Citrus Sinensis ID: 023384
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 283 | 2.2.26 [Sep-21-2011] | |||||||
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.996 | 0.789 | 0.491 | 2e-75 | |
| Q84KK5 | 357 | Isoflavone 7-O-methyltran | N/A | no | 0.989 | 0.784 | 0.465 | 3e-73 | |
| O22309 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.982 | 0.789 | 0.462 | 1e-71 | |
| O24529 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.982 | 0.789 | 0.459 | 3e-71 | |
| O22308 | 352 | Isoflavone-7-O-methyltran | N/A | no | 0.982 | 0.789 | 0.459 | 4e-71 | |
| C6TAY1 | 358 | Flavonoid 4'-O-methyltran | no | no | 0.992 | 0.784 | 0.455 | 2e-69 | |
| Q84KK4 | 365 | Isoflavone 4'-O-methyltra | N/A | no | 0.992 | 0.769 | 0.489 | 2e-65 | |
| O24305 | 360 | 6a-hydroxymaackiain methy | N/A | no | 0.992 | 0.780 | 0.465 | 9e-65 | |
| Q6VMW0 | 366 | 8-hydroxyquercetin 8-O-me | N/A | no | 0.996 | 0.770 | 0.457 | 1e-63 | |
| Q93WU2 | 357 | Eugenol O-methyltransfera | N/A | no | 0.985 | 0.781 | 0.470 | 2e-62 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function desciption |
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Score = 282 bits (722), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 140/285 (49%), Positives = 186/285 (65%), Gaps = 3/285 (1%)
Query: 1 MRLLVHSGCFKKTKVN--GQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSL 58
MR+LVHSG +V +EE Y LT AS LL+ D + P V +DP P+ L
Sbjct: 74 MRILVHSGFLAAQRVQQGKEEEGYVLTDASRLLLMDDSLSIRPLVLAMLDPILTKPWHYL 133
Query: 59 SSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEG 118
S+WF+ + T + T + FW++ P +N FNEAMASD +LTS ++K E + +F G
Sbjct: 134 SAWFQNDDPTPFHTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLK-EGQGVFAG 192
Query: 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPAD 178
L SLVDVGGG G +++ I+ AFP + CTVLDL HVVA L + NL Y AGDMF+ IPPAD
Sbjct: 193 LNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNLNYFAGDMFEAIPPAD 252
Query: 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD 238
A L K + H +E+ +KILK+ R AI S GKVIIID+++ + +++ TET+ FD
Sbjct: 253 AILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSTETQLFFD 312
Query: 239 IVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+ M + A G+ER E+EW KLF DA FSHYKITPI G+R LIE+YP
Sbjct: 313 MTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0 |
| >sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1 | Back alignment and function description |
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Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 133/286 (46%), Positives = 186/286 (65%), Gaps = 6/286 (2%)
Query: 1 MRLLVHSGCFKKTKVNGQEE---AYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQS 57
MR + H+G F++ ++ ++E AY LTAAS LL+K CL+P V +DP Y
Sbjct: 75 MRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGSYHQ 134
Query: 58 LSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFE 117
L W +LTL+ G FWEF+N+NP N+ FN+AMASD++++ + +C FE
Sbjct: 135 LKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMIN--LALRDCNSGFE 192
Query: 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPA 177
G+ S+VDVGGG G+ ++II + FP +KC V D P VV NL +NL Y+ GDMFQ +P A
Sbjct: 193 GVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSVPKA 252
Query: 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLF 237
DA L K + H D D +IL+K + A++S+GE+GKVIII++VIN ++EHE+T TK L
Sbjct: 253 DAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTKLLM 312
Query: 238 DIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
D+ M+ GKER+E EW KLF +A F YKI+P+ G LIE+YP
Sbjct: 313 DVNMAC-LNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
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7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone. Glycyrrhiza echinata (taxid: 46348) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
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Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 184/283 (65%), Gaps = 5/283 (1%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MR L H+G F+ + +EE+Y LT AS LL++ CL+P V +DP Y L
Sbjct: 75 MRYLAHNGFFEI--ITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKK 132
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
W +LTL+ G FW+F+++NP N FN+AMASD++++ + +C +F+GL
Sbjct: 133 WIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGLE 190
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAF 180
S+VDVGGG G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF IP ADA
Sbjct: 191 SIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAV 250
Query: 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV 240
L K + H D+D L+ILKK + A+ ++G+RGKV IID+VIN +++E+++T+ K L D+
Sbjct: 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKKDENQVTQIKLLMDVN 310
Query: 241 MSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
M+ GKER E EW KLF +A F HYKI+P+ G LIEIYP
Sbjct: 311 MAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1 | Back alignment and function description |
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Score = 268 bits (685), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 184/283 (65%), Gaps = 5/283 (1%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MR L H+G F+ + +EE+Y LT AS LL++ CL+P V +DP Y L
Sbjct: 75 MRYLAHNGFFEI--ITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKK 132
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
W +LTL+ G FW+F+++NP N FN+AMASD++++ + +C +F+GL
Sbjct: 133 WIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGLE 190
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAF 180
S+VDVGGG G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF IP ADA
Sbjct: 191 SIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAV 250
Query: 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV 240
L K + H D+D L+ILKK + A+ ++G+RGKV IID+VI+ +++E+++T+ K L D+
Sbjct: 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVN 310
Query: 241 MSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
M+ GKER E EW KLF +A F HYKI+P+ G LIEIYP
Sbjct: 311 MAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (684), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 130/283 (45%), Positives = 184/283 (65%), Gaps = 5/283 (1%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MR L H+G F+ + +EE+Y LT AS LL++ CL+P V +DP Y L
Sbjct: 75 MRYLAHNGFFEI--ITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKK 132
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
W +LTL+ G FW+F+++NP N FN+AMASD++++ + +C +F+GL
Sbjct: 133 WIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN--LALRDCDFVFDGLE 190
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAF 180
S+VDVGGG G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF IP ADA
Sbjct: 191 SIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAV 250
Query: 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV 240
L K + H D+D L+ILKK + A+ ++G+RGKV IID+VI+ +++E+++T+ K L D+
Sbjct: 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKDENQVTQIKLLMDVN 310
Query: 241 MSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
M+ GKER E EW KLF +A F HYKI+P+ G LIEIYP
Sbjct: 311 MAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
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Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency. Medicago sativa (taxid: 3879) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 0 |
| >sp|C6TAY1|SOMT2_SOYBN Flavonoid 4'-O-methyltransferase OS=Glycine max PE=1 SV=1 | Back alignment and function description |
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Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/283 (45%), Positives = 180/283 (63%), Gaps = 2/283 (0%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MR L H+G F+ +++ EAY LTAAS LL+K L+P V F++P + L
Sbjct: 78 MRYLAHNGFFEIVRIHDNIEAYALTAASELLVKSSELSLAPMVEYFLEPNCQGAWNQLKR 137
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
W +LT++ G FW+F+N++P N+ FNEAMA D+++L + +C +FEGL
Sbjct: 138 WVHEEDLTVFGVSLGTPFWDFINKDPAYNKSFNEAMACDSQMLN--LAFRDCNWVFEGLE 195
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAF 180
S+VDVGGG G ++II EAFP +KC VL+ P+VV NL ++NL ++ GDMF+ IP ADA
Sbjct: 196 SIVDVGGGTGITAKIICEAFPKLKCMVLERPNVVENLSGSNNLTFVGGDMFKCIPKADAV 255
Query: 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV 240
L KLV H D D +KIL+ + AI+ + GKV++ID VIN ++E ++TE K L D+
Sbjct: 256 LLKLVLHNWNDNDCMKILENCKEAISGESKTGKVVVIDTVINENKDERQVTELKLLMDVH 315
Query: 241 MSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
M+ GKER E +W KLF +A F YKI+P G LIEIYP
Sbjct: 316 MACIINGKERKEEDWKKLFMEAGFQSYKISPFTGYLSLIEIYP 358
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S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the 4'-methylation of naringenin (4',5,7-trihydroxyflavanone) into ponciretin (4'-methoxy-5,7-dihydroxyflavanone). In vitro, also able to convert apigenin, daidzein, genistein and quercetin into the 4'-O-methylated compounds acacetin, formononetin, biochanine A and 4'-methylated quercetin, respectively. Glycine max (taxid: 3847) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 3 EC: 1 |
| >sp|Q84KK4|I4OMT_LOTJA Isoflavone 4'-O-methyltransferase OS=Lotus japonicus GN=HI4'OMT PE=1 SV=1 | Back alignment and function description |
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Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/292 (48%), Positives = 185/292 (63%), Gaps = 11/292 (3%)
Query: 1 MRLLVHSGCFKKTKVN---GQEE--AYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPY 55
+RLL H+G F KT V+ G EE AYGLT S LL+K CL+P V + P + +
Sbjct: 76 LRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKGALHPSSLDMW 135
Query: 56 QSLSSWF--KGAELTLWETVHGIKFWEFMNQNPGIN--QRFNEAMASDTEILTSFVVKAE 111
+S WF ELTL+E+ G FWEF+N+ + F EAMA+D+ + + E
Sbjct: 136 RSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSHMFK--LALKE 193
Query: 112 CKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMF 171
CK +FEGLGSLVDV GG G ++++I EAFP +KCTV D P VVANL +NL ++ GDMF
Sbjct: 194 CKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENLNFVGGDMF 253
Query: 172 QFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231
+ +PPADA L K V H DE LKILK + AI+ G+ GKVIIIDI I+ ++ ELT
Sbjct: 254 KSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDETSDDRELT 313
Query: 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
E K +D+VM GKER + EW KL +DA FS YKITPI G + LIE++P
Sbjct: 314 ELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
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2-hydroxyisoflavanone 4'-O-methyltransferase involved in the biosynthesis of formononetin. Can use 2,7,4'-trihydroxyisoflavanone as substrate, but not daidzein. Lotus japonicus (taxid: 34305) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 1 EC: 2 |
| >sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 177/288 (61%), Gaps = 7/288 (2%)
Query: 1 MRLLVHSGCFKKTKVN---GQEE-AYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQ 56
+RLL H+G F KT V G+EE AY LT +S LL+ K CLS V + P + +
Sbjct: 75 LRLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGALHPSSLDMWG 134
Query: 57 SLSSWF-KGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI 115
WF + E TL+E G +W+F+N++ F +AMA+D+ + + E K +
Sbjct: 135 VSKKWFHEDKEQTLFECATGENYWDFLNKDSDSLSMFQDAMAADSRLFK--LAIQENKHV 192
Query: 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIP 175
FEGL SLVDV GG G ++++I EAFP IKCTV D P VV NL +NL ++ GDMF+ +P
Sbjct: 193 FEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGNENLNFVGGDMFKSVP 252
Query: 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235
ADA L K V H DE LKILK + AI+ G+ GKVIIIDI I+ ++ LTE +
Sbjct: 253 SADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSDDRGLTELQL 312
Query: 236 LFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+D+VM GKERT+ EW KL +DA FS YKITPI G + LIE+YP
Sbjct: 313 EYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360
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Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis. Pisum sativum (taxid: 3888) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (620), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 191/293 (65%), Gaps = 11/293 (3%)
Query: 1 MRLLVHSGCFKKTKVNGQEE---------AYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 51
MR+LVHSG F K KV + E AY LT AS LL++ +P ++P DP +
Sbjct: 75 MRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMSDPVY 134
Query: 52 VAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAE 111
+ LS WF+ + ++T +G+ F E+ + +N FNEAMA D + S ++ E
Sbjct: 135 TETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNS-ILTTE 193
Query: 112 CKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMF 171
C++IF+GL S+VDVGGG G+ ++ I+ AFPG++CTVLDLP+VV L ++NL +++GDMF
Sbjct: 194 CREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSFVSGDMF 253
Query: 172 QFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIA-SNGERGKVIIIDIVINAEEEEHEL 230
FIP ADA K + H DE+ +KILKK + AI+ SN K+I+++IV+ E+E HE
Sbjct: 254 DFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKETHEA 313
Query: 231 TETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
TETK FD+ M TGKER+E EW KLFFDA F++YKIT + G+R +IE++P
Sbjct: 314 TETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
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8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether. Mentha piperita (taxid: 34256) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|Q93WU2|EOMT1_OCIBA Eugenol O-methyltransferase OS=Ocimum basilicum GN=EOMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/285 (47%), Positives = 176/285 (61%), Gaps = 6/285 (2%)
Query: 1 MRLLVHSGCF-KKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLS 59
MR LV+S F ++ N QE Y LT AS LL+K+ P ++P V V +DP F P+ +S
Sbjct: 77 MRALVNSNFFIEENNSNNQEVCYWLTPASCLLLKEAPLTVTPLVQVVLDPTFTNPWHHMS 136
Query: 60 SWFKGAE-LTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEG 118
WF + T +E +G FWE + P + F+EAM+ D+ ++ K + K + EG
Sbjct: 137 EWFTHEKHATQFEAANGCTFWEKLANEPSKGRFFDEAMSCDSRLIAHVFTK-DYKHVIEG 195
Query: 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPAD 178
+ +LVDVGGGNG++++ I EA P IKCTV+DLPHVVA L DNL YI GDMFQ IP AD
Sbjct: 196 IRTLVDVGGGNGTMAKAIVEAMPTIKCTVIDLPHVVAGLESTDNLNYIGGDMFQSIPSAD 255
Query: 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD 238
A L K + H D +GLKILKK + A+ GKVIIID+V+ + E+ E + FD
Sbjct: 256 AILLKSIIHDWDDVEGLKILKKCKDAVVMG---GKVIIIDVVVGVNHDIDEVLEDQLHFD 312
Query: 239 IVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+ M KERT SEW KL +DA F YK+TP FG+R LIE YP
Sbjct: 313 MAMMCYFNAKERTMSEWEKLIYDAGFKSYKLTPAFGVRSLIEAYP 357
|
Phenylpropene O-methyltransferase that catalyzes the methylation of the para-4-hydroxyl of eugenol to methyleugenol. Can also convert chavicol to methylchavicol but with less affinity. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 283 | ||||||
| 224077038 | 359 | flavonoid o-methyltransferase related [P | 0.989 | 0.779 | 0.586 | 4e-91 | |
| 255562994 | 359 | o-methyltransferase, putative [Ricinus c | 0.992 | 0.782 | 0.579 | 2e-89 | |
| 224116348 | 372 | flavonoid o-methyltransferase related [P | 0.989 | 0.752 | 0.571 | 4e-89 | |
| 225443568 | 361 | PREDICTED: isoflavone-7-O-methyltransfer | 0.989 | 0.775 | 0.549 | 3e-83 | |
| 330375623 | 367 | orcinol O-methyltransferase-like protein | 0.996 | 0.768 | 0.521 | 2e-82 | |
| 225443570 | 354 | PREDICTED: isoflavone-7-O-methyltransfer | 0.992 | 0.793 | 0.544 | 4e-82 | |
| 20514369 | 366 | orcinol O-methyltransferase [Rosa hybrid | 0.996 | 0.770 | 0.514 | 4e-82 | |
| 147788173 | 354 | hypothetical protein VITISV_009881 [Viti | 0.992 | 0.793 | 0.540 | 1e-81 | |
| 20514367 | 367 | orcinol O-methyltransferase [Rosa hybrid | 0.996 | 0.768 | 0.514 | 4e-81 | |
| 255563164 | 355 | o-methyltransferase, putative [Ricinus c | 0.992 | 0.791 | 0.531 | 5e-81 |
| >gi|224077038|ref|XP_002305103.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222848067|gb|EEE85614.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/288 (58%), Positives = 212/288 (73%), Gaps = 8/288 (2%)
Query: 1 MRLLVHSGCFKKTKV-----NGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPY 55
MR+LVHSG F TK G+EEAY LT S LL+KD CLSP +S+ ++P FV P+
Sbjct: 75 MRMLVHSGFFATTKAANGQGEGEEEAYVLTPPSQLLVKDNTNCLSPFMSL-INPAFVTPW 133
Query: 56 QSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI 115
SL WF+G E T +E +G+ FWE+ NQNP +N+ FNEAMA D++++ +V +CK I
Sbjct: 134 LSLGDWFRGNEPTAFEHAYGMAFWEYHNQNPELNRLFNEAMACDSQMMN--LVIRDCKPI 191
Query: 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIP 175
FEGL S+VDVGGG GSLSRIISEAFP + CTVL+LP V+ NL NL Y+ GDMFQ IP
Sbjct: 192 FEGLNSMVDVGGGTGSLSRIISEAFPHMNCTVLELPQVITNLEGTKNLNYVGGDMFQHIP 251
Query: 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235
ADA L KL+FHG DED LKILKK + AI+S + GKVII+D+VI+ +++E ELTETK
Sbjct: 252 SADAVLLKLIFHGWSDEDCLKILKKCKEAISSKEKGGKVIIVDVVIDEKKDEKELTETKL 311
Query: 236 LFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
LFD++M V A GKER+ EW KLF +A FSHYKITP+FG+R LIE+YP
Sbjct: 312 LFDMLMMVVAAGKERSVKEWEKLFLEAGFSHYKITPLFGLRSLIEVYP 359
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562994|ref|XP_002522501.1| o-methyltransferase, putative [Ricinus communis] gi|223538192|gb|EEF39801.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 167/288 (57%), Positives = 208/288 (72%), Gaps = 7/288 (2%)
Query: 1 MRLLVHSGCFKKTKV-NGQEEA---YGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQ 56
MR+LVHSG F TK NGQEE Y LT +S LL+KD P CL P V + P FV P
Sbjct: 74 MRMLVHSGFFSITKAANGQEEGQEVYVLTPSSKLLVKDNPNCLKPFVDSLLKPDFVTPGH 133
Query: 57 SLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIF 116
L WF+G ELT+++ HG+ FWE+ +NP NQ FNEAMASD+ ++ +V +CK IF
Sbjct: 134 VLGDWFRGNELTVFQRAHGMAFWEYNERNPEFNQLFNEAMASDSRMMN--LVIRDCKPIF 191
Query: 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPP 176
EG+ SLVDVGGGNGSL+RIISEAFP +KCTVL+LP V+ NL NL Y+ GDMFQ IP
Sbjct: 192 EGVNSLVDVGGGNGSLARIISEAFPDMKCTVLELPQVIGNLEGTKNLNYVGGDMFQHIPS 251
Query: 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERG-KVIIIDIVINAEEEEHELTETKF 235
ADA + KL+ HG DE+ +KILKK + AI+S G+ KVI+ID+VIN +++E+E TETK
Sbjct: 252 ADAIILKLILHGWNDEECVKILKKCKEAISSTGKGSEKVIVIDLVINDKKDEYEFTETKL 311
Query: 236 LFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
LFD++M ATGKERTE EW +LF A FSH+KITPI G+R LIE+YP
Sbjct: 312 LFDMLMMFVATGKERTEKEWGELFLKAGFSHFKITPILGLRSLIEVYP 359
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116348|ref|XP_002331960.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222874737|gb|EEF11868.1| flavonoid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 164/287 (57%), Positives = 211/287 (73%), Gaps = 7/287 (2%)
Query: 1 MRLLVHSGCFKKTKV----NGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQ 56
MR+LVHSG F TK G EAY LT S LL+KD CLSP +S+ ++P FV P+
Sbjct: 89 MRMLVHSGFFATTKAVIGQGGGGEAYVLTPPSQLLVKDNTNCLSPFMSL-INPAFVTPWH 147
Query: 57 SLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIF 116
SL WF+G+E T ++ +G+ FWE+ NQNP +N FN AMA D++++ +V +CK IF
Sbjct: 148 SLGDWFRGSEPTAFQQAYGMAFWEYNNQNPELNGLFNAAMACDSQMMN--LVIRDCKPIF 205
Query: 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPP 176
EGL S+VDVGGG GSL+RIISE FP + CTVL++P V+ANL +NLKY+ GDMFQ IP
Sbjct: 206 EGLDSMVDVGGGTGSLARIISETFPHMNCTVLEIPQVIANLEGTENLKYVGGDMFQHIPS 265
Query: 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFL 236
ADA L KL+FHG DED +KILKK + AI+S + GKVII+D+VIN +++EHELTETK L
Sbjct: 266 ADAVLLKLIFHGWSDEDCVKILKKCKEAISSKEKGGKVIIVDVVINEKKDEHELTETKLL 325
Query: 237 FDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
FD++M V A GKER+ EW +LF +A FSHYKIT +FG+R LIE+YP
Sbjct: 326 FDMLMMVVAAGKERSVEEWERLFLEAGFSHYKITSLFGLRSLIEVYP 372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443568|ref|XP_002278092.1| PREDICTED: isoflavone-7-O-methyltransferase 9 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 314 bits (804), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 160/291 (54%), Positives = 204/291 (70%), Gaps = 11/291 (3%)
Query: 1 MRLLVHSGCFKKTKVNG----QEEAYGLTAASTLLIKDKPYCLSPTVSVFV----DPFFV 52
MR+LVHSG F KV+ ++E Y LT +S LL+ K P +S FV DP V
Sbjct: 74 MRVLVHSGFFATAKVHENQEEEDEGYVLTTSSRLLLS-KDNNNVPNLSAFVLAMLDPVLV 132
Query: 53 APYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAEC 112
P+ L WF+G +LT ++T HG FW++ + + FNEAMASD+ ++ S V+K +C
Sbjct: 133 TPWHFLGDWFRGNDLTAFDTAHGKSFWDYGSHDHKFFNLFNEAMASDSRMM-SLVIK-DC 190
Query: 113 KQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ 172
+ +FEGLGSLVDVGGG G ++RIISEAFP +KCTV DLPHVV+N PE NLKY+ GDMFQ
Sbjct: 191 RPVFEGLGSLVDVGGGKGLIARIISEAFPQLKCTVFDLPHVVSNFPECGNLKYVGGDMFQ 250
Query: 173 FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232
+P ADA L KLV H L DE+ +KILKK R AI S + GKVI+IDIVIN ++EEH++TE
Sbjct: 251 SVPTADAILLKLVLHSLSDEECVKILKKCREAIPSKEKGGKVIVIDIVINEKKEEHDITE 310
Query: 233 TKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
K LFD++M TG+ER E EW KLF +A FSHYKI PIFG+R LIE++P
Sbjct: 311 AKLLFDLLMMTVVTGRERNEKEWEKLFLEAGFSHYKINPIFGLRSLIEVFP 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|330375623|gb|AEC13057.1| orcinol O-methyltransferase-like protein [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/284 (52%), Positives = 199/284 (70%), Gaps = 2/284 (0%)
Query: 1 MRLLVHSGCFKKTKVNG-QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLS 59
MR+LVHSG F K K++ EE Y LT AS LL+KD P L+P ++ +DP P+ LS
Sbjct: 85 MRILVHSGFFAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPFLTAMLDPVLTKPWNYLS 144
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
+WF+ + T ++T HG+ FW++ N P I FN+AMASD ++TS ++ +CK +FEGL
Sbjct: 145 TWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIID-DCKGVFEGL 203
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADA 179
SLVDVGGG G++++ I++AFP I+CTVLDLPHVVA+L + NLKY GDMF+ +PPAD
Sbjct: 204 ESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGSKNLKYTGGDMFEAVPPADT 263
Query: 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 239
L K + H DE+ +KILK+ R AI S + GKVIIID+++ ++ + E ET+ FD+
Sbjct: 264 VLLKWILHDWNDEECVKILKRSREAITSKDKNGKVIIIDMMMENQKGDEESIETQLFFDM 323
Query: 240 VMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+M TGKER E EWAKLF DA FS YKITPI G+R LIE+YP
Sbjct: 324 LMMALVTGKERNEKEWAKLFTDAGFSDYKITPILGLRSLIEVYP 367
|
Source: Rosa chinensis Species: Rosa chinensis Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443570|ref|XP_002278127.1| PREDICTED: isoflavone-7-O-methyltransferase 9 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 154/283 (54%), Positives = 195/283 (68%), Gaps = 2/283 (0%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MRLLVHSG F KV+ +E Y LT S LL+K L+P V +DP V P+ L S
Sbjct: 74 MRLLVHSGFFAMQKVDENQEGYVLTPPSRLLVKGNATSLAPIVLGMLDPVLVTPWHFLGS 133
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
W +G+ LT +E HG+ W + NQNP E MA+D+ ++ S ++ ECK+IFEGL
Sbjct: 134 WLQGSSLTAFEAAHGMDLWNYGNQNPEFFSLIGEIMATDSRMM-SLAIR-ECKEIFEGLS 191
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAF 180
