Citrus Sinensis ID: 023360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MEEALRQIACTSSAGMDTQRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKANKLKAKIQSSACESSDSSDSECEEEEVVQMIDGTQVEDGLLNLMPVIRSEESSPSPNVVGTDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQGSKSLELGLR
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHcccccEEEEcccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHHcccHHHHHHHHccccEEccccHccccccccEEcccccHHccHHHHHHHHHHHHHcHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccccccccHcccccccccccccccccEEEcccccccEEEEEcccHccHHHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEccccccccccccEEEEEcHHcHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MEEALRQIActssagmdtqrRYSAglgfvnkqshehqhhggfvemkkKEKVGSIKKKLKLLKGLSKDLSTfsqmgfavdqdQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKANKLKAKIQssacessdssdseceeEEVVQMIDGTQVEDGLLNlmpvirseesspspnvvgtddgmTKRVEVcmgnkckksgggaLFEEFQRAMGAEGDVVACkcmgkcrdgpnvrlfhsdayhhltppnplciGVALEDVGAIVGNLFTQGSKSLELGLR
Flexible Loop (DISEMBL)
MEEALRQIactssagmdtqRRYSAGLGFVNKQShehqhhggfvemkkkekVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLkrkrkqekanklkakiqssacessdssdsecEEEEVVQMIDGTQVEDGLLNLMPVirseesspspnvvgtddgMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNlftqgskslelglr
Low Complexity Region (SEG)
MEEALRQIACTSSAGMDTQRRYSAGLGFVNKQSHEHQHHGGFVEMkkkekvgsikkklkllkglskdlsTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMkqleqlkteekklkrkrkqekanklkakIQssacessdssdseceeeeVVQMIDGTQVEDGLLNLMPVIRSEESSPSPNVVGTDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQGSKSLELGLR
Disordered region (IsUnstruct)
*********************************************************LKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKM********************************************************************DGLLNLM***********************RVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFT***********
Disordered Region (DISOPRED)
*****R**ACTSS*************GFVNKQSHEHQHH*******************************FSQMGFAVDQDQNLLAQVRGKMISEAAEVL*****************************************************************************************KRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQGSK***LGL*
Disordered Region (DISEMBL)
MEEALRQIACTSSAGMDTQRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEE**************************************VVQMIDGTQVEDGLLNLMPVIRS**********GTDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQGSKSLELGLR
Disordered Region (DISPRO)
*********C*SSA**DTQRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQE******************************************LNLMPVIRS*ESSPSPNVVGTDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQ**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEALRQIACTSSAGMDTQRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSDSSDSECEEEEVVQMIDGTQVEDGLLNLMPVIRSEESSPSPNVVGTDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQGSKSLELGLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
225432200	362	PREDICTED: uncharacterized protein LOC10	0.745	0.582	0.457	3e-37
297736822	370	unnamed protein product [Vitis vinifera]	0.636	0.486	0.517	1e-31
297847084	360	predicted protein [Arabidopsis lyrata su	0.703	0.552	0.375	3e-30
388499568	334	unknown [Lotus japonicus]	0.929	0.787	0.344	1e-27
255556610	332	soluble diacylglycerol acyltransferase [	0.872	0.743	0.375	1e-24
224064764	350	predicted protein [Populus trichocarpa]	0.745	0.602	0.337	2e-24
224106990	237	predicted protein [Populus trichocarpa]	0.289	0.345	0.643	1e-23
449498769	330	PREDICTED: uncharacterized protein LOC10	0.332	0.284	0.535	4e-21
449459794	331	PREDICTED: uncharacterized protein LOC10	0.332	0.283	0.535	5e-21
110743458	246	hypothetical protein [Arabidopsis thalia	0.286	0.329	0.616	9e-21

>gi|225432200|ref|XP_002269582.1| PREDICTED: uncharacterized protein LOC100242564 [Vitis vinifera] gi|147865786|emb|CAN81152.1| hypothetical protein VITISV_020818 [Vitis vinifera]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 146/258 (56%), Gaps = 47/258 (18%)

Query: 67  DLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKANKL 126
           DLS FS +GF VD D+ L  +V+GKMISEAAEVL+KQL+Q++ EEK+LKR+RK+EKA KL
Sbjct: 104 DLSLFSDLGFGVDSDEGLFGEVKGKMISEAAEVLLKQLQQMRAEEKELKRRRKEEKA-KL 162

Query: 127 KAKIQSS--ACESSDSSDSECEEEEVVQMI---DGTQVEDGLLNLMPVIRSEESSPSPNV 181
           KA    +   CESS S  S+ E  EVV M     G  VE       PVI+  +    P++
Sbjct: 163 KATRMETGVVCESSSSESSDSECGEVVDMTHLRSGAVVEPIKDESQPVIQEAKGLEEPSL 222

Query: 182 ---------------------VGTDD--------GMTKRVEVCMGNKCKKSGGGALFEEF 212
                                V  D            KR+EVCMG KCKKSG  AL EEF
Sbjct: 223 LQPVTTTLKGECCTAVNTATSVAVDQNEKTQVMGAGAKRIEVCMGGKCKKSGAEALLEEF 282

Query: 213 QRAMGAEGDVVACKCMGKCRDGPNVRLFHS----------DAYHHLTPPNPLCIGVALED 262
           +R +G EG VV CKCMGKCR GPNVR+ +S          D+    TP NPLC+GV L+D
Sbjct: 283 ERVVGVEGAVVGCKCMGKCRVGPNVRVLNSIEGVEAEGMDDSVR--TPANPLCVGVGLQD 340

Query: 263 VGAIVGNLFTQGSKSLEL 280
           VG IV N F +  + + L
Sbjct: 341 VGIIVSNFFGETHEDIGL 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736822|emb|CBI26023.3| unnamed protein product [Vitis vinifera]

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 125/199 (62%), Gaps = 19/199 (9%)

Query: 67  DLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKANKL 126
           DLS FS +GF VD D+ L  +V+GKMISEAAEVL+KQL+Q++ EEK+LKR+RK+EKA KL
Sbjct: 104 DLSLFSDLGFGVDSDEGLFGEVKGKMISEAAEVLLKQLQQMRAEEKELKRRRKEEKA-KL 162

Query: 127 KAKIQSS--ACESSDSSDSECEEEEVVQMI---DGTQVEDGLLNLMPVIRSEESSPSPNV 181
           KA    +   CESS S  S+ E  EVV M     G  VE       PVI+  +    P +
Sbjct: 163 KATRMETGVVCESSSSESSDSECGEVVDMTHLRSGAVVEPIKDESQPVIQEAKGLEEP-M 221

Query: 182 VGTDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFH 241
           +G      KR+EVCMG KCKKSG  AL EEF+R +G EG VV CKCMGKCR GPNVR+ +
Sbjct: 222 MGAG---AKRIEVCMGGKCKKSGAEALLEEFERVVGVEGAVVGCKCMGKCRVGPNVRVLN 278

Query: 242 S---------DAYHHLTPP 251
           S         D  H L  P
Sbjct: 279 SIEGKPMKILDCLHQLRRP 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847084|ref|XP_002891423.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337265|gb|EFH67682.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/261 (37%), Positives = 141/261 (54%), Gaps = 62/261 (23%)

Query: 65  SKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKA- 123
           SK+L+ FS +GF +D +  L+ +++ K ISEA E+L+KQLEQLK EEK LK++RK+EKA 
Sbjct: 94  SKNLNMFSSIGFGLDPEAGLVGEIQTKTISEATEILVKQLEQLKAEEKLLKKQRKEEKAK 153

Query: 124 -------------------------------------NKLKAKIQSSACESSDSSDSECE 146
                                                NK K  ++    E++ ++    +
Sbjct: 154 AKAMKKMTEMDSESSSSSESSDSDRDKGKVVDMSSLRNKTKPVLEPLQPEATVATLPRIQ 213

Query: 147 EE--------EVVQM-IDGTQVEDGLLNLMPVIRSEESSPSPNVVGTDDGMTKRVEVCMG 197
           E+        E +Q+ +  + V   + N +  +++ E+    +VVG      KRVEVCMG
Sbjct: 214 EDAQSCKNTSEALQIALQTSTVFPSMPNPVQTLKTVEAV---SVVGLP---LKRVEVCMG 267

