Confidence            9999999999753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.76  E-value=2.8e-09  Score=83.24  Aligned_cols=55  Identities=18%  Similarity=0.179  Sum_probs=35.9

Q ss_pred             cCEEEEEcCCcccccCChHHHHhHHHHhh--cCCCCeEEEEeccCCCHHHHHHHHHHH
Q 023354          218 ADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~--~~~~~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      .-.++.+|.+..... ...++........  ..+.+++++||++|.|++++++||.+.
T Consensus       103 ~i~~v~~k~d~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         103 VLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             EEEEEEECTTSTTCC-CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             eEEEEeecccccccc-cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence            346888888876552 2223322221222  234578899999999999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=9.8e-09  Score=81.52  Aligned_cols=80  Identities=19%  Similarity=0.133  Sum_probs=49.6

Q ss_pred             cCCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..+++.|.+....+   ....     ...-...-.++.||.|+........+.......+  .+.+.+++||++|.|+
T Consensus        77 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~Saktg~~v  154 (166)
T d1z0fa1          77 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE--NGLLFLEASAKTGENV  154 (166)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCTTH
T ss_pred             CcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHH--cCCEEEEEeCCCCCCH
Confidence            4678899998764211   1100     0111233467779999765543444444433333  3568999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          264 EEIVNHILQA  273 (283)
Q Consensus       264 ~~l~~~l~~~  273 (283)
                      ++++++|.+.
T Consensus       155 ~e~f~~i~~~  164 (166)
T d1z0fa1         155 EDAFLEAAKK  164 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.3e-09  Score=85.09  Aligned_cols=80  Identities=21%  Similarity=0.132  Sum_probs=49.0

Q ss_pred             cCCcEEEEeCCCCC---CchhhcCC---c-ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          192 ADYIIYIIDVSGGD---KIPRKGGP---G-ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~~~---~-i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      ++..+++.|.+...   .+......   . -...-.+|.||+|+.....-..+...+...+  .+.+++++||++|.|++
T Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~Sak~g~~v~  152 (164)
T d1z2aa1          75 AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKR--LKLRFYRTSVKEDLNVS  152 (164)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHH--HTCEEEECBTTTTBSSH
T ss_pred             CceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHH--cCCEEEEeccCCCcCHH
Confidence            45788899987642   22111100   0 0223367779999876533333433333332  24689999999999999


Q ss_pred             HHHHHHHHH
Q 023354          265 EIVNHILQA  273 (283)
Q Consensus       265 ~l~~~l~~~  273 (283)
                      +++++|.+.
T Consensus       153 e~f~~l~~~  161 (164)
T d1z2aa1         153 EVFKYLAEK  161 (164)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.8e-08  Score=80.28  Aligned_cols=83  Identities=13%  Similarity=0.104  Sum_probs=51.7

Q ss_pred             hcCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      -++..+++.|.+...   .+....      ...-..+-.+|.||+|+....-...+...+...+  .+.+.+++||++|.
T Consensus        76 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~Sak~~~  153 (171)
T d2erya1          76 TGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQ--LKVTYMEASAKIRM  153 (171)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHH--TTCEEEECBTTTTB
T ss_pred             ccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHH--cCCEEEEEcCCCCc
Confidence            357889999977632   121111      0011233467889999754432333434333333  35688999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAWE  275 (283)
Q Consensus       262 gi~~l~~~l~~~~~  275 (283)
                      |+++++..|.+...
T Consensus       154 ~i~e~f~~l~~~i~  167 (171)
T d2erya1         154 NVDQAFHELVRVIR  167 (171)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999987654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.74  E-value=2.8e-09  Score=84.60  Aligned_cols=80  Identities=19%  Similarity=0.206  Sum_probs=47.4

Q ss_pred             cCCcEEEEeCCCCCCchh---h---c--C-CcccccCEEEEEcCCcccccCChHHHHhHHHHhh--cCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDKIPR---K---G--G-PGITQADLLVINKTDLASAIGADLAVMERDALRM--RDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~---~--~-~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~--~~~~~i~~isa~~g  260 (283)
                      ++..++++|.+....+..   .   .  . ..-..+-.|+.||.|+.... ...++........  ....+++++|+++|
T Consensus        71 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g  149 (164)
T d1zd9a1          71 VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDREICCYSISCKEK  149 (164)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             cchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh-hHHHHHHHHHHHHHHhCCCEEEEEeCcCC
Confidence            357888999765322111   0   0  0 01123446888999976442 2333322211111  23457889999999


Q ss_pred             CCHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQ  272 (283)
Q Consensus       261 ~gi~~l~~~l~~  272 (283)
                      .|++++++||.+
T Consensus       150 ~gv~e~~~~l~~  161 (164)
T d1zd9a1         150 DNIDITLQWLIQ  161 (164)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            999999999876

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-08  Score=81.24  Aligned_cols=82  Identities=21%  Similarity=0.118  Sum_probs=50.7

Q ss_pred             hcCCcEEEEeCCCCCC---chhh------cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGDK---IPRK------GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~~---l~~~------~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      -++..+++.|.+.-..   +...      ....-..+-.+|.||.|+........+.......+  .+.+++++||++|.
T Consensus        74 ~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~Sak~g~  151 (167)
T d1kaoa_          74 NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE--WGCPFMETSAKSKT  151 (167)
T ss_dssp             HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTSCEEEECTTCHH
T ss_pred             cccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHH--cCCeEEEECCCCCc
Confidence            3578899999876321   1111      01111234478899999876533333333332222  34688999999999


Q ss_pred             CHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAW  274 (283)
Q Consensus       262 gi~~l~~~l~~~~  274 (283)
                      |++++++++.+..
T Consensus       152 ~i~e~f~~i~~~i  164 (167)
T d1kaoa_         152 MVDELFAEIVRQM  164 (167)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999887643

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.73  E-value=7.8e-09  Score=83.29  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=49.3

Q ss_pred             CCcEEEEeCCCCCCch-------hhcC--CcccccCEEEEEcCCcccccCChHHHHhHHHHhhc--CCCCeEEEEeccCC
Q 023354          193 DYIIYIIDVSGGDKIP-------RKGG--PGITQADLLVINKTDLASAIGADLAVMERDALRMR--DGGPFIFAQVKHGL  261 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~-------~~~~--~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~--~~~~i~~isa~~g~  261 (283)
                      +.+++++|.+....+.       ....  ..-..+-.|+.||+|+.... +..++.....+...  ...+++++||++|+
T Consensus        86 ~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~  164 (182)
T d1moza_          86 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-SASEVSKELNLVELKDRSWSIVASSAIKGE  164 (182)
T ss_dssp             EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-CHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred             eeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc-CHHHHHHHHHHHHHhhCCCEEEEEECCCCC
Confidence            4788899976643221       1000  01123447888999986442 22232222111111  23468899999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAWEA  276 (283)
Q Consensus       262 gi~~l~~~l~~~~~~  276 (283)
                      |++++++||.+...+
T Consensus       165 gv~e~~~~l~~~i~~  179 (182)
T d1moza_         165 GITEGLDWLIDVIKE  179 (182)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999887654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=6.6e-09  Score=82.63  Aligned_cols=80  Identities=14%  Similarity=0.044  Sum_probs=49.7

Q ss_pred             CCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..|++.|.+....+   ....     ...-...-.+|.||+|+........+...+...+  .+.+++++||++|.|++
T Consensus        78 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~SAk~~~nV~  155 (167)
T d1z0ja1          78 AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS--IHAIFVETSAKNAININ  155 (167)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCEEEECBTTTTBSHH
T ss_pred             cceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHH--cCCEEEEEecCCCCCHH
Confidence            577888897653211   1000     0011234478899999875533333433333332  45688999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          265 EIVNHILQAW  274 (283)
Q Consensus       265 ~l~~~l~~~~  274 (283)
                      +++.+|.+..
T Consensus       156 e~f~~l~~~i  165 (167)
T d1z0ja1         156 ELFIEISRRI  165 (167)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999887653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=3e-08  Score=82.42  Aligned_cols=167  Identities=19%  Similarity=0.200  Sum_probs=93.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC--hHHHHHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IREDISI  157 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~--~~~~~~~  157 (283)
                      ..+++++||+||||||.+-.|+-.++.. .+|.++..|....-..+-.+.          +-..-+.+...  ..++...
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~----------~a~~l~v~~~~~~~~~d~~~   78 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV----------WGQRNNIPVIAQHTGADSAS   78 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHH----------HHHHTTCCEECCSTTCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhh----------hhhhcCCcccccccCCCHHH
Confidence            4588999999999999999999877655 589988887653211111111          11112222211  1112222


Q ss_pred             HHHHHHHccccccCCCcccCCchH--------HHHHHHHHHhc-------CCcEEEEeCCCCCCchhhcCCcc--cccCE
Q 023354          158 NLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-------DYIIYIIDVSGGDKIPRKGGPGI--TQADL  220 (283)
Q Consensus       158 ~~~~l~~l~~~~~~d~~i~eSgGq--------~q~~~ia~al~-------~~~l~llDpt~g~~l~~~~~~~i--~~ad~  220 (283)
                      +............+|.+++++.|.        .+...+...+-       ...++++|++.+.+-.......+  --.+.
T Consensus        79 ~l~~~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~  158 (211)
T d2qy9a2          79 VIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTG  158 (211)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCE
T ss_pred             HHHHHHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCce
Confidence            222222222345678899997772        11122222221       25789999888743211110011  13579


Q ss_pred             EEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       221 ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      +++.|-|.....|........      .+.|+.+++  .|+++++
T Consensus       159 lIlTKlDe~~~~G~~l~~~~~------~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         159 ITLTKLDGTAKGGVIFSVADQ------FGIPIRYIG--VGERIED  195 (211)
T ss_dssp             EEEECCTTCTTTTHHHHHHHH------HCCCEEEEE--CSSSGGG
T ss_pred             EEEeecCCCCCccHHHHHHHH------HCCCEEEEe--CCCCccc
Confidence            999999987766655444332      367888887  7887754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=8.9e-09  Score=85.82  Aligned_cols=168  Identities=20%  Similarity=0.189  Sum_probs=93.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCC--ChHHHHHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHA--AIREDISI  157 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~--~~~~~~~~  157 (283)
                      ..+++++||+|+||||.+-.|+-.+... .+|.++..|....-..+..+.          +-..-+++..  ...++...
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~----------~a~~l~i~~~~~~~~~d~~~   80 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKI----------WGERVGATVISHSEGADPAA   80 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHH----------HHHHHTCEEECCSTTCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHH----------HhhhcCccccccCCCCcHHH
Confidence            5588999999999999999999877644 689999988653221111111          1111122111  11112222


Q ss_pred             HHHHHHHccccccCCCcccCCchH--------HHHHHHHHHhc-------CCcEEEEeCCCCCCchhhcCC--cccccCE
Q 023354          158 NLGPLEELSNLFKADLLLCESGGD--------NLAANFSRELA-------DYIIYIIDVSGGDKIPRKGGP--GITQADL  220 (283)
Q Consensus       158 ~~~~l~~l~~~~~~d~~i~eSgGq--------~q~~~ia~al~-------~~~l~llDpt~g~~l~~~~~~--~i~~ad~  220 (283)
                      +......+.....+|.+++++.|.        .+...+.....       +..++++|++.+.+-..+...  ..--.+.
T Consensus        81 ~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~  160 (213)
T d1vmaa2          81 VAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTG  160 (213)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCE
T ss_pred             HHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccccCCce
Confidence            223333333445778888886662        12222332221       246889998776321111000  1123579


Q ss_pred             EEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354          221 LVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       221 ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l  266 (283)
                      +|+.|-|.....|........      .+.|+.+++  +|+++++|
T Consensus       161 lI~TKlDe~~~~G~~l~~~~~------~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         161 IILTKLDGTAKGGITLAIARE------LGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             EEEECGGGCSCTTHHHHHHHH------HCCCEEEEE--CSSSGGGE
T ss_pred             EEEecccCCCcccHHHHHHHH------HCCCEEEEe--CCCCcccC
Confidence            999999987666655443322      357888887  68877653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.3e-08  Score=79.99  Aligned_cols=82  Identities=16%  Similarity=0.094  Sum_probs=50.4