SLVDVGGG G+++R I EAFP +KCTVLDLP VVANLP+++NL Y+ GDMFQ IP ADA
Sbjct: 192 SLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENLDYVGGDMFQSIPSADAI 251
Query: 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV 240
K V H GDED +KILK+ R AI S+ E GKVIIID+V++ +++EHEL +TK D++
Sbjct: 252 FIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSNKKDEHELAKTKLFNDMM 311
Query: 241 MSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
M V GKER E EW KLF +A FSHYKITP FG+ LIE+YP
Sbjct: 312 MMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20514369|gb|AAM23005.1|AF502434_1 orcinol O-methyltransferase [Rosa hybrid cultivar] gi|27527924|emb|CAD29459.1| orcinol O-methyltransferase [Rosa chinensis] gi|53748112|emb|CAH05078.1| orcinol O-methyltransferase 2 [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 199/284 (70%), Gaps = 2/284 (0%)
Query: 1 MRLLVHSGCFKKTKVN-GQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLS 59
MR+LVHSG F K K++ EE Y LT AS LL+KD P L+P ++ +DP P+ LS
Sbjct: 84 MRILVHSGFFAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPFLTAMLDPVLTTPWNYLS 143
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
+WF+ + T ++T HG+ FW++ N P I FN+AMASD ++TS ++ +CK +FEGL
Sbjct: 144 TWFQNEDPTPFDTAHGMTFWDYGNHQPSIAHLFNDAMASDARLVTSVIID-DCKGVFEGL 202
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADA 179
SLVDVGGG G++++ I++AFP I+CTVLDLPHVVA+L + NLKY GDMF+ +PPAD
Sbjct: 203 ESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGSKNLKYTGGDMFEAVPPADT 262
Query: 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 239
L K + H DE+ +KILK+ R AI S ++GKVIIID+++ ++ + E ET+ FD+
Sbjct: 263 VLLKWILHDWNDEECIKILKRSRVAITSKDKKGKVIIIDMMMENQKGDEESIETQLFFDM 322
Query: 240 VMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+M G+ER E EWAKLF DA FS YKITPI G+R LIE+YP
Sbjct: 323 LMMALVRGQERNEKEWAKLFTDAGFSDYKITPILGLRSLIEVYP 366
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147788173|emb|CAN75970.1| hypothetical protein VITISV_009881 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/283 (54%), Positives = 194/283 (68%), Gaps = 2/283 (0%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MRLLVHSG F KV+ +E Y LT S LL+K L+P V +DP V P+ L S
Sbjct: 74 MRLLVHSGFFAMQKVDENQEGYVLTPPSRLLVKGNATSLAPIVLGMLDPVLVTPWHFLGS 133
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
W +G+ LT +E HG+ W + NQNP E MA+D+ ++ S ++ ECK+IFEG
Sbjct: 134 WLQGSSLTAFEAAHGMDLWNYGNQNPEXFSXIGEIMATDSRMM-SLAIR-ECKEIFEGXS 191
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAF 180
SLVDVGGG G+++R I EAFP +KCTVLDLP VVANLP+++NL Y+ GDMFQ IP ADA
Sbjct: 192 SLVDVGGGTGTMARGICEAFPHLKCTVLDLPQVVANLPKSENLDYVGGDMFQSIPSADAI 251
Query: 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV 240
K V H GDED +KILK+ R AI S+ E GKVIIID+V++ +++EHEL +TK D++
Sbjct: 252 FIKSVLHNWGDEDCVKILKRCREAIPSSAEGGKVIIIDLVLSNKKDEHELAKTKLFNDMM 311
Query: 241 MSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
M V GKER E EW KLF +A FSHYKITP FG+ LIE+YP
Sbjct: 312 MMVLVAGKERCEEEWEKLFLEAGFSHYKITPRFGVLSLIEVYP 354
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20514367|gb|AAM23004.1|AF502433_1 orcinol O-methyltransferase [Rosa hybrid cultivar] gi|27527922|emb|CAD29458.1| orcinol O-methyltransferase [Rosa chinensis] gi|53748110|emb|CAH05077.1| orcinol O-methyltransferase 1 [Rosa chinensis] | Back alignment and taxonomy information |
|---|
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/284 (51%), Positives = 198/284 (69%), Gaps = 2/284 (0%)
Query: 1 MRLLVHSGCFKKTKVNG-QEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLS 59
MR+LVHSG F K K++ EE Y LT AS LL+KD P L+P ++ +DP P+ LS
Sbjct: 85 MRILVHSGFFAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPYLTAMLDPVLTNPWNYLS 144
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
+WF+ + T ++T HG+ FW++ N P I FN+AMASD ++TS ++ +CK +FEGL
Sbjct: 145 TWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHLFNDAMASDARLVTSVIIN-DCKGVFEGL 203
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADA 179
SLVDVGGG G+L++ I++AFP I+CTVLDLPHVVA+L + NLKY GDMF+ +PPAD
Sbjct: 204 ESLVDVGGGTGTLAKAIADAFPHIECTVLDLPHVVADLQGSKNLKYTGGDMFEAVPPADT 263
Query: 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 239
L K + H DE+ +KIL++ R AI ++GKVIIID+++ ++ + E ET+ FD+
Sbjct: 264 VLLKWILHDWSDEECIKILERSRVAITGKEKKGKVIIIDMMMENQKGDEESIETQLFFDM 323
Query: 240 VMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+M GKER E EWAKLF DA FS YKITPI G+R LIE+YP
Sbjct: 324 LMMALVGGKERNEKEWAKLFTDAGFSDYKITPISGLRSLIEVYP 367
|
Source: Rosa hybrid cultivar Species: Rosa hybrid cultivar Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563164|ref|XP_002522586.1| o-methyltransferase, putative [Ricinus communis] gi|223538277|gb|EEF39886.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 151/284 (53%), Positives = 202/284 (71%), Gaps = 3/284 (1%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MR+LV+SG F T+ +EAY LT ++ LL+KD P CLS V + P +VA L
Sbjct: 74 MRMLVYSGFFVTTETPDGQEAYDLTPSTRLLVKDNPNCLSSFVIALLWPDYVAAGHYLGD 133
Query: 61 WFKGAEL-TLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
WFK +L T+++ HG++FWE+ ++P NQ FNE+MASD+ ++ +V +CK IFEGL
Sbjct: 134 WFKNNKLDTVYDQAHGMEFWEYNERHPEYNQIFNESMASDSRMMN--LVIGDCKPIFEGL 191
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADA 179
S+VDVGGGNGSL+RIIS+ FP ++CTVLD VV +L + NL Y+ GDMF+ +P ADA
Sbjct: 192 NSVVDVGGGNGSLARIISQNFPHMQCTVLDRAQVVGSLEGSKNLNYVPGDMFKHVPSADA 251
Query: 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 239
+ KLV H DE+ ++ILK R AIAS G+ GKVI+IDIV++ ++E+ ELTETK LFDI
Sbjct: 252 AILKLVLHCWNDEECIRILKNCREAIASKGKGGKVIVIDIVVDEKKEQDELTETKLLFDI 311
Query: 240 VMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+M V G ERTE EW +LF +A FSHYKITP+ G+R LIE+YP
Sbjct: 312 LMMVVVNGTERTEKEWKRLFLEAGFSHYKITPLLGVRSLIEVYP 355
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 283 | ||||||
| UNIPROTKB|Q84KK4 | 365 | HI4'OMT "Isoflavone 4'-O-methy | 0.992 | 0.769 | 0.479 | 1.6e-63 | |
| UNIPROTKB|Q84KK5 | 357 | D7OMT "Isoflavone 7-O-methyltr | 0.989 | 0.784 | 0.447 | 2e-63 | |
| UNIPROTKB|Q84KK6 | 367 | HI4'OMT "Isoflavone 4'-O-methy | 0.992 | 0.765 | 0.471 | 3e-62 | |
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.996 | 0.770 | 0.436 | 7.9e-62 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.989 | 0.788 | 0.425 | 8.6e-56 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.975 | 0.793 | 0.423 | 8.3e-51 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.936 | 0.708 | 0.387 | 1.4e-48 | |
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.982 | 0.727 | 0.359 | 1.1e-34 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.731 | 0.636 | 0.366 | 2.6e-32 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.971 | 0.757 | 0.320 | 9.1e-29 |
| UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)] | Back alignment and assigned GO terms |
|---|
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 140/292 (47%), Positives = 180/292 (61%)
Query: 1 MRLLVHSGCFKKTKVN---GQEE--AYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPY 55
+RLL H+G F KT V+ G EE AYGLT S LL+K CL+P V + P + +
Sbjct: 76 LRLLTHNGFFAKTTVSRGEGAEEETAYGLTPPSKLLVKSNSTCLAPIVKGALHPSSLDMW 135
Query: 56 QSLSSWF--KGAELTLWETVHGIKFWEFMNQNPGIN--QRFNEAMASDTEILTSFVVKAE 111
+S WF ELTL+E+ G FWEF+N+ + F EAMA+D+ + +K E
Sbjct: 136 RSSKKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSHMF-KLALK-E 193
Query: 112 CKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMF 171
CK +FEGLGSLVDV GG G ++++I EAFP +KCTV D P VVANL +NL ++ GDMF
Sbjct: 194 CKHVFEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGDENLNFVGGDMF 253
Query: 172 QFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAXXXXXXXX 231
+ +PPADA L K V H DE LKILK + AI+ G+ GKVIIIDI I+
Sbjct: 254 KSVPPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIIDISIDETSDDRELT 313
Query: 232 XXKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
K +D+VM GKER + EW KL +DA FS YKITPI G + LIE++P
Sbjct: 314 ELKLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365
|
|
| UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 128/286 (44%), Positives = 178/286 (62%)
Query: 1 MRLLVHSGCFKKTKVNGQEE---AYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQS 57
MR + H+G F++ ++ ++E AY LTAAS LL+K CL+P V +DP Y
Sbjct: 75 MRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVLDPTLSGSYHQ 134
Query: 58 LSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFE 117
L W +LTL+ G FWEF+N+NP N+ FN+AMASD++++ + +C FE
Sbjct: 135 LKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQMIN--LALRDCNSGFE 192
Query: 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPA 177
G+ S+VDVGGG G+ ++II + FP +KC V D P VV NL +NL Y+ GDMFQ +P A
Sbjct: 193 GVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENLSGTNNLSYVGGDMFQSVPKA 252
Query: 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLF 237
DA L K + H D D +IL+K + A++S+GE+GKVIII++VIN K L
Sbjct: 253 DAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDEHEITGTKLLM 312
Query: 238 DIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
D+ M+ GKER+E EW KLF +A F YKI+P+ G LIE+YP
Sbjct: 313 DVNMAC-LNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357
|
|
| UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 139/295 (47%), Positives = 182/295 (61%)
Query: 1 MRLLVHSGCFKKTKV------NGQEE---AYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 51
+RLL H+G F KT V +G+EE AY LT S LL+K KP CL+ V + P
Sbjct: 75 LRLLTHNGFFAKTTVPSQNGKDGEEEEETAYALTPPSKLLVKGKPTCLASIVRGALHPSS 134
Query: 52 VAPYQSLSSWFK-GAELTLWETVHGIKFWEFMNQNP--GINQRFNEAMASDTEILTSFVV 108
+ ++S WFK ELTL+E+ G FW+F+N++ G F EAMA+D+++ +
Sbjct: 135 LDMWRSSEKWFKEDKELTLFESATGESFWDFLNKDSESGTLSMFQEAMAADSQMF-KLAL 193
Query: 109 KAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAG 168
K EC+ +FEGL SLVDVGGG G ++++I E FP +KCTV D P VV NL +NLK++ G
Sbjct: 194 K-ECRHVFEGLESLVDVGGGTGGVTKLIHEEFPHLKCTVFDQPQVVGNLSGNENLKFVGG 252
Query: 169 DMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAXXXXX 228
DMF+ IPPADA L K V H DE LKILK + AI+ G+ GKVIIIDI I+
Sbjct: 253 DMFKSIPPADAVLLKWVLHDWNDELSLKILKNSKEAISGKGKEGKVIIIDISIDEASGDR 312
Query: 229 XXXXXKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+ +D+VM GKER + EW KL DA FS YKITPI G + LIE++P
Sbjct: 313 ELTELQLDYDLVMLTMFNGKEREKKEWEKLISDAGFSSYKITPICGFKSLIEVFP 367
|
|
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 128/293 (43%), Positives = 185/293 (63%)
Query: 1 MRLLVHSGCFKKTKVN----GQEE-----AYGLTAASTLLIKDKPYCLSPTVSVFVDPFF 51
MR+LVHSG F K KV G++E AY LT AS LL++ +P ++P DP +
Sbjct: 75 MRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMSDPVY 134
Query: 52 VAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAE 111
+ LS WF+ + ++T +G+ F E+ + +N FNEAMA D + S ++ E
Sbjct: 135 TETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNS-ILTTE 193
Query: 112 CKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMF 171
C++IF+GL S+VDVGGG G+ ++ I+ AFPG++CTVLDLP+VV L ++NL +++GDMF
Sbjct: 194 CREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSFVSGDMF 253
Query: 172 QFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIA-SNGERGKVIIIDIVINAXXXXXXX 230
FIP ADA K + H DE+ +KILKK + AI+ SN K+I+++IV+
Sbjct: 254 DFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKETHEA 313
Query: 231 XXXKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
K FD+ M TGKER+E EW KLFFDA F++YKIT + G+R +IE++P
Sbjct: 314 TETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 122/287 (42%), Positives = 179/287 (62%)
Query: 1 MRLLVHSGCFKKTKVNGQEEA-YGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLS 59
MR+L +G + +++G+ E Y LT +S +L+K +P L V DP + ++SLS
Sbjct: 72 MRVLAKNGFCSEEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMADPVQLKAWESLS 131
Query: 60 SWFKGAE--LTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFE 117
W++ + T +ET HG FW + +++ + FNEAMASD+++++ ++ E K +FE
Sbjct: 132 DWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISKLLI-GEYKFLFE 190
Query: 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPA 177
GL SLVD+GGG G++++ I++ FP +KCTV DLPHVVANL +N++++AGDMF+ IP A
Sbjct: 191 GLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFVAGDMFEKIPSA 250
Query: 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLF 237
+A K + H DED +KILK + AI + G GKVIIID+V+ + +
Sbjct: 251 NAIFLKWILHDWNDEDCVKILKSCKKAIPAKG--GKVIIIDMVMYSDKKDDHLVKTQTSM 308
Query: 238 DIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGM-RFLIEIYP 283
D+ M VN KER E EWA LF +A FS YKI P R LIE+YP
Sbjct: 309 DMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 121/286 (42%), Positives = 171/286 (59%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPY-CLSPTVSVFVDPFFVAPYQSLS 59
MR+LV +G F + + N Y LT + LL+K+ P +S + V A + ++S
Sbjct: 70 MRILVAAGYFSEEEKN----VYSLTPFTRLLLKNDPLNSISMVLGVNQIAELKA-WNAMS 124
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
WF+ +LT +ET HG FW+F ++ + F+ MA+D+ IL S ++ E +FEGL
Sbjct: 125 EWFQNEDLTAFETAHGKNFWDFGAEDK-YGKNFDGVMAADS-ILVSKMLIPEFNYLFEGL 182
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADA 179
SLVDVGGG G++++ I+++FP +KCTV DLPHVVANL +NL+++ GDMF+ IP A+A
Sbjct: 183 DSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDMFEKIPSANA 242
Query: 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLF-- 237
L K + H DE+ +K+LK R AI + GKVI+I+ V+ K
Sbjct: 243 ILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENEEAVKAQISS 302
Query: 238 DIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
DI M V T KERTE EWA LF +A FS YKI P+ R IE+YP
Sbjct: 303 DIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 109/281 (38%), Positives = 165/281 (58%)
Query: 16 NGQEEAYGLTAASTLLIKDKPYC---LSPTVSVFVDPFFVAPYQ-SLSSWFKGAE----- 66
+G+E Y LT AS+LL+ + LSP ++ + PF +P L++WF+ E
Sbjct: 97 DGREPVYKLTTASSLLVSSESSATASLSPMLNHVLSPFRDSPLSMGLTAWFRHDEDEQAP 156
Query: 67 -LTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDV 125
+ + ++G WE ++ IN FN AMA+D+ L ++K E ++F G+ SLVDV
Sbjct: 157 GMCPFTLMYGTTLWEVCRRDDAINALFNNAMAADSNFLMQILLK-EFSEVFLGIDSLVDV 215
Query: 126 GGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEAD--NLKYIAGDMFQFIPPADAFLFK 183
GG G + I+ AFP +KCTVLDLPHVVA P + N++++ GDMF+ IPPA+ L K
Sbjct: 216 AGGVGGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLK 275
Query: 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAXXXXXXXXXXKFLFDI-VMS 242
+ H +++ +KILK + AI S GK+IIID+V+ + + ++D+ +M
Sbjct: 276 WILHDWSNDECIKILKNCKQAIPSRDAGGKIIIIDVVVGSDSSDTKLLETQVIYDLHLMK 335
Query: 243 VNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+ G ER E EW K+F +A F YKI PI G+R +IE+YP
Sbjct: 336 IG--GVERDEQEWKKIFLEAGFKDYKIMPILGLRSIIELYP 374
|
|
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 107/298 (35%), Positives = 150/298 (50%)
Query: 1 MRLLVHSGCFKK--TKVNGQEEAYGLTAAST-LLIKDKP-YCLSPTVSVFVDPFFVAPYQ 56
MR LVH G FK+ TK +G Y T S L+I + L+P V P +AP+
Sbjct: 87 MRFLVHQGIFKEIPTK-DGLATGYVNTPLSRRLMITRRDGKSLAPFVLFETTPEMLAPWL 145
Query: 57 SLSSWFK----GAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAEC 112
LSS G+ ++ VHG W F NP ++ NEAMA D + V A C
Sbjct: 146 RLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVVPRVAGA-C 204
Query: 113 KQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ 172
+F+G+ ++VDVGGG G ++ + FP IK DLPHV+ D ++ + GDMF
Sbjct: 205 HGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVLDGVENVEGDMFD 264
Query: 173 FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI--NAXXXXXXX 230
IP DA K V H GD+D +KILK + A+ N GKV+I++ VI N
Sbjct: 265 SIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPN--IGKVLIVESVIGENKKTMIVDE 322
Query: 231 XXXKF-----LFDIVMSVN-ATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIY 282
K + D+VM + +TGKERT EW + +A F+ Y++ I ++ LI Y
Sbjct: 323 RDEKLEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 380
|
|
| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 80/218 (36%), Positives = 115/218 (52%)
Query: 73 VHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSL 132
+HG W F N +Q NEAMA D + V A C+ +F+G+ ++VDVGGG G
Sbjct: 109 LHGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGA-CQGLFDGVATVVDVGGGTGET 167
Query: 133 SRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDE 192
I+ + FP IK DLPHV+ D ++ + GDMF IP +DA + K V H GD+
Sbjct: 168 MGILVKEFPWIKGFNFDLPHVIEVAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDK 227
Query: 193 DGLKILKKRRAAIASNGERGKVIIIDIVIN-------AXXXXXXXXXXKFLFDIVMSVN- 244
D +KILK + A+ N GKV+I++ VI A + D+VM V+
Sbjct: 228 DCIKILKNCKEAVLPN--IGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHT 285
Query: 245 ATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIY 282
+TGKERT EW + +A F+ Y++ ++ LI Y
Sbjct: 286 STGKERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323
|
|
| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 94/293 (32%), Positives = 152/293 (51%)
Query: 1 MRLLV-HSGCF-KKTK-VNGQEE-AYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPY 55
+R LV +S C K K G+E AYGL LIKD+ + ++P V +
Sbjct: 78 LRFLVAYSVCTCKLVKDEEGRESRAYGLGKVGKKLIKDEDGFSIAPYVLAGCTKAKGGVW 137
Query: 56 QSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI 115
L+ + + WE + +E+M +N + + FNE+M + T I+ +++
Sbjct: 138 SYLTEAIQEGGASAWERANEALIFEYMKKNENLKKIFNESMTNHTSIVMKKILENYIG-- 195
Query: 116 FEGLGSLVDVGGGNGS-LSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFI 174
FEG+ VDVGG GS L++I+S+ +P IK DLPH+V P+ +++I GDMF I
Sbjct: 196 FEGVSDFVDVGGSLGSNLAQILSK-YPHIKGINFDLPHIVKEAPQIHGVEHIGGDMFDEI 254
Query: 175 PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAXXXXXXXXXXK 234
P + L K + H DE ++ILK + A+ E G++I+I++++
Sbjct: 255 PRGEVILMKWILHDWNDEKCVEILKNCKKALP---ETGRIIVIEMIVPREVSETDLATKN 311
Query: 235 FLF-DI-VMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMR--FLIEIYP 283
L D+ +MS+ + GKERT+ E+ L +A F KI I+G ++IE+YP
Sbjct: 312 SLSADLTMMSLTSGGKERTKKEFEDLAKEAGFKLPKI--IYGAYSYWIIELYP 362
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 283 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 9e-74 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 9e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 6e-06 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 9e-74
Identities = 95/243 (39%), Positives = 140/243 (57%), Gaps = 8/243 (3%)
Query: 18 QEEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGI 76
E YGLT AS LL+K + L+P + ++ DP + + L + +E G+
Sbjct: 3 GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVR-EGGPPFERAFGM 61
Query: 77 KFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRII 136
F+E++ +P N+ FN AMA+ + ++ ++ E F GL SLVDVGGG G+L+ I
Sbjct: 62 PFFEYLGADPEFNRVFNRAMAAHSRLVMKKIL--ETAFDFSGLSSLVDVGGGTGALAAAI 119
Query: 137 SEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196
A+P IK V DLPHV+A+ P AD ++++ GD F+ +P ADA L K V H DED +K
Sbjct: 120 VRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVK 179
Query: 197 ILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256
ILK+ A+ GKVI++++V+ + ++ TE L D+ M V GKERTE EW
Sbjct: 180 ILKRCYEALPPG---GKVIVVEMVLPEDPDDDLETE-VLLLDLNMLVLNGGKERTEKEWR 235
Query: 257 KLF 259
KL
Sbjct: 236 KLL 238
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 9e-11
Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Query: 98 SDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANL 157
S+ + +++ + +G+ ++DVGGG G +S + + FP + T+L+LP + +
Sbjct: 132 SNAKFAIQLLLE---EAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLV 188
Query: 158 PE-------ADNLKYIAGDMF-QFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNG 209
E AD ++ IA D++ + P ADA LF + + ++ + KK A+ S
Sbjct: 189 NENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG- 247
Query: 210 ERGKVIIIDIVIN 222
G+++I+D+VI+
Sbjct: 248 --GRLLILDMVID 258
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 6e-06
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDM-- 170
++D+G G GSL+ ++ FPG + T +DL P ++ E + ++ GD
Sbjct: 3 ARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPD 62
Query: 171 -FQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNG 209
+ DA VF G G D L++L + + G
Sbjct: 63 ALDLLEGFDA-----VFIGGGGGDLLELLDALASLLKPGG 97
|
Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 283 | |||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.82 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.82 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.81 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.81 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.78 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.78 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.77 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.73 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.73 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.72 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.72 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.72 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.7 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.69 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.69 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.68 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.68 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.67 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.67 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.67 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.66 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.66 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.66 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.65 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.65 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.64 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.63 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.63 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.61 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.61 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.59 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.59 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.58 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.57 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.57 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.54 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.54 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.54 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.53 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.53 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.53 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.52 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.52 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.52 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.51 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.5 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.5 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.5 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.49 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.47 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.46 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.45 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.44 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.44 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.43 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.43 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.41 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.41 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.4 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.39 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.36 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.36 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.36 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.34 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.33 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.33 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.33 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.33 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.32 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.32 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.3 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.3 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.3 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.29 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.25 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.23 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.23 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.22 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.21 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.2 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.19 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.19 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.19 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.18 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.16 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.15 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.15 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.14 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.14 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.13 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.11 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.11 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.11 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.1 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.1 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.09 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.09 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.09 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.07 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.06 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.05 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.05 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.05 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.03 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.03 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.02 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.01 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.99 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.91 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.91 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.9 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.89 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.89 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.86 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.81 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.81 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.81 | |
| PLN02366 | 308 | spermidine synthase | 98.8 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.78 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.77 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.77 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.77 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.76 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.75 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.74 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.73 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.73 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.71 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.71 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.7 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.7 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.67 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.66 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.65 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.65 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.62 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.61 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.6 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.59 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.58 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.58 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.57 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.56 | |
| PLN02476 | 278 | O-methyltransferase | 98.55 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.55 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.52 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.5 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 98.47 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.46 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.46 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.46 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.44 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.43 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.42 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.41 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.39 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.39 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.38 | |
| PLN02823 | 336 | spermine synthase | 98.38 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.38 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.38 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.35 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.31 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.29 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.28 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.26 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.25 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.25 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.2 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.18 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.18 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.18 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.17 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.16 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.16 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.12 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.11 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.09 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.08 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.0 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.0 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.99 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.98 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.96 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.92 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.9 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.84 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.79 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.77 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.77 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.74 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.73 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.65 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.63 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.59 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.58 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.58 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.53 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.49 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.42 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.41 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.4 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.36 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.36 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.35 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.34 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.33 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.33 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.32 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.31 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.31 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.28 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.28 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.27 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.25 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.24 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.22 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.19 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.14 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.09 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.08 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.07 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.0 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.0 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.97 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.78 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.77 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.65 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.61 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.6 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.51 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.46 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.45 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.44 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.36 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.32 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 96.31 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.29 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.29 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.23 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.2 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.16 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.03 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.97 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.91 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.89 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.8 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.73 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.66 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.59 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.47 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.43 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.28 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 95.12 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 94.88 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.84 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.64 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.52 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.43 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 94.34 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.94 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.77 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.4 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.18 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 92.86 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 92.84 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 92.29 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 91.88 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 91.67 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 91.64 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 91.31 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 91.22 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 91.05 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 90.99 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 90.93 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 90.89 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 90.74 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 90.43 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.06 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 89.95 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 89.94 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 88.99 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.68 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 88.06 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 87.41 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 87.3 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 87.19 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 87.0 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 86.68 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 85.43 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.39 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 85.13 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 84.93 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 84.72 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 84.33 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 83.94 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 83.34 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 83.07 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 82.09 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 80.8 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 80.74 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 80.59 |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-46 Score=310.65 Aligned_cols=235 Identities=33% Similarity=0.632 Sum_probs=205.6
Q ss_pred CceEecchhcchhhcCCC-CChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhh
Q 023384 19 EEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMA 97 (283)
Q Consensus 19 ~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 97 (283)
++.|+||++|+.|+.+++ .++..++.+...+..+..|.+|.+++++|. ++|...+|.++|+++.++|+..+.|..+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 689999999997666655 577888877666788999999999999998 889999999999999999999999999999
Q ss_pred hhhhhhH-HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCCCC
Q 023384 98 SDTEILT-SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 98 ~~~~~~~-~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~ 176 (283)
..++... ..+.. .++ +++..+|||||||+|.++.++++++|+++++++|+|++++.+++.+||+++.||||+++|.
T Consensus 82 ~~~~~~~~~~~~~-~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 82 EYSRLNAFDILLE-AFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHH-HST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSS
T ss_pred hhhhcchhhhhhc-ccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcc
Confidence 9888877 77777 788 8888999999999999999999999999999999999999888899999999999998888
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCC--cEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGER--GKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 254 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~g--g~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 254 (283)
+|+|+++++||+|+|+++++||++++++|+| | |+|+|+|.++++....+........+|++|++.++|++||.+|
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e 235 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEE 235 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHH
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999999999999999999999999 7 9999999999998877533222358999999998999999999
Q ss_pred HHHHHH
Q 023384 255 WAKLFF 260 (283)
Q Consensus 255 ~~~ll~ 260 (283)
|++||+
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=278.30 Aligned_cols=275 Identities=27% Similarity=0.409 Sum_probs=241.3
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCC-CCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDK-PYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFW 79 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 79 (283)
||.|++++++++.... ...|++++.++++.+++ ..++.++++...++..++.|..+.++++.++ .+|..++|...+
T Consensus 64 lr~L~s~~i~k~~~~~--~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~ 140 (342)
T KOG3178|consen 64 LRLLVSYSILKCRLVG--GEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLG 140 (342)
T ss_pred HHHHHHhhhceeeeec--ceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhh
Confidence 6889999999988620 11799999999666433 4688999998888888999999999999987 688899998899
Q ss_pred hHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 80 EFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 80 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
+|...+......|+++|...+......+++ .+. +|++....||+|||.|..+..++..||+++++.+|+|.+++.+..
T Consensus 141 ~~~~~~~~~~~~~~~sm~~l~~~~~~~il~-~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~ 218 (342)
T KOG3178|consen 141 GYGGADERFSKDFNGSMSFLSTLVMKKILE-VYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPY 218 (342)
T ss_pred hhcccccccHHHHHHHHHHHHHHHHHhhhh-hhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhh
Confidence 999999988999999999999988888888 776 488899999999999999999999999999999999999999887
Q ss_pred C-CCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh-hhhhhhc
Q 023384 160 A-DNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL-TETKFLF 237 (283)
Q Consensus 160 ~-~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~-~~~~~~~ 237 (283)
. ..|+.+.||+|++.|..|+||+.++||||+|++|+++|+||+++|+| +|+|++.|.+.++....... ......+
T Consensus 219 ~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~ 295 (342)
T KOG3178|consen 219 LAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDM 295 (342)
T ss_pred hcCCcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehh
Confidence 5 77999999999999999999999999999999999999999999999 79999999999863322111 1123567
Q ss_pred cccccccc-CCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 238 DIVMSVNA-TGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 238 ~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
|+.|+... +|++|+.+|++.++.++||.+.++.-.+...++|+++|
T Consensus 296 d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 296 DLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 88888875 59999999999999999999999999999999999987
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=241.38 Aligned_cols=248 Identities=20% Similarity=0.360 Sum_probs=175.7
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCCCC----ChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCC
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPY----CLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGI 76 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ 76 (283)
||+|+++|+|++. ++.|+||+.++.+..+++. ++.++..+... .....|.+|.+++|++. +|...+
T Consensus 44 L~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~r~~~--~~~~~~-- 113 (306)
T TIGR02716 44 LETLRQMRVINLE-----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAF-LADDFYMGLSQAVRGQK--NFKGQV-- 113 (306)
T ss_pred HHHHHhCCCeEec-----CCcEecchhHHhhccCCccchhhhcCchHHHHHH-HHHHHHHhHHHHhcCCc--cccccc--
Confidence 6899999999987 5899999999854444332 11233333211 22356899999998543 343222
Q ss_pred chhhHhhcCccHHHHHHHHhh-hhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHh
Q 023384 77 KFWEFMNQNPGINQRFNEAMA-SDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVA 155 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~ 155 (283)
++....++. ..|...|. .......+.+++ .++ +++..+|||||||+|.+++.+++++|+++++++|+|++++
T Consensus 114 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~ 186 (306)
T TIGR02716 114 ---PYPPVTRED-NLYFEEIHRSNAKFAIQLLLE-EAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAID 186 (306)
T ss_pred ---CCCCCCHHH-HHhHHHHHHhcchhHHHHHHH-HcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHH
Confidence 111122222 23444443 333444566666 666 7788899999999999999999999999999999998887
Q ss_pred cCCC-------CCCeEEEEcCCCC-CCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc
Q 023384 156 NLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE 227 (283)
Q Consensus 156 ~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~ 227 (283)
.+++ .+|++++.+|+++ ++|++|+|++++++|+|+++++.++|++++++|+| ||+++|.|.+.++....
T Consensus 187 ~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~~ 263 (306)
T TIGR02716 187 LVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPENP 263 (306)
T ss_pred HHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc
Confidence 6653 5789999999997 77789999999999999999999999999999999 89999999988765432
Q ss_pred hhhhhhh-hhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 228 HELTETK-FLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 228 ~~~~~~~-~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
. +.... ......|.... ...++.+||.++|+++||+.++++
T Consensus 264 ~-~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 264 N-FDYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred h-hhHHHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEec
Confidence 1 11101 11111111111 123458999999999999988764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=154.37 Aligned_cols=161 Identities=19% Similarity=0.331 Sum_probs=82.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCCC--ceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIPP--ADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~--~D~v~~~~ 184 (283)
.....+|||+|||||..+..+++.. |+.+++++|+ +++++.+++ ..+|+++.+|..+ |+++ ||+|+++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4556799999999999999999875 6789999999 889988774 3589999999999 8874 99999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcc--cccccc--cC------------Cc
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD--IVMSVN--AT------------GK 248 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~------------~~ 248 (283)
.||+++|.+ +.|++++++||| ||+++|+|...|+........ ..++. ++.+.. .+ ..