Query: 198 NKCKKSGGGALFEEFQRAM-GAEGDVVACKCMGKCRDGPNVRLFH------SDAYHHLTP 250
            KCKKSGG  L +EFQRAM G +G  VACKCMGKCRDGPNVR+ +      +D+    TP
Sbjct: 268 GKCKKSGGALLLDEFQRAMTGFQGSAVACKCMGKCRDGPNVRVVNETDSVMTDSVR--TP 325

Query: 251 PNPLCIGVALEDVGAIVGNLF 271
              +C+GV L+DV  IV + F
Sbjct: 326 SKTVCVGVGLQDVETIVTSFF 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499568|gb|AFK37850.1| unknown [Lotus japonicus]

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/331 (34%), Positives = 163/331 (49%), Gaps = 68/331 (20%)

Query: 5   LRQIACTSSAGMDTQRR----YSA--------GLGFVNKQSHEHQHHGGFVEMKKKEK-- 50
           LRQ+   + AG +   R    ++A        G GF +      + H  + + KKK K  
Sbjct: 8   LRQLTYVTGAGTNAHSRGARVWAARPTARVVMGSGFSD------EGHLQYYQDKKKGKPV 61

Query: 51  VGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQN-LLAQVRGKMISEAAEVLMKQLEQLKT 109
           V + K K+KLLK +SK +S F ++GFA+D +Q  LL  ++  + S++ E L+K+LE+L+ 
Sbjct: 62  VLTAKNKVKLLKRVSKGMSLFDELGFALDPNQRALLNDLQTNLTSDSGEGLLKELEKLRA 121

Query: 110 EEKKLKRKRKQEKANKLKAKIQSSACESSDSSDSECEE------------EEVVQM---- 153
           EEK+LKRKRK EK    KAK+++S  ++    +S                +EVV M    
Sbjct: 122 EEKELKRKRKDEK----KAKLKASKMKTGPDCESSSSSSSESSESSASECDEVVDMNTFR 177

Query: 154 --------IDGTQVEDGLLNLMP--VIRSEESSPSPNV------VGTDDGMTKRVEVCMG 197
                           G   L+P   +  + S  S +V       G      KR+EVCMG
Sbjct: 178 GGVAVAPAPPPALPPSGPAALLPETFVGGDVSIGSVSVGLKNENHGVSTAPQKRIEVCMG 237

Query: 198 NKCKKSGGGALFEEFQ-RAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHHL-------- 248
           NKCKKSG  AL ++F+       G VV CKCMGKC+  PNVR+  +   H L        
Sbjct: 238 NKCKKSGAAALMQQFESVVGVEGGAVVGCKCMGKCKSAPNVRI-QNAVDHELAEGLNDSV 296

Query: 249 -TPPNPLCIGVALEDVGAIVGNLFTQGSKSL 278
             P NPLCIGV LEDV A+V     +  + +
Sbjct: 297 KVPANPLCIGVGLEDVDAVVARFLGENYQDM 327

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556610|ref|XP_002519339.1| soluble diacylglycerol acyltransferase [Ricinus communis] gi|223541654|gb|EEF43203.1| soluble diacylglycerol acyltransferase [Ricinus communis]

 Score =  119 bits (298), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 113/301 (37%), Positives = 145/301 (48%), Gaps = 54/301 (17%)

Query: 19  QRRYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAV 78
            R   + LGF +    ++   GGFV      K    KK   +   LS+D S F       
Sbjct: 36  HRVSDSCLGFRDNGHLQYYCQGGFVRCGGGNKKSIKKKLKLVKS-LSEDFSMFPH----- 89

Query: 79  DQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKANKLKAKIQSSACESS 138
             +  LL Q +   + EAA+ LMKQL++L+ +EK+LKR++KQEK  KLK++  SS+   S
Sbjct: 90  --NNALLHQPQSISLQEAAQGLMKQLQELRAKEKELKRQKKQEKKAKLKSESSSSSSSES 147

Query: 139 DSSDSECEEEEVVQMIDGTQVEDGLLNLMPVIRSEESSPSP------------------- 179
            S     E   + +  D T +   L  L P+     +S  P                   
Sbjct: 148 SSDSERGEVIHMSRFRDET-IPAALPQLHPLTHHHPTSTLPVSPTQECNPMDYTSTHHEK 206

Query: 180 -----------NVVG----------TDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGA 218
                      N VG          T++    R+EVCMGNKCKKSGG AL EEFQR +G 
Sbjct: 207 RCCVGPSTGADNAVGDCCNDRNSSMTEELSANRIEVCMGNKCKKSGGAALLEEFQRVLGV 266

Query: 219 EGDVVACKCMGKCRDGPNVRLFHSDAYHHL-----TPPNPLCIGVALEDVGAIVGNLFTQ 273
           E  VV CKCMG CRDGPNVR+ +S    +      TP NPLCIGV LEDV  IV N F  
Sbjct: 267 EAAVVGCKCMGNCRDGPNVRVRNSVQDRNTDDSVRTPSNPLCIGVGLEDVDVIVANFFGL 326

Query: 274 G 274
           G
Sbjct: 327 G 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064764|ref|XP_002301551.1| predicted protein [Populus trichocarpa] gi|222843277|gb|EEE80824.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 123/252 (48%), Gaps = 41/252 (16%)

Query: 65  SKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVLMKQLEQLKTEEKKLKRKRKQEKAN 124
           S+DL  FS      + + +L+ +V+ KMISEA E+L+ +L+  + E K+ KRKR+ E A 
Sbjct: 89  SRDLPIFSYAVCGEEGNGSLIGEVKEKMISEATEILLAELQNRRLERKEQKRKRRDESAT 148

Query: 125 KLKAK-------------------------------IQSSACESSDSSDSECEEEEVVQM 153
            +K +                               + S     S + +   E E    +
Sbjct: 149 LIKNRPRCDSGSSSSSSSSSSGSSSPESSDSDCSREVVSMKQMRSKALNPFIEIESAKAI 208

Query: 154 IDGTQVEDGLLNLMPVIRSEESSPSPNVVGTDDGMT-KRVEVCMGNKCKKSGGGALFEEF 212
            + TQ ED   + +   +S +SSP     G   G + +++E+CMG KC+K G  AL EEF
Sbjct: 209 KEATQ-EDQHRDTVSGAKSNDSSPQNLSDGVQIGASGRKIEICMGGKCRKLGAAALLEEF 267

Query: 213 QRAMGAEGDVVACKCMGKCRDGPNVRLFHSDAYHH-------LTPP-NPLCIGVALEDVG 264
           +R +G E  VV CKCMGKC  GPNVR+F+    +        + PP N LCIGV L+DVG
Sbjct: 268 ERKIGMESAVVGCKCMGKCMKGPNVRVFNCTVENEDMRVEDSIKPPLNLLCIGVGLKDVG 327

Query: 265 AIVGNLFTQGSK 276
            I   L     K
Sbjct: 328 IISRQLLGNDGK 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106990|ref|XP_002314335.1| predicted protein [Populus trichocarpa] gi|222863375|gb|EEF00506.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 62/87 (71%), Gaps = 5/87 (5%)

Query: 190 KRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDGPNVRLFHS-----DA 244
           KR+EVCMGNKCKKSGG AL EEF++A+G  G VV CKCMGKCRDGPNVR+  S     D 
Sbjct: 141 KRIEVCMGNKCKKSGGVALLEEFEKAVGIGGAVVGCKCMGKCRDGPNVRILKSGNEGVDD 200

Query: 245 YHHLTPPNPLCIGVALEDVGAIVGNLF 271
              +   NPLCIGV LEDV  IV N F
Sbjct: 201 SVRIPAANPLCIGVGLEDVDVIVANFF 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498769|ref|XP_004160628.1| PREDICTED: uncharacterized protein LOC101231460 [Cucumis sativus]

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 62/99 (62%), Gaps = 5/99 (5%)

Query: 175 SSPSPNVVGTDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDG 234
           +S + N+  T      R++VCMGNKCKK+G  AL EEF R MG E  V  CKCMGKCRDG
Sbjct: 223 NSKTENIAVTQSTSVGRIQVCMGNKCKKAGAAALMEEFGRVMGDEAAVCGCKCMGKCRDG 282

Query: 235 PNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQ 273
           PNVR+  S     +   NPLCIGV +EDVG IV     Q
Sbjct: 283 PNVRVLGS-----MEMQNPLCIGVGVEDVGRIVAEYLGQ 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459794|ref|XP_004147631.1| PREDICTED: uncharacterized protein LOC101205287 [Cucumis sativus]