Q ss_pred             CCcEEEEeCCCCCCc---hhh---c---CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          193 DYIIYIIDVSGGDKI---PRK---G---GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       193 ~~~l~llDpt~g~~l---~~~---~---~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      +..|++.|++....+   ...   .   ...-..+-.||.||+|+.....-..+...+...  ..+.+.+++||++|.|+
T Consensus        79 ~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~--~~~~~~~e~Sak~g~~i  156 (172)
T d2g3ya1          79 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV--VFDCKFIETSAAVQHNV  156 (172)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH--HHTCEEEECBTTTTBSH
T ss_pred             ceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHH--HcCCeEEEEeCCCCcCH
Confidence            578888898764211   111   0   001123457899999976543222333222222  23568899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      +++++.|......
T Consensus       157 ~~~f~~l~~~i~~  169 (172)
T d2g3ya1         157 KELFEGIVRQVRL  169 (172)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998876543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.68  E-value=3e-08  Score=78.97  Aligned_cols=81  Identities=12%  Similarity=0.124  Sum_probs=49.3

Q ss_pred             cCCcEEEEeCCCCCCc---hhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..+++.|.+....+   ....      ...-...-.+|.||+|+.....-..+........  .+.+++++||++|.|
T Consensus        76 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~Sak~g~g  153 (168)
T d1u8za_          76 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ--WNVNYVETSAKTRAN  153 (168)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTCEEEECCTTTCTT
T ss_pred             cceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHH--cCCeEEEEcCCCCcC
Confidence            4678899998764211   1110      0011233468889999754322233333333333  246789999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAW  274 (283)
Q Consensus       263 i~~l~~~l~~~~  274 (283)
                      +++++++|.+..
T Consensus       154 v~e~f~~l~~~i  165 (168)
T d1u8za_         154 VDKVFFDLMREI  165 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887544

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.7e-08  Score=80.71  Aligned_cols=83  Identities=16%  Similarity=0.097  Sum_probs=52.5

Q ss_pred             cCCcEEEEeCCCCCCc---hhhcC------CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKI---PRKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l---~~~~~------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..+++.|.+....+   .....      ..-...-.+|.||+|+....-...+.......+  .+.+.+++||++|.|
T Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~Sak~g~g  155 (173)
T d2fn4a1          78 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS--HHVAYFEASAKLRLN  155 (173)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH--TTCEEEECBTTTTBS
T ss_pred             ceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHh--cCCEEEEEeCCCCcC
Confidence            5788999998764211   11100      001223478889999865433333433333333  357889999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 023354          263 VEEIVNHILQAWEA  276 (283)
Q Consensus       263 i~~l~~~l~~~~~~  276 (283)
                      ++++++.|.+....
T Consensus       156 v~e~f~~l~~~i~k  169 (173)
T d2fn4a1         156 VDEAFEQLVRAVRK  169 (173)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999876643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=9.6e-09  Score=82.36  Aligned_cols=79  Identities=20%  Similarity=0.194  Sum_probs=49.2

Q ss_pred             cCCcEEEEeCCCCC---Cchh-------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          192 ADYIIYIIDVSGGD---KIPR-------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~-------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      ++..|++.|.+...   ....       ....  ...-.+|.||.|+........+....  .......+++++||++|.
T Consensus        77 ~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~--~~piilvgnK~Dl~~~~~~~~~~~~~--~~~~~~~~~~e~Sa~~g~  152 (175)
T d2f9la1          77 AVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDEARA--FAEKNNLSFIETSALDST  152 (175)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHHHHH--HHHHTTCEEEECCTTTCT
T ss_pred             cCeEEEEEECCCcccchhHHHHHHHHHHhcCC--CCcEEEEEeeecccccccchHHHHHH--hhcccCceEEEEecCCCc
Confidence            35778889977642   1111       1111  12346677999987654344333222  222356788999999999


Q ss_pred             CHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAW  274 (283)
Q Consensus       262 gi~~l~~~l~~~~  274 (283)
                      |++++++++....
T Consensus       153 ~i~e~f~~l~~~i  165 (175)
T d2f9la1         153 NVEEAFKNILTEI  165 (175)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999998876653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.65  E-value=3.8e-09  Score=87.34  Aligned_cols=99  Identities=15%  Similarity=0.162  Sum_probs=57.4

Q ss_pred             ccCCchHHHHHHH-HHH--hcCCcEEEEeCCCCC-Cchhh-cC---CcccccC-EEEEEcCCcccccCChHHHHhHHHH-
Q 023354          175 LCESGGDNLAANF-SRE--LADYIIYIIDVSGGD-KIPRK-GG---PGITQAD-LLVINKTDLASAIGADLAVMERDAL-  244 (283)
Q Consensus       175 i~eSgGq~q~~~i-a~a--l~~~~l~llDpt~g~-~l~~~-~~---~~i~~ad-~ivi~K~g~i~~~g~~~e~~~~~~~-  244 (283)
                      +.++.|....+.- .++  .+|..|+++|+..|. ..+.+ ..   ..+.... .|++||+|++...  ........+. 
T Consensus        90 iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~--~~~~~~~~~~~  167 (205)
T d2qn6a3          90 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE--EALSQYRQIKQ  167 (205)
T ss_dssp             EEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred             EeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccch--HHHHHHHHHHH
Confidence            4457776544322 222  347889999988874 22211 00   0012222 5669999997652  1111111111 


Q ss_pred             --hh--cCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          245 --RM--RDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       245 --~~--~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                        ..  ....|++++||++|.|+++|++.|..+.+
T Consensus       168 ~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         168 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence              11  12578999999999999999999887643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.9e-08  Score=78.26  Aligned_cols=55  Identities=16%  Similarity=0.044  Sum_probs=35.2

Q ss_pred             cccCEEEEEcCCcccccCChHHHHhHHHHh----------hcCCCCeEEEEeccCCCHHHHHHHHHH
Q 023354          216 TQADLLVINKTDLASAIGADLAVMERDALR----------MRDGGPFIFAQVKHGLGVEEIVNHILQ  272 (283)
Q Consensus       216 ~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~----------~~~~~~i~~isa~~g~gi~~l~~~l~~  272 (283)
                      .....++.+|.|+....  ....+.+.+..          .....+++++||++|+|++++++||.+
T Consensus       101 ~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         101 DVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            34457888999986542  22222222110          111335789999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.63  E-value=6.1e-09  Score=81.75  Aligned_cols=56  Identities=14%  Similarity=0.240  Sum_probs=38.5

Q ss_pred             CEEEEEcCCcccccCChHHHHhHHHHh--hcCCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          219 DLLVINKTDLASAIGADLAVMERDALR--MRDGGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       219 d~ivi~K~g~i~~~g~~~e~~~~~~~~--~~~~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      -.++.||.|+.... ...++.......  .....+++++||++|+|+++++++|.+...
T Consensus       109 i~iv~nk~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~  166 (169)
T d1upta_         109 LVVFANKQDMEQAM-TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK  166 (169)
T ss_dssp             EEEEEECTTSTTCC-CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeeccccccc-cHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            36888999987653 233333222211  224568899999999999999999987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.6e-08  Score=79.30  Aligned_cols=80  Identities=21%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             cCCcEEEEeCCCCCCch---hhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIP---RKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..+++.|.++...+.   ...     ...-...-.++.||+|+.....-..+........  ...+++++||++|.|+
T Consensus        79 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~--~~~~~~e~SAk~g~~V  156 (170)
T d1r2qa_          79 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD--NSLLFMETSAKTSMNV  156 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH--TTCEEEECCTTTCTTH
T ss_pred             cceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHh--cCCEEEEeeCCCCCCH
Confidence            35678888987642211   100     0001233477889999865533344444333322  4568999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          264 EEIVNHILQA  273 (283)
Q Consensus       264 ~~l~~~l~~~  273 (283)
                      ++++++|.+.
T Consensus       157 ~e~f~~l~~~  166 (170)
T d1r2qa_         157 NEIFMAIAKK  166 (170)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999988653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.2e-07  Score=75.06  Aligned_cols=81  Identities=20%  Similarity=0.183  Sum_probs=50.7

Q ss_pred             hcCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      -++..+++.|.+...   .+....      ...-...-.++.||+|+....-. .+........  .+.+++++||++|.
T Consensus        74 ~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~--~~~~~~e~Sak~g~  150 (166)
T d1ctqa_          74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVE-SRQAQDLARS--YGIPYIETSAKTRQ  150 (166)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSC-HHHHHHHHHH--HTCCEEECCTTTCT
T ss_pred             cccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccccccc-HHHHHHHHHH--hCCeEEEEcCCCCc
Confidence            456788999987642   111111      00112345889999997654322 3333333332  35689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAW  274 (283)
Q Consensus       262 gi~~l~~~l~~~~  274 (283)
                      |++++++++.+..
T Consensus       151 gi~e~f~~i~~~i  163 (166)
T d1ctqa_         151 GVEDAFYTLVREI  163 (166)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999997654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.60  E-value=1.2e-08  Score=84.90  Aligned_cols=167  Identities=21%  Similarity=0.301  Sum_probs=88.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC--hHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IREDIS  156 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~--~~~~~~  156 (283)
                      +..+++++||+||||||++-.|+-.++.. .+|.++..|.......+..+.          +-..-+++...  ...+..
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~----------~a~~l~v~~~~~~~~~~~~   80 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ----------LGQQIGVPVYGEPGEKDVV   80 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHH----------HHHHHTCCEECCTTCCCHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHH----------hccccCcceeecccchhhh
Confidence            35688999999999999999999877655 689999988654222111111          11111222211  111111


Q ss_pred             -HHHHHHHHccccccCCCcccCCchH-------HHHHHH---HHHhc-CCcEEEEeCCCCCCchhhcCCcc--cccCEEE
Q 023354          157 -INLGPLEELSNLFKADLLLCESGGD-------NLAANF---SRELA-DYIIYIIDVSGGDKIPRKGGPGI--TQADLLV  222 (283)
Q Consensus       157 -~~~~~l~~l~~~~~~d~~i~eSgGq-------~q~~~i---a~al~-~~~l~llDpt~g~~l~~~~~~~i--~~ad~iv  222 (283)
                       ...+++... ....+|.+++++.|.       .+...+   ..++. +.+++++|++.+.+........+  .-.+.++
T Consensus        81 ~~~~~a~~~~-~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI  159 (211)
T d1j8yf2          81 GIAKRGVEKF-LSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTII  159 (211)
T ss_dssp             HHHHHHHHHH-HHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEE
T ss_pred             HHHHHHHHHh-hccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccCcceEE
Confidence             112223222 234678888876652       111112   22222 35789999887754322111111  1236799


Q ss_pred             EEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          223 INKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       223 i~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      ++|-|.....|.......      ..+.|+.+++  .|+++++
T Consensus       160 ~TKlDet~~~G~~l~~~~------~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         160 ITKMDGTAKGGGALSAVA------ATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             EECTTSCSCHHHHHHHHH------TTTCCEEEEE--CSSSTTC
T ss_pred             EecccCCCcccHHHHHHH------HHCcCEEEEe--CCCCccc
Confidence            999998766554433322      2467888887  6887754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=1.3e-08  Score=80.73  Aligned_cols=82  Identities=26%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             cCCcEEEEeCCCCC---Cchhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGD---KIPRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..++++|.+...   .+....     .........++.+|.+..... ...+...+...+  .+.+++++|+++|.|+
T Consensus        75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v  151 (166)
T d1g16a_          75 AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKE--LGIPFIESSAKNDDNV  151 (166)
T ss_dssp             EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHHHHHHHHHH--HTCCEEECBTTTTBSH
T ss_pred             CCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhh-hhHHHHHHHHHh--cCCeEEEECCCCCCCH
Confidence            35789999987642   111110     011123346677777765443 344444443333  3579999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWEA  276 (283)
Q Consensus       264 ~~l~~~l~~~~~~  276 (283)
                      ++++++|.+...+
T Consensus       152 ~e~f~~l~~~i~~  164 (166)
T d1g16a_         152 NEIFFTLAKLIQE  164 (166)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.3e-08  Score=81.42  Aligned_cols=81  Identities=20%  Similarity=0.127  Sum_probs=49.5

Q ss_pred             cCCcEEEEeCCCCC---Cchhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGD---KIPRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|++.|.+.-.   .+....     ...-..+-.++.||+|.....-...+........  .+.+++++||++|.|+
T Consensus        76 ~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~--~~~~~~e~Sa~tg~~V  153 (173)
T d2a5ja1          76 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE--HGLIFMETSAKTACNV  153 (173)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEEECTTTCTTH
T ss_pred             cCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHH--cCCEEEEecCCCCCCH
Confidence            35788889976631   111110     0011234467889999765433333333333322  3568999999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          264 EEIVNHILQAW  274 (283)
Q Consensus       264 ~~l~~~l~~~~  274 (283)
                      ++++.++.+..
T Consensus       154 ~e~f~~i~~~i  164 (173)
T d2a5ja1         154 EEAFINTAKEI  164 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4e-08  Score=77.92  Aligned_cols=83  Identities=14%  Similarity=0.106  Sum_probs=53.0