T Consensus 125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~~~~~~~~--~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRNPLLRALY--KFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SSHHHHHHH--HH-----------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCCchhhcee--eeeeccccccccccccccccccccccccccc
Confidence 999999865 679999999999 899999999888764321110 01111 111110 01 12
Q ss_pred cCCHHHHHHHHHHCCCCeeeEEEc-CCcceEEEEeC
Q 023384 249 ERTESEWAKLFFDACFSHYKITPI-FGMRFLIEIYP 283 (283)
Q Consensus 249 ~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 283 (283)
..+.+++.++++++||+.++..+. .|..++..++|
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccCC
Confidence 237889999999999999988776 45677777765
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=145.18 Aligned_cols=161 Identities=17% Similarity=0.284 Sum_probs=122.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCCC--ceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIPP--ADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~--~D~v~~~~vl 186 (283)
..+.+|||||||||..+..+++..+..+++++|+ +.+++.+++ ...++|+.+|..+ |+|+ ||+|.+++.|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3578999999999999999999999999999999 889988875 1239999999999 9984 9999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcc--ccccccc---CC-----------ccC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD--IVMSVNA---TG-----------KER 250 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~-----------~~~ 250 (283)
|+++|.+ +.|++++|+||| ||+++++|...+.......... ..++. ++.+... +. +..
T Consensus 130 rnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~~~~~-~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 130 RNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLRKAYI-LYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhHHHHH-HHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 9999876 779999999999 8999999998887644321111 01111 1111111 11 234
Q ss_pred CHHHHHHHHHHCCCCeeeEEEc-CCcceEEEEeC
Q 023384 251 TESEWAKLFFDACFSHYKITPI-FGMRFLIEIYP 283 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 283 (283)
+.+++.++++++||+.+..... .|...+...+|
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 7899999999999998875444 34455555544
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-20 Score=153.76 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=120.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~v 185 (283)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +++++.+++ ..+++++.+|+.+ +++.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 456799999999999999999974 7899999999 888877754 3578999999998 7778999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhh--hhc---ccc-------cccc-cCCccCCH
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETK--FLF---DIV-------MSVN-ATGKERTE 252 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~--~~~---~~~-------~~~~-~~~~~~t~ 252 (283)
+|++++++...+|++++++|+| ||.+++.|.+.+++....+..... .+. ... .... ..-...|.
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 9999988888999999999999 899999998776544322110000 000 000 0000 01235689
Q ss_pred HHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 253 SEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
+++++++++|||+.+++........++.++|
T Consensus 209 ~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~~ 239 (239)
T TIGR00740 209 ETHKARLKNVGFSHVELWFQCFNFGSLVAVK 239 (239)
T ss_pred HHHHHHHHHcCCchHHHHHHHHhHhHHheeC
Confidence 9999999999999877644444444444443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=144.20 Aligned_cols=160 Identities=21% Similarity=0.210 Sum_probs=120.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCC-CCC--CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-FIP--PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p--~~D~v~ 181 (283)
.....+|||||||+|.++..+++.+ |+.+++++|+ +++++.+++ ..+++++.+|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4566899999999999999998875 6789999999 888877643 2479999999988 776 399999
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc--ccc-cC------------
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM--SVN-AT------------ 246 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~------------ 246 (283)
+..++|++++.. ++|++++++||| ||+++++|...++....++.. ..+....+ +.. .+
T Consensus 151 ~~~~l~~~~d~~--~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDRL--KAMQEMYRVLKP---GSRVSILDFNKSTQPFTTSMQ--EWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCHH--HHHHHHHHHcCc---CcEEEEEECCCCCcHHHHHHH--HHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 999999998765 789999999999 899999998766543221110 00111000 000 00
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEcC-CcceEEEEe
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPIF-GMRFLIEIY 282 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 282 (283)
...++.+|+.++++++||+.++..... +...+.+++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 234689999999999999999887765 566777765
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=143.24 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=117.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--C
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--P 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~ 176 (283)
..+++ .+. +.+..+|||||||+|..+..+++.+ ..+++++|+ +.+++.+++ ..++.++.+|+.+ ++| .
T Consensus 42 ~~~l~-~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 42 TKILS-DIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHH-hCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 34455 554 6777899999999999999998875 679999999 777766554 4689999999987 666 4
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
||+|++..+++|++.++..++|++++++||| ||++++.|............ .... +........+.+++.
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~ 187 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENWDEE--FKAY-----IKKRKYTLIPIQEYG 187 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCcHHH--HHHH-----HHhcCCCCCCHHHHH
Confidence 9999999998888876778999999999999 89999999876543221100 0000 000112345889999
Q ss_pred HHHHHCCCCeeeEEEcC
Q 023384 257 KLFFDACFSHYKITPIF 273 (283)
Q Consensus 257 ~ll~~aGf~~~~~~~~~ 273 (283)
++|+++||+.+++....
T Consensus 188 ~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 188 DLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHCCCCeeeEEeCc
Confidence 99999999999887653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=139.72 Aligned_cols=161 Identities=18% Similarity=0.228 Sum_probs=119.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++.+ |..+++++|+ +++++.+++ .++++++.+|..+ +++ .||+|++..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 5567899999999999999999886 6789999999 777766553 3579999999987 655 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc----------------ccccCCc
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM----------------SVNATGK 248 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 248 (283)
++|++++.. ++|+++.++|+| ||.+++.+...+......... ..++...+ +......
T Consensus 123 ~l~~~~~~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
T TIGR02752 123 GLRNVPDYM--QVLREMYRVVKP---GGKVVCLETSQPTIPGFKQLY--FFYFKYIMPLFGKLFAKSYKEYSWLQESTRD 195 (231)
T ss_pred ccccCCCHH--HHHHHHHHHcCc---CeEEEEEECCCCCChHHHHHH--HHHHcChhHHhhHHhcCCHHHHHHHHHHHHH
Confidence 999988764 789999999999 799998886554432110000 00000000 0000113
Q ss_pred cCCHHHHHHHHHHCCCCeeeEEEcC-CcceEEEEeC
Q 023384 249 ERTESEWAKLFFDACFSHYKITPIF-GMRFLIEIYP 283 (283)
Q Consensus 249 ~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 283 (283)
..+.+++.++|+++||+.+++.... +..++++++|
T Consensus 196 ~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 196 FPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred cCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 3578999999999999999998886 7788888887
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-19 Score=148.64 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=113.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA--FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~ 184 (283)
..+..+|||||||+|..+..+++. .|+.+++++|+ +++++.+++ ..+++++.+|+.+ +.+++|++++..
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~ 133 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 133 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence 346689999999999999999884 68999999999 888887764 3489999999988 777899999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccc---ccc---------ccC--CccC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV---MSV---------NAT--GKER 250 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~--~~~~ 250 (283)
++|++++++...++++++++|+| ||.+++.|.+..+.....+... ..+.++. -+. ... -...
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELLF-NMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 99999988888999999999999 8999999977655433211100 0011110 000 000 1224
Q ss_pred CHHHHHHHHHHCCCCeeeEE
Q 023384 251 TESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~ 270 (283)
|+++..++|++|||+.++..
T Consensus 210 ~~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 210 SVETHKARLHKAGFEHSELW 229 (247)
T ss_pred CHHHHHHHHHHcCchhHHHH
Confidence 88999999999999987654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-17 Score=139.31 Aligned_cols=139 Identities=27% Similarity=0.286 Sum_probs=110.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC--CceEEEecccccCCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~ 190 (283)
...+|||||||+|.++..+++.++..+++++|. +++++.+++ ..+++++.+|+.+ +++ .||+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999998889999999 777777664 4578999999987 655 499999999999999
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
+.+ ++|++++++|+| ||++++++...++.... ....+..+ ...+.+|+.++++++||+.+++.
T Consensus 193 d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~~------r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWLS------RFFADVWM------LFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred CHH--HHHHHHHHhcCC---CcEEEEEEecCcchhHH------HHhhhhhc------cCCCHHHHHHHHHHCCCeEEEEE
Confidence 876 689999999999 89998887655432111 11111111 12478999999999999999887
Q ss_pred EcC
Q 023384 271 PIF 273 (283)
Q Consensus 271 ~~~ 273 (283)
...
T Consensus 256 ~i~ 258 (340)
T PLN02490 256 RIG 258 (340)
T ss_pred EcC
Confidence 753
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=134.20 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=108.5
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-C-CCCceEEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-F-IPPADAFL 181 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~-~p~~D~v~ 181 (283)
..+++ .+. .....+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ .+++++.+|+.+ + .+.||+|+
T Consensus 19 ~~ll~-~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLA-RVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHH-hCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEE
Confidence 34455 554 55678999999999999999999999999999999 888888764 468899999876 3 23599999
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhh----hhccc-ccc-cccCCccCCHHHH
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETK----FLFDI-VMS-VNATGKERTESEW 255 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~----~~~~~-~~~-~~~~~~~~t~~e~ 255 (283)
+..++|++++.. ++|++++++|+| ||++++......+..... ..... .+... ... ...+....+.+++
T Consensus 95 ~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 95 SNAALQWVPEHA--DLLVRWVDELAP---GSWIAVQVPGNFDAPSHA-AVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred EehhhhhCCCHH--HHHHHHHHhCCC---CcEEEEEcCCCcCChhHH-HHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 999999998764 789999999999 788887642211111000 00000 01000 000 0112334589999
Q ss_pred HHHHHHCCCCeee
Q 023384 256 AKLFFDACFSHYK 268 (283)
Q Consensus 256 ~~ll~~aGf~~~~ 268 (283)
.++|+++||++..
T Consensus 169 ~~~l~~aGf~v~~ 181 (255)
T PRK14103 169 AELLTDAGCKVDA 181 (255)
T ss_pred HHHHHhCCCeEEE
Confidence 9999999998543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=138.66 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999988 789999999 777765543 3589999999988 665 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch-hhh-hhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH-ELT-ETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+||++|.. +++++++++||| ||+++|.+.......... ... ......+-...........+.++|.++++++|
T Consensus 196 ~~h~~d~~--~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDKR--KFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCHH--HHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 99998864 789999999999 899999886543221110 000 00000000000000112347999999999999
Q ss_pred CCeeeEEEcC
Q 023384 264 FSHYKITPIF 273 (283)
Q Consensus 264 f~~~~~~~~~ 273 (283)
|..+++....
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999887653
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-16 Score=129.16 Aligned_cols=160 Identities=18% Similarity=0.238 Sum_probs=118.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~ 183 (283)
..+..+|||||||+|.++..+++.+| +.+++++|+ +..++.+++ ..++.++.+|+.+ +.+ .||+|++.
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 34568999999999999999999998 789999999 666665544 3578999999987 443 49999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccc-----cccC------------
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS-----VNAT------------ 246 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~------------ 246 (283)
.++|++++.. .+|+++.++|+| ||.+++++...+...... .........++ ...+
T Consensus 129 ~~l~~~~~~~--~~l~~~~~~L~~---gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (239)
T PRK00216 129 FGLRNVPDID--KALREMYRVLKP---GGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAEAYSYLAESI 200 (239)
T ss_pred cccccCCCHH--HHHHHHHHhccC---CcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHH
Confidence 9999988754 789999999999 799999987765442111 00000000000 0000
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEcC-CcceEEEEeC
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPIF-GMRFLIEIYP 283 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 283 (283)
...++.++|.++++++||+.+++.... +...++.++|
T Consensus 201 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 201 RAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578999999999999999998864 6788988876
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=128.23 Aligned_cols=146 Identities=21% Similarity=0.304 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC------CeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCC-CCCC--c
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG------IKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-FIPP--A 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p~--~ 177 (283)
....++||++||||..+..+++..++ .+++++|+ |+++..+++ ..++.++++|..+ |+|+ +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34589999999999999999999887 78999999 999876654 3569999999999 9984 9
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-ccccc-c-C--------
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSVN-A-T-------- 246 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-~-------- 246 (283)
|.|.+..-+.+|++.+ +.|++++|+||| ||++.++|+..-++.....+.. ...++. ..+.. . +
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~l~~fy~-~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEPLKWFYD-QYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHHHHHHHH-hhhhhhhchhhHhhhhhHhhhhhH
Confidence 9999999999999976 889999999999 8999999976655322111111 111111 11110 0 0
Q ss_pred ----CccCCHHHHHHHHHHCCCCeee
Q 023384 247 ----GKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 247 ----~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
.+..+.+|++.+.++|||+.+.
T Consensus 253 veSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1334789999999999999876
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-16 Score=127.16 Aligned_cols=160 Identities=15% Similarity=0.146 Sum_probs=117.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
.....+|||+|||+|..+..+++.+|. .+++++|+ +..++.+++ ..++.++.+|+.+ +.+ .||+|++..++
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 345689999999999999999999987 79999999 677666543 3578999999988 544 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccccc--------C---------Ccc
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNA--------T---------GKE 249 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---------~~~ 249 (283)
|+.++. ..+|+++++.|+| ||++++++...+...... .........++... + ...
T Consensus 117 ~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (223)
T TIGR01934 117 RNVTDI--QKALREMYRVLKP---GGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAF 188 (223)
T ss_pred CCcccH--HHHHHHHHHHcCC---CcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhC
Confidence 988775 4789999999999 899999887655432110 00000000000000 0 123
Q ss_pred CCHHHHHHHHHHCCCCeeeEEEcCC-cceEEEEeC
Q 023384 250 RTESEWAKLFFDACFSHYKITPIFG-MRFLIEIYP 283 (283)
Q Consensus 250 ~t~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 283 (283)
.+.++|.++|+++||+.+++.+..+ ...+++++|
T Consensus 189 ~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 189 PSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 4789999999999999999988865 467788775
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=142.62 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=113.6
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--Cc
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PA 177 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~ 177 (283)
+++ .+. .+...+|||||||+|..+..+++.+ +.+++++|+ +++++.+++ ..+++|+.+|+++ ++| .|
T Consensus 258 l~~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 258 FVD-KLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHH-hcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 444 444 4566799999999999999998876 779999999 777776643 4589999999998 665 39
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
|+|++..+++|+++.. ++|++++++|+| ||++++.+.........+.. ... +...+...++.+++.+
T Consensus 334 D~I~s~~~l~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~---~~~-----~~~~g~~~~~~~~~~~ 400 (475)
T PLN02336 334 DVIYSRDTILHIQDKP--ALFRSFFKWLKP---GGKVLISDYCRSPGTPSPEF---AEY-----IKQRGYDLHDVQAYGQ 400 (475)
T ss_pred EEEEECCcccccCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCCcHHH---HHH-----HHhcCCCCCCHHHHHH
Confidence 9999999999998865 789999999999 79999998766543222101 111 1112345678999999
Q ss_pred HHHHCCCCeeeEEE
Q 023384 258 LFFDACFSHYKITP 271 (283)
Q Consensus 258 ll~~aGf~~~~~~~ 271 (283)
+++++||+++++..
T Consensus 401 ~l~~aGF~~i~~~d 414 (475)
T PLN02336 401 MLKDAGFDDVIAED 414 (475)
T ss_pred HHHHCCCeeeeeec
Confidence 99999999987654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=128.53 Aligned_cols=135 Identities=18% Similarity=0.225 Sum_probs=106.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC-CceEEEecccccCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGL 189 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~ 189 (283)
++|||||||+|..+..+++.+|+.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777665553 4688999999976 555 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
++. ..+|++++++|+| ||.+++.+...+...... .. .......+.++|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~-----~~--------~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAIE-----HE--------ETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCcccc-----cc--------ccccccCCHHHHHHHHHHCCCeEEEe
Confidence 875 4889999999999 799999887533211000 00 00112457899999999999999987
Q ss_pred EEc
Q 023384 270 TPI 272 (283)
Q Consensus 270 ~~~ 272 (283)
...
T Consensus 143 ~~~ 145 (224)
T smart00828 143 VDA 145 (224)
T ss_pred EEC
Confidence 765
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-16 Score=133.47 Aligned_cols=144 Identities=15% Similarity=0.098 Sum_probs=104.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-------CCCCeEEEEcCCCC-CCC-CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP-------EADNLKYIAGDMFQ-FIP-PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh 187 (283)
...+|||||||+|.++..+++..+. +++++|. +..+..++ ...++.++.+|+.+ +.+ .||+|++..+||
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999998766 5999998 54443211 14579999999987 654 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
|..+.. .+|++++++|+| ||.+++-+.+.+...... ......+..+.. .-..++.+++.++|+++||+.+
T Consensus 201 H~~dp~--~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~~~~----~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 201 HRRSPL--DHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAKMRN----VYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred ccCCHH--HHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhcCcc----ceeCCCHHHHHHHHHHcCCceE
Confidence 988764 789999999999 788877666555433211 000001111000 0113589999999999999999
Q ss_pred eEEEc
Q 023384 268 KITPI 272 (283)
Q Consensus 268 ~~~~~ 272 (283)
++...
T Consensus 271 ~~~~~ 275 (322)
T PRK15068 271 RIVDV 275 (322)
T ss_pred EEEeC
Confidence 88754
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=130.22 Aligned_cols=145 Identities=19% Similarity=0.323 Sum_probs=111.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
+....+|||||||+|..+..+++.. +..+++++|+ +++++.+++ ..++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5667899999999999988777764 6678999999 888877764 3589999999987 665 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
++|++++.. +++++++++||| ||++++.+......... ....++.++....+...+.+++.++|+++||
T Consensus 155 v~~~~~d~~--~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKP---GGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCC---CcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 999888754 789999999999 89999998776443211 1112222222233456689999999999999
Q ss_pred CeeeEEE
Q 023384 265 SHYKITP 271 (283)
Q Consensus 265 ~~~~~~~ 271 (283)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9987643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-16 Score=114.11 Aligned_cols=97 Identities=26% Similarity=0.512 Sum_probs=81.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCC-CC-CC-CCceEEEecc-cc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDM-FQ-FI-PPADAFLFKL-VF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~-~~-~~-p~~D~v~~~~-vl 186 (283)
..+|||||||+|.++..+++.+|..+++++|+ |++++.+++ .+|++++.+|+ .. +. +.||+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 47999999999999999999999999999999 888776654 68999999999 33 33 3599999999 66
Q ss_pred cCCCh-hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGD-EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|++.+ ++..++|+++++.|+| ||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 65543 6778999999999999 78877754
|
... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-16 Score=122.57 Aligned_cols=136 Identities=26% Similarity=0.350 Sum_probs=100.8
Q ss_pred CCCeEEEEcCCccHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIIS-EAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~~v 185 (283)
...+|||+|||+|.++..++ +.+|+.+++++|+ +++++.+++ .++++|+.+|+++ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 45899999999999999999 5688999999999 888887765 4589999999999 5 43 6999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhh--hcccccccccCCccCCHHHHHHHHHHCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF--LFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+|++++.. .+|+++++.|++ +|.+++.+....+..... ...... .-.+.+.. .+. +.++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPEQ-LEELMNLYSEVWSMIY--IGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHHH-HHHHHHHHHHHHHHCC-------CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHHH-HHHHHHHHHHHhhhhh--ccc--CHHHHHHHHHhcC
Confidence 99999875 789999999999 799888887732221110 100000 11111111 122 7889999999998
|
... |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=130.02 Aligned_cols=145 Identities=13% Similarity=0.069 Sum_probs=103.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CCCCCeEEEEcCCCC-CC-CCceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL-------PEADNLKYIAGDMFQ-FI-PPADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~rv~~~~~d~~~-~~-p~~D~v~~~~vl 186 (283)
....+|||||||+|.++..++...+. .++++|. +.++..+ ....++.+..+++.+ +. ..||+|++..+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 34589999999999999999988664 7999998 5554332 114678888888876 43 359999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
||+.+.. ..|++++++|+| ||.+++.+.+.+...... ......+. .|.. .-...+.+++.++|+++||+.