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 62/99 (62%), Gaps = 5/99 (5%)

Query: 175 SSPSPNVVGTDDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGDVVACKCMGKCRDG 234
           +S + N+  T      R++VCMGNKCKK+G  AL EEF R MG E  V  CKCMGKCRDG
Sbjct: 224 NSKTENIAVTQSTSVGRIQVCMGNKCKKAGAAALMEEFGRVMGDEAAVCGCKCMGKCRDG 283

Query: 235 PNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQ 273
           PNVR+  S     +   NPLCIGV +EDVG IV     Q
Sbjct: 284 PNVRVLGS-----MEMQNPLCIGVGVEDVGRIVAEYLGQ 317

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110743458|dbj|BAE99615.1| hypothetical protein [Arabidopsis thaliana]

 Score =  106 bits (265), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 60/86 (69%), Gaps = 5/86 (5%)

Query: 191 RVEVCMGNKCKKSGGGALFEEFQRAM-GAEGDVVACKCMGKCRDGPNVRLF-HSDAYHH- 247
           RVEVCMG KCK+SGG  L +EFQRAM G EG  VACKCMGKCRDGPNVR+   +DA    
Sbjct: 147 RVEVCMGGKCKRSGGALLLDEFQRAMTGFEGSAVACKCMGKCRDGPNVRVVKETDAVMTD 206

Query: 248 --LTPPNPLCIGVALEDVGAIVGNLF 271
              TP   LC+GV L+DV  IV + F
Sbjct: 207 SVRTPSKTLCVGVGLQDVETIVTSFF 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2007750	285	DGAT3 "AT1G48300" [Arabidopsis	0.321	0.319	0.572	2.5e-28

TAIR|locus:2007750 DGAT3 "AT1G48300" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 55/96 (57%), Positives = 63/96 (65%)

Query:   191 RVEVCMGNKCKKSGGGALFEEFQRAM-GAEGDVVACKCMGKCRDGPNVRLF-HSDAYHH- 247
             RVEVCMG KCK+SGG  L +EFQRAM G EG  VACKCMGKCRDGPNVR+   +DA    
Sbjct:   186 RVEVCMGGKCKRSGGALLLDEFQRAMTGFEGSAVACKCMGKCRDGPNVRVVKETDAVMTD 245

Query:   248 --LTPPNPLCIGVALEDVGAIVGNLFTQGSKSLELG 281
                TP   LC+GV L+DV  IV + F +      LG
Sbjct:   246 SVRTPSKTLCVGVGLQDVETIVTSFFDEECSREGLG 281

GO:0004144 "diacylglycerol O-acyltransferase activity" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0008152 "metabolic process" evidence=IGI

GO:0019432 "triglyceride biosynthetic process" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
cd02980	77	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2F	4e-11
cd03082	72	cd03082, TRX_Fd_NuoE_W_FDH_beta, TRX-like [2Fe-2S]	7e-04

>gnl|CDD|239278 cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 16/84 (19%)

Query: 190 KRVEVCMGNKCKKSGGGALFEEFQRAMGAEG-----DVVACKCMGKCRDGPNVRLF-HSD 243
             + VC G  C   G   L E  ++ +G  G      V    C+G C   P V ++    
Sbjct: 1   HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGV 60

Query: 244 AYHHLTPPNPLCIGVALEDVGAIV 267
            Y  +TP          EDV  IV
Sbjct: 61  WYGRVTP----------EDVEEIV 74

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers. Length = 77

>gnl|CDD|239380 cd03082, TRX_Fd_NuoE_W_FDH_beta, TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 192 VEVCMGNKCKKSGGGALFEEFQRAMGAEG-DVVACKCMGKCRDGPNVRLFHSDAYHHLTP 250
           V VC    C  +G   L    +  +G EG  VV   C+G+C   P   +         TP
Sbjct: 4   VRVCDSLSCAMAGAEELLAALEAGLGPEGVRVVRAPCVGRCERAPAALVGQ-RPVDGATP 62

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependent oxidation of formate. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
cd03063	92	TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd)	99.75
cd03064	80	TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) fami	99.73
cd02980	77	TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferr	99.72
cd03081	80	TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin	99.71
cd03083	80	TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd)	99.7
PRK07539	154	NADH dehydrogenase subunit E; Validated	99.67
TIGR01958	148	nuoE_fam NADH-quinone oxidoreductase, E subunit. T	99.67
PF01257	145	2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredo	99.67
COG1905	160	NuoE NADH:ubiquinone oxidoreductase 24 kD subunit	99.62
cd03082	72	TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxi	99.62
PRK07571	169	bidirectional hydrogenase complex protein HoxE; Re	99.6
PRK05988	156	formate dehydrogenase subunit gamma; Validated	99.59
cd03062	97	TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) f	99.5
PRK12373	400	NADH dehydrogenase subunit E; Provisional	99.42
KOG3196	233	consensus NADH:ubiquinone oxidoreductase, NDUFV2/2	99.21
COG3411	64	Ferredoxin [Energy production and conversion]	99.12
PF06999	230	Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: I	97.75
PF07845	116	DUF1636: Protein of unknown function (DUF1636); In	97.47
COG5469	143	Predicted metal-binding protein [Function unknown]	96.49
PF07293	78	DUF1450: Protein of unknown function (DUF1450); In	95.1
PRK13669	78	hypothetical protein; Provisional	92.57
KOG3116	177	consensus Predicted C3H1-type Zn-finger protein [G	83.63
PRK13752	144	putative transcriptional regulator MerR; Provision	81.38

>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH

Probab=99.75  E-value=2.3e-18  Score=137.62  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=69.5

Q ss_pred             EEEEecCCcccccchHHHHHHHHHHhcCCC---cEEeecCCCCCCCCCeEEEeCCcccCCCCCCC-CcccCCChhhHHHH
Q 023360          191 RVEVCMGNKCKKSGGGALFEEFQRAMGAEG---DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPN-PLCIGVALEDVGAI  266 (283)
Q Consensus       191 ~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G---tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~g-vlY~~VtpEDV~eI  266 (283)
                      +|+||+||+|.+.||.+|+++|+++++..|   +++.+||+|+|..||+|.|..        |++ ++|.+|+|+||++|
T Consensus         2 ~I~Vc~gT~ciAaGA~~V~~al~~ei~~~gl~v~v~~tGC~G~C~~ePlV~V~~--------p~g~v~Y~~V~~edv~~I   73 (92)
T cd03063           2 RIYVPRDAAALALGADEVAEAIEAEAAARGLAATIVRNGSRGMYWLEPLVEVET--------PGGRVAYGPVTPADVASL   73 (92)
T ss_pred             EEEEeCChhhhhhCHHHHHHHHHHHHHHcCCeEEEEEecCceecCCCCEEEEEe--------CCCcEEEEeCCHHHHHHH
Confidence            599999999999999999999999999877   789999999999999999961        445 89999999999999


Q ss_pred             HHHHHhcC
Q 023360          267 VGNLFTQG  274 (283)
Q Consensus       267 Vee~l~~~  274 (283)
                      |++|+.+.
T Consensus        74 v~~~~~~~   81 (92)
T cd03063          74 LDAGALEG   81 (92)
T ss_pred             HHHHhhcC
Confidence            99998854

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c

>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes

Probab=99.73  E-value=6.1e-18  Score=128.65  Aligned_cols=70  Identities=26%  Similarity=0.573  Sum_probs=63.8

Q ss_pred             CcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccCCC
Q 023360          189 TKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVA  259 (283)
Q Consensus       189 k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~Vt  259 (283)
                      +++|.||+|++|..+||++++++|+++++..       +  ++..++|||.|..||+|.|+           ++||.+||
T Consensus         1 ~~~v~vC~~~~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v~-----------g~~y~~vt   69 (80)
T cd03064           1 KHVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMIN-----------DDVYGRLT   69 (80)
T ss_pred             CEEEEECCCcHHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEEC-----------CEEECCCC
Confidence            5899999999999999999999999999743       2  78999999999999999996           36999999


Q ss_pred             hhhHHHHHHH
Q 023360          260 LEDVGAIVGN  269 (283)
Q Consensus       260 pEDV~eIVee  269 (283)
                      |++|++||++
T Consensus        70 ~~~i~~i~~~   79 (80)
T cd03064          70 PEKVDAILEA   79 (80)
T ss_pred             HHHHHHHHHh
Confidence            9999999975