Q ss_pred             hcCCcEEEEeCCCCC---CchhhcC------CcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC
Q 023354          191 LADYIIYIIDVSGGD---KIPRKGG------PGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL  261 (283)
Q Consensus       191 l~~~~l~llDpt~g~---~l~~~~~------~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~  261 (283)
                      -++..|++.|.+...   .+.....      ..-..+-.+|.||+|+....-...+.... ..+...+.+.+++||++|.
T Consensus        74 ~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~e~Sak~g~  152 (167)
T d1c1ya_          74 NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN-LARQWCNCAFLESSAKSKI  152 (167)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHHHTTSCEEEECBTTTTB
T ss_pred             ccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHH-HHHHhCCCEEEEEcCCCCc
Confidence            357888999987642   2221110      01123347899999987664344443333 3334456788999999999


Q ss_pred             CHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAW  274 (283)
Q Consensus       262 gi~~l~~~l~~~~  274 (283)
                      |+++++++|....
T Consensus       153 gv~e~F~~l~~~i  165 (167)
T d1c1ya_         153 NVNEIFYDLVRQI  165 (167)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999887643

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.7e-08  Score=80.54  Aligned_cols=78  Identities=13%  Similarity=0.063  Sum_probs=49.2

Q ss_pred             CCcEEEEeCCCCC---CchhhcCCc----ccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHH
Q 023354          193 DYIIYIIDVSGGD---KIPRKGGPG----ITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEE  265 (283)
Q Consensus       193 ~~~l~llDpt~g~---~l~~~~~~~----i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~  265 (283)
                      +..+++.|.+...   .+.......    -...-.+|.||.|+....- ..+   ........+.+.+++||++|.|+++
T Consensus        77 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~-~~~---~~~~~~~~~~~~~e~Sak~~~~v~e  152 (170)
T d1i2ma_          77 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAK---SIVFHRKKNLQYYDISAKSNYNFEK  152 (170)
T ss_dssp             CEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCC-TTT---SHHHHSSCSSEEEEEBTTTTBTTTH
T ss_pred             cchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhh-hhH---HHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            5789999987642   222111000    1234488999999765421 111   1122233567889999999999999


Q ss_pred             HHHHHHHHH
Q 023354          266 IVNHILQAW  274 (283)
Q Consensus       266 l~~~l~~~~  274 (283)
                      ++++|.+..
T Consensus       153 ~f~~l~~~l  161 (170)
T d1i2ma_         153 PFLWLARKL  161 (170)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=2.6e-08  Score=81.17  Aligned_cols=82  Identities=22%  Similarity=0.171  Sum_probs=51.2

Q ss_pred             cCCcEEEEeCCCCCCchh---h-----cCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          192 ADYIIYIIDVSGGDKIPR---K-----GGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~~---~-----~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      ++..|+++|++....+..   .     ........-.++.||.|.........+......  .....+.+++||++|.|+
T Consensus        79 a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~e~SAk~g~gi  156 (194)
T d2bcgy1          79 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFA--DANKMPFLETSALDSTNV  156 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH--HHTTCCEEECCTTTCTTH
T ss_pred             CCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhh--hccCcceEEEecCcCccH
Confidence            357889999886421110   0     001112344788999988765433444333322  234577899999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      +++++++.....
T Consensus       157 ~e~f~~l~~~i~  168 (194)
T d2bcgy1         157 EDAFLTMARQIK  168 (194)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999876543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=7.3e-08  Score=76.70  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=50.2

Q ss_pred             cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCC-
Q 023354          192 ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGL-  261 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~-  261 (283)
                      ++..+++.|.+...   .+....      ......+-.++.||+|+....--..+...+...+.  +.+.+++||+++. 
T Consensus        76 ~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~--~~~~~e~Sak~~~~  153 (169)
T d1x1ra1          76 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKY--NIPYIETSAKDPPL  153 (169)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHH--TCCEEEEBCSSSCB
T ss_pred             ccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHc--CCEEEEEcCCCCCc
Confidence            57889999987632   221111      01112334788999997654322334444433333  4689999999875 


Q ss_pred             CHHHHHHHHHHHH
Q 023354          262 GVEEIVNHILQAW  274 (283)
Q Consensus       262 gi~~l~~~l~~~~  274 (283)
                      ||++++..|.+..
T Consensus       154 nV~~~F~~l~~~i  166 (169)
T d1x1ra1         154 NVDKTFHDLVRVI  166 (169)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999887654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=7.5e-08  Score=76.52  Aligned_cols=80  Identities=23%  Similarity=0.150  Sum_probs=50.0

Q ss_pred             CCcEEEEeCCCCCCc---hhhc-----CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDKI---PRKG-----GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~l---~~~~-----~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..++++|.+....+   ....     ......+-.++.||.|.........+........  .+.+++++||++|.|++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~--~~~~~~e~Sak~g~gi~  158 (170)
T d2g6ba1          81 HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKE--YGLPFMETSAKTGLNVD  158 (170)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH--HTCCEEECCTTTCTTHH
T ss_pred             ceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHH--cCCEEEEEeCCCCcCHH
Confidence            578888998764211   1100     0011234467779988776543344444333333  24689999999999999


Q ss_pred             HHHHHHHHHH
Q 023354          265 EIVNHILQAW  274 (283)
Q Consensus       265 ~l~~~l~~~~  274 (283)
                      +++++|.+..
T Consensus       159 e~f~~l~~~i  168 (170)
T d2g6ba1         159 LAFTAIAKEL  168 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999987654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.2e-08  Score=76.99  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             cCCcEEEEeCCCCC---Cchh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGD---KIPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..+++.|.++-.   .+..      .....-...-.+|.||.|+....--..+...+...+  .+.+.+++||++|.|
T Consensus        73 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~--~~~~~~e~Saktg~g  150 (168)
T d2atva1          73 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE--LACAFYECSACTGEG  150 (168)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH--HTSEEEECCTTTCTT
T ss_pred             cccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHH--hCCeEEEEccccCCc
Confidence            56789999987632   1111      111111334588999999865422233333333333  246789999999985


Q ss_pred             -HHHHHHHHHHHHH
Q 023354          263 -VEEIVNHILQAWE  275 (283)
Q Consensus       263 -i~~l~~~l~~~~~  275 (283)
                       +++++..|.+...
T Consensus       151 nV~e~F~~l~~~i~  164 (168)
T d2atva1         151 NITEIFYELCREVR  164 (168)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence             9999988876543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.1e-08  Score=76.30  Aligned_cols=55  Identities=13%  Similarity=0.084  Sum_probs=37.7

Q ss_pred             cCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      .-.+|.||.|+....- ..+...+. .+.....+++++||++|.|+++++++|.+..
T Consensus       117 piilVgnK~Dl~~~~v-~~~~~~~~-~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         117 PFVILGNKIDISERQV-STEEAQAW-CRDNGDYPYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             CEEEEEECTTCSSCSS-CHHHHHHH-HHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEeccccchhhccC-cHHHHHHH-HHHcCCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            4488999999754322 22333333 3334457899999999999999998886543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=3.5e-08  Score=79.54  Aligned_cols=55  Identities=16%  Similarity=0.161  Sum_probs=38.1

Q ss_pred             cCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHHHHH
Q 023354          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      +-.+|.||+|+.... ...+... .......+.+++++||++|.|+++++++|.+..
T Consensus       113 p~ilv~nK~Dl~~~~-~~~~~~~-~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         113 PFVVLGNKIDLENRQ-VATKRAQ-AWCYSKNNIPYFETSAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             CEEEEEECTTSSCCC-SCHHHHH-HHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CEEEEEEeecccccc-hhHHHHH-HHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            448888999975432 2222222 233344578899999999999999999986543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.9e-08  Score=80.59  Aligned_cols=79  Identities=22%  Similarity=0.182  Sum_probs=46.7

Q ss_pred             CCcEEEEeCCCCCCch---h-------hcCCcccccCEEEEEcCCcccccCC------------hHHHHhHHHHhhcCCC
Q 023354          193 DYIIYIIDVSGGDKIP---R-------KGGPGITQADLLVINKTDLASAIGA------------DLAVMERDALRMRDGG  250 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~---~-------~~~~~i~~ad~ivi~K~g~i~~~g~------------~~e~~~~~~~~~~~~~  250 (283)
                      +..+++.|.+....+.   .       ....  ..+-.|+.||.|+......            ..+.. ..+.+.....
T Consensus        75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~--~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~-~~~a~~~~~~  151 (177)
T d1kmqa_          75 DVILMCFSIDSPDSLENIPEKWTPEVKHFCP--NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEG-RDMANRIGAF  151 (177)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHH-HHHHHHTTCS
T ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHhCC--CCceEEeeecccccchhhHHHHHHHhhcccccHHHH-HHHHHHcCCc
Confidence            5788899987642111   1       1111  2334677899998643110            11111 1222333445


Q ss_pred             CeEEEEeccCCCHHHHHHHHHHHH
Q 023354          251 PFIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       251 ~i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      +.+++||++|.|++++++.+.+..
T Consensus       152 ~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         152 GYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHH
Confidence            788999999999999999887653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=2e-08  Score=80.22  Aligned_cols=82  Identities=18%  Similarity=0.155  Sum_probs=47.6

Q ss_pred             CCcEEEEeCCCCCC---chhh---c--CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          193 DYIIYIIDVSGGDK---IPRK---G--GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~~~---~--~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      +..|+++|.+....   +...   .  ......+-.++.||.|.........+........  .+.+++.+|+++|.|++
T Consensus        80 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~g~gv~  157 (173)
T d2fu5c1          80 MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALD--YGIKFMETSAKANINVE  157 (173)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH--HTCEEEECCC---CCHH
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHh--cCCEEEEEeCCCCCCHH
Confidence            57888999776321   1110   0  0111344578889999887644444433333322  35788999999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          265 EIVNHILQAWEA  276 (283)
Q Consensus       265 ~l~~~l~~~~~~  276 (283)
                      +++++|.+....
T Consensus       158 e~f~~l~~~i~~  169 (173)
T d2fu5c1         158 NAFFTLARDIKA  169 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999876543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.53  E-value=6.5e-09  Score=82.89  Aligned_cols=29  Identities=21%  Similarity=0.142  Sum_probs=24.7

Q ss_pred             cccCCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           76 NFNERAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        76 ~~~~~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .|.++..+|+|+|++|||||||++.|++-
T Consensus         8 ~~~~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           8 GLYKKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34456678999999999999999999874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.9e-08  Score=78.81  Aligned_cols=80  Identities=21%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             CCcEEEEeCCCCCC---chh------hcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCH
Q 023354          193 DYIIYIIDVSGGDK---IPR------KGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGV  263 (283)
Q Consensus       193 ~~~l~llDpt~g~~---l~~------~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi  263 (283)
                      +..++++|.+....   ...      +.......+-.++.||.+..... ...+...+...+  .+.+++.+||++|.|+
T Consensus        81 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-v~~~~~~~~~~~--~~~~~~e~Sa~tg~gv  157 (177)
T d1x3sa1          81 QGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRNEGLKFARK--HSMLFIEASAKTCDGV  157 (177)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHHHHHHHHHH--TTCEEEECCTTTCTTH
T ss_pred             CEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccccc-ccHHHHHHHHHH--CCCEEEEEeCCCCCCH
Confidence            57888999765321   111      01111233447888998865432 222333333332  3568899999999999


Q ss_pred             HHHHHHHHHHHH
Q 023354          264 EEIVNHILQAWE  275 (283)
Q Consensus       264 ~~l~~~l~~~~~  275 (283)
                      +++++++.+...
T Consensus       158 ~e~f~~l~~~l~  169 (177)
T d1x3sa1         158 QCAFEELVEKII  169 (177)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999998876543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.51  E-value=5.3e-08  Score=80.73  Aligned_cols=167  Identities=24%  Similarity=0.200  Sum_probs=85.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCCCCHHHHHHhccccCCchHHHHHhCCCCCCC--hHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAA--IREDIS  156 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~~~~~~~~~~ig~v~q~~~~~i~~~g~~~~~--~~~~~~  156 (283)
                      +..++.++||+|+||||.+..|+-.+... .++.++..|....-..+..+.          +-..-+.+...  ..++..
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~----------~a~~l~v~~~~~~~~~~~~   78 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL----------LGEKVGVPVLEVMDGESPE   78 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHH----------HHHHHTCCEEECCTTCCHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHH----------HHHhcCCccccccccchhh
Confidence            45688999999999999999999877655 588888887653211111111          11111222111  111122