T Consensus 199 ~H~~dp~--~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~-l~p~~ry~--k~~n--v~flpS~~~L~~~L~~aGF~~ 268 (314)
T TIGR00452 199 YHRKSPL--EHLKQLKHQLVI---KGELVLETLVIDGDLNTV-LVPKDRYA--KMKN--VYFIPSVSALKNWLEKVGFEN 268 (314)
T ss_pred hccCCHH--HHHHHHHHhcCC---CCEEEEEEEEecCccccc-cCchHHHH--hccc--cccCCCHHHHHHHHHHCCCeE
Confidence 9998764 789999999999 799888777665432110 00000000 0000 011348899999999999999
Q ss_pred eeEEEc
Q 023384 267 YKITPI 272 (283)
Q Consensus 267 ~~~~~~ 272 (283)
+++...
T Consensus 269 V~i~~~ 274 (314)
T TIGR00452 269 FRILDV 274 (314)
T ss_pred EEEEec
Confidence 988654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=122.26 Aligned_cols=140 Identities=22% Similarity=0.219 Sum_probs=105.5
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p- 175 (283)
+.+++ .++ .....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++
T Consensus 20 ~~l~~-~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 94 (197)
T PRK11207 20 SEVLE-AVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG 94 (197)
T ss_pred HHHHH-hcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence 34445 444 445589999999999999999986 568999999 777776653 2458888899887 555
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
.||+|++..++|++++++...++++++++|+| ||.+++++.+.++....+ .. ....++.+|+
T Consensus 95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~el 156 (197)
T PRK11207 95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT--------VG-------FPFAFKEGEL 156 (197)
T ss_pred CcCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC--------CC-------CCCccCHHHH
Confidence 49999999999999988889999999999999 798877775544322110 00 0123578899
Q ss_pred HHHHHHCCCCeeeE
Q 023384 256 AKLFFDACFSHYKI 269 (283)
Q Consensus 256 ~~ll~~aGf~~~~~ 269 (283)
.++++ ||++++.
T Consensus 157 ~~~~~--~~~~~~~ 168 (197)
T PRK11207 157 RRYYE--GWEMVKY 168 (197)
T ss_pred HHHhC--CCeEEEe
Confidence 99997 8988765
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=139.36 Aligned_cols=145 Identities=19% Similarity=0.306 Sum_probs=111.5
Q ss_pred CCchhhHhhcCccHHHHHHHHhhhhhhhh--HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-h
Q 023384 75 GIKFWEFMNQNPGINQRFNEAMASDTEIL--TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-P 151 (283)
Q Consensus 75 g~~~~~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~ 151 (283)
...+|+++...++....|...|....... ...... .++ +....+|||||||+|..+..+++.+|+.+++++|+ +
T Consensus 376 ~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~-i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~ 452 (677)
T PRK06922 376 NVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRI-ILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE 452 (677)
T ss_pred HhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHH-Hhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH
Confidence 34788998888888888876665432221 111122 334 44678999999999999999999999999999999 7
Q ss_pred HHHhcCCC-----CCCeEEEEcCCCC-C--CC--CceEEEecccccCC-----------ChhHHHHHHHHHHHhhccCCC
Q 023384 152 HVVANLPE-----ADNLKYIAGDMFQ-F--IP--PADAFLFKLVFHGL-----------GDEDGLKILKKRRAAIASNGE 210 (283)
Q Consensus 152 ~~~~~a~~-----~~rv~~~~~d~~~-~--~p--~~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~~L~p~~~ 210 (283)
.+++.+++ ..++.++.+|..+ + ++ .||+|+++.++|+| ++++..++|++++++|||
T Consensus 453 ~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP--- 529 (677)
T PRK06922 453 NVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP--- 529 (677)
T ss_pred HHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---
Confidence 77776653 3467889999876 4 43 49999999999986 346788999999999999
Q ss_pred CcEEEEEeeecCCCc
Q 023384 211 RGKVIIIDIVINAEE 225 (283)
Q Consensus 211 gg~lli~d~~~~~~~ 225 (283)
||++++.|.+.++..
T Consensus 530 GGrLII~D~v~~E~~ 544 (677)
T PRK06922 530 GGRIIIRDGIMTEDK 544 (677)
T ss_pred CcEEEEEeCccCCch
Confidence 899999998766543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=9e-16 Score=132.77 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
...+|||||||+|.++..+++ ++.+++++|. +++++.+++ ..+++++.+|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346899999999999998876 4789999999 888877653 2479999999876 543 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc-ccCCccCCHHHHHHHHHHCCCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-NATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
||+.|.. .+|++++++||| ||.+++.+....................+.--. ....+.++.+|+.++|+++||+
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 9999876 789999999999 788887764322100000000000001100000 0113467999999999999999
Q ss_pred eeeEEE
Q 023384 266 HYKITP 271 (283)
Q Consensus 266 ~~~~~~ 271 (283)
++++.-
T Consensus 284 i~~~~G 289 (322)
T PLN02396 284 VKEMAG 289 (322)
T ss_pred EEEEee
Confidence 988743
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=119.11 Aligned_cols=135 Identities=18% Similarity=0.190 Sum_probs=96.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CC--CCceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FI--PPADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~--p~~D~v~~~~vlh~~~d 191 (283)
.....+|||||||+|.++..+++... +++++|+ +.+++. ..+.....+... +. ..||+|++..+||++++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999966633 9999999 777766 223333222223 22 35999999999999997
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc--cCCccCCHHHHHHHHHHCCCCeee
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN--ATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
. ..+|+++++.||| ||.+++.++........ ....+.+... .....++.++|+++++++||++++
T Consensus 94 ~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 P--EEFLKELSRLLKP---GGYLVISDPNRDDPSPR-------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHCEEE---EEEEEEEEEBTTSHHHH-------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred H--HHHHHHHHHhcCC---CCEEEEEEcCCcchhhh-------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4 5889999999999 78888888765431111 1111111111 234677999999999999999875
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-15 Score=123.32 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=106.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
+....+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++ ..++.+..+|+.+ +++ .||+|++.++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 5667899999999999999999998 7889999999 666665543 4678999999887 554 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh-hhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL-TETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
+|++++.. .++++++++|+| ||.+++.+.........+.. ........ .+........+..+|.++++++||
T Consensus 97 ~~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf 169 (241)
T PRK08317 97 LQHLEDPA--RALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILN--FWSDHFADPWLGRRLPGLFREAGL 169 (241)
T ss_pred hhccCCHH--HHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHcCC
Confidence 99998865 779999999999 79999887532211100000 00000000 111112234456789999999999
Q ss_pred CeeeEEE
Q 023384 265 SHYKITP 271 (283)
Q Consensus 265 ~~~~~~~ 271 (283)
+.+++..
T Consensus 170 ~~~~~~~ 176 (241)
T PRK08317 170 TDIEVEP 176 (241)
T ss_pred CceeEEE
Confidence 9876643
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-15 Score=126.21 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=104.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--CCC--CceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--FIP--PADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~~p--~~D~v~~~~ 184 (283)
+...+|||||||+|.++..+++. +.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 44579999999999999999987 578999999 888877764 3578999999866 233 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhh--hhhhcccc---cccccCCccCCHHHHHHHH
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE--TKFLFDIV---MSVNATGKERTESEWAKLF 259 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~t~~e~~~ll 259 (283)
+||++++.. .+|+++.++||| ||.++++............... ......+. ..........+.+++.+++
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 999998775 789999999999 7888876543221100000000 00000000 0000112346889999999
Q ss_pred HHCCCCeeeEEEcCC
Q 023384 260 FDACFSHYKITPIFG 274 (283)
Q Consensus 260 ~~aGf~~~~~~~~~~ 274 (283)
+++||+++++.-+..
T Consensus 196 ~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 196 EEAGWQIMGKTGVRV 210 (255)
T ss_pred HHCCCeEeeeeeEEE
Confidence 999999987655433
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=119.05 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=107.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCChhH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDED 193 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~ 193 (283)
...+|||||||+|..+..+++.+ +.+++++|+ +++++.+++. ..++.+|+.+ |++ .||+|++..+||+++|.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~ 127 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE 127 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCHH
Confidence 46799999999999999999987 679999999 8899888653 3467889888 766 399999999999998865
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-cCC-------------ccCCHHHHHHHH
Q 023384 194 GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATG-------------KERTESEWAKLF 259 (283)
Q Consensus 194 ~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~~~t~~e~~~ll 259 (283)
+.|++++++||| . +.++|...++......+...-...-++.+.. .++ ...+.+++.+++
T Consensus 128 --~~l~e~~RvLkp---~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~ 200 (226)
T PRK05785 128 --KVIAEFTRVSRK---Q--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIF 200 (226)
T ss_pred --HHHHHHHHHhcC---c--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 779999999998 2 3455655544322110100000001111111 111 123789999999
Q ss_pred HHCCCCeeeEEEcC-CcceEEEEeC
Q 023384 260 FDACFSHYKITPIF-GMRFLIEIYP 283 (283)
Q Consensus 260 ~~aGf~~~~~~~~~-~~~~~i~~~~ 283 (283)
+++| +.++..... |..++.+++|
T Consensus 201 ~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 201 EKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHh-CceEEEEccccEEEEEEEee
Confidence 9984 667776664 5677887765
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=120.13 Aligned_cols=183 Identities=10% Similarity=0.072 Sum_probs=120.5
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHh
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA 155 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 155 (283)
..|+.+...+.....+...|..........+++ .+........+|||||||+|.++..+++. +.+++++|+ ++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~ 91 (219)
T TIGR02021 15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLD-WLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQ 91 (219)
T ss_pred HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHH
Confidence 345556665555555566554444344444454 33211234689999999999999999876 568999999 88887
Q ss_pred cCCC-------CCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch
Q 023384 156 NLPE-------ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH 228 (283)
Q Consensus 156 ~a~~-------~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~ 228 (283)
.+++ ..++.+..+|+.+....||+|++..+++++++++...+++++.+.+++ +.++.+. +......
T Consensus 92 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~----~~~i~~~---~~~~~~~ 164 (219)
T TIGR02021 92 MARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE----RVIFTFA---PKTAWLA 164 (219)
T ss_pred HHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC----CEEEEEC---CCchHHH
Confidence 7654 248999999998733669999999999999888788899999998886 4433332 1111110
Q ss_pred hhhhhhhhccccccc---ccCCccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 229 ELTETKFLFDIVMSV---NATGKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 229 ~~~~~~~~~~~~~~~---~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
. ...+.-.... ...-..++.+++.++++++||++++.....
T Consensus 165 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 165 ---F-LKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred ---H-HHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 0 0000000000 011234589999999999999999876553
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-15 Score=124.58 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=108.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~ 176 (283)
..+++ .++ ++++.+|||||||.|.+++.+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.+.
T Consensus 52 ~~~~~-~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 52 DLLCE-KLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHT-TTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHH-HhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 45566 666 7888999999999999999999998 899999999 666554432 57899999998873337
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
||.|++...+.|+..+....+++++.+.|+| ||++++......+............++.-. ...+|...+.+++.
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~~~~~~~~~i~ky--iFPgg~lps~~~~~ 202 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHAERRSSSDFIRKY--IFPGGYLPSLSEIL 202 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHHCTTCCCHHHHHH--TSTTS---BHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchhhcCCCceEEEEe--eCCCCCCCCHHHHH
Confidence 9999999999999988888999999999999 799888777766543221000000111111 12467777899999
Q ss_pred HHHHHCCCCeeeEEEc
Q 023384 257 KLFFDACFSHYKITPI 272 (283)
Q Consensus 257 ~ll~~aGf~~~~~~~~ 272 (283)
..++++||++.++...
T Consensus 203 ~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHTT-EEEEEEE-
T ss_pred HHHhcCCEEEEEEEEc
Confidence 9999999998887654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-14 Score=120.72 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=106.2
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CC-CCceEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FI-PPADAF 180 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~-p~~D~v 180 (283)
..++. .++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++.++.+|+.+ .. ..||+|
T Consensus 21 ~~ll~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 21 RDLLA-RVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHh-hCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 44555 554 56678999999999999999999999999999999 888887765 5678999999977 32 259999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhh---hhhcccccc-cc---cCCccCCHH
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTET---KFLFDIVMS-VN---ATGKERTES 253 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~---~~~~~~~~~-~~---~~~~~~t~~ 253 (283)
+++.++|+.+|.. ++|++++++|+| ||.+++.- ++....+..... .....+... .. ......+.+
T Consensus 98 ~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~~~~~~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 169 (258)
T PRK01683 98 FANASLQWLPDHL--ELFPRLVSLLAP---GGVLAVQM---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPH 169 (258)
T ss_pred EEccChhhCCCHH--HHHHHHHHhcCC---CcEEEEEC---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHH
Confidence 9999999888754 789999999999 78877742 222111100000 000000000 00 012335778
Q ss_pred HHHHHHHHCCCCe
Q 023384 254 EWAKLFFDACFSH 266 (283)
Q Consensus 254 e~~~ll~~aGf~~ 266 (283)
++.+++.++|+.+
T Consensus 170 ~~~~~l~~~g~~v 182 (258)
T PRK01683 170 AYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHhCCCce
Confidence 9999999999864
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=118.19 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEA----FPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
.+..+|||||||+|.++..+++. .|+.+++++|+ +++++.+++ ..++++...+... +.+ .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999888764 46679999999 888887765 3456666655443 322 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC-----CccCCHHHHHHHHH
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT-----GKERTESEWAKLFF 260 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~ 260 (283)
|||+++++...+|++++++++ |.+++.|...+.....- +........-..+.... -+.++.+|+.++++
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLAYAL-FWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHHHHH-HHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 999999888899999999987 46666665554211100 00000000000000111 24569999999999
Q ss_pred HCCCCeeeEEEc
Q 023384 261 DACFSHYKITPI 272 (283)
Q Consensus 261 ~aGf~~~~~~~~ 272 (283)
+ ||++...++.
T Consensus 213 ~-Gf~~~~~~~~ 223 (232)
T PRK06202 213 Q-GWRVERQWPF 223 (232)
T ss_pred C-CCeEEeccce
Confidence 9 9997766543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=115.23 Aligned_cols=133 Identities=20% Similarity=0.174 Sum_probs=99.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh 187 (283)
.....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ .-++.+...|+.. +++ .||+|++..++|
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~ 105 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFSTVVFM 105 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEEecccc
Confidence 344579999999999999999985 578999999 777776543 2246777788765 444 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
++++++...++++++++|+| ||.+++++....+....+ . ......+++|+.++++ +|+++
T Consensus 106 ~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~--------~-------~~~~~~~~~el~~~f~--~~~~~ 165 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCH--------M-------PFSFTFKEDELRQYYA--DWELL 165 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCC--------C-------CcCccCCHHHHHHHhC--CCeEE
Confidence 99888888999999999999 799888775543221110 0 0012357899999986 58877
Q ss_pred eEE
Q 023384 268 KIT 270 (283)
Q Consensus 268 ~~~ 270 (283)
...
T Consensus 166 ~~~ 168 (195)
T TIGR00477 166 KYN 168 (195)
T ss_pred Eee
Confidence 654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=112.02 Aligned_cols=162 Identities=12% Similarity=0.094 Sum_probs=121.9
Q ss_pred cCCCC-eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC----C--CCCeE-EEEcCCCCC---CC--------
Q 023384 116 FEGLG-SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP----E--ADNLK-YIAGDMFQF---IP-------- 175 (283)
Q Consensus 116 ~~~~~-~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~--~~rv~-~~~~d~~~~---~p-------- 175 (283)
++... +||+||+|||..+..+++.+|+++..-.|. +....... + ..++. -+..|..++ .+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 44445 499999999999999999999999988887 33321111 1 22221 234455542 11
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-cCCccCCHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESE 254 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e 254 (283)
.||+|++.+++|..+-+.+..+++.+.++|+| ||.+++.-++..+....+ .....+|...-.. .....|+.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 48999999999999999999999999999999 799999998877654322 2334555554443 2456789999
Q ss_pred HHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 255 WAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
+.++.+++||+..+++.+|...-+++.+|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998877777775
|
The function of this family is unknown. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.4e-15 Score=104.11 Aligned_cols=88 Identities=20% Similarity=0.402 Sum_probs=75.1
Q ss_pred EEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCCC--ceEEEecccccCCChhHHH
Q 023384 123 VDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIPP--ADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 123 lDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~--~D~v~~~~vlh~~~d~~~~ 195 (283)
||||||+|..+..+++. +..+++++|. +++++.+++ ..++.+..+|+.+ ++++ ||+|++.+++|++++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence 89999999999999999 9999999999 777777665 5667799999998 7773 999999999999944 46
Q ss_pred HHHHHHHHhhccCCCCcEEEE
Q 023384 196 KILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli 216 (283)
+++++++++||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 889999999999 788765
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-14 Score=118.69 Aligned_cols=156 Identities=21% Similarity=0.263 Sum_probs=124.2
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP 175 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p 175 (283)
...+++ .+. +.++.+|||||||-|.+++..+++| +.+++++++ ++..+.+++ .++++++..|+.+..+
T Consensus 61 ~~~~~~-kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 61 LDLILE-KLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHHHH-hcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence 345566 666 8899999999999999999999999 999999999 666665554 5689999999987444
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
.||-|++...++|+..+.-...++++++.|+| ||++++.....++..... ...+..- ....+|...+.+++
T Consensus 137 ~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~~----~~~~i~~--yiFPgG~lPs~~~i 207 (283)
T COG2230 137 PFDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFRR----FPDFIDK--YIFPGGELPSISEI 207 (283)
T ss_pred ccceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCccccc----chHHHHH--hCCCCCcCCCHHHH
Confidence 59999999999999998889999999999999 799999998877644310 0011111 11247788889999
Q ss_pred HHHHHHCCCCeeeEEEc
Q 023384 256 AKLFFDACFSHYKITPI 272 (283)
Q Consensus 256 ~~ll~~aGf~~~~~~~~ 272 (283)
.+..+++||.+.++...
T Consensus 208 ~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 208 LELASEAGFVVLDVESL 224 (283)
T ss_pred HHHHHhcCcEEehHhhh
Confidence 99999999998876544
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.1e-14 Score=116.57 Aligned_cols=135 Identities=19% Similarity=0.282 Sum_probs=102.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-CCC--CceEEEecccccCCChh
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~ 192 (283)
..+|||||||+|.++..+++.+|..+++++|+ ++.+..+++ .+++.++.+|+.+ +++ .||+|++..++|+..+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 47899999999999999999999999999999 777766554 4578999999988 544 49999999999988775
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
. ++|++++++|+| ||.+++.+......... .... ...+....+.++|.++++++ |+...+.