It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu

>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)

Probab=99.72  E-value=1.5e-17  Score=123.84  Aligned_cols=72  Identities=31%  Similarity=0.573  Sum_probs=66.1

Q ss_pred             cEEEEecCCcccccchHHHHHHHHHHhcCCC-----cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccCCChhhHH
Q 023360          190 KRVEVCMGNKCKKSGGGALFEEFQRAMGAEG-----DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVG  264 (283)
Q Consensus       190 ~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G-----tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~VtpEDV~  264 (283)
                      ++|+||+++.|..+|+.+|+++|+++++..+     ++..++|+|.|..||+|.|+|         ++.||.+|++++++
T Consensus         1 ~~I~VC~~~~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i~~---------~~~~y~~v~~~~~~   71 (77)
T cd02980           1 HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYP---------DGVWYGRVTPEDVE   71 (77)
T ss_pred             CEEEEccCCCcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEEeC---------CCeEEccCCHHHHH
Confidence            5799999999999999999999999998753     889999999999999999985         46799999999999


Q ss_pred             HHHHHH
Q 023360          265 AIVGNL  270 (283)
Q Consensus       265 eIVee~  270 (283)
                      +||++|
T Consensus        72 ~il~~~   77 (77)
T cd02980          72 EIVEEL   77 (77)
T ss_pred             HHHHhC
Confidence            999864

TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.

>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH

Probab=99.71  E-value=1.7e-17  Score=127.53  Aligned_cols=70  Identities=20%  Similarity=0.433  Sum_probs=63.7

Q ss_pred             CcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccCCC
Q 023360          189 TKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVA  259 (283)
Q Consensus       189 k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~Vt  259 (283)
                      +|+|.||+|++|+.+||++|+++|++.|+..       |  +|..++|+|.|..||+|+|++           .||.+++
T Consensus         1 ~~~i~vC~~~~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~~~v~~-----------~~~~~~~   69 (80)
T cd03081           1 RHVLKLCRAEACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMIDG-----------EVHGRVD   69 (80)
T ss_pred             CeEEEEcCChHHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCEEEECC-----------EEECCCC
Confidence            5899999999999999999999999999742       3  899999999999999999964           5788999


Q ss_pred             hhhHHHHHHH
Q 023360          260 LEDVGAIVGN  269 (283)
Q Consensus       260 pEDV~eIVee  269 (283)
                      |++|++||++
T Consensus        70 ~e~i~~il~~   79 (80)
T cd03081          70 PEKFDALLAE   79 (80)
T ss_pred             HHHHHHHHHc
Confidence            9999999975

FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat

>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16

Probab=99.70  E-value=2.4e-17  Score=126.78  Aligned_cols=70  Identities=17%  Similarity=0.339  Sum_probs=63.4

Q ss_pred             CcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccCCC
Q 023360          189 TKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVA  259 (283)
Q Consensus       189 k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~Vt  259 (283)
                      +|+|.||.+++|+++||.+|+++|+++++..       |  ++..++|||.|..||+|+|++           +||.+|+
T Consensus         1 ~~~i~vC~~~~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG~C~~~P~v~V~~-----------~~y~~v~   69 (80)
T cd03083           1 KYRIYLSDSITDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLINN-----------RVFTRLT   69 (80)
T ss_pred             CEEEEEcCChHHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceecCcCCCCeEEECC-----------EEECCCC
Confidence            5899999999999999999999999999743       2  789999999999999999963           5889999


Q ss_pred             hhhHHHHHHH
Q 023360          260 LEDVGAIVGN  269 (283)
Q Consensus       260 pEDV~eIVee  269 (283)
                      |+|+++||+.
T Consensus        70 ~~~v~~iv~~   79 (80)
T cd03083          70 PGRIDQIAEL   79 (80)
T ss_pred             HHHHHHHHhc
Confidence            9999999974

HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved

>PRK07539 NADH dehydrogenase subunit E; Validated

Probab=99.67  E-value=1.1e-16  Score=136.90  Aligned_cols=75  Identities=20%  Similarity=0.513  Sum_probs=67.5

Q ss_pred             CCCCCcEEEEecCCcccccchHHHHHHHHHHhcC-C------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGA-E------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~-~------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      .++++++|.||+|++|+.+||.+|+++|+++++. .      |  ++..++|+|.|+.||+|+|++           .||
T Consensus        70 ~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gPvv~V~~-----------~~y  138 (154)
T PRK07539         70 QPVGRHVIQVCTSTPCWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAPVVMIND-----------DTY  138 (154)
T ss_pred             CCCCCEEEEEcCCchHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCCEEEECC-----------EEe
Confidence            4678999999999999999999999999999983 2      2  789999999999999999984           478


Q ss_pred             cCCChhhHHHHHHHH
Q 023360          256 IGVALEDVGAIVGNL  270 (283)
Q Consensus       256 ~~VtpEDV~eIVee~  270 (283)
                      .+|||++|++||+++
T Consensus       139 ~~vt~e~v~~il~~~  153 (154)
T PRK07539        139 EDLTPEKIDELLDEL  153 (154)
T ss_pred             CCCCHHHHHHHHHhc
Confidence            899999999999864

>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit

Probab=99.67  E-value=1.3e-16  Score=135.44  Aligned_cols=75  Identities=19%  Similarity=0.434  Sum_probs=67.7

Q ss_pred             CCCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      .++++++|.||+|++|+.+||.+|+++|++.|+.+       |  ++..++|+|.|+.||+|+|++           .+|
T Consensus        64 ~p~gk~~I~VC~g~~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~V~~-----------~~y  132 (148)
T TIGR01958        64 EPVGRYHLQVCTNVPCALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMMIND-----------DYY  132 (148)
T ss_pred             CCCCCEEEEEcCCchhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEEECC-----------EEe
Confidence            46789999999999999999999999999999853       2  889999999999999999985           378


Q ss_pred             cCCChhhHHHHHHHH
Q 023360          256 IGVALEDVGAIVGNL  270 (283)
Q Consensus       256 ~~VtpEDV~eIVee~  270 (283)
                      .+|||+++++||+++
T Consensus       133 ~~vt~e~v~~il~~~  147 (148)
T TIGR01958       133 EFLTPEKLDELLERY  147 (148)
T ss_pred             CCCCHHHHHHHHHhc
Confidence            889999999999864

This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.

>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=99.67  E-value=1.1e-16  Score=135.46  Aligned_cols=75  Identities=25%  Similarity=0.524  Sum_probs=65.3

Q ss_pred             CCCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      .+.++++|.||+|++|+.+||.+|+++|++.++.+       |  ++..++|+|.|..||+|+||+           .||
T Consensus        61 ~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~aP~v~V~~-----------~~y  129 (145)
T PF01257_consen   61 EPKGKHHIRVCTGTSCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQAPVVMVDG-----------EWY  129 (145)
T ss_dssp             SS--SEEEEEE-SHHHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGSSEEEECC-----------CEE
T ss_pred             CCCCCcEEEeCCCchHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCCCEEEECC-----------EEE
Confidence            46689999999999999999999999999999632       3  899999999999999999974           478


Q ss_pred             cCCChhhHHHHHHHH
Q 023360          256 IGVALEDVGAIVGNL  270 (283)
Q Consensus       256 ~~VtpEDV~eIVee~  270 (283)
                      .+|||++|++||+++
T Consensus       130 ~~vt~e~v~~il~~l  144 (145)
T PF01257_consen  130 GNVTPEKVDEILEEL  144 (145)
T ss_dssp             ESSSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhc
Confidence            899999999999875

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....