Q ss_pred             HHHHHHHHccccccCCCcccCCchH-----HHH---HHHHHHhc-CCcEEEEeCCCCCCchhhcCCcc--cccCEEEEEc
Q 023354          157 INLGPLEELSNLFKADLLLCESGGD-----NLA---ANFSRELA-DYIIYIIDVSGGDKIPRKGGPGI--TQADLLVINK  225 (283)
Q Consensus       157 ~~~~~l~~l~~~~~~d~~i~eSgGq-----~q~---~~ia~al~-~~~l~llDpt~g~~l~~~~~~~i--~~ad~ivi~K  225 (283)
                      .+......+.....+|.+++++.|.     .+.   ..+..... +..++++|++.+.+-........  --.+.+++.|
T Consensus        79 ~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~~I~TK  158 (207)
T d1ls1a2          79 SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTK  158 (207)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred             HHHHHHHHHHhhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCCCeeEEee
Confidence            2222222333445677788776662     122   22322222 36788888887743221111000  1257899999


Q ss_pred             CCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHH
Q 023354          226 TDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVE  264 (283)
Q Consensus       226 ~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~  264 (283)
                      .|.....|.......      ..+.|+.+++  .|+..+
T Consensus       159 lDe~~~~G~~l~~~~------~~~~Pi~~i~--~Gq~pe  189 (207)
T d1ls1a2         159 LDGDARGGAALSARH------VTGKPIYFAG--VSEKPE  189 (207)
T ss_dssp             GGGCSSCHHHHHHHH------HHCCCEEEEC--------
T ss_pred             cCccccchHHHHHHH------HHCCCEEEEe--CCCChh
Confidence            997655444333222      1356887765  344443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=8.7e-08  Score=77.37  Aligned_cols=78  Identities=12%  Similarity=0.119  Sum_probs=45.9

Q ss_pred             CCcEEEEeCCCCCCchh----------hcCCcccccCEEEEEcCCccccc------------CChHHHHhHHHHhhcCCC
Q 023354          193 DYIIYIIDVSGGDKIPR----------KGGPGITQADLLVINKTDLASAI------------GADLAVMERDALRMRDGG  250 (283)
Q Consensus       193 ~~~l~llDpt~g~~l~~----------~~~~~i~~ad~ivi~K~g~i~~~------------g~~~e~~~~~~~~~~~~~  250 (283)
                      +..++++|.+.-..+..          ....  ...-.+|.||.|+....            --..+...+ +.+.....
T Consensus        82 ~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~--~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~-~a~~~~~~  158 (185)
T d2atxa1          82 DVFLICFSVVNPASFQNVKEEWVPELKEYAP--NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK-LAKEIGAC  158 (185)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH-HHHHHTCS
T ss_pred             ceeeeccccchHHHHHHHHHHHHHHHHhcCC--CCCeeEeeeccccccchhhhhhhhhcccccccHHHHHH-HHHHcCCC
Confidence            57899999876321111          1111  22347888999976421            001111111 22233446


Q ss_pred             CeEEEEeccCCCHHHHHHHHHHH
Q 023354          251 PFIFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       251 ~i~~isa~~g~gi~~l~~~l~~~  273 (283)
                      +.+++||++|.|++++++.+...
T Consensus       159 ~~~E~SAk~~~gv~e~F~~li~~  181 (185)
T d2atxa1         159 CYVECSALTQKGLKTVFDEAIIA  181 (185)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHH
Confidence            78899999999999999887654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4e-08  Score=77.87  Aligned_cols=80  Identities=15%  Similarity=0.046  Sum_probs=48.6

Q ss_pred             cCCcEEEEeCCCCCCch---hhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCC
Q 023354          192 ADYIIYIIDVSGGDKIP---RKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLG  262 (283)
Q Consensus       192 ~~~~l~llDpt~g~~l~---~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~g  262 (283)
                      ++..+++.|.+....+.   ...      ......+-.++.||.|+.....-+.+...+...+  .+.+.+++||++|.|
T Consensus        76 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~--~~~~~~e~Sak~~~~  153 (167)
T d1xtqa1          76 INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES--WNAAFLESSAKENQT  153 (167)
T ss_dssp             CCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH--HTCEEEECCTTCHHH
T ss_pred             hhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHH--cCCEEEEEecCCCCC
Confidence            35678888987642111   100      0011234478999999865433233333333222  346788999999999


Q ss_pred             HHHHHHHHHHH
Q 023354          263 VEEIVNHILQA  273 (283)
Q Consensus       263 i~~l~~~l~~~  273 (283)
                      ++++++.|...
T Consensus       154 v~~~f~~li~~  164 (167)
T d1xtqa1         154 AVDVFRRIILE  164 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=3.2e-07  Score=72.14  Aligned_cols=77  Identities=22%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             cCCcEEEEeCCCCC---Cchhhc------CCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccC--
Q 023354          192 ADYIIYIIDVSGGD---KIPRKG------GPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHG--  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~------~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g--  260 (283)
                      ++..+++.|.++..   .+....      ...-...-.||.||.|+.....-..+...+...+  .+.+++++||+++  
T Consensus        76 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~SAkt~~~  153 (165)
T d1z06a1          76 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADT--HSMPLFETSAKNPND  153 (165)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH--TTCCEEECCSSSGGG
T ss_pred             CCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHH--CCCEEEEEecccCCc
Confidence            46889999977632   222111      0111234478899999876533344444433332  3568999999875  


Q ss_pred             -CCHHHHHHHH
Q 023354          261 -LGVEEIVNHI  270 (283)
Q Consensus       261 -~gi~~l~~~l  270 (283)
                       .|+++++.+|
T Consensus       154 ~~~V~e~F~~l  164 (165)
T d1z06a1         154 NDHVEAIFMTL  164 (165)
T ss_dssp             GSCHHHHHHHH
T ss_pred             CcCHHHHHHHh
Confidence             4888888776

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=1.3e-07  Score=75.07  Aligned_cols=79  Identities=22%  Similarity=0.113  Sum_probs=47.0

Q ss_pred             cCCcEEEEeCCCCCC---chhhc-----CCcccccCEEEEEcCCcccccCC---hHHHHhHHHHhhcCCCCeEEEEeccC
Q 023354          192 ADYIIYIIDVSGGDK---IPRKG-----GPGITQADLLVINKTDLASAIGA---DLAVMERDALRMRDGGPFIFAQVKHG  260 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~-----~~~i~~ad~ivi~K~g~i~~~g~---~~e~~~~~~~~~~~~~~i~~isa~~g  260 (283)
                      ++..+++.|.++...   +....     ...-...-.++.||.|+......   ..+...+...+  .+.+.+++||++|
T Consensus        76 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~--~~~~~~e~Sak~g  153 (170)
T d1ek0a_          76 AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEE--KGLLFFETSAKTG  153 (170)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH--HTCEEEECCTTTC
T ss_pred             cceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHH--cCCEEEEecCCCC
Confidence            367899999876421   11110     01112344788899987654211   12222222222  2468899999999


Q ss_pred             CCHHHHHHHHHH
Q 023354          261 LGVEEIVNHILQ  272 (283)
Q Consensus       261 ~gi~~l~~~l~~  272 (283)
                      .|+++++..|.+
T Consensus       154 ~gV~e~F~~i~~  165 (170)
T d1ek0a_         154 ENVNDVFLGIGE  165 (170)
T ss_dssp             TTHHHHHHHHHT
T ss_pred             cCHHHHHHHHHH
Confidence            999999988754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.3e-07  Score=75.97  Aligned_cols=82  Identities=11%  Similarity=0.027  Sum_probs=46.0

Q ss_pred             cCCcEEEEeCCCCCC---chhhcC-----CcccccCEEEEEcCCcccccCChH-----------HHHhHHHHhhcCCCCe
Q 023354          192 ADYIIYIIDVSGGDK---IPRKGG-----PGITQADLLVINKTDLASAIGADL-----------AVMERDALRMRDGGPF  252 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~~-----~~i~~ad~ivi~K~g~i~~~g~~~-----------e~~~~~~~~~~~~~~i  252 (283)
                      ++..+++.|.+....   +.....     ..-..+-.+|.||+|+........           ......+.+.....+.
T Consensus        77 ~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  156 (183)
T d1mh1a_          77 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             cceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceE
Confidence            357889999876321   111000     001234478889999754310000           0000111222344678


Q ss_pred             EEEEeccCCCHHHHHHHHHHH
Q 023354          253 IFAQVKHGLGVEEIVNHILQA  273 (283)
Q Consensus       253 ~~isa~~g~gi~~l~~~l~~~  273 (283)
                      +++||++|.|++++++.+.+.
T Consensus       157 ~E~SAk~~~~V~e~F~~l~~~  177 (183)
T d1mh1a_         157 LECSALTQRGLKTVFDEAIRA  177 (183)
T ss_dssp             EECCTTTCTTHHHHHHHHHHH
T ss_pred             EEcCCCCCcCHHHHHHHHHHH
Confidence            999999999999999988754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.33  E-value=2.1e-07  Score=76.39  Aligned_cols=98  Identities=12%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             cCCchHHHHHHH-HHHh--cCCcEEEEeCCCCCCchhhcC----CcccccC-EEEEEcCCcccccCChHHHHhHHHHh--
Q 023354          176 CESGGDNLAANF-SREL--ADYIIYIIDVSGGDKIPRKGG----PGITQAD-LLVINKTDLASAIGADLAVMERDALR--  245 (283)
Q Consensus       176 ~eSgGq~q~~~i-a~al--~~~~l~llDpt~g~~l~~~~~----~~i~~ad-~ivi~K~g~i~~~g~~~e~~~~~~~~--  245 (283)
                      .++.|....+.- .+++  +|..|+|+|+..|..-+.+.-    ..+.... +|++||.|++... ...+.+...+..  
T Consensus        71 iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~-~~~~~i~~~i~~~l  149 (196)
T d1d2ea3          71 TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS-EMVELVELEIRELL  149 (196)
T ss_dssp             EECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH-HHHHHHHHHHHHHH
T ss_pred             ecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccH-HHHHHHHHHHHHHH
Confidence            345565443222 2233  478999999998865432210    0112222 4568999987531 222333322222  


Q ss_pred             --hcC---CCCeEEEEeccC----------CCHHHHHHHHHHHH
Q 023354          246 --MRD---GGPFIFAQVKHG----------LGVEEIVNHILQAW  274 (283)
Q Consensus       246 --~~~---~~~i~~isa~~g----------~gi~~l~~~l~~~~  274 (283)
                        ..+   .+|++++|+++|          .++.+|++.+.+..
T Consensus       150 ~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence              222   378999999988          47788888776543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.33  E-value=2.6e-07  Score=79.37  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=22.4

Q ss_pred             CCCeEEEEeccCCCHHHHHHHHHHHHH
Q 023354          249 GGPFIFAQVKHGLGVEEIVNHILQAWE  275 (283)
Q Consensus       249 ~~~i~~isa~~g~gi~~l~~~l~~~~~  275 (283)
                      -.|+++.||.++.|+..|++.+..+++
T Consensus       240 i~PV~~GSA~~n~GV~~LLd~i~~~~P  266 (267)
T d2dy1a2         240 LYPVALASGEREIGVLPLLELILEALP  266 (267)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEEEEeCcCCCCcCHHHHHHHHHHhCC
Confidence            357888899999999999999887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.4e-06  Score=69.76  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             cCCcEEEEeCCCCCC---chhhc------C-Cc-ccccCEEEEEcCCcccccCC--hHHHHhHHHHhhcCCCCeEEEEec
Q 023354          192 ADYIIYIIDVSGGDK---IPRKG------G-PG-ITQADLLVINKTDLASAIGA--DLAVMERDALRMRDGGPFIFAQVK  258 (283)
Q Consensus       192 ~~~~l~llDpt~g~~---l~~~~------~-~~-i~~ad~ivi~K~g~i~~~g~--~~e~~~~~~~~~~~~~~i~~isa~  258 (283)
                      ++..|++.|.++...   +....      . .. -...-.+|.+|.+.-...-.  ..+.. ..+.......+.+++||+
T Consensus        71 ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~-~~~~~~~~~~~~~e~SAk  149 (175)
T d2bmja1          71 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALCADMKRCSYYETCAT  149 (175)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHH-HHHHHTSTTEEEEEEBTT
T ss_pred             cceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHH-HHHHHHhCCCeEEEeCCC
Confidence            578899999876421   11110      0 00 01223567777775332111  11222 222334456688999999