T Consensus 115 ~--~~l~~~~~~L~~---~G~l~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 115 S--QALSELARVLKP---GGLLAFSTFGPGTLHEL------RQSF-----GQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHcCC---CcEEEEEeCCccCHHHH------HHHH-----HHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 789999999999 78888876433221100 0000 00223456889999999998 8876653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-13 Score=117.63 Aligned_cols=98 Identities=17% Similarity=0.306 Sum_probs=78.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC--CC-Cc-----e
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF--IP-PA-----D 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~--~p-~~-----D 178 (283)
.+...+|||+|||+|..+..++++.+ ..+++++|+ +++++.+.+ ..++.++.+|+.+. .+ .+ .
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 34557899999999999999999987 689999999 777766543 23567789999873 33 22 3
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++++...+|+++++++.++|++++++|+| ||.++|
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 55666899999999999999999999999 677765
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-15 Score=108.28 Aligned_cols=87 Identities=28% Similarity=0.480 Sum_probs=58.0
Q ss_pred EEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC---CeEEEEcCCCCC-CC-CceEEEecccccCCC
Q 023384 123 VDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------AD---NLKYIAGDMFQF-IP-PADAFLFKLVFHGLG 190 (283)
Q Consensus 123 lDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---rv~~~~~d~~~~-~p-~~D~v~~~~vlh~~~ 190 (283)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...|.++. .+ .||+|++..+||+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 888877776 22 334444455442 33 699999999999994
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
+ ...+|+++++.|+| ||++
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 45899999999999 6764
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=112.12 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=88.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCCCC--CceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQFIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~~d 191 (283)
.....+|||||||+|..+..+++..|..+++++|+ +++++.+++ ..++++..+|+.++++ .||+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45667899999999999999999989999999999 888888876 4678899999888654 4999999999999998
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
++..++++++.++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 888899999999865 688888876544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=112.09 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCCceEEEecccccC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPPADAFLFKLVFHG 188 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 188 (283)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++.+..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999874 46999999 777776654 25899999995434346999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-ccc-cccCCccCCHHHHHHHHHHCCCCe
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMS-VNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
+++++...+++++.+.+++ +.++... +...... ........ .-. ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~---~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG----SLIFTFA---PYTPLLA---LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC----eEEEEEC---CccHHHH---HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 9999989999999987654 4443322 1111100 00000000 000 001234458899999999999999
Q ss_pred eeEEEcC
Q 023384 267 YKITPIF 273 (283)
Q Consensus 267 ~~~~~~~ 273 (283)
.++.+..
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9887764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=109.58 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=93.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC-CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh 187 (283)
.....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 55678999999999999999999999999999999 777776654 3578999999865544 499999977654
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
+ ...+++.+.+.|+| ||++++..... -+.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLHP---GGRLVLTFILL----------------------------ENLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcCC---CeEEEEEEecH----------------------------hhHHHHHHHHHHCCCCcc
Confidence 3 34678999999999 78876643211 025677889999999877
Q ss_pred eEE
Q 023384 268 KIT 270 (283)
Q Consensus 268 ~~~ 270 (283)
+++
T Consensus 153 ~~~ 155 (187)
T PRK08287 153 DCV 155 (187)
T ss_pred eEE
Confidence 653
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.8e-14 Score=110.73 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=119.0
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC--CCCCceEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ--FIPPADAF 180 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~--~~p~~D~v 180 (283)
..++. ..+ .....+|+|+|||+|..+..|++++|...++++|. +++++.|++ ..+++|..+|.-+ |-+..|++
T Consensus 20 ~dLla-~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 20 RDLLA-RVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHh-hCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 34455 555 66778999999999999999999999999999999 999998876 7889999999988 34469999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhc---ccccccc----cCCccCCHH
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLF---DIVMSVN----ATGKERTES 253 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~t~~ 253 (283)
+.+.+||.++|-- ++|.++...|.| ||.+.+.= |++..++......... -+..... ......+..
T Consensus 97 faNAvlqWlpdH~--~ll~rL~~~L~P---gg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 97 FANAVLQWLPDHP--ELLPRLVSQLAP---GGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred hhhhhhhhccccH--HHHHHHHHhhCC---CceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 9999999888864 889999999999 67665543 3333332110000000 0111111 123345889
Q ss_pred HHHHHHHHCCCCeeeEEEc------CCcceEEEEeC
Q 023384 254 EWAKLFFDACFSHYKITPI------FGMRFLIEIYP 283 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~~~~------~~~~~~i~~~~ 283 (283)
.|-++|...+-+ ++++.+ ++...|++++|
T Consensus 169 ~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 169 AYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHhCcccce-eeeeeeeccccCCCccchhhhee
Confidence 999999888743 455433 45677887765
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-13 Score=112.43 Aligned_cols=148 Identities=19% Similarity=0.211 Sum_probs=102.8
Q ss_pred hHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--Cc
Q 023384 103 LTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PA 177 (283)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~ 177 (283)
.+..+++ .++ .....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ...+.++.+|+.+ +++ .|
T Consensus 30 ~a~~l~~-~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 30 SADALLA-MLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHH-hcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 3344455 444 335679999999999999888764 578999999 888887765 3346788999987 665 49
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
|+|++..++|..++. ..+|++++++|+| ||.+++.......... + ...+..+. .........+.+++.+
T Consensus 105 D~V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~e---l--~~~~~~~~-~~~~~~~~~~~~~l~~ 173 (251)
T PRK10258 105 DLAWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSLPE---L--HQAWQAVD-ERPHANRFLPPDAIEQ 173 (251)
T ss_pred EEEEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCchHH---H--HHHHHHhc-cCCccccCCCHHHHHH
Confidence 999999999877765 4789999999999 7888876654322111 0 00111000 0011234568899999
Q ss_pred HHHHCCCCe
Q 023384 258 LFFDACFSH 266 (283)
Q Consensus 258 ll~~aGf~~ 266 (283)
++.+.|+..
T Consensus 174 ~l~~~~~~~ 182 (251)
T PRK10258 174 ALNGWRYQH 182 (251)
T ss_pred HHHhCCcee
Confidence 999888764
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-13 Score=106.46 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCCCceEEEecccccCCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLG 190 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~ 190 (283)
...+|||+|||+|.++..+++..+ +++++|+ +++++.+++ ..+++++.+|.++ ..+.||+|++...+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 447899999999999999999876 8999999 888776654 3468889999887 334699999998887665
Q ss_pred hhH-------------------HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCC
Q 023384 191 DED-------------------GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERT 251 (283)
Q Consensus 191 d~~-------------------~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 251 (283)
++. ..++|+++.+.|+| ||++++++.... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~----------------------------~ 145 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN----------------------------G 145 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------C
Confidence 421 35789999999999 799888763221 2
Q ss_pred HHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 252 ESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
..++.+++++.||....+....-+.--+.++|
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 56788999999999888777665555555543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-13 Score=116.19 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEecccccCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~ 189 (283)
...+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++...|+.+ +++ .||+|++..+||++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999885 579999999 777766543 3378888889877 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
++++...+++++.++|+| ||.++++.....+....+ . .....++.+|++++++. |++++.
T Consensus 198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~--------~-------p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCP--------M-------PFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCC--------C-------CCCcccCHHHHHHHhCC--CEEEEE
Confidence 988889999999999999 798887765443321110 0 00123578999999964 888776
Q ss_pred E
Q 023384 270 T 270 (283)
Q Consensus 270 ~ 270 (283)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=114.50 Aligned_cols=98 Identities=14% Similarity=0.279 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCCC---------------------------
Q 023384 118 GLGSLVDVGGGNGS----LSRIISEAFP-----GIKCTVLDL-PHVVANLPEA--------------------------- 160 (283)
Q Consensus 118 ~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 160 (283)
...+|+|+|||+|. +++.+++.+| +.++++.|+ +.+++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 44799999999997 5666666655 578999999 8888877651
Q ss_pred ------CCeEEEEcCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 161 ------DNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 161 ------~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+|+|..+|+.+ +.+ .||+|+++++||++++++..+++++++++|+| ||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 378999999998 443 49999999999999998888999999999999 78887754
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=124.60 Aligned_cols=143 Identities=13% Similarity=0.173 Sum_probs=108.7
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC---CCC-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ---FIP- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~---~~p- 175 (283)
..+++ .++ .....+|||||||+|.++..+++.. .+++++|+ +++++.+++ ..++.++.+|+.+ ++|
T Consensus 27 ~~il~-~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILS-LLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHh-hcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 44445 444 3455799999999999999999874 47899999 777766542 4578999999964 344
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHH
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 254 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 254 (283)
.||+|++..++|++++++..++|+++++.|+| ||.+++.|.......... . .......++..+
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~-------~~~~~~~~~~~~ 165 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------R-------KNNPTHYREPRF 165 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------c-------cCCCCeecChHH
Confidence 49999999999999998889999999999999 799999887654332110 0 001233456889
Q ss_pred HHHHHHHCCCCeee
Q 023384 255 WAKLFFDACFSHYK 268 (283)
Q Consensus 255 ~~~ll~~aGf~~~~ 268 (283)
|.+++.++||....
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999987763
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-14 Score=102.46 Aligned_cols=86 Identities=19% Similarity=0.412 Sum_probs=72.5
Q ss_pred EEEEcCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEec-ccccC
Q 023384 122 LVDVGGGNGSLSRIISEAF---PGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFK-LVFHG 188 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~-~vlh~ 188 (283)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ..+++++..|+.+ ++. .||+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 888877765 3589999999988 533 59999995 55999
Q ss_pred CChhHHHHHHHHHHHhhcc
Q 023384 189 LGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p 207 (283)
+++++..++|+++.+.|+|
T Consensus 81 ~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP 99 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.9e-13 Score=108.86 Aligned_cols=141 Identities=9% Similarity=0.078 Sum_probs=97.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHh----cCCCCCCeEEEEcCCCCC-----CC-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA----NLPEADNLKYIAGDMFQF-----IP-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~rv~~~~~d~~~~-----~p-~~D~v~~~~ 184 (283)
+.+..+|||+|||+|.++..+++..+..+++++|+ +++++ .+++..++.++.+|..++ ++ .+|+++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~-- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ-- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence 56778999999999999999999988778999999 76555 333346799999998753 22 4898873
Q ss_pred cccCCChh-HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 185 VFHGLGDE-DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 185 vlh~~~d~-~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+.+++ ....+|+++++.||| ||+++|.=...+-+...+ .. +..++..++++++|
T Consensus 148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~------------------~~-~~~~~~~~~l~~aG 202 (226)
T PRK04266 148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKD------------------PK-EIFKEEIRKLEEGG 202 (226)
T ss_pred ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCC------------------HH-HHHHHHHHHHHHcC
Confidence 34433 234568999999999 899988411111000000 00 11244469999999
Q ss_pred CCeeeEEEcCCc---ceEEEEeC
Q 023384 264 FSHYKITPIFGM---RFLIEIYP 283 (283)
Q Consensus 264 f~~~~~~~~~~~---~~~i~~~~ 283 (283)
|+.++....... +..+++++
T Consensus 203 F~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 203 FEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred CeEEEEEcCCCCcCCeEEEEEEc
Confidence 999998877533 66666653
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=114.07 Aligned_cols=96 Identities=15% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCccHHHHH--HHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCC---CCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRI--ISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFI---PPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~---p~~D~v~~~ 183 (283)
+.++|+|||||.|.++.. +++.+|+.+++++|+ +++++.|++ .++++|..+|..+.. .+||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998855443 334689999999999 877776654 478999999998732 369999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
++|+|+.++-.++|+++++.|+| ||.+++-
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr 232 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR 232 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence 99999877778999999999999 5666553
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=116.97 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=107.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCCCCCCceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d 191 (283)
..+..+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ...+++...|+.+....||+|++..++++.++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 5677899999999999999998876 679999999 888877664 33578888887653235999999999999988
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
.....++++++++|+| ||.+++.+...+...... ..+.+-. ...+|...+.+++.++++ .||.+.++..
T Consensus 244 ~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~~-----~~~i~~y--ifp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 244 KNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTNV-----DPWINKY--IFPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred HHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCCC-----CCCceee--ecCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 7778899999999999 799888876544322110 1111111 123566668888888766 5898777654
Q ss_pred c
Q 023384 272 I 272 (283)
Q Consensus 272 ~ 272 (283)
.
T Consensus 313 ~ 313 (383)
T PRK11705 313 F 313 (383)
T ss_pred C
Confidence 4
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.6e-13 Score=114.65 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCCCCCceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQFIPPADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p~~D~v~~~~v 185 (283)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++|..+|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 578999999 778766654 13578888887653245999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-cccc-ccCCccCCHHHHHHHHHHCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSV-NATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~t~~e~~~ll~~aG 263 (283)
+||++++....+++.+.+ +.+ |+++|.. .+...... . ......+ .... .......+.++++++++++|
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~~~-~--l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AG 291 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLYYD-I--LKRIGELFPGPSKATRAYLHAEADVERALKKAG 291 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchHHH-H--HHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCC
Confidence 999999877778888775 454 5555532 22211100 0 0000000 0000 00112347999999999999
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|++.+..-... +..++||+
T Consensus 292 f~v~~~~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 292 WKVARREMTATQFYFSRLLEAV 313 (315)
T ss_pred CEEEEEEEeecceeHHhhhhhc
Confidence 99876544332 23455554
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.4e-14 Score=112.51 Aligned_cols=145 Identities=15% Similarity=0.097 Sum_probs=102.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CC--CCceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FI--PPADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~--p~~D~v~~~~vlh~ 188 (283)
...+|||||||.|.++..+++. +.+++++|+ ++.++.|+. .-.+++.+...++ .. ..||+|++..+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4589999999999999999998 489999999 777887774 2334466666665 33 36999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc----cCCccCCHHHHHHHHHHCCC
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN----ATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~t~~e~~~ll~~aGf 264 (283)
.+|++ .+++.+.+.+|| ||.+++...........- .....- .+..+.- .-.+...++|...++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka~~~--~i~~ae-~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTINRTLKAYLL--AIIGAE-YVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHHHHH--HHHHHH-HHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99988 589999999999 687777665532211110 000000 0001111 12455688999999999999
Q ss_pred CeeeEEEc
Q 023384 265 SHYKITPI 272 (283)
Q Consensus 265 ~~~~~~~~ 272 (283)
.+.+....
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88876543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-13 Score=112.69 Aligned_cols=140 Identities=22% Similarity=0.247 Sum_probs=104.3
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CC----CeEEEEcCCCCCCCCceEEEecccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------AD----NLKYIAGDMFQFIPPADAFLFKLVF 186 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----rv~~~~~d~~~~~p~~D~v~~~~vl 186 (283)
.+|||||||+|.++..|++. +..++++|. +.+++.|++ .. |+++...|.....+.||+|+++.++
T Consensus 91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 67999999999999999998 578999999 778877764 22 5777888877755569999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-----cCCccCCHHHHHHHHHH
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-----ATGKERTESEWAKLFFD 261 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~~~ll~~ 261 (283)
+|..|.+ .+++.+.+.|+| +|+++|......-.... ......+...... ...+..++++..++++.
T Consensus 169 eHV~dp~--~~l~~l~~~lkP---~G~lfittinrt~lS~~----~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~ 239 (282)
T KOG1270|consen 169 EHVKDPQ--EFLNCLSALLKP---NGRLFITTINRTILSFA----GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNA 239 (282)
T ss_pred HHHhCHH--HHHHHHHHHhCC---CCceEeeehhhhHHHhh----ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHh
Confidence 9998875 889999999999 79999887543321111 0111111111111 23456689999999999
Q ss_pred CCCCeeeEE
Q 023384 262 ACFSHYKIT 270 (283)
Q Consensus 262 aGf~~~~~~ 270 (283)
+++.+..+.
T Consensus 240 ~~~~v~~v~ 248 (282)
T KOG1270|consen 240 NGAQVNDVV 248 (282)
T ss_pred cCcchhhhh
Confidence 999877664
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.5e-12 Score=100.02 Aligned_cols=119 Identities=19% Similarity=0.159 Sum_probs=92.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP-PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~v~~~~vl 186 (283)
++...+|||||||+|..+..++++.|+.+++++|. +++++.+++ .++++++.+|+.+ +.. .||+|++..+
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 34468999999999999999999999999999999 777766654 3459999999987 333 5999998652
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
. ....+++.+++.|+| ||++++++... ...++.++.++.|+.+
T Consensus 122 ---~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 ---A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKV 164 (187)
T ss_pred ---c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceE
Confidence 2 235789999999999 78888774210 2455677778889998
Q ss_pred eeEEEc
Q 023384 267 YKITPI 272 (283)
Q Consensus 267 ~~~~~~ 272 (283)
.+++..
T Consensus 165 ~~~~~~ 170 (187)
T PRK00107 165 EEVIEL 170 (187)
T ss_pred eeeEEE
Confidence 876544
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-12 Score=102.47 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEEcCCCC-C---
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------------------EADNLKYIAGDMFQ-F--- 173 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~-~--- 173 (283)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. +..+|++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45579999999999999999986 789999999 66666531 13578999999998 4
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCcc-chhhhhhhhhcccccccccCCccCCH
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
.+.||+|+-+.++|+++.+...+.++++.++|+| ||.++++....+.... .+ -...+.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gp------------------p~~~~~ 169 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGP------------------PFSVSP 169 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCc------------------CCCCCH
Confidence 2359999999999999999989999999999999 7887777665432211 11 123588
Q ss_pred HHHHHHHHHCCCCeeeEE
Q 023384 253 SEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~ 270 (283)
+|+.+++.. +|.+..+.