>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]

Probab=99.62  E-value=1e-15  Score=133.33  Aligned_cols=77  Identities=22%  Similarity=0.479  Sum_probs=69.4

Q ss_pred             CCCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      .+.++|+|.||++++|+.+|+++|+++|++.++.+       |  ++.+++|+|+|+.||+|+||++.|+          
T Consensus        73 ~P~Gr~~i~VC~~t~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~ClGaC~~AP~vmind~~~~----------  142 (160)
T COG1905          73 KPVGRHHIRVCTGTACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMINDDVYG----------  142 (160)
T ss_pred             CcCCCeEEEEeCCcHHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeeecccccCCEEEECCchhc----------
Confidence            36789999999999999999999999999999852       3  8999999999999999999988664          


Q ss_pred             cCCChhhHHHHHHHHHh
Q 023360          256 IGVALEDVGAIVGNLFT  272 (283)
Q Consensus       256 ~~VtpEDV~eIVee~l~  272 (283)
                       ++|||.+.+||+.+..
T Consensus       143 -~lt~e~l~eil~~~~~  158 (160)
T COG1905         143 -RLTPEKLEEILEKLKA  158 (160)
T ss_pred             -cCCHHHHHHHHHHHhc
Confidence             5799999999998754

>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens

Probab=99.62  E-value=8.2e-16  Score=116.98  Aligned_cols=69  Identities=28%  Similarity=0.525  Sum_probs=63.0

Q ss_pred             cEEEEecCCcccccchHHHHHHHHHHhcCCC-cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccCCChhhHHHHHH
Q 023360          190 KRVEVCMGNKCKKSGGGALFEEFQRAMGAEG-DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVG  268 (283)
Q Consensus       190 ~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G-tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~VtpEDV~eIVe  268 (283)
                      ++|.||+|++|+.+||.+|+++|++.|+.+. ++..++|||.|+.||+|+||++.           |.++||++|+++++
T Consensus         2 ~~I~vC~~~~C~~~Ga~~l~~~l~~~L~~~~v~l~~~~ClG~C~~gP~v~V~~~~-----------~~~~t~~~i~~~~~   70 (72)
T cd03082           2 LTVRVCDSLSCAMAGAEELLAALEAGLGPEGVRVVRAPCVGRCERAPAALVGQRP-----------VDGATPAAVAAAVE   70 (72)
T ss_pred             eEEEEcCChHHHHCCHHHHHHHHHHHhCCCeEEEEecCcCCccCCCCeEEECCEE-----------eCCcCHHHHHHHHh
Confidence            6899999999999999999999999998766 89999999999999999999764           55779999999986


Q ss_pred             H
Q 023360          269 N  269 (283)
Q Consensus       269 e  269 (283)
                      .
T Consensus        71 ~   71 (72)
T cd03082          71 A   71 (72)
T ss_pred             c
Confidence            3

W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen

>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed

Probab=99.60  E-value=2e-15  Score=132.08  Aligned_cols=76  Identities=22%  Similarity=0.438  Sum_probs=68.4

Q ss_pred             CCCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      .++++|+|.||+|++|+.+||.+|+++|++.|+.+       |  ++..+.|+|.|+.||+|+||++.           |
T Consensus        84 ~P~Gk~~I~VC~g~aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C~~AP~~~Vn~~~-----------~  152 (169)
T PRK07571         84 KPSGEHTCVVCTGTACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIAPAVVFDGKV-----------A  152 (169)
T ss_pred             CCCCCEEEEEcCChHHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCccCCCCeEEECCEE-----------e
Confidence            35699999999999999999999999999999853       3  89999999999999999999764           5


Q ss_pred             cCCChhhHHHHHHHHH
Q 023360          256 IGVALEDVGAIVGNLF  271 (283)
Q Consensus       256 ~~VtpEDV~eIVee~l  271 (283)
                      .++|++++++||++|.
T Consensus       153 ~~lt~e~v~~il~~~~  168 (169)
T PRK07571        153 GKQTPESVLEKVQGWL  168 (169)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            6789999999999873

>PRK05988 formate dehydrogenase subunit gamma; Validated

Probab=99.59  E-value=2.9e-15  Score=129.25  Aligned_cols=76  Identities=18%  Similarity=0.349  Sum_probs=68.3

Q ss_pred             CCCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      .++++|+|.||+|++|+.+||.+|+++|+++|+.+       |  ++..+.|+|.|+.||+|+||++.           |
T Consensus        71 ~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP~~~in~~~-----------~  139 (156)
T PRK05988         71 HPPGRHVLKLCRAEACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSPAAMLDGEV-----------H  139 (156)
T ss_pred             CCCCCEEEEEeCCchhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEECCEE-----------e
Confidence            46799999999999999999999999999999853       3  89999999999999999998754           5


Q ss_pred             cCCChhhHHHHHHHHH
Q 023360          256 IGVALEDVGAIVGNLF  271 (283)
Q Consensus       256 ~~VtpEDV~eIVee~l  271 (283)
                      .++|++++++||+++.
T Consensus       140 ~~lt~~~~~~il~~~~  155 (156)
T PRK05988        140 GRLDPQRLDALLAEAR  155 (156)
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            6789999999998763

>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity

Probab=99.50  E-value=6e-14  Score=111.86  Aligned_cols=80  Identities=24%  Similarity=0.292  Sum_probs=68.4

Q ss_pred             cEEEEecC----CcccccchHHHHHHHHHHhcCCC----cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccCCChh
Q 023360          190 KRVEVCMG----NKCKKSGGGALFEEFQRAMGAEG----DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALE  261 (283)
Q Consensus       190 ~~I~VC~G----tsC~~~GA~~VLeaLeeeLg~~G----tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~VtpE  261 (283)
                      .+|+||++    ..|...| ..++++|++++...|    .+..++|+|.|..||||.|+|..       +++||..|+|+
T Consensus         2 ~~ilVCth~rrd~~C~~~g-~~l~~~l~~~l~~~~~~~v~v~~~~clG~c~~gp~vvvyP~~-------~g~wy~~v~p~   73 (97)
T cd03062           2 PLVLVCTHGKRDKRCGICG-PPLAAELRAELPEHGPGGVRVWEVSHVGGHKFAGNVIIYPKG-------DGIWYGRVTPE   73 (97)
T ss_pred             CEEEEeCCCCCCcChhhcC-HHHHHHHHHHHHHhCCCceEEEeCCcCCccCcCCEEEEEeCC-------CeeEEeecCHH
Confidence            57999995    6798888 689999999997543    78999999999999999998420       68999999999


Q ss_pred             hHHHHHHHHHhcCCcc
Q 023360          262 DVGAIVGNLFTQGSKS  277 (283)
Q Consensus       262 DV~eIVee~l~~~~~~  277 (283)
                      ||++||++|+..+..-
T Consensus        74 ~v~~Iv~~hl~~g~~v   89 (97)
T cd03062          74 HVPPIVDRLILGGKII   89 (97)
T ss_pred             HHHHHHHHHhcCCcCC
Confidence            9999999999875543

The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.

>PRK12373 NADH dehydrogenase subunit E; Provisional

Probab=99.42  E-value=3.5e-13  Score=131.50  Aligned_cols=79  Identities=20%  Similarity=0.369  Sum_probs=69.7

Q ss_pred             CCCCC-cEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCc
Q 023360          185 DDGMT-KRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPL  254 (283)
Q Consensus       185 ~~~~k-~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvl  254 (283)
                      .+.++ ++|.||++++|+.+|+.+|+++|++.|++.       |  ++..+.|||.|.+||+|+||++           +
T Consensus        85 ~P~Gk~~~I~VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCLGaC~~APv~~Ind~-----------~  153 (400)
T PRK12373         85 QPVGTRAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECLGACVNAPMVQIGKD-----------Y  153 (400)
T ss_pred             cCCCCceEEEEcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEECCE-----------E
Confidence            35676 899999999999999999999999999864       3  8999999999999999999875           4


Q ss_pred             ccCCChhhHHHHHHHHHhcC
Q 023360          255 CIGVALEDVGAIVGNLFTQG  274 (283)
Q Consensus       255 Y~~VtpEDV~eIVee~l~~~  274 (283)
                      |.++|++++.+||+++....
T Consensus       154 y~~LTpe~v~~IL~~l~ag~  173 (400)
T PRK12373        154 YEDLTPERLEEIIDAFAAGK  173 (400)
T ss_pred             eCCCCHHHHHHHHHHHhCCC
Confidence            56789999999999886544

>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]

Probab=99.21  E-value=2.5e-11  Score=109.59  Aligned_cols=83  Identities=17%  Similarity=0.374  Sum_probs=72.8

Q ss_pred             CCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-C--------cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCccc
Q 023360          186 DGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-G--------DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCI  256 (283)
Q Consensus       186 ~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-G--------tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~  256 (283)
                      .+++++|.||+.+.|..+|++++++++.+.++.. |        +|..++|||+|-+||.|.|+++.           |.
T Consensus       110 p~gKy~v~VC~ttpC~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvnaPmi~IND~y-----------ye  178 (233)
T KOG3196|consen  110 PVGKYHVQVCTTTPCMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECLGACVNAPMIAINDDY-----------YE  178 (233)
T ss_pred             CCCCceEEEecCcHHhhhccHHHHHHHHHHhCccccccccccceeeecchhhhhhccCceeeecchh-----------hc
Confidence            6899999999999999999999999999999873 2        99999999999999999999864           56