Q ss_pred             cCCCHHHHHHHHHHHH
Q 023354          259 HGLGVEEIVNHILQAW  274 (283)
Q Consensus       259 ~g~gi~~l~~~l~~~~  274 (283)
                      ++.|+++++..+....
T Consensus       150 ~~~~v~~~F~~l~~~i  165 (175)
T d2bmja1         150 YGLNVDRVFQEVAQKV  165 (175)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999988776544

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=3.8e-07  Score=71.41  Aligned_cols=39  Identities=21%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      ++++|+|++|||||||++.|+..+... .++.+...+...
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~   42 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   42 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc
Confidence            589999999999999999999987766 578888877654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=4.7e-06  Score=67.76  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023354           83 TVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .|+|+|++|||||||++.|++-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=4.3e-07  Score=74.83  Aligned_cols=22  Identities=45%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhc
Q 023354           83 TVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .|+|+|..+||||||+++|+..
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            5899999999999999999654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.2e-07  Score=76.87  Aligned_cols=82  Identities=15%  Similarity=0.123  Sum_probs=48.1

Q ss_pred             cCCcEEEEeCCCCC---CchhhcCC-----cccccCEEEEEcCCcccccCC------------hHHHHhHHHHhhcCCCC
Q 023354          192 ADYIIYIIDVSGGD---KIPRKGGP-----GITQADLLVINKTDLASAIGA------------DLAVMERDALRMRDGGP  251 (283)
Q Consensus       192 ~~~~l~llDpt~g~---~l~~~~~~-----~i~~ad~ivi~K~g~i~~~g~------------~~e~~~~~~~~~~~~~~  251 (283)
                      ++..+++.|.+.-.   .+......     .-...-.++.||.|+......            ..+.. ..+.+...+.+
T Consensus        75 ~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~  153 (191)
T d2ngra_          75 TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETA-EKLARDLKAVK  153 (191)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH-HHHHHHTTCSC
T ss_pred             cceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHH-HHHHHHcCCCe
Confidence            35788999987642   11111000     012334689999997643110            01111 12223345568


Q ss_pred             eEEEEeccCCCHHHHHHHHHHHH
Q 023354          252 FIFAQVKHGLGVEEIVNHILQAW  274 (283)
Q Consensus       252 i~~isa~~g~gi~~l~~~l~~~~  274 (283)
                      .+++||++|.|++++++.+....
T Consensus       154 ~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         154 YVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHH
Confidence            89999999999999998887654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.14  E-value=7.1e-07  Score=74.51  Aligned_cols=75  Identities=19%  Similarity=0.165  Sum_probs=43.5

Q ss_pred             HhcCCcEEEEeCCCCCCchhhcCC----cccc-cCEEEEEcCCcccccCChHHHHhHHHHh----hcC---CCCeEEEEe
Q 023354          190 ELADYIIYIIDVSGGDKIPRKGGP----GITQ-ADLLVINKTDLASAIGADLAVMERDALR----MRD---GGPFIFAQV  257 (283)
Q Consensus       190 al~~~~l~llDpt~g~~l~~~~~~----~i~~-ad~ivi~K~g~i~~~g~~~e~~~~~~~~----~~~---~~~i~~isa  257 (283)
                      ..+|..++|+|+..|..-+.+...    .+.. .-+|++||+|++.+.....+.....+..    ..+   ..+++++||
T Consensus       111 ~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA  190 (222)
T d1zunb3         111 STCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSA  190 (222)
T ss_dssp             TTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCT
T ss_pred             ccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEc
Confidence            356899999999888543322100    0111 1378899999987632222222222222    212   235688999


Q ss_pred             ccCCCHH
Q 023354          258 KHGLGVE  264 (283)
Q Consensus       258 ~~g~gi~  264 (283)
                      ++|.|+.
T Consensus       191 ~~G~ni~  197 (222)
T d1zunb3         191 LKGDNVV  197 (222)
T ss_dssp             TTCTTTS
T ss_pred             ccCccCC
Confidence            9999883

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=7.1e-07  Score=71.53  Aligned_cols=81  Identities=17%  Similarity=0.166  Sum_probs=45.7

Q ss_pred             CCcEEEEeCCCCCCc---hhhcCC-----cccccCEEEEEcCCcccccCC------------hHHHHhHHHHhhcCCCCe
Q 023354          193 DYIIYIIDVSGGDKI---PRKGGP-----GITQADLLVINKTDLASAIGA------------DLAVMERDALRMRDGGPF  252 (283)
Q Consensus       193 ~~~l~llDpt~g~~l---~~~~~~-----~i~~ad~ivi~K~g~i~~~g~------------~~e~~~~~~~~~~~~~~i  252 (283)
                      +..+++.|.+....+   ......     .-...-.+|.||.|+......            ..+... .+.+.....+.
T Consensus        75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~-~~a~~~~~~~y  153 (179)
T d1m7ba_          75 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA-NMAKQIGAATY  153 (179)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH-HHHHHHTCSEE
T ss_pred             hhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHH-HHHHHhCCCeE
Confidence            578889998764211   111000     012234788899997542100            111111 22223344577


Q ss_pred             EEEEeccCC-CHHHHHHHHHHHH
Q 023354          253 IFAQVKHGL-GVEEIVNHILQAW  274 (283)
Q Consensus       253 ~~isa~~g~-gi~~l~~~l~~~~  274 (283)
                      +++||++|. |++++++.+....
T Consensus       154 ~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         154 IECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             EECBTTTBHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHH
Confidence            889999998 5999999876653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.02  E-value=1.5e-06  Score=68.48  Aligned_cols=38  Identities=18%  Similarity=0.130  Sum_probs=32.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      .+++|+|++|||||||++.|+..++.. .++.++..+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~   40 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   40 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence            378999999999999999999988876 58888877654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=1.2e-05  Score=69.03  Aligned_cols=130  Identities=15%  Similarity=0.076  Sum_probs=64.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH---hcccCCCcEEEEeecCCCCCHHHHHHhccccCC--------chHHHHHhCCCCCCC
Q 023354           82 FTVGIGGPVGTGKTALMLALC---KFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPE--------ERIRAVETGGCPHAA  150 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~---g~~~~~g~i~i~~~d~~~~~~~~~~~~ig~v~q--------~~~~~i~~~g~~~~~  150 (283)
                      ..|+|+|..|||||||+.+|+   |.+...|++. .+.......+.+..+.+.+-..        ..+.+++++|+..- 
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF-   84 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF-   84 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC-
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh-
Confidence            469999999999999999995   3333324442 1111222223333333322111        01123334443211 


Q ss_pred             hHHHHHHHHHHHHHccccccCCCcccCCchHHHHHHHHHHhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcC
Q 023354          151 IREDISINLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKT  226 (283)
Q Consensus       151 ~~~~~~~~~~~l~~l~~~~~~d~~i~eSgGq~q~~~ia~al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~  226 (283)
                                                  .|+.   .-+...+|..|+|+|+..|-+.+.+.    -.....+-.++|||.
T Consensus        85 ----------------------------~~e~---~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKm  133 (276)
T d2bv3a2          85 ----------------------------TIEV---ERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKM  133 (276)
T ss_dssp             ----------------------------STTH---HHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             ----------------------------HHHH---HHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecc
Confidence                                        1111   12334678999999999986544321    112245668999999


Q ss_pred             CcccccCChHHHHhHHHHhhc
Q 023354          227 DLASAIGADLAVMERDALRMR  247 (283)
Q Consensus       227 g~i~~~g~~~e~~~~~~~~~~  247 (283)
                      |+-.+  +..+.+. .+++.+
T Consensus       134 Dr~~a--d~~~~l~-ei~~~l  151 (276)
T d2bv3a2         134 DKTGA--DLWLVIR-TMQERL  151 (276)
T ss_dssp             TSTTC--CHHHHHH-HHHHTT
T ss_pred             ccccc--ccchhHH-HHHHHh
Confidence            99766  4544444 444443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=5.5e-06  Score=64.92  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeec
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTND  117 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d  117 (283)
                      .|.|+||+|+|||||++.++..+... ..+.+...+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~   38 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE   38 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence            58899999999999999999988765 455555444

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.5e-05  Score=63.45  Aligned_cols=26  Identities=23%  Similarity=0.381  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      |.+|+|+||+|||||||++.|...++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78899999999999999999988654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=1.5e-05  Score=62.42  Aligned_cols=25  Identities=36%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ...|+|+||+|||||||.+.|+..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999999865

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=1.8e-05  Score=63.82  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ++|+|+|++|||||||+|.|++.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999999984

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.56  E-value=1.8e-05  Score=61.74  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .|.+|.|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999998754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.53  E-value=2.2e-05  Score=61.21  Aligned_cols=28  Identities=32%  Similarity=0.412  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+|.+|.|+|++||||||+-++|+..+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4699999999999999999999998664

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=2.5e-05  Score=64.86  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEE
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLA  112 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~  112 (283)
                      +|.+++++|++|+|||||+|.|.+... .+|.|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            688999999999999999999998544 335543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.5e-05  Score=60.75  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..+.++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            357899999999999999999999865

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.50  E-value=3e-05  Score=60.37  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +++-.|+|+||+||||||+.+.|+..+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4577899999999999999999988653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.47  E-value=3.6e-05  Score=60.28  Aligned_cols=27  Identities=26%  Similarity=0.219  Sum_probs=24.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      .+|+|.|++||||||+++.|+..+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            579999999999999999999877654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.43  E-value=3.4e-05  Score=59.66  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+|.|.||+||||||+.+.|+..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.43  E-value=2.9e-05  Score=60.23  Aligned_cols=24  Identities=29%  Similarity=0.267  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..|+|+||+||||||+.+.|+..+
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998754

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.43  E-value=3.4e-05  Score=58.92  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHh
Q 023354           82 FTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|.|.|++|||||||.+.|+.
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998865

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.42  E-value=4.1e-05  Score=59.41  Aligned_cols=26  Identities=19%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ..+|.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46889999999999999999999764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.41  E-value=3.8e-05  Score=64.58  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 023354           83 TVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .|+|+|-.++|||||+..|+-
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHHH
Confidence            499999999999999999954

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.40  E-value=4.1e-05  Score=61.11  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++|..++|+||+||||||+.+.|+..+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            367889999999999999999999754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.40  E-value=3.6e-05  Score=61.58  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +..+|.|+||+||||||+.+.|+..+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=7.3e-05  Score=65.36  Aligned_cols=37  Identities=19%  Similarity=0.400  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeec
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTND  117 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d  117 (283)
                      +..+.|.|+.||||||||++|++.+++..++..+...
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~  202 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT  202 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeeccch
Confidence            4458999999999999999999998887777666543

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.34  E-value=8.7e-05  Score=58.69  Aligned_cols=27  Identities=37%  Similarity=0.588  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      .+|||.|+.|||||||.+.|...+...
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            478999999999999999999877654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=5.4e-05  Score=57.71  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .|.|+||+||||||+-+.|+..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.30  E-value=2.5e-05  Score=65.08  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEE
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLA  112 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~  112 (283)
                      ++.+++++|++|+|||||+|+|.+... .+|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            578899999999999999999998643 335443

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=6.3e-05  Score=60.26  Aligned_cols=26  Identities=23%  Similarity=0.157  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.+++.|+||+||||||+.+.|+..+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999865

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=3.9e-05  Score=60.82  Aligned_cols=27  Identities=41%  Similarity=0.572  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +|-+|.|+|++||||||+-+.|+..+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577999999999999999999988764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.22  E-value=8.2e-05  Score=59.58  Aligned_cols=26  Identities=15%  Similarity=0.175  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.+|.|+||+||||||+.+.|+..+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            56889999999999999999998854

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=7.9e-05  Score=58.62  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +|.|+||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.19  E-value=9e-05  Score=59.42  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=26.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEee
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTN  116 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~  116 (283)
                      .+|+++|.+|||||||.+.|+..+... -.+.+...
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~   38 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV   38 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcc
Confidence            368999999999999999999876543 34444443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00011  Score=60.02  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .|.++.|+||+|||||||++.|+...+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            478999999999999999999988654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.17  E-value=8.5e-05  Score=58.29  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKY  109 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g  109 (283)
                      .++.|.|++||||||+.+.|+..+...|
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~   29 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQG   29 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            3678899999999999999999876543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.15  E-value=0.00012  Score=62.28  Aligned_cols=23  Identities=43%  Similarity=0.560  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      -.+||+|.++||||||+++|++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            47999999999999999999985