T Consensus 170 ~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 170 AEVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHHhcC-CceEEEEe
Confidence 999998864 46555443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-12 Score=112.09 Aligned_cols=97 Identities=25% Similarity=0.427 Sum_probs=80.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCCCC-C-CceEEEecccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQFI-P-PADAFLFKLVF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~~-p-~~D~v~~~~vl 186 (283)
..+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..++++...|.++.. + .||+|+++-.+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 46999999999999999999999999999999 667766653 137899999998854 3 59999997655
Q ss_pred cC---CChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HG---LGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~---~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|. ++++.+.++++.++++|+| ||.++++-
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 53 5666678999999999999 79888874
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=103.22 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=88.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CC-CCceEEEecccccCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FI-PPADAFLFKLVFHGL 189 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~-p~~D~v~~~~vlh~~ 189 (283)
..+|||||||+|..+..++...|+.+++++|. +++++.+++ .++++++.+|+.+ +. +.||+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 58999999999999999999999999999999 666654432 3579999999987 33 3599998866 5432
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHH---CCCCe
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD---ACFSH 266 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~---aGf~~ 266 (283)
..+++.+++.|+| ||.+++... . ....++..+.+. .||+.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~~---~--------------------------~~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYKG---K--------------------------KYLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEcC---C--------------------------CcHHHHHHHHHhhhhcCceE
Confidence 3568888999999 788776531 0 023445555544 79998
Q ss_pred eeEEEcCCc
Q 023384 267 YKITPIFGM 275 (283)
Q Consensus 267 ~~~~~~~~~ 275 (283)
++..+..++
T Consensus 165 ~~~~~~~~~ 173 (181)
T TIGR00138 165 LEVPPLTGP 173 (181)
T ss_pred eeccccCCC
Confidence 888776543
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=104.80 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=110.6
Q ss_pred eEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCC-----CC--CceEEEeccc
Q 023384 121 SLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQF-----IP--PADAFLFKLV 185 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~-----~p--~~D~v~~~~v 185 (283)
+||+||||.|...--+++..|+ +++..+|. |..++..++ ..++.-...|+..+ .+ ..|++++..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999988 99999999 888877665 34555555565542 22 3899999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCC---ccCCHHHHHHHHHHC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG---KERTESEWAKLFFDA 262 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~e~~~ll~~a 262 (283)
|-..+++...+.++++++.||| ||.|++-|....+-.... +. ....++.+..+...| ..++.+++.+++++|
T Consensus 154 LSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~DlaqlR-F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQLR-FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHHh-cc-CCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 9999999999999999999999 899999998776543321 11 122344444444333 346999999999999
Q ss_pred CCCeeeE
Q 023384 263 CFSHYKI 269 (283)
Q Consensus 263 Gf~~~~~ 269 (283)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9987764
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=105.19 Aligned_cols=147 Identities=15% Similarity=0.104 Sum_probs=98.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-C--C-CCceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-F--I-PPADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~-p~~D~v~~~~vl 186 (283)
....+|||||||+|.++..+++. ..+++++|+ +..++.+++ ..++++...|+.+ + . ..||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 34678999999999999988875 568999999 666665543 3457788887765 2 2 249999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch-hhhhhhhhccccccc-ccCCccCCHHHHHHHHHHCCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH-ELTETKFLFDIVMSV-NATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf 264 (283)
++.++.. .+|+++.+.|+| ||.+++..... ...... ............-.. .......+.++|.++++++||
T Consensus 125 ~~~~~~~--~~l~~~~~~L~~---gG~l~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 125 EHVPDPA--SFVRACAKLVKP---GGLVFFSTLNR-NLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hccCCHH--HHHHHHHHHcCC---CcEEEEEecCC-ChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 9988764 789999999999 78887765321 110000 000000000000000 011345588999999999999
Q ss_pred CeeeEEE
Q 023384 265 SHYKITP 271 (283)
Q Consensus 265 ~~~~~~~ 271 (283)
++++...
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9987753
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=107.75 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=80.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC-CceEEEecccccCC--
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP-PADAFLFKLVFHGL-- 189 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~-- 189 (283)
..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .-..+++.+|.+++.+ .||+|+++-.+|+.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 46899999999999999999999999999999 777776654 2345678889887544 49999999999863
Q ss_pred -ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 190 -GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 190 -~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..+...++++++.+.|+| ||.++|+-.
T Consensus 277 ~~~~~~~~~i~~a~~~Lkp---gG~L~iVan 304 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (342)
T ss_pred ccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence 345568999999999999 799888653
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-12 Score=101.75 Aligned_cols=147 Identities=11% Similarity=0.111 Sum_probs=93.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC---CCC--CceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ---FIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh~~ 189 (283)
.+...+|||||||+|.++..+++. ...+++++|+ ++.++.+++ .+++++.+|+.+ +++ .||+|++..++|++
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 445679999999999999888765 4667899999 777776653 467888888865 233 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhh-----cccccccccCCccCCHHHHHHHHHHCCC
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFL-----FDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
.+.. .+|+++.+.+++ + ++.-+................. ...........+..+.+++.++++++||
T Consensus 89 ~d~~--~~l~e~~r~~~~----~--ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 89 RNPE--EILDEMLRVGRH----A--IVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred cCHH--HHHHHHHHhCCe----E--EEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 8754 678888776554 2 2221110000000000000000 0000000112346789999999999999
Q ss_pred CeeeEEEc
Q 023384 265 SHYKITPI 272 (283)
Q Consensus 265 ~~~~~~~~ 272 (283)
++++....
T Consensus 161 ~v~~~~~~ 168 (194)
T TIGR02081 161 RILDRAAF 168 (194)
T ss_pred EEEEEEEe
Confidence 99887655
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-12 Score=102.35 Aligned_cols=140 Identities=17% Similarity=0.248 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCe-EEEEcCCCC--CCC-CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNL-KYIAGDMFQ--FIP-PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv-~~~~~d~~~--~~p-~~D~v~~~~vlh 187 (283)
...+.||.|+|.|..+..++..+ --++-++|. +.-++.|++ ..++ ++.+.-+.+ |.+ .||+||+.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 45799999999999999887654 235677787 777777663 2343 455554444 443 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
|++|++.++.|++++++|+| +|.|+|=|.+....... +|- ..++--|+.+.|++++++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~~---------~D~----~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFDE---------FDE----EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEEE---------EET----TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCcc---------cCC----ccCeeecCHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 78888888877654311 110 123456789999999999999999
Q ss_pred eEEEcCC
Q 023384 268 KITPIFG 274 (283)
Q Consensus 268 ~~~~~~~ 274 (283)
+...-.+
T Consensus 198 ~~~~Q~~ 204 (218)
T PF05891_consen 198 KEEKQKG 204 (218)
T ss_dssp EEEE-TT
T ss_pred EeccccC
Confidence 8654443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=104.03 Aligned_cols=143 Identities=13% Similarity=0.089 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhc---CCC----CCCeEEEEcCCCC-C-CCCceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVAN---LPE----ADNLKYIAGDMFQ-F-IPPADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~----~~rv~~~~~d~~~-~-~p~~D~v~~~~vlh 187 (283)
.+++|||||||+|.++..++.+.|. .++++|. +-...+ +++ ..++.+...-+.. + ...||+|++..||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 3489999999999999999999654 5899996 322211 111 2334444333333 3 23499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC-CccCCHHHHHHHHHHCCCCe
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT-GKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~ 266 (283)
|..++- ..|+.+++.|+| ||.+++-..+++.+.... +....++.. | .+ --..|...++.|++++||+.
T Consensus 194 Hrr~Pl--~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~-L~P~~rYa~--m---~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 194 HRRSPL--DHLKQLKDSLRP---GGELVLETLVIDGDENTV-LVPEDRYAK--M---RNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred ccCCHH--HHHHHHHHhhCC---CCEEEEEEeeecCCCceE-EccCCcccC--C---CceEEeCCHHHHHHHHHHcCCce
Confidence 998875 779999999999 677666555555443221 000001100 0 00 11238999999999999999
Q ss_pred eeEEEc
Q 023384 267 YKITPI 272 (283)
Q Consensus 267 ~~~~~~ 272 (283)
+++...
T Consensus 263 v~~v~~ 268 (315)
T PF08003_consen 263 VRCVDV 268 (315)
T ss_pred EEEecC
Confidence 998764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.2e-12 Score=99.64 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=93.7
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-Cc
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PA 177 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~ 177 (283)
.+.+ ..+ .-...++||+|||.|..+..|+++ +..++.+|. +..++.+++ .-.|+....|+.+ .++ .|
T Consensus 21 ~v~~-a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 21 EVLE-AVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHH-HCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHH-HHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 3445 444 445689999999999999999998 889999999 655655442 4458899999988 665 49
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
|+|++..+++++..+...++++++.++++| ||.++++..+. ....+. .... ...+...|+.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~-~~d~p~-------~~~~-------~f~~~~~EL~~ 157 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFME-TPDYPC-------PSPF-------PFLLKPGELRE 157 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB---SSS---------SS---------S--B-TTHHHH
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecc-cCCCCC-------CCCC-------CcccCHHHHHH
Confidence 999999999999999999999999999999 67766655433 221110 0000 12235677888
Q ss_pred HHHHCCCCeeeE
Q 023384 258 LFFDACFSHYKI 269 (283)
Q Consensus 258 ll~~aGf~~~~~ 269 (283)
.+. ||++++.
T Consensus 158 ~y~--dW~il~y 167 (192)
T PF03848_consen 158 YYA--DWEILKY 167 (192)
T ss_dssp HTT--TSEEEEE
T ss_pred HhC--CCeEEEE
Confidence 875 6877653
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=102.31 Aligned_cols=145 Identities=14% Similarity=0.050 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEEcCCCC-CC---CCceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----AD-NLKYIAGDMFQ-FI---PPADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-rv~~~~~d~~~-~~---p~~D~v~~~~vl 186 (283)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. ++++...|+.+ +. ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 35799999999999999888864 46999999 666665543 22 58888888776 32 249999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc---cCCccCCHHHHHHHHHHCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN---ATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~~aG 263 (283)
|+..+.. .+|+++++.|+| ||.+++.....+..... .........+..... ......+.+++.++++++|
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTINRTPKSYL--LAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEEecCCCchHHH--HHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 9988765 789999999999 78887765422110000 000000000000000 1123457899999999999
Q ss_pred CCeeeEEE
Q 023384 264 FSHYKITP 271 (283)
Q Consensus 264 f~~~~~~~ 271 (283)
|+++++..
T Consensus 196 ~~i~~~~~ 203 (224)
T TIGR01983 196 LRVKDVKG 203 (224)
T ss_pred Ceeeeeee
Confidence 99988754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.6e-12 Score=98.51 Aligned_cols=133 Identities=19% Similarity=0.243 Sum_probs=97.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCCCCC--CceEEEecccccC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQFIP--PADAFLFKLVFHG 188 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~ 188 (283)
-....+++|+|||.|.++..|+.+. -+++++|+ +..++.+++ ..+|+++..|+-+..| .||+|+++-++|.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 4455799999999999999999985 47899999 888887765 5789999999988544 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 189 LGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 189 ~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
+++ ++...+++++.++|+| ||.+++.... +.. . ...|.....+.+.++|++. |..+
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~r-d~~-----------c-------~~wgh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHAR-DAN-----------C-------RRWGHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE--HHH-----------H-------HHTT-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEec-CCc-----------c-------cccCcccchHHHHHHHHHH-hhhe
Confidence 986 6788899999999999 7887776642 110 0 1135556788899999987 7777
Q ss_pred eEEEcC
Q 023384 268 KITPIF 273 (283)
Q Consensus 268 ~~~~~~ 273 (283)
+.+.+.
T Consensus 176 ~~~~~~ 181 (201)
T PF05401_consen 176 ERVECR 181 (201)
T ss_dssp EEEEEE
T ss_pred eEEEEc
Confidence 766653
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-11 Score=98.76 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEEcCCCCC----
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------------------EADNLKYIAGDMFQF---- 173 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~~---- 173 (283)
....+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45579999999999999999986 789999999 66666431 136789999999983
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCcc-chhhhhhhhhcccccccccCCccCCH
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
.+.||+|+-+.++|+++.+...+.++++.++|+| ||.++++....++... .| -...+.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gP------------------p~~~~~ 172 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGP------------------PFSVSD 172 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCC------------------CCCCCH
Confidence 2358999999999999999999999999999999 7876665554432221 11 123589
Q ss_pred HHHHHHHHHCCCCeeeEEE
Q 023384 253 SEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~ 271 (283)
+|+++++.. +|.+..+..
T Consensus 173 ~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 173 EEVEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHHHhcC-CceEEEeee
Confidence 999999963 366665543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-11 Score=99.25 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=86.4
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC-C
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-P 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~ 176 (283)
+-+++ .++ .....+|+|+|||.|.+++.+++.+|+.+++.+|. ...++.+++ .++..+...|.+++.. .
T Consensus 148 ~lLl~-~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 148 RLLLE-TLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHH-hCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 34455 555 34445999999999999999999999999999999 667777765 2333678889988655 5
Q ss_pred ceEEEecccccCC---ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 177 ADAFLFKLVFHGL---GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 177 ~D~v~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
||+|+++=-+|.= .+.-+.++++...+.|++ ||.+.|+-.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 9999999999842 233455899999999999 899988764
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=97.47 Aligned_cols=98 Identities=22% Similarity=0.431 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~ 188 (283)
...+|||+|||+|.++..+++.+|+.+++.+|+ +.+++.+++ .+.++++..|.+++.+ .||+|++.=.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 558999999999999999999999999999999 777777654 2339999999999655 4999999888876
Q ss_pred CCh---hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 189 LGD---EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 189 ~~d---~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
-.+ +-..++++.+.+.|+| ||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 554 3467899999999999 78886644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=98.46 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=96.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hH----HHhcCCCCCCeEEEEcCCCCC------CCCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PH----VVANLPEADNLKYIAGDMFQF------IPPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~rv~~~~~d~~~~------~p~~D~v~~~ 183 (283)
+....+|||+|||+|.++..+++.. |.-+++.+|+ +. +++.+++..+|.++.+|...+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5677899999999999999999986 4568999998 54 445554457899999998653 2348999886
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
... +| +...++.++++.||| ||.++|...........+ ..++-.+|. ++|+++|
T Consensus 210 va~---pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~------------------pe~~f~~ev-~~L~~~G 263 (293)
T PTZ00146 210 VAQ---PD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAK------------------PEVVFASEV-QKLKKEG 263 (293)
T ss_pred CCC---cc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCC------------------HHHHHHHHH-HHHHHcC
Confidence 631 23 344566789999999 788888321111111000 011112444 8899999
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|+.++.+.+.. .+++++++
T Consensus 264 F~~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 264 LKPKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred CceEEEEecCCccCCcEEEEEE
Confidence 99999887743 46666653
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=101.85 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEeccccc-
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLVFH- 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~vlh- 187 (283)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++.++.+|++++++ .||+|++.-..+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346899999999999999999999999999999 777776654 3479999999988553 499999853332
Q ss_pred -----CCChh------------------HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 188 -----GLGDE------------------DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 188 -----~~~d~------------------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
.+..+ ....+++++.+.|+| ||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC-------------------------
Confidence 22211 124789999999999 687665210
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
....+++.++++++||+.++++..
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 013567899999999998887664
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.6e-11 Score=98.77 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=90.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~D~v~~~~vlh 187 (283)
.....+|||||||+|.+++.+++..+ .+++++|+ +.+++.+++ .+++.+..+|. .||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~-- 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL-- 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc--
Confidence 35678999999999999988776544 46999999 778777664 13343333321 5899987532
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
.+....+++++.+.|+| ||.+++...... ..+++.+.+++.||++.
T Consensus 189 ---~~~~~~l~~~~~~~Lkp---gG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 189 ---ANPLLELAPDLARLLKP---GGRLILSGILEE----------------------------QADEVLEAYEEAGFTLD 234 (250)
T ss_pred ---HHHHHHHHHHHHHhcCC---CcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEE
Confidence 23356789999999999 788887643210 35678899999999999
Q ss_pred eEEEcCCcceEEEEe
Q 023384 268 KITPIFGMRFLIEIY 282 (283)
Q Consensus 268 ~~~~~~~~~~~i~~~ 282 (283)
++.....+.+++..+
T Consensus 235 ~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 235 EVLERGEWVALVGKK 249 (250)
T ss_pred EEEEeCCEEEEEEEe
Confidence 988888888776543
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=94.65 Aligned_cols=149 Identities=20% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeE-EEEcCCCC-C-CC--CceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLK-YIAGDMFQ-F-IP--PADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~-~~~~d~~~-~-~p--~~D~v~~~~ 184 (283)
++...||+||||||..-.. ..--|..++|.+|. +.+.+.+.+ ...+. |+.++..+ + ++ ++|+|+...
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 4456789999999987642 22226789999999 555443332 45566 88888877 5 44 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
+|- +-++.++.|+++++.|+| ||+++++|.+..+.+.-..+ .. ...+-.--....|-..|.+-| +.|++|-|
T Consensus 154 vLC--Sve~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~i-~q-~v~ep~~~~~~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLC--SVEDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNRI-LQ-QVAEPLWHLESDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEe--ccCCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHHH-HH-HHhchhhheeccceEEehhHH-HHhhhccc
Confidence 887 445567999999999999 89999999988776543211 11 111111111234555676655 67788889
Q ss_pred CeeeEEEcCC
Q 023384 265 SHYKITPIFG 274 (283)
Q Consensus 265 ~~~~~~~~~~ 274 (283)
+..+..+.+.
T Consensus 226 ~~~~~kr~~~ 235 (252)
T KOG4300|consen 226 SIDSCKRFNF 235 (252)
T ss_pred ccchhhcccC
Confidence 9988777654
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=90.28 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=74.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C-C-CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F-I-PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~-p~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++++|..+++++|. +..++.+++ ..+++++.+|... + . +.||+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 45567999999999999999999999999999999 777766543 3578899888764 1 2 3599999976
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..+ ...++++++++.|+| ||.+++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 543 335889999999999 6877653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=99.19 Aligned_cols=135 Identities=16% Similarity=0.270 Sum_probs=98.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEeccccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLVFH 187 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~vlh 187 (283)
....+|||+|||+|..+..+++.+|+.+++++|+ +..++.+++ ..++.++.+|++++.+ .||+|++.-...
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567999999999999999999999999999999 777766553 3589999999988654 599998842211
Q ss_pred ------CCCh------------------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc
Q 023384 188 ------GLGD------------------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV 243 (283)
Q Consensus 188 ------~~~d------------------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
...+ +...++++++.+.|+| ||.+++ +. +
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g------------------ 239 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----G------------------ 239 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----C------------------
Confidence 1111 1235788999999999 677666 21 0
Q ss_pred ccCCccCCHHHHHHHHHHCCCCeeeEEE-cCCcceEEEEeC
Q 023384 244 NATGKERTESEWAKLFFDACFSHYKITP-IFGMRFLIEIYP 283 (283)
Q Consensus 244 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 283 (283)
....+++.+++++.||+.++++. ..+...++.+++
T Consensus 240 -----~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 240 -----YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred -----chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 01245688999999999777643 345556665553
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=99.10 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCC-CC-C--CC--CceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDM-FQ-F--IP--PADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~-~~-~--~p--~~D~v~~~~ 184 (283)
...+|||||||+|..+..+++.+|+.+++++|+ +++++.+++ ..+++++.+|+ .. + ++ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 457999999999999999999999999999999 777776653 36799999999 43 3 43 499999865
Q ss_pred cccCCC------hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLG------DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~------d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..+... ......+|++++++|+| ||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 442111 11235789999999999 78888754
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.5e-10 Score=89.11 Aligned_cols=124 Identities=18% Similarity=0.257 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCC-eEEEEcCCCCCCC--CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADN-LKYIAGDMFQFIP--PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~r-v~~~~~d~~~~~p--~~D~v~~~~v 185 (283)
.+..+|||+|||+|.++..+++. ..+++++|+ +++++.+++ ..+ +.++.+|+.++++ .+|+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45578999999999999999988 688999999 777776643 222 8899999988544 4999998765
Q ss_pred ccCCC-------------------hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC
Q 023384 186 FHGLG-------------------DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT 246 (283)
Q Consensus 186 lh~~~-------------------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
+.... ......+++++.++|+| ||.++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence 43211 12245689999999999 68777653110
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
...+++.++++++||++..+....