Q ss_pred             CCChhhHHHHHHHHHhcCCcccc
Q 023360          257 GVALEDVGAIVGNLFTQGSKSLE  279 (283)
Q Consensus       257 ~VtpEDV~eIVee~l~~~~~~~~  279 (283)
                      .+|++|+.+|++.+.....+--|
T Consensus       179 dlt~k~l~eIle~L~~~k~pp~G  201 (233)
T KOG3196|consen  179 DLTPKKLVEILEDLKAGKKPPAG  201 (233)
T ss_pred             cCCHHHHHHHHHHHhcCCCCCCC
Confidence            78999999999988766544433

>COG3411 Ferredoxin [Energy production and conversion]

Probab=99.12  E-value=5.3e-11  Score=90.16  Aligned_cols=46  Identities=30%  Similarity=0.569  Sum_probs=41.3

Q ss_pred             cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccCCChhhHHHHHHHHHhcCC
Q 023360          221 DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQGS  275 (283)
Q Consensus       221 tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~VtpEDV~eIVee~l~~~~  275 (283)
                      .+..++|||.|..||+|.|+         |+++||.+|+|+|+++||++|+.++-
T Consensus         4 ~~t~tgCl~~C~~gPvl~vY---------pegvWY~~V~p~~a~rIv~~hl~~Gr   49 (64)
T COG3411           4 RVTRTGCLGVCQDGPVLVVY---------PEGVWYTRVDPEDARRIVQSHLLGGR   49 (64)
T ss_pred             EEeecchhhhhccCCEEEEe---------cCCeeEeccCHHHHHHHHHHHHhCCC
Confidence            46789999999999999998         46799999999999999999987654

>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity []

Probab=97.75  E-value=9.1e-05  Score=66.08  Aligned_cols=83  Identities=23%  Similarity=0.317  Sum_probs=68.5

Q ss_pred             CCCcEEEEecC----CcccccchHHHHHHHHHHhcCCC----cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccCC
Q 023360          187 GMTKRVEVCMG----NKCKKSGGGALFEEFQRAMGAEG----DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIGV  258 (283)
Q Consensus       187 ~~k~~I~VC~G----tsC~~~GA~~VLeaLeeeLg~~G----tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~V  258 (283)
                      ..+..|+||+.    ..|... +..|+++|++.+...+    .|-.+..+|-+.-+|||+|+..     ..|.++||..|
T Consensus       130 ~~~~~iLVCtHg~RD~rCg~~-Gp~l~~~l~~~~~~~~l~~~~V~~iSHiGGHkfAgNvIiy~~-----~~p~g~wyGrv  203 (230)
T PF06999_consen  130 PDKPLILVCTHGKRDKRCGIL-GPPLARELEKELRERGLSRDRVWEISHIGGHKFAGNVIIYSK-----PKPDGIWYGRV  203 (230)
T ss_pred             CCCCEEEEcCCCCcCCchhcc-cHHHHHHHHHHhhhcCCccceEEEecccccceecCeEEEEec-----CCCcEEEEEee
Confidence            46788999995    578877 5678899999998765    3889999999999999999921     12678999999


Q ss_pred             ChhhHHHHHHHHHhcCC
Q 023360          259 ALEDVGAIVGNLFTQGS  275 (283)
Q Consensus       259 tpEDV~eIVee~l~~~~  275 (283)
                      +|++|+.||++.+.++.
T Consensus       204 ~p~~v~~iv~~t~~~g~  220 (230)
T PF06999_consen  204 TPEDVEGIVDATILDGK  220 (230)
T ss_pred             CHHHHHHHHHHHHhCCc
Confidence            99999999998555543

>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins

Probab=97.47  E-value=0.00022  Score=59.66  Aligned_cols=70  Identities=26%  Similarity=0.453  Sum_probs=55.4

Q ss_pred             EEEecCCccccc---------chHHHHHHHHHHhcCC----C-cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcccC
Q 023360          192 VEVCMGNKCKKS---------GGGALFEEFQRAMGAE----G-DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCIG  257 (283)
Q Consensus       192 I~VC~GtsC~~~---------GA~~VLeaLeeeLg~~----G-tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~~  257 (283)
                      |.||  ++|...         +++.++++|++.+...    + +|.++.||..|..+-+|-+....-      -.-+|.+
T Consensus         1 l~VC--~tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~C~r~CtVA~~~~gK------~tYlfGd   72 (116)
T PF07845_consen    1 LFVC--TTCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSACDRPCTVALQAPGK------WTYLFGD   72 (116)
T ss_pred             CEEe--CCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhcCCCceEEEEEcCCC------cEEEEec
Confidence            4677  466654         8999999999998654    2 899999999999999999874321      1247889


Q ss_pred             CCh-hhHHHHHHH
Q 023360          258 VAL-EDVGAIVGN  269 (283)
Q Consensus       258 Vtp-EDV~eIVee  269 (283)
                      ++| ++++.|++-
T Consensus        73 l~p~~~a~~il~~   85 (116)
T PF07845_consen   73 LDPDEDAEDILAF   85 (116)
T ss_pred             CCcccCHHHHHHH
Confidence            999 899999983

The region in question is approximately 130 amino acids long.

>COG5469 Predicted metal-binding protein [Function unknown]

Probab=96.49  E-value=0.0064  Score=52.77  Aligned_cols=74  Identities=19%  Similarity=0.407  Sum_probs=58.2

Q ss_pred             CCCCCcEEEEecCCcccc----------cchHHHHHHHHHHhcCCC-----cEEeecCCCCCCCCCeEEEeCCcccCCCC
Q 023360          185 DDGMTKRVEVCMGNKCKK----------SGGGALFEEFQRAMGAEG-----DVVACKCMGKCRDGPNVRLFHSDAYHHLT  249 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~----------~GA~~VLeaLeeeLg~~G-----tV~~tgCLG~C~~GPnV~V~~e~~~~V~~  249 (283)
                      ....+|++.||.  +|+.          .++..+++.|++......     +|.+++||..|..|-+|.+.+.       
T Consensus        13 ~~~~~htlfVCk--sC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~-------   83 (143)
T COG5469          13 NGMPKHTLFVCK--SCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGP-------   83 (143)
T ss_pred             cccCceEEEEec--cccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecC-------
Confidence            456789999995  5543          467889999987664432     8999999999999998887643       


Q ss_pred             CCCC--cccCCChhh-HHHHHH
Q 023360          250 PPNP--LCIGVALED-VGAIVG  268 (283)
Q Consensus       250 P~gv--lY~~VtpED-V~eIVe  268 (283)
                       +++  +|.+++|+| ..+||+
T Consensus        84 -~k~sYLFgdL~p~d~a~dLl~  104 (143)
T COG5469          84 -GKPSYLFGDLTPDDSASDLLE  104 (143)
T ss_pred             -CCceEEEccCCccccHHHHHH
Confidence             443  677999999 888987

>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families

Probab=95.10  E-value=0.076  Score=41.90  Aligned_cols=69  Identities=17%  Similarity=0.338  Sum_probs=52.1

Q ss_pred             cEEEEecCCcccccchHHHHHHHHHHhcCCC-cEEeecCCCCC---CCCCeEEEeCCcccCCCCCCCCcccCCChhhHHH
Q 023360          190 KRVEVCMGNKCKKSGGGALFEEFQRAMGAEG-DVVACKCMGKC---RDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGA  265 (283)
Q Consensus       190 ~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G-tV~~tgCLG~C---~~GPnV~V~~e~~~~V~~P~gvlY~~VtpEDV~e  265 (283)
                      -.|.+|.+  ....|++.+++.|++.   .+ .+...||++.|   ...|=..||++..           ..-|+|++-+
T Consensus         3 piVefC~~--Nl~~g~~~~~~~Le~~---p~~~Vie~gCl~~Cg~C~~~pFAlVnG~~V-----------~A~t~eeL~~   66 (78)
T PF07293_consen    3 PIVEFCVS--NLASGTDQVYEKLEKD---PDIDVIEYGCLSYCGPCAKKPFALVNGEIV-----------AAETAEELLE   66 (78)
T ss_pred             ceEEEccc--CchhhhHHHHHHHhcC---CCccEEEcChhhhCcCCCCCccEEECCEEE-----------ecCCHHHHHH
Confidence            45889965  4567999999999864   33 78899999877   4678888988754           3458888777


Q ss_pred             HHHHHHhcC
Q 023360          266 IVGNLFTQG  274 (283)
Q Consensus       266 IVee~l~~~  274 (283)
                      -|.+++.++
T Consensus        67 kI~~~i~e~   75 (78)
T PF07293_consen   67 KIKEKIEEN   75 (78)
T ss_pred             HHHHHHhcc
Confidence            777777664

Members contain four highly conserved cysteine residues and their function is unknown.