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=9.8e-05  Score=64.96  Aligned_cols=45  Identities=22%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             HHHHhcCCcEEEEeCCCCCCchhhc----CCcccccCEEEEEcCCcccc
Q 023354          187 FSRELADYIIYIIDVSGGDKIPRKG----GPGITQADLLVINKTDLASA  231 (283)
Q Consensus       187 ia~al~~~~l~llDpt~g~~l~~~~----~~~i~~ad~ivi~K~g~i~~  231 (283)
                      -|..++|..|+|+|+..|...+.+.    -.....+-.+++||.|+...
T Consensus       115 ~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2         115 AALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALL  163 (341)
T ss_dssp             HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHH
T ss_pred             HHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccccc
Confidence            3445679999999999986543321    01124456899999999865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.11  E-value=0.00011  Score=58.19  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +|.|+||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999865

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00011  Score=58.46  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+|.|+||+||||||..+.|+..+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=9.7e-05  Score=57.60  Aligned_cols=24  Identities=29%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.|+|+|++||||||+-+.|+..+
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999998865

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=4.2e-05  Score=60.32  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+++|+|+|||||||+|.+|.-.+.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4788999999999999999976543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00019  Score=56.63  Aligned_cols=25  Identities=20%  Similarity=0.137  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+..+|.++|++||||||+.+.++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999998865

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.00023  Score=57.56  Aligned_cols=41  Identities=22%  Similarity=0.101  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDIFT  120 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~~~  120 (283)
                      +|.+|+|-|+.||||||+++.|...+...| ...+...++..
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~   42 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG   42 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCC
Confidence            588999999999999999999999776543 33334444443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00014  Score=64.50  Aligned_cols=28  Identities=36%  Similarity=0.551  Sum_probs=22.7

Q ss_pred             cccccCCCcEEEEEcCCCCcHHHHHHHHH
Q 023354           74 SRNFNERAFTVGIGGPVGTGKTALMLALC  102 (283)
Q Consensus        74 ~~~~~~~g~~v~ilG~nGsGKSTLl~~L~  102 (283)
                      .++|..+| +.+|+|+|||||||+|.+|+
T Consensus        19 ~i~f~~~~-l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESN-FTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCS-EEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCC-EEEEECCCCCCHHHHHHHHH
Confidence            45564444 78899999999999999984

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.06  E-value=0.0001  Score=58.75  Aligned_cols=24  Identities=21%  Similarity=0.184  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      -+|.|+||+||||||+.+.|+..+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            368899999999999999998765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00013  Score=58.12  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhccc
Q 023354           84 VGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        84 v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      |+|+||+|||||||++.|+...+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999988654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.05  E-value=9.3e-05  Score=61.87  Aligned_cols=22  Identities=27%  Similarity=0.249  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHh
Q 023354           82 FTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      -.|+|+|-.++|||||+..|+-
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            3689999999999999999964

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.02  E-value=0.00014  Score=56.58  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .|.|+|++||||||+-++|+..+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=9.8e-05  Score=63.00  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHh
Q 023354           82 FTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+.+|+|||||||||+|.+|.=
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3789999999999999999844

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00031  Score=57.20  Aligned_cols=36  Identities=17%  Similarity=0.102  Sum_probs=29.3

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEE
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAV  114 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~  114 (283)
                      ++|.+|+|-|+.||||||+++.|...+...| .+.+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            3689999999999999999999999876554 44443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.01  E-value=0.00021  Score=57.15  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.-.++|+||+||||||+.+.|+..+
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.00016  Score=57.00  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .|.|+||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998865

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00017  Score=58.20  Aligned_cols=25  Identities=40%  Similarity=0.587  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .++|+|.||+||||||+-+.|+..+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999999865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0002  Score=57.96  Aligned_cols=26  Identities=23%  Similarity=0.606  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ..+|||.|+.|||||||.+.|...+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35899999999999999999987664

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00018  Score=56.65  Aligned_cols=23  Identities=13%  Similarity=0.033  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++.|+||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00021  Score=56.81  Aligned_cols=25  Identities=20%  Similarity=0.159  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ..++|+||+|||||||++.|+...+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            4689999999999999999987543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.96  E-value=0.00017  Score=60.72  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .-.|+|+|.+|||||||+|.|+|.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            568999999999999999999995

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.00019  Score=56.69  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .|.|+||+||||||+.+.|+..+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57799999999999999998865

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.93  E-value=0.00018  Score=56.26  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .|.|+|++||||||+-+.|+..+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999998754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00021  Score=57.28  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHhccc
Q 023354           84 VGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        84 v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      |+|+||+|||||||++.|+....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999987653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.90  E-value=0.0002  Score=61.83  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .|||+|.++||||||+|+|+|.-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.90  E-value=0.00021  Score=61.33  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +-.+||+|.|+||||||+++|++.-
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCC
Confidence            4679999999999999999999853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.82  E-value=0.0003  Score=58.45  Aligned_cols=26  Identities=31%  Similarity=0.411  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ...|.|.||+|||||||.++|++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34588999999999999999999764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.75  E-value=0.00031  Score=55.84  Aligned_cols=27  Identities=37%  Similarity=0.586  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+.-+|+|-|+.||||||+++.|...+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999998865

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00084  Score=57.95  Aligned_cols=46  Identities=22%  Similarity=0.342  Sum_probs=34.4

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccC--C-CcEEEEeecCCCCCHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRD--K-YSLAAVTNDIFTKEDGE  125 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~--~-g~i~i~~~d~~~~~~~~  125 (283)
                      ...+|||.|+.|||||||.+.|..++..  . -++.++..|-.-.+...
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~~~~  127 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQV  127 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECCchH
Confidence            3579999999999999999999988752  2 46777766655444433

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.70  E-value=0.00021  Score=61.29  Aligned_cols=40  Identities=13%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~  118 (283)
                      .+-++|||.|++||||||+.+.|...++.. -++.++..|-
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Ds   42 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA   42 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence            356799999999999999999998887654 3555555543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.69  E-value=0.00038  Score=56.36  Aligned_cols=24  Identities=25%  Similarity=0.542  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      -+|+|.||+||||||+-+.|+..+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00036  Score=62.54  Aligned_cols=25  Identities=24%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ...|+|+|++|||||||+|+|.|.-
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4579999999999999999999954

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00059  Score=56.64  Aligned_cols=33  Identities=21%  Similarity=0.139  Sum_probs=27.3

Q ss_pred             CcccccccCCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           71 PILSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        71 ~~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .-+++.+.....++.|.|||.+||||+||.++=
T Consensus        31 VpNdi~l~~~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          31 IANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEECCCceEEEEeccCchhhHHHHHHHHH
Confidence            446667766678899999999999999999843

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.00066  Score=52.86  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=25.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+|.+|.|-|+.|||||||.+.++..+.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            4688999999999999999999988654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.59  E-value=0.00049  Score=54.55  Aligned_cols=23  Identities=30%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHh
Q 023354           81 AFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .-+|||.|++||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.0013  Score=52.54  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeec
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTND  117 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d  117 (283)
                      +|+|-|.-||||||+++.|...+...| .+.+...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            589999999999999999998776554 55554433

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.56  E-value=0.0021  Score=52.75  Aligned_cols=28  Identities=32%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      ...+.|.||+|+||||+++.|+..+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~   70 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDK   70 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence            4579999999999999999999988654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00075  Score=54.95  Aligned_cols=30  Identities=33%  Similarity=0.229  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY  109 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g  109 (283)
                      +|.+|+|-|+-||||||++++|...+...+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~   31 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNC   31 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence            689999999999999999999998776544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.0018  Score=55.15  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccC---C-CcEEEEeecCCCCC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRD---K-YSLAAVTNDIFTKE  122 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~---~-g~i~i~~~d~~~~~  122 (283)
                      ..+|||.|+.|||||||.+.|...+..   . -.|.++..|-...+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~t   72 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT   72 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCCC
Confidence            468999999999999999888765432   1 24555555544333

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00053  Score=55.96  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ++.+|+|-|+-||||||+++.|...+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999999998764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.36  E-value=0.001  Score=54.06  Aligned_cols=28  Identities=32%  Similarity=0.493  Sum_probs=24.7

Q ss_pred             cCCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           78 NERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..+|.+|-|.|.+|||||||.+.|...+
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3569999999999999999999998654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.35  E-value=0.0016  Score=58.10  Aligned_cols=41  Identities=22%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      .+.-.+.|.||.||||||++..++..+... .+|.-+..++.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE  197 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE  197 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcc
Confidence            345689999999999999999999976543 67766665554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0011  Score=54.49  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ...+.|.||+|+||||++++|+..+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            35689999999999999999999654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.32  E-value=0.0011  Score=56.07  Aligned_cols=27  Identities=33%  Similarity=0.266  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .++-.++|+|.+++|||||+|.|.|..
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccc
Confidence            356789999999999999999999954

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.00098  Score=53.69  Aligned_cols=22  Identities=32%  Similarity=0.685  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHh
Q 023354           82 FTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|||.|+.||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0012  Score=51.95  Aligned_cols=26  Identities=27%  Similarity=0.232  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .+|.++.|.||+|+|||||...++..
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            46999999999999999999888764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.29  E-value=0.00088  Score=54.60  Aligned_cols=26  Identities=38%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ...+.|.||+|+|||||+++|+..+.
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            34588999999999999999998653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.28  E-value=0.00091  Score=54.82  Aligned_cols=25  Identities=32%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .-+.+.||+|+|||||.+++++.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3578999999999999999998654

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.26  E-value=0.0011  Score=53.45  Aligned_cols=23  Identities=26%  Similarity=0.634  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .+|||+|..||||||+.+.|..+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            48999999999999999988653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.25  E-value=0.001  Score=54.38  Aligned_cols=39  Identities=21%  Similarity=0.172  Sum_probs=30.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEEeec
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTND  117 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~~~d  117 (283)
                      .+|.++.|.|++|||||||+..++-... ....+.++..+
T Consensus        24 ~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          24 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            4689999999999999999988877543 33566666543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.11  E-value=0.0012  Score=53.93  Aligned_cols=26  Identities=35%  Similarity=0.433  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      ..+.|.||+|+|||||.++|+..+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC
Confidence            35889999999999999999987653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.06  E-value=0.0017  Score=53.44  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=23.2

Q ss_pred             cccccccCCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      -+++.+..  .++.|.|||.+||||+||.+.=
T Consensus        28 pNdi~~~~--~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          28 PNDLEMAH--ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESS--CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cceEEeCC--cEEEEECCCccccchhhhhhHH
Confidence            34555543  4789999999999999998753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0014  Score=53.31  Aligned_cols=24  Identities=50%  Similarity=0.548  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..+.|.||+|+|||||+++++..+
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            347899999999999999999865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.98  E-value=0.0018  Score=53.20  Aligned_cols=26  Identities=27%  Similarity=0.143  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+..+.|.||.|+|||||++.++...
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46789999999999999999987754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.002  Score=50.73  Aligned_cols=21  Identities=14%  Similarity=0.265  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHH
Q 023354           82 FTVGIGGPVGTGKTALMLALC  102 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~  102 (283)
                      -++.|+|..|||||||++.+.
T Consensus         3 iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            478999999999999999994

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.92  E-value=0.0019  Score=55.10  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +.++++|.-+||||||||+|+|.-
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCC
Confidence            579999999999999999999954

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.82  E-value=0.0021  Score=55.19  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=27.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      ++.-+.++||+|+|||+|.++|+..+.. --+.++..++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~-~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC-CEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcccc-chhccccccc
Confidence            3445779999999999999999997542 2344444444

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.76  E-value=0.0015  Score=54.01  Aligned_cols=24  Identities=38%  Similarity=0.360  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+.|.||+|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            345569999999999999998764

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.76  E-value=0.0044  Score=52.17  Aligned_cols=52  Identities=23%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEEeecCCCCCHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      +.|.++-|.|++|||||||.-.++.... +.+.+.+++.+-. .+ .++.+++|+
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~-~~-~~~a~~~Gv  107 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA-LD-PVYARALGV  107 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CC-HHHHHHTTC
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCcc-CC-HHHHHHhCC
Confidence            4688999999999999999988888665 4477777766532 23 356667776

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.72  E-value=0.0027  Score=51.62  Aligned_cols=28  Identities=11%  Similarity=0.106  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHh-cccCC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCK-FLRDK  108 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g-~~~~~  108 (283)
                      -.+|.|+|..|||||||++.+.. ...|+
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~~pT   34 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHVVLT   34 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence            35789999999999999999854 33455

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.71  E-value=0.0024  Score=54.08  Aligned_cols=25  Identities=12%  Similarity=0.142  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      -+.++++|.-+||||||||+|+|.-
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCC
Confidence            3569999999999999999999954