>PRK13669 hypothetical protein; Provisional

Probab=92.57  E-value=0.35  Score=38.35  Aligned_cols=69  Identities=25%  Similarity=0.408  Sum_probs=50.1

Q ss_pred             cEEEEecCCcccccchHHHHHHHHHHhcCCC-cEEeecCCCCC---CCCCeEEEeCCcccCCCCCCCCcccCCChhhHHH
Q 023360          190 KRVEVCMGNKCKKSGGGALFEEFQRAMGAEG-DVVACKCMGKC---RDGPNVRLFHSDAYHHLTPPNPLCIGVALEDVGA  265 (283)
Q Consensus       190 ~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~G-tV~~tgCLG~C---~~GPnV~V~~e~~~~V~~P~gvlY~~VtpEDV~e  265 (283)
                      -.|.+|.+.-  ..|++.+++.|++   ..+ .|...||++.|   ..+|=..|+++...           .-|||++-+
T Consensus         3 piVEfC~sNl--~~G~~~~~~~Le~---dP~~dVie~gCls~CG~C~~~~FAlVng~~V~-----------a~t~eeL~~   66 (78)
T PRK13669          3 PIVEFCVSNL--ASGSQAAFEKLEK---DPNLDVLEYGCLGYCGICSEGLFALVNGEVVE-----------GETPEELVE   66 (78)
T ss_pred             ceeeehhcch--hhhHHHHHHHHHh---CCCceEEEcchhhhCcCcccCceEEECCeEee-----------cCCHHHHHH
Confidence            3588898663  5788888887754   222 78899999776   56788899987643           457887777


Q ss_pred             HHHHHHhcC
Q 023360          266 IVGNLFTQG  274 (283)
Q Consensus       266 IVee~l~~~  274 (283)
                      -|..++.++
T Consensus        67 kI~~~i~e~   75 (78)
T PRK13669         67 NIYAHLEEN   75 (78)
T ss_pred             HHHHHHhhc
Confidence            777777663

>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]

Probab=83.63  E-value=0.72  Score=41.11  Aligned_cols=13  Identities=15%  Similarity=0.028  Sum_probs=10.4

Q ss_pred             CCCcccccccccc
Q 023360           35 EHQHHGGFVEMKK   47 (283)
Q Consensus        35 d~ghl~yy~~~~~   47 (283)
                      .-||..|-+-.|+
T Consensus        35 q~GHWtYECk~kR   47 (177)
T KOG3116|consen   35 QAGHWTYECKNKR   47 (177)
T ss_pred             hhccceeeecCce
Confidence            3499999887777

>PRK13752 putative transcriptional regulator MerR; Provisional

Probab=81.38  E-value=2.8  Score=35.89  Aligned_cols=85  Identities=18%  Similarity=0.314  Sum_probs=48.1

Q ss_pred             ccccccCccccccCCCCcccccccccccccccchHHHHHHHHhhhcccccccccccccccchhHHHHHHhhhHHHHHHHH
Q 023360           21 RYSAGLGFVNKQSHEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQDQNLLAQVRGKMISEAAEVL  100 (283)
Q Consensus        21 r~~~~~gf~~~~~~d~ghl~yy~~~~~~~~~~~~kkk~kll~~ls~dl~~~~~~g~~~d~~~~l~~~~~~~~~sea~e~l  100 (283)
                      ||----|.+...-.+++..|||...-=        .++++++.       |..+||..+.=..+++........++.++|
T Consensus        25 RyYE~~GLl~p~~r~~~gyR~Y~~~~l--------~rl~~I~~-------lr~~G~sL~eI~~ll~~~~~~~~~~~~~ll   89 (144)
T PRK13752         25 RFYQRKGLLPEPDKPYGSIRRYGEADV--------TRVRFVKS-------AQRLGFSLDEIAELLRLEDGTHCEEASSLA   89 (144)
T ss_pred             HHHHHCCCCCCCccCCCCCeecCHHHH--------HHHHHHHH-------HHHcCCCHHHHHHHHhccCCCCHHHHHHHH
Confidence            444344665443456677799987422        23566665       778888877433444322121124455666


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 023360          101 MKQLEQLKTEEKKLKRKRKQ  120 (283)
Q Consensus       101 ~~~l~~~~~~~k~~k~~~k~  120 (283)
                      -+++++++.+..++.+.+..
T Consensus        90 ~~k~~~l~~~i~~L~~~~~~  109 (144)
T PRK13752         90 EHKLKDVREKMADLARMEAV  109 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            67777777777666555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 50/305 (16%), Positives = 90/305 (29%), Gaps = 96/305 (31%)

Query: 34  HEHQHHGGFVEMKKKEKVGSIKKKLKLLKGLSKDLSTFSQMGFAVDQD-QNLLAQVRGKM 92
           H H HH  F       + G  + +        KD+ +  +  F  + D +++    +  +
Sbjct: 1   HHHHHHMDF-------ETGEHQYQ-------YKDILSVFEDAFVDNFDCKDVQDMPKSIL 46

Query: 93  ISEAAEVLMKQLEQLKTEEKKLKR-----KRKQEKANK-------------LKAKIQSSA 134
             E  E+    +   K       R       KQE+  +             L + I++  
Sbjct: 47  SKE--EI--DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-- 100

Query: 135 CESSDSS-DSECEEEEVVQMIDGTQVEDGLLNLMPVIRSE----------ESSPSPNVVG 183
            E    S  +    E+  ++ +  QV         V R +          E  P+ NV+ 
Sbjct: 101 -EQRQPSMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLKLRQALLELRPAKNVL- 154

Query: 184 TDDGMT---KRV---EVC-----------------MGNKCKKSGGGALFEEFQRAMGAEG 220
             DG+    K     +VC                 + N         + E  Q+ +    
Sbjct: 155 -IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE---TVLEMLQKLL---- 206

Query: 221 DVVACKCMGKCRDGPNVRLFHSDAYHHL-----TPPNPLCIGVALEDV--GAIVGNLFTQ 273
             +      +     N++L        L     + P   C+ V L +V       N F  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAW-NAFNL 264

Query: 274 GSKSL 278
             K L
Sbjct: 265 SCKIL 269

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A Length = 110

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 17/93 (18%)

Query: 189 TKRVEVCMGNKCKKSGGGALFEEFQRAMGAEG------DVVACKCMGKCRDGPNVRLFHS 242
             R        C + G   +F+ F   +  +        +    CM     GP V ++  
Sbjct: 11  QDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPD 70

Query: 243 DA-YHHLTPPNPLCIGVALEDVGAIVGNLFTQG 274
              Y  + P          EDV  IV      G
Sbjct: 71  GVWYGQVKP----------EDVDEIVEKHLKGG 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
2auv_A	85	Potential NAD-reducing hydrogenase subunit; thiore	99.77
1m2d_A	110	[2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2	99.74
3i9v_2	181	NADH-quinone oxidoreductase subunit 2; electron tr	99.68

>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}

Probab=99.77  E-value=1.4e-19  Score=137.91  Aligned_cols=74  Identities=22%  Similarity=0.429  Sum_probs=67.3

Q ss_pred             CCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCccc
Q 023360          186 DGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLCI  256 (283)
Q Consensus       186 ~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY~  256 (283)
                      ++++++|.||+|++|+++||.+|+++|++.++..       +  ++..++|||.|..||+|+|++           .||.
T Consensus         3 p~g~~~I~VC~g~~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~~-----------~~y~   71 (85)
T 2auv_A            3 PKGKYPISVCMGTACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVGE-----------KVYG   71 (85)
T ss_dssp             SCCSBCEECCCCHHHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEGG-----------GCCC
T ss_pred             CCCCEEEEECCCchHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEECC-----------EEEC
Confidence            5679999999999999999999999999999753       2  789999999999999999972           5899


Q ss_pred             CCChhhHHHHHHHH
Q 023360          257 GVALEDVGAIVGNL  270 (283)
Q Consensus       257 ~VtpEDV~eIVee~  270 (283)
                      +|||+||++||++|
T Consensus        72 ~vt~e~v~~il~~~   85 (85)
T 2auv_A           72 NVTPGQVKKILAEY   85 (85)
T ss_dssp             CSSSSHHHHHHHHC
T ss_pred             CCCHHHHHHHHHhC
Confidence            99999999999874

>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A

Probab=99.74  E-value=1.3e-18  Score=138.81  Aligned_cols=79  Identities=25%  Similarity=0.424  Sum_probs=71.3

Q ss_pred             CCcEEEEecC--------CcccccchHHHHHHHHHHhcCC-C-----cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCC
Q 023360          188 MTKRVEVCMG--------NKCKKSGGGALFEEFQRAMGAE-G-----DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNP  253 (283)
Q Consensus       188 ~k~~I~VC~G--------tsC~~~GA~~VLeaLeeeLg~~-G-----tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gv  253 (283)
                      ++++|.||+|        ++|+.+||.+|+++|+++++.. |     +|..++|||.|..||+|.|+|         +++
T Consensus         2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P---------~~~   72 (110)
T 1m2d_A            2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYP---------DGV   72 (110)
T ss_dssp             -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEET---------TTE
T ss_pred             CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEe---------CCE
Confidence            5789999999        8999999999999999999876 3     799999999999999999984         468


Q ss_pred             cccCCChhhHHHHHHHHHhcCC
Q 023360          254 LCIGVALEDVGAIVGNLFTQGS  275 (283)
Q Consensus       254 lY~~VtpEDV~eIVee~l~~~~  275 (283)
                      ||.+|||+||++||++|+.++.
T Consensus        73 ~y~~vt~e~v~~il~~~l~~g~   94 (110)
T 1m2d_A           73 WYGQVKPEDVDEIVEKHLKGGE   94 (110)
T ss_dssp             EECSCCGGGHHHHHHHTTTTSC
T ss_pred             EEecCCHHHHHHHHHHHHHCCc
Confidence            9999999999999999886654

>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*

Probab=99.68  E-value=5.7e-17  Score=141.23  Aligned_cols=77  Identities=22%  Similarity=0.474  Sum_probs=68.6

Q ss_pred             CCCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      .+.++++|.||+|++|+.+||.+|+++|++.|+..       |  ++..++|+|.|+.||+|+|++.          .||
T Consensus        73 ~P~gk~~I~VC~gt~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V~~~----------~~y  142 (181)
T 3i9v_2           73 VPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDE----------PYV  142 (181)
T ss_dssp             SCCCSEEEEEECSHHHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEECSSS----------CCB
T ss_pred             CCCCCEEEEECCCchhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEECCE----------EEE
Confidence            46789999999999999999999999999999853       2  7999999999999999999642          288


Q ss_pred             cCCChhhHHHHHHHHH
Q 023360          256 IGVALEDVGAIVGNLF  271 (283)
Q Consensus       256 ~~VtpEDV~eIVee~l  271 (283)
                      .+|||+||++||+++.
T Consensus       143 ~~vt~e~v~~Il~~l~  158 (181)
T 3i9v_2          143 ECVTRARLEALLAGLR  158 (181)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHH
Confidence            9999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d1m2da_	101	c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin	2e-04

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 17/93 (18%)

Query: 189 TKRVEVCMGNKCKKSGGGALFEEFQRAMGAEGD------VVACKCMGKCRDGPNVRLF-H 241
             R        C + G   +F+ F   +  +        +    CM     GP V ++  
Sbjct: 9   QDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPD 68

Query: 242 SDAYHHLTPPNPLCIGVALEDVGAIVGNLFTQG 274
              Y  + P          EDV  IV      G
Sbjct: 69  GVWYGQVKP----------EDVDEIVEKHLKGG 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1m2da_	101	Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolic	99.74
d2fug21	178	NADH-quinone oxidoreductase chain 2, NQO2 {Thermus	99.49

>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioredoxin-like 2Fe-2S ferredoxin
domain: Thioredoxin-like 2Fe-2S ferredoxin
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.74  E-value=7.4e-19  Score=137.18  Aligned_cols=79  Identities=27%  Similarity=0.468  Sum_probs=70.0

Q ss_pred             cEEEEecCC--------cccccchHHHHHHHHHHhcCC----C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          190 KRVEVCMGN--------KCKKSGGGALFEEFQRAMGAE----G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       190 ~~I~VC~Gt--------sC~~~GA~~VLeaLeeeLg~~----G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      .||+||+++        +|.++||.+|+++|++++...    +  .+..++|+|.|..||+|.|+         |+++||
T Consensus         2 rHi~VC~~~r~~~~~~~~C~~~G~~~v~~~l~~~l~~~~~~~~~v~v~~tgClG~C~~gP~v~i~---------P~~~~Y   72 (101)
T d1m2da_           2 KHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVY---------PDGVWY   72 (101)
T ss_dssp             EEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEE---------TTTEEE
T ss_pred             CEEEEeCCCCCCCCCCCcchhcCHHHHHHHHHHHhhhhcCCCCcEEEEEccCCcccCCCceEEEc---------CCccEE
Confidence            469999986        599999999999999999643    2  88999999999999999997         467999


Q ss_pred             cCCChhhHHHHHHHHHhcCCcc
Q 023360          256 IGVALEDVGAIVGNLFTQGSKS  277 (283)
Q Consensus       256 ~~VtpEDV~eIVee~l~~~~~~  277 (283)
                      .+|+|+||++||++|+.++..-
T Consensus        73 ~~v~~e~v~~Iv~~hl~~g~~v   94 (101)
T d1m2da_          73 GQVKPEDVDEIVEKHLKGGEPV   94 (101)
T ss_dssp             CSCCGGGHHHHHHHTTTTSCCC
T ss_pred             ecCCHHHHHHHHHHHHHCCcCc
Confidence            9999999999999998887543

>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: NQO2-like
domain: NADH-quinone oxidoreductase chain 2, NQO2
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=2.7e-14  Score=122.44  Aligned_cols=79  Identities=20%  Similarity=0.416  Sum_probs=69.1

Q ss_pred             CCCCCcEEEEecCCcccccchHHHHHHHHHHhcCC-------C--cEEeecCCCCCCCCCeEEEeCCcccCCCCCCCCcc
Q 023360          185 DDGMTKRVEVCMGNKCKKSGGGALFEEFQRAMGAE-------G--DVVACKCMGKCRDGPNVRLFHSDAYHHLTPPNPLC  255 (283)
Q Consensus       185 ~~~~k~~I~VC~GtsC~~~GA~~VLeaLeeeLg~~-------G--tV~~tgCLG~C~~GPnV~V~~e~~~~V~~P~gvlY  255 (283)
                      +++++++|.||+|++|+.+||.+|++++++.++++       |  +|..+.|+|.|+.||+|+|+++.|          +
T Consensus        71 ~p~gk~~i~VC~~~~C~~~G~~~l~~~l~~~Lgi~~gett~Dg~ftle~v~ClG~C~~APa~~In~~~y----------~  140 (178)
T d2fug21          71 VPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPY----------V  140 (178)
T ss_dssp             SCCCSEEEEEECSHHHHTTTHHHHHHHHHHHHCCCTTCCCTTSCEEEEEESCCSCTTSSSCEECSSSSB----------C
T ss_pred             cccccceeEecCchhhhhccchhhHHHHHhhcccccccccCCCCEEEEEeeccCccCCCCeEEEcCEEe----------c
Confidence            46789999999999999999999999999999864       2  899999999999999999986533          3


Q ss_pred             cCCChhhHHHHHHHHHhc
Q 023360          256 IGVALEDVGAIVGNLFTQ  273 (283)
Q Consensus       256 ~~VtpEDV~eIVee~l~~  273 (283)
                      .++||+++++||+.+...
T Consensus       141 ~~lt~e~~~~il~~lr~~  158 (178)
T d2fug21         141 ECVTRARLEALLAGLRAG  158 (178)
T ss_dssp             CSCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHcC
Confidence            568999999999987433