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.70  E-value=0.0026  Score=52.87  Aligned_cols=24  Identities=33%  Similarity=0.421  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      -|.|.||+|+|||+|.++|+....
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECcCCCCHHHHHHHHhhccc
Confidence            488999999999999999998653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.66  E-value=0.0034  Score=48.93  Aligned_cols=26  Identities=12%  Similarity=0.133  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      +++|+|..|+|||||++.+.....|+
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t   29 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAG   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCC
Confidence            68999999999999999997755555

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.62  E-value=0.0027  Score=51.21  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=22.1

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|.++.|.|++|||||||...++-
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999987754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.51  E-value=0.0033  Score=52.29  Aligned_cols=24  Identities=42%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      -+.|.||+|+|||+|.++|+..+.
T Consensus        44 giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEecCCCCChhHHHHHHHHHcC
Confidence            488999999999999999998653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0031  Score=51.04  Aligned_cols=24  Identities=33%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      -+.|.||+|+||||+.++++..+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHHHh
Confidence            478999999999999999988654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.0031  Score=50.96  Aligned_cols=24  Identities=38%  Similarity=0.538  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+.|.||+|+||||++++|+..+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            377999999999999999998653

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.48  E-value=0.002  Score=55.61  Aligned_cols=26  Identities=35%  Similarity=0.360  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRD  107 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~  107 (283)
                      --+.|.|++|+|||||++.|++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35889999999999999999998754

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0034  Score=52.53  Aligned_cols=25  Identities=40%  Similarity=0.399  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .-+.|.||+|+|||+|.+.|+..+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHcC
Confidence            4578999999999999999998764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0032  Score=53.37  Aligned_cols=27  Identities=33%  Similarity=0.267  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+-.+|+|+||.++|||||||.|+|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            345689999999999999999999854

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.40  E-value=0.0042  Score=50.63  Aligned_cols=22  Identities=14%  Similarity=0.066  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHh
Q 023354           82 FTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|||.|+.||||||+.+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999965

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.38  E-value=0.0048  Score=51.35  Aligned_cols=40  Identities=8%  Similarity=0.019  Sum_probs=30.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcc-cC-CCcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFL-RD-KYSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~-~~-~g~i~i~~~d~  118 (283)
                      .+|+++.|.|++|+|||||+..++-.+ .. ...+.+...+.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~   74 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeecc
Confidence            469999999999999999988887533 23 35777776654

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0034  Score=51.32  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      .+.|.||+|+||||+.++++..+
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhh
Confidence            47899999999999999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.0046  Score=48.31  Aligned_cols=23  Identities=13%  Similarity=0.228  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      -++.|+|..|+|||||++.+..-
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.19  E-value=0.0046  Score=50.26  Aligned_cols=25  Identities=32%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|.++.|.|++|||||||.-.++-
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999876653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.18  E-value=0.0048  Score=51.41  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      -+.|.||+|+|||+|+++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeEEecCCCCCchHHHHHHHHHh
Confidence            38899999999999999999964

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.97  E-value=0.0053  Score=51.39  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ..-+.|.||+|+|||+|.+++++.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34588999999999999999999763

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0063  Score=49.42  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+|+|=|+-||||||+++.|...+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4789999999999999999998664

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.91  E-value=0.0067  Score=48.44  Aligned_cols=39  Identities=21%  Similarity=0.167  Sum_probs=27.7

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh--cccCCCcEEEEeec
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK--FLRDKYSLAAVTND  117 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g--~~~~~g~i~i~~~d  117 (283)
                      .+|.++.|.|++|+|||||...++-  .......+.++..+
T Consensus        24 ~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e   64 (242)
T d1tf7a1          24 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE   64 (242)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence            5799999999999999999865443  22223466665544

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0082  Score=48.56  Aligned_cols=25  Identities=36%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|.++.|.|++|||||||...++.
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999988874

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.82  E-value=0.0075  Score=48.39  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .+|.++.|.|++|+|||||...++-
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999888864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.015  Score=48.57  Aligned_cols=52  Identities=23%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEEeecCCCCCHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      .+|.++-|.||+|||||||+-.++.... +.+.+.++..+-. . +.++.+.+|+
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~-~-~~~~a~~~Gv  104 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-L-DPIYARKLGV  104 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-C-CHHHHHHTTC
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccc-c-CHHHHHHhCC
Confidence            3688999999999999999888877654 4566666655432 2 2345666775

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.69  E-value=0.009  Score=52.37  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+...+.+.||+|+|||||.+.|++.+.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3467899999999999999999999764

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.59  E-value=0.016  Score=50.13  Aligned_cols=34  Identities=12%  Similarity=0.093  Sum_probs=27.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEe
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVT  115 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~  115 (283)
                      -+|.|=|+-||||||+++.|...+...+.+.+..
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~   40 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP   40 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEEC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhccCCCeEEEe
Confidence            3688999999999999999999877665665554

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.40  E-value=0.012  Score=46.21  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=22.5

Q ss_pred             ccCCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           77 FNERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        77 ~~~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      +...|.-|.|.|++|+|||||...|..
T Consensus        10 v~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          10 VDIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            345677899999999999999877765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.35  E-value=0.0098  Score=53.59  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .-|.++||+|||||-|.+.|++++.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhC
Confidence            3599999999999999999999764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.22  E-value=0.024  Score=47.53  Aligned_cols=52  Identities=21%  Similarity=0.238  Sum_probs=35.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEEeecCCCCCHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAVTNDIFTKEDGEFLMRNGA  132 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~~~d~~~~~~~~~~~~ig~  132 (283)
                      ..|.++-|.|++|+|||||+-.++.... ..+.+.+++.+-. . +.++.+++|+
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~-~-~~e~a~~~Gv  110 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA-L-DPDYAKKLGV  110 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC-C-CHHHHHHHTC
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc-C-CHHHHHHhCC
Confidence            4589999999999999999766666544 4466666555432 2 3345566665

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.20  E-value=0.013  Score=46.13  Aligned_cols=29  Identities=24%  Similarity=0.234  Sum_probs=23.3

Q ss_pred             ccccCCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           75 RNFNERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        75 ~~~~~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .-+...|.-+.|.|++|+|||||...|..
T Consensus         9 ~~v~~~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           9 VLLEVFGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            33445677899999999999999877754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.015  Score=49.31  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+|.+++|+|+.|+|||||+..|+....
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            5799999999999999999999988554

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.016  Score=47.83  Aligned_cols=39  Identities=18%  Similarity=0.197  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc-----------CCCcEEEEeecC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR-----------DKYSLAAVTNDI  118 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~-----------~~g~i~i~~~d~  118 (283)
                      +|.++.|.|++|+|||||+-.|+-.+.           +.+.+.+...+.
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~   77 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED   77 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccc
Confidence            488999999999999999987764321           125677666554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.79  E-value=0.018  Score=49.77  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeec
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTND  117 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d  117 (283)
                      -+|.|=|+-||||||+++.|...+...| .+.+...+
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP   42 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP   42 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence            4689999999999999999999877653 56555443

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.75  E-value=0.018  Score=44.95  Aligned_cols=28  Identities=32%  Similarity=0.326  Sum_probs=22.6

Q ss_pred             cccCCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           76 NFNERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        76 ~~~~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      -+...|.-|.|.|++|+|||||.-.|+.
T Consensus        10 ~v~~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          10 LVDVYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3345677899999999999999877655

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.75  E-value=0.035  Score=41.69  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=25.5

Q ss_pred             CcEEEEEcCCCCcHHH-HHHHHHhcccCCCcEEEEeecC
Q 023354           81 AFTVGIGGPVGTGKTA-LMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        81 g~~v~ilG~nGsGKST-Ll~~L~g~~~~~g~i~i~~~d~  118 (283)
                      |.+-.|+||-.||||| ||+.+-.+.....++.+..-..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~   40 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI   40 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcc
Confidence            5677899999999999 5555544332334666665443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.74  E-value=0.026  Score=48.45  Aligned_cols=37  Identities=27%  Similarity=0.223  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      .+.+.||+|+|||.|.+.|++.+... .-+.+.+.++.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~  162 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL  162 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhh
Confidence            45567999999999999999976432 45666666664

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.016  Score=46.19  Aligned_cols=25  Identities=28%  Similarity=0.315  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ..-+.|+|++|+|||+++..|+..+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHH
Confidence            4578999999999999999998854

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.02  Score=48.93  Aligned_cols=37  Identities=27%  Similarity=0.266  Sum_probs=26.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      ...+.++||+|+|||.|.+.|+..+.. .-+.++..++
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~~-~~i~~d~s~~   88 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALGI-ELLRFDMSEY   88 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHTC-EEEEEEGGGC
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhccC-CeeEeccccc
Confidence            346889999999999999999997631 2344444443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.021  Score=47.88  Aligned_cols=26  Identities=31%  Similarity=0.281  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ...-+.|+|++|+|||+++..|+..+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            34678899999999999999998854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.02  Score=50.49  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      .-+.|+|++|||||++++.|+-.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            45899999999999999866543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.023  Score=45.43  Aligned_cols=26  Identities=31%  Similarity=0.444  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      ...+.|.||+|+||||+.+.++..+-
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            34588999999999999999998653

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.09  E-value=0.027  Score=48.55  Aligned_cols=25  Identities=36%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      -+|.|=|+-||||||+++.|...+.
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            3588999999999999999987654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.93  E-value=0.037  Score=45.05  Aligned_cols=52  Identities=27%  Similarity=0.354  Sum_probs=36.7

Q ss_pred             cCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHH
Q 023354          218 ADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL  271 (283)
Q Consensus       218 ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~  271 (283)
                      .-.||+||.|++..  +..+.+...........+++.+|++++.|+++|.+++.
T Consensus        43 ~pvIvlnK~DL~~~--~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          43 ETVMVINKMDLYDE--DDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             EEEEEECCGGGCCH--HHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             CEEEEEeCcccCCH--HHHHHHHHhhcccccceeEEEeccccchhHhhHHHHhc
Confidence            45899999999754  23333333333333456899999999999999988774

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.86  E-value=0.033  Score=46.51  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ...+++|.|..|.|||||.+.++..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3668999999999999999998764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.059  Score=46.86  Aligned_cols=23  Identities=35%  Similarity=0.319  Sum_probs=19.1

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHH
Q 023354           80 RAFTVGIGGPVGTGKTALMLALC  102 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~  102 (283)
                      .+.++.|.||+|+||||++..+.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHH
Confidence            46799999999999999885543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.03  Score=45.52  Aligned_cols=24  Identities=33%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+.|.||+|+||||+.++++..+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Confidence            477889999999999999988654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.25  E-value=0.025  Score=47.07  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCcHHHHH-HHHHhccc----CCCcEEEEe
Q 023354           81 AFTVGIGGPVGTGKTALM-LALCKFLR----DKYSLAAVT  115 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl-~~L~g~~~----~~g~i~i~~  115 (283)
                      |. +.|+|++||||||+| ..+..++.    +..+|.+..
T Consensus        15 ~~-~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt   53 (306)
T d1uaaa1          15 GP-CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVT   53 (306)
T ss_dssp             SE-EEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred             CC-EEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEe
Confidence            44 568899999999764 44444332    124776665

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.096  Score=38.77  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCCC-cEEEEeecC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDKY-SLAAVTNDI  118 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~g-~i~i~~~d~  118 (283)
                      +|.+..|+||-.|||||-|-..+..+...| .+.+.....
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~   40 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK   40 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence            588899999999999998777776666554 466655443

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.18  E-value=0.072  Score=44.61  Aligned_cols=26  Identities=31%  Similarity=0.506  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      -+|.+++|+|+.|+|||||+..++..
T Consensus        66 gkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          66 AKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            57999999999999999998888764

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.07  E-value=0.046  Score=40.00  Aligned_cols=39  Identities=18%  Similarity=0.352  Sum_probs=29.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh-cccCC--CcEEEEeec
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK-FLRDK--YSLAAVTND  117 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g-~~~~~--g~i~i~~~d  117 (283)
                      ++|..+.+.|-.|||||||-++|.- ++.-.  ..+.+...+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            5699999999999999999999955 44433  367666444

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.02  E-value=0.037  Score=44.64  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHh
Q 023354           83 TVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      .|+|+|-.++|||||+..|+.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            589999999999999998864

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.82  E-value=0.032  Score=46.89  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCcHHHHH-HHHHhccc----CCCcEEEEe
Q 023354           80 RAFTVGIGGPVGTGKTALM-LALCKFLR----DKYSLAAVT  115 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl-~~L~g~~~----~~g~i~i~~  115 (283)
                      .|. +.|.|++||||||.| ..++.++.    +..+|.+..
T Consensus        24 ~g~-~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt   63 (318)
T d1pjra1          24 EGP-LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT   63 (318)
T ss_dssp             SSC-EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEE
T ss_pred             CCC-EEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEe
Confidence            355 668899999999765 33333322    114666654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.54  E-value=0.052  Score=45.26  Aligned_cols=26  Identities=31%  Similarity=0.400  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      +--++.|.||.++|||||+++|+.++
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999999987

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.53  E-value=0.05  Score=43.63  Aligned_cols=23  Identities=43%  Similarity=0.460  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHhccc
Q 023354           84 VGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        84 v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      +.|-||+|+|||-|+++++..+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999998654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.49  E-value=0.046  Score=39.47  Aligned_cols=28  Identities=18%  Similarity=0.101  Sum_probs=20.5

Q ss_pred             cCCCcEEEEEcCCCCcHHHHH-HHHHhcc
Q 023354           78 NERAFTVGIGGPVGTGKTALM-LALCKFL  105 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl-~~L~g~~  105 (283)
                      -++|..+.|..|+|||||... ..+....
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            457899999999999999443 4444443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=90.74  E-value=0.072  Score=42.50  Aligned_cols=28  Identities=21%  Similarity=0.444  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+--.+.|.||+++|||++..+|+..+.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            3456899999999999999999999864

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.56  E-value=0.12  Score=42.31  Aligned_cols=39  Identities=26%  Similarity=0.175  Sum_probs=32.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      .+|+|.|.=|+||||+.-.|+..+... -+|.+++.|+..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~   41 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA   41 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            368899999999999999998877655 479999998753

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=90.46  E-value=0.068  Score=46.54  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCCCcEEEEeecC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDI  118 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~g~i~i~~~d~  118 (283)
                      -..+.++||+|+|||-|.+.|+.++.. .-+.++...+
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~-~~ir~D~s~~  104 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDI-PIAISDATSL  104 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEGGGC
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhccc-ceeehhhhhc
Confidence            345889999999999999999987531 2334444433

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.78  E-value=0.09  Score=44.74  Aligned_cols=24  Identities=38%  Similarity=0.437  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHhccc
Q 023354           83 TVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        83 ~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+.++||+|+|||.|.+.|+..+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            677899999999999999999764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.64  E-value=0.066  Score=47.03  Aligned_cols=24  Identities=29%  Similarity=0.289  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhc
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKF  104 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~  104 (283)
                      ...+.|+|++|+|||+++.-|+..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHH
Confidence            445789999999999999877754

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.53  E-value=0.43  Score=39.64  Aligned_cols=34  Identities=26%  Similarity=-0.038  Sum_probs=25.5

Q ss_pred             cccccccCCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 023354           72 ILSRNFNERAFTVGIGGPVGTGKTALMLALCKFL  105 (283)
Q Consensus        72 ~~~~~~~~~g~~v~ilG~nGsGKSTLl~~L~g~~  105 (283)
                      ++-..-..+|.+++|+|+.|+|||+|+..++-..
T Consensus        58 ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          58 IDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             EeccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            3333334579999999999999999987765433

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.44  E-value=0.17  Score=41.44  Aligned_cols=39  Identities=23%  Similarity=0.172  Sum_probs=32.8

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      ..++.+.|.-|+||||+--.|+-.+... .++.+++.|+.
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5678899999999999999998887655 58888888864

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.99  E-value=0.19  Score=37.58  Aligned_cols=40  Identities=15%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecC
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDI  118 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~  118 (283)
                      ..|.+-.|+||-.|||||-|-..+..+... -++.++....
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~   45 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI   45 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEecc
Confidence            358999999999999999777776655544 3566655433

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.90  E-value=0.18  Score=39.88  Aligned_cols=40  Identities=33%  Similarity=0.381  Sum_probs=32.2

Q ss_pred             CcEEEEE-cCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           81 AFTVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        81 g~~v~il-G~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      |.+|++. +.-|+||||+--.|+..+... .++.+++.|+..
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~   43 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTM   43 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4678888 778999999999999887755 488888877643

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.74  E-value=0.096  Score=43.26  Aligned_cols=37  Identities=11%  Similarity=0.063  Sum_probs=24.2

Q ss_pred             cCCCcEEEEEcCCCCcHHH-HH-HHHHhcccCCCcEEEE
Q 023354           78 NERAFTVGIGGPVGTGKTA-LM-LALCKFLRDKYSLAAV  114 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKST-Ll-~~L~g~~~~~g~i~i~  114 (283)
                      -.+|..+.|.+|+|||||+ ++ .++....+...++.+.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi   44 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLIL   44 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEE
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            3578889999999999996 33 4443333333455544

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.2  Score=40.88  Aligned_cols=39  Identities=26%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCC
Q 023354           81 AFTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIF  119 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~  119 (283)
                      ..++.+.|.=|+||||+.-.|+-.+... .++.+++.|+.
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5677777999999999988888777655 47888888875

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.01  E-value=0.15  Score=39.64  Aligned_cols=36  Identities=19%  Similarity=0.012  Sum_probs=29.1

Q ss_pred             cEEEEEcCC-CCcHHHHHHHHHhcccCCC-cEEEEeec
Q 023354           82 FTVGIGGPV-GTGKTALMLALCKFLRDKY-SLAAVTND  117 (283)
Q Consensus        82 ~~v~ilG~n-GsGKSTLl~~L~g~~~~~g-~i~i~~~d  117 (283)
                      .++.|.|-. |+||||+.-.|+..+...| ++.++.-+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            467899996 9999999999999887664 77776533

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.40  E-value=0.1  Score=38.01  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=17.2

Q ss_pred             CcEEEEEcCCCCcHHHHHHHHH
Q 023354           81 AFTVGIGGPVGTGKTALMLALC  102 (283)
Q Consensus        81 g~~v~ilG~nGsGKSTLl~~L~  102 (283)
                      -....|.+|.|||||+++-.++
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHH
Confidence            3567789999999999875443

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.31  E-value=0.24  Score=39.00  Aligned_cols=38  Identities=32%  Similarity=0.375  Sum_probs=30.7

Q ss_pred             EEEEE-cCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           83 TVGIG-GPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        83 ~v~il-G~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      +|+|+ |.-|+||||+.-.|+..+... .++.+++-|+..
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~   42 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITM   42 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            56666 899999999999999887654 588888877654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.69  E-value=0.15  Score=42.83  Aligned_cols=25  Identities=28%  Similarity=0.185  Sum_probs=22.0

Q ss_pred             CCCcEEEEEcCCCCcHHHHHHHHHh
Q 023354           79 ERAFTVGIGGPVGTGKTALMLALCK  103 (283)
Q Consensus        79 ~~g~~v~ilG~nGsGKSTLl~~L~g  103 (283)
                      -+|.+++|+|+.|+|||+|+..++.
T Consensus        66 g~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          66 GRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             BTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             cCCCEEEeecCCCCChHHHHHHHHH
Confidence            5799999999999999999876654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.51  E-value=0.19  Score=39.15  Aligned_cols=56  Identities=21%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             ccccCEEEEEcCCcccccC--ChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHHHHHHH
Q 023354          215 ITQADLLVINKTDLASAIG--ADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL  271 (283)
Q Consensus       215 i~~ad~ivi~K~g~i~~~g--~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l~~~l~  271 (283)
                      +...+.||+-....+....  ...+.+...+....+..+++..|| |=.+.+++.+||.
T Consensus       136 ~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSA-Tl~n~~~~~~~l~  193 (202)
T d2p6ra3         136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSA-TAPNVTEIAEWLD  193 (202)
T ss_dssp             GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEEC-CCTTHHHHHHHTT
T ss_pred             hhhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcC-CCCcHHHHHHHcC
Confidence            3444566666666654421  223334445556667778888887 4346778777763

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.45  E-value=0.21  Score=39.27  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR  106 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~  106 (283)
                      .+..+.+-||+|+||||+.+.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            478899999999999999999998653

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.03  E-value=0.34  Score=39.83  Aligned_cols=39  Identities=23%  Similarity=0.158  Sum_probs=31.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHHhcccCC-CcEEEEeecCCC
Q 023354           82 FTVGIGGPVGTGKTALMLALCKFLRDK-YSLAAVTNDIFT  120 (283)
Q Consensus        82 ~~v~ilG~nGsGKSTLl~~L~g~~~~~-g~i~i~~~d~~~  120 (283)
                      .+|+|.|.=|+||||+.-.|+-.+... -+|.+++.|++.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~   42 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA   42 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            367889999999999988887766544 489988888753

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.25  E-value=0.21  Score=39.97  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhccc-CCCcEEEE
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLR-DKYSLAAV  114 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~-~~g~i~i~  114 (283)
                      +|+-+.|+.|+|+|||+..-..+-... +..++.++
T Consensus        57 ~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv   92 (237)
T d1gkub1          57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVI   92 (237)
T ss_dssp             TTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEE
T ss_pred             CCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEE
Confidence            677899999999999976544433222 23444443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=83.98  E-value=0.89  Score=37.15  Aligned_cols=79  Identities=18%  Similarity=0.153  Sum_probs=48.0

Q ss_pred             hcCCcEEEEeCCCC---CCc-hhhcCCcccccCEEEEEcCCcccccCChHHHHhHHHHhhcCCCCeEEEEeccCCCHHHH
Q 023354          191 LADYIIYIIDVSGG---DKI-PRKGGPGITQADLLVINKTDLASAIGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEI  266 (283)
Q Consensus       191 l~~~~l~llDpt~g---~~l-~~~~~~~i~~ad~ivi~K~g~i~~~g~~~e~~~~~~~~~~~~~~i~~isa~~g~gi~~l  266 (283)
                      .+|.+|.|+|+...   .+. -.+...  ...-++|+||+|++..  ...+...++...  .+.+.+.+|++++.++..+
T Consensus        15 ~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~--~~~~~w~~~f~~--~~~~~i~isa~~~~~~~~~   88 (273)
T d1puja_          15 LIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA--AVTQQWKEHFEN--QGIRSLSINSVNGQGLNQI   88 (273)
T ss_dssp             GCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH--HHHHHHHHHHHT--TTCCEEECCTTTCTTGGGH
T ss_pred             hCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCch--HHHHHHHHHHHh--cCCccceeecccCCCcccc
Confidence            45789999995432   211 111111  2345899999998754  222222222222  3457889999999998887


Q ss_pred             HHHHHHHHH
Q 023354          267 VNHILQAWE  275 (283)
Q Consensus       267 ~~~l~~~~~  275 (283)
                      .+.+...+.
T Consensus        89 ~~~~~~~l~   97 (273)
T d1puja_          89 VPASKEILQ   97 (273)
T ss_dssp             HHHHHHHHH
T ss_pred             chhhhhhhh
Confidence            777766544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.36  E-value=0.34  Score=40.91  Aligned_cols=21  Identities=38%  Similarity=0.370  Sum_probs=17.8

Q ss_pred             cCCCcEEEEEcCCCCcHHHHH
Q 023354           78 NERAFTVGIGGPVGTGKTALM   98 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl   98 (283)
                      .+.|.+..+.|.+|+|||||-
T Consensus        11 ~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          11 GEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CTTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCCEEEEEccCCCCcccce
Confidence            346888899999999999964

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=82.01  E-value=0.6  Score=37.83  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCcHHHHHHHHHhcccCC
Q 023354           80 RAFTVGIGGPVGTGKTALMLALCKFLRDK  108 (283)
Q Consensus        80 ~g~~v~ilG~nGsGKSTLl~~L~g~~~~~  108 (283)
                      ...-|.|.|++|+||+++.+.|-..-...
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~   50 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDRS   50 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTTT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCc
Confidence            35568899999999999999997654433

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=81.85  E-value=0.34  Score=41.04  Aligned_cols=20  Identities=35%  Similarity=0.333  Sum_probs=17.4

Q ss_pred             cCCCcEEEEEcCCCCcHHHH
Q 023354           78 NERAFTVGIGGPVGTGKTAL   97 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTL   97 (283)
                      .+.|.+..+.|.+|+|||||
T Consensus        11 ~~~~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          11 GKEGDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             CTTCCEEEEEECTTSCHHHH
T ss_pred             CCCCCEEEEEccCCCCcccc
Confidence            34578899999999999996

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.13  E-value=0.46  Score=40.27  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=18.2

Q ss_pred             cCCCcEEEEEcCCCCcHHHHH
Q 023354           78 NERAFTVGIGGPVGTGKTALM   98 (283)
Q Consensus        78 ~~~g~~v~ilG~nGsGKSTLl   98 (283)
                      .+.|.+..+.|-+|+|||||-
T Consensus        11 ~~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          11 GKQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CTTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCCEEEEEccCCCCcccce
Confidence            456888899999999999985