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeecc
Confidence 124678899999999988775543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-10 Score=99.25 Aligned_cols=134 Identities=15% Similarity=0.209 Sum_probs=96.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC---CceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP---PADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p---~~D~v~~~~vl 186 (283)
+...+|||+|||+|.++..+++.+|+.+++++|+ +++++.+++ ..+++++.+|+++ ..+ .||+|+++-.-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 4456999999999999999999999999999999 888877764 4589999999987 332 49999984422
Q ss_pred cCCC---------------------h--hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc
Q 023384 187 HGLG---------------------D--EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV 243 (283)
Q Consensus 187 h~~~---------------------d--~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
..-. | +-..++++.+.+.|+| ||.+ ++|.-.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~l-ilEiG~---------------------- 383 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFL-LLEHGF---------------------- 383 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEE-EEEECc----------------------
Confidence 1100 0 1134677777888998 5664 344311
Q ss_pred ccCCccCCHHHHHHHHHHCCCCeeeEEEc-CCcceEEEEe
Q 023384 244 NATGKERTESEWAKLFFDACFSHYKITPI-FGMRFLIEIY 282 (283)
Q Consensus 244 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~ 282 (283)
...+++++++++.||+.+++.+- .+...++.++
T Consensus 384 ------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 384 ------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred ------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 12567889999999998876554 5556666554
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-11 Score=92.79 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=88.6
Q ss_pred EEeec-hHHHhcCCC---------CCCeEEEEcCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCc
Q 023384 146 TVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERG 212 (283)
Q Consensus 146 ~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg 212 (283)
+++|+ +++++.|++ ..+++++.+|..+ |++ .||+|++..++|+++|.. +.|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCc---Ce
Confidence 36888 788876632 2479999999988 765 399999999999998764 889999999999 89
Q ss_pred EEEEEeeecCCCccchhhhhhhhhcccccc-----ccc-C---------CccCCHHHHHHHHHHCCCCeeeEEEcC-Ccc
Q 023384 213 KVIIIDIVINAEEEEHELTETKFLFDIVMS-----VNA-T---------GKERTESEWAKLFFDACFSHYKITPIF-GMR 276 (283)
Q Consensus 213 ~lli~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~---------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~ 276 (283)
.++|.|...++....... .......... ... . ....+.+|+.++|+++||+.++..... +..
T Consensus 76 ~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~ 153 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFM 153 (160)
T ss_pred EEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHh
Confidence 999999876553221100 0000000000 000 0 123488999999999999999877764 345
Q ss_pred eEEEE
Q 023384 277 FLIEI 281 (283)
Q Consensus 277 ~~i~~ 281 (283)
++..+
T Consensus 154 ~~~~~ 158 (160)
T PLN02232 154 GNLVA 158 (160)
T ss_pred HeeEe
Confidence 55554
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=93.69 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=111.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC------CCCceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF------IPPADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~------~p~~D~v 180 (283)
....+||||.||+|.+....+..+|. .++.+.|. +..++..++ .+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35579999999999999999999998 78899998 666665543 44559999999983 2458999
Q ss_pred EecccccCCChhHHHH-HHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC-----CccCCHHH
Q 023384 181 LFKLVFHGLGDEDGLK-ILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT-----GKERTESE 254 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~-iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e 254 (283)
+.+.++..|+|++.++ .|+.+++++.| ||.++....-. .|.. + +........-+ -+.||+.|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPw-----HPQl-e---~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPW-----HPQL-E---MIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCC-----Ccch-H---HHHHHHhcccCCCceEEEecCHHH
Confidence 9999999999987555 69999999999 56655433111 1100 0 00001111111 24689999
Q ss_pred HHHHHHHCCCCeeeE-EEcCCcceEEEEeC
Q 023384 255 WAKLFFDACFSHYKI-TPIFGMRFLIEIYP 283 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~-~~~~~~~~~i~~~~ 283 (283)
..+|+++|||+.++. +...|.++|-.|+|
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 999999999997764 34456788877765
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-10 Score=87.30 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=79.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC---CCCceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF---IPPADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~p~~D~v~~~~v 185 (283)
..+..+++|||||||..+++++...|+.+++.+|. ++.++..++ .+++.++.||.-+. .+.+|.+++...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 67788999999999999999999999999999998 777665543 78999999998773 446999999775
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
- ....+|+.+...|+| ||++++.-.
T Consensus 112 ~------~i~~ile~~~~~l~~---ggrlV~nai 136 (187)
T COG2242 112 G------NIEEILEAAWERLKP---GGRLVANAI 136 (187)
T ss_pred C------CHHHHHHHHHHHcCc---CCeEEEEee
Confidence 2 245889999999999 788776543
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.1e-10 Score=90.69 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------------CCCCeEEEEcCCCC-CC--
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------------------EADNLKYIAGDMFQ-FI-- 174 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~rv~~~~~d~~~-~~-- 174 (283)
....+||+.|||.|.-+..|++. +.+++++|+ +..++.+. ...++++.++|+|+ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999997 778999999 66666531 15689999999999 42
Q ss_pred ---CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 175 ---PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 175 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
..||+|+-+.+|+.++++...+..+.+.+.|+| ||.++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence 259999999999999999999999999999999 788888875443
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=94.10 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=93.8
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEec------
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFK------ 183 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~------ 183 (283)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ ..+++++.+|++++++ .||+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 777776664 3569999999998654 49999885
Q ss_pred -------ccccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC
Q 023384 184 -------LVFHGLGD----------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT 246 (283)
Q Consensus 184 -------~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
.++++-+. +...++++++.+.|+| ||. +++|....
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~-l~~e~g~~------------------------ 247 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGF-LVCEIGNW------------------------ 247 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCE-EEEEECcc------------------------
Confidence 23332221 2456789999999999 565 45553211
Q ss_pred CccCCHHHHHHHHH-HCCCCeeeEEEc-CCcceEEEEe
Q 023384 247 GKERTESEWAKLFF-DACFSHYKITPI-FGMRFLIEIY 282 (283)
Q Consensus 247 ~~~~t~~e~~~ll~-~aGf~~~~~~~~-~~~~~~i~~~ 282 (283)
..+.+.+++. +.||..+++++- .+...++.++
T Consensus 248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 1345667777 468887766543 4545555443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=92.12 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=95.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC---CC--CceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF---IP--PADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~---~p--~~D~v~~~~vlh~~ 189 (283)
.++.++|||+|||.|.++..|.+. .++++.++|+ ++.+..+- ...+.++++|+.+. +| .||.|+++++|.+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 456799999999999999887775 7999999999 55444333 35678999999883 55 39999999999988
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhh---hhhhhccccccc-c-cCCccCCHHHHHHHHHHCCC
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT---ETKFLFDIVMSV-N-ATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~---~~~~~~~~~~~~-~-~~~~~~t~~e~~~ll~~aGf 264 (283)
..++ ++|+++.++- .+.+|.=+.+..-..-.... .....-.+..-+ . .+-+..|..+++++.++.|+
T Consensus 89 ~~P~--~vL~EmlRVg------r~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i 160 (193)
T PF07021_consen 89 RRPD--EVLEEMLRVG------RRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGI 160 (193)
T ss_pred hHHH--HHHHHHHHhc------CeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCC
Confidence 8776 6688876653 33333222111000000000 000000011101 1 13345589999999999999
Q ss_pred CeeeEEEcCC
Q 023384 265 SHYKITPIFG 274 (283)
Q Consensus 265 ~~~~~~~~~~ 274 (283)
++.+.....+
T Consensus 161 ~I~~~~~~~~ 170 (193)
T PF07021_consen 161 RIEERVFLDG 170 (193)
T ss_pred EEEEEEEEcC
Confidence 9998776643
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-10 Score=96.01 Aligned_cols=119 Identities=18% Similarity=0.336 Sum_probs=88.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEecc---
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFKL--- 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~~--- 184 (283)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++++ .||+|++.=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 347899999999999999999999999999999 788777664 3579999999988554 499999851
Q ss_pred ----------cccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 185 ----------VFHGLGD----------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 185 ----------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
.+++.+. +...++++.+.+.|+| ||+++ +|...
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~-~e~g~----------------------- 253 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLV-VEVGN----------------------- 253 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEE-EEECc-----------------------
Confidence 1121111 1236789999999999 67654 44211
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
+.+++++++.++||.....
T Consensus 254 ------~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 254 ------SMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred ------CHHHHHHHHHhCCCceeee
Confidence 2356778888888876544
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=92.38 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=71.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC---CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP---PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p---~~D~v~~~ 183 (283)
.....+|||||||+|..+..+++..+ ..+++++|+ ++.++.+++ ..+++++.+|..+..+ .||+|++.
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 149 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVT 149 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEc
Confidence 45668999999999999999998874 568999999 777766653 2468999999987332 59999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..+++++ +++.+.|+| ||++++.
T Consensus 150 ~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 150 AAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred cCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 8887554 356788999 7887663
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-10 Score=93.27 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=90.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC-CceEEEecccccCCChhHH
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d~~~ 194 (283)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ ..+++++.+|+++ ..+ .||+|++.-.+++.+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 47999999999999999999888889999999 888887765 4578999999998 333 5999999888887654322
Q ss_pred ------------------HHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 195 ------------------LKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 195 ------------------~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
.+.++.+...|+| +|.+.++ ... .+ + + ....+.+||+
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~---yss---~~-~------y---------~~sl~~~~y~ 199 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA---YSG---RP-Y------Y---------DGTMKSNKYL 199 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE---Eec---cc-c------c---------cccCCHHHHH
Confidence 3456666777787 5655444 111 00 0 0 1123689999
Q ss_pred HHHHHCCCCe
Q 023384 257 KLFFDACFSH 266 (283)
Q Consensus 257 ~ll~~aGf~~ 266 (283)
++|+++||..
T Consensus 200 ~~l~~~g~~~ 209 (279)
T PHA03411 200 KWSKQTGLVT 209 (279)
T ss_pred HHHHhcCcEe
Confidence 9999999853
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-10 Score=95.71 Aligned_cols=94 Identities=19% Similarity=0.362 Sum_probs=73.8
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEecc-----
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFKL----- 184 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~~----- 184 (283)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++.++ .||+|++.-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888877664 3579999999988554 499999851
Q ss_pred --------cccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 185 --------VFHGLGD----------EDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 185 --------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.+++.+. +....+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1122111 2246889999999999 676654
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.6e-10 Score=89.43 Aligned_cols=93 Identities=22% Similarity=0.291 Sum_probs=73.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C-CCceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I-PPADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~-p~~D~v~~ 182 (283)
.....+|||+|||+|.++..+++.. +..+++++|+ ++.++.+++ .+++.++.+|+.+ + . +.||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5667899999999999999998864 6689999999 878776543 3678999999876 2 2 35999998
Q ss_pred cccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 183 KLVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.. ...+...+++.+.+.|+| ||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence 53 223346789999999999 788765
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=93.62 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=74.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C---CC--CceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F---IP--PADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~---~p--~~D~v~~~~ 184 (283)
...+|||||||+|.++..+++++|+..++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 447999999999999999999999999999999 777766543 3589999999975 2 33 388888765
Q ss_pred cccCCChhH-------HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDED-------GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..+ |+... ...+++.++++|+| ||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 433 22211 14689999999999 78887754
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.9e-10 Score=91.57 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=75.9
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC-CC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF-IP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-~p 175 (283)
..+++ .++ .....+|||||||+|..+..+++.. ++.+++++|+ +++++.+++ ..+++++.+|.... .+
T Consensus 66 ~~~~~-~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 66 AIMCE-LLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE 142 (212)
T ss_pred HHHHH-HcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence 34445 454 6677899999999999999888875 4579999999 888776664 35799999999873 22
Q ss_pred --CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 176 --PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 176 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.||+|++...+++. .+.+.+.|+| ||++++.
T Consensus 143 ~~~fD~I~~~~~~~~~--------~~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 143 NAPYDRIYVTAAGPDI--------PKPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCCcCEEEECCCcccc--------hHHHHHhhCC---CcEEEEE
Confidence 49999998776543 3456678999 7888774
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-10 Score=97.55 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCC---eEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--CceEEEecccccCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGI---KCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~ 189 (283)
...+|||||||+|.++..+++.+|.. +++++|+ +.+++.+++ ..++.+..+|..+ |++ .||+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 44789999999999999999988753 6899999 888887765 5678999999888 765 4999987543
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
. ..+++++++|+| ||.++++.+
T Consensus 161 -~----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 -P----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred -C----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236789999999 799888753
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=92.51 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=88.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~vl 186 (283)
.....+|||||||||.++++.++.. ..+++++|+ |..++.+++ .+++.+. ...+ ....||+|+.+-
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI-- 233 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANI-- 233 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES--
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECC--
Confidence 4556899999999999999877763 347999999 777777664 4566553 1111 123599998743
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
-.+-...++..+.+.|+| ||.+++.-. +.+ ..+++.+.+++ ||++
T Consensus 234 ---~~~vL~~l~~~~~~~l~~---~G~lIlSGI-l~~---------------------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 234 ---LADVLLELAPDIASLLKP---GGYLILSGI-LEE---------------------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp ----HHHHHHHHHHCHHHEEE---EEEEEEEEE-EGG---------------------------GHHHHHHHHHT-TEEE
T ss_pred ---CHHHHHHHHHHHHHhhCC---CCEEEEccc-cHH---------------------------HHHHHHHHHHC-CCEE
Confidence 234567888889999999 566655432 221 24677788877 9999
Q ss_pred eeEEEcCCcceEEEEeC
Q 023384 267 YKITPIFGMRFLIEIYP 283 (283)
Q Consensus 267 ~~~~~~~~~~~~i~~~~ 283 (283)
.+......+.+++--+|
T Consensus 279 ~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 279 VEEREEGEWVALVFKKK 295 (295)
T ss_dssp EEEEEETTEEEEEEEE-
T ss_pred EEEEEECCEEEEEEEeC
Confidence 99888888888765544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-09 Score=89.09 Aligned_cols=132 Identities=19% Similarity=0.224 Sum_probs=99.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC---C---------------CCCeEEEEcCCCC-CCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP---E---------------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~rv~~~~~d~~~-~~p 175 (283)
.....+||..|||.|.-+..|+++ +.+++++|+ +..++.+. . .++|++.++|||+ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 455679999999999999999987 679999999 66665541 0 4678999999999 322
Q ss_pred ---CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCcc-chhhhhhhhhcccccccccCCccCC
Q 023384 176 ---PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEE-EHELTETKFLFDIVMSVNATGKERT 251 (283)
Q Consensus 176 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~t 251 (283)
.||+|+=+.+|+.++++...+..+.+.+.|+| ||+++++....+.... +||+ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 49999999999999999999999999999999 7886665554433221 2211 236
Q ss_pred HHHHHHHHHHCCCCeeeEEE
Q 023384 252 ESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~~~~ 271 (283)
.+|+++++. .+|++..+..
T Consensus 172 ~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEec
Confidence 899999998 7888776643
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=93.30 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=85.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC-CceEEEeccccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP-PADAFLFKLVFH 187 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh 187 (283)
....+|||+|||+|.+++.+++. +..+++++|+ +.+++.+++ ..++.+..++.....+ .||+|++....
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 35589999999999999887764 4568999999 777776654 3466677666433223 59999986433
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
+....+++++++.|+| ||.+++..... ...+++.+.+++. |+++
T Consensus 236 ----~~l~~ll~~~~~~Lkp---gG~li~sgi~~----------------------------~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVKP---GGWLILSGILE----------------------------TQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ----HHHHHHHHHHHHHcCC---CcEEEEEeCcH----------------------------hHHHHHHHHHHcc-Ccee
Confidence 2346789999999999 78887755321 1245677777766 8887
Q ss_pred eEEEcCC
Q 023384 268 KITPIFG 274 (283)
Q Consensus 268 ~~~~~~~ 274 (283)
++.....
T Consensus 280 ~~~~~~~ 286 (288)
T TIGR00406 280 EIRQREE 286 (288)
T ss_pred eEeccCC
Confidence 7765544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=90.02 Aligned_cols=136 Identities=15% Similarity=0.289 Sum_probs=102.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C--CC--CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F--IP--PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p--~~D~v~~ 182 (283)
.+...+|||+|||+|..+..++++.+..+++++++ ++..+.|++ .+|+++++.|+.. . .+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34478999999999999999999999999999999 666666654 7899999999987 2 22 3899999
Q ss_pred cccccCCChh----------------HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC
Q 023384 183 KLVFHGLGDE----------------DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT 246 (283)
Q Consensus 183 ~~vlh~~~d~----------------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
+=-.+.-.+. ....+++.+.+.||| ||++.++-..
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~-------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP-------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH--------------------------
Confidence 7665544333 246788999999999 7888775410
Q ss_pred CccCCHHHHHHHHHHCCCCeeeEEEc---CC---cceEEEEeC
Q 023384 247 GKERTESEWAKLFFDACFSHYKITPI---FG---MRFLIEIYP 283 (283)
Q Consensus 247 ~~~~t~~e~~~ll~~aGf~~~~~~~~---~~---~~~~i~~~~ 283 (283)
-...|+.+++++.+|...++..+ .+ ..-+|+++|
T Consensus 173 ---erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 173 ---ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred ---HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 02567888999988888776554 22 345666664
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-10 Score=90.73 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=75.6
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC--
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI-- 174 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~-- 174 (283)
..+++ .++ .....+|||||||+|..+..+++..+ +.+++++|+ ++.++.+++ .++++++.+|..+..
T Consensus 67 ~~~~~-~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 67 AMMTE-LLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHH-HhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 34444 444 56778999999999999999999865 577999998 888877654 357999999998732
Q ss_pred -CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 175 -PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 175 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..||+|++....++ +.+.+.+.|+| ||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence 25999998765543 34567788999 7887764
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-10 Score=94.51 Aligned_cols=97 Identities=23% Similarity=0.384 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC---CCC-CceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ---FIP-PADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p-~~D~v~~~~ 184 (283)
+...+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4557999999999999999999999999999999 888887664 3789999999865 233 599998753
Q ss_pred cccC--CChh-HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 185 VFHG--LGDE-DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 185 vlh~--~~d~-~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
++. .+.. ....+++++++.|+| ||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 1111 136899999999999 6777764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=98.74 Aligned_cols=131 Identities=16% Similarity=0.294 Sum_probs=93.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--CceEEEecc----
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--PADAFLFKL---- 184 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~~D~v~~~~---- 184 (283)
..+|||+|||+|.+++.+++.+|+.+++++|+ +.+++.+++ .+++.++.+|+++.++ .||+|++.-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 778777664 3589999999988543 499999832
Q ss_pred ----------cccCCC------h----hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 185 ----------VFHGLG------D----EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 185 ----------vlh~~~------d----~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
++.+.+ . +...++++++.+.|+| ||.+++ |...
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~----------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF----------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC-----------------------
Confidence 111111 0 1235678888999999 676654 4211
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEE-cCCcceEEEE
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITP-IFGMRFLIEI 281 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~ 281 (283)
...+.+.+++.+.||..+++.. ..+...++.+
T Consensus 272 -----~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 -----KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred -----chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 0245678889999998877655 3454444443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-09 Score=86.53 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=74.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC--CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP--PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p--~~D~v~~~~vlh 187 (283)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++.++.+|+.+.++ .||+|++.-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 445679999999999999998876 3458999999 777765543 3468899999987443 599999864322
Q ss_pred CCCh-------------------hHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 188 GLGD-------------------EDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 188 ~~~d-------------------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.-+. .....+++++.+.|+| ||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEecc
Confidence 1111 1235688999999999 79988765443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.4e-09 Score=87.66 Aligned_cols=96 Identities=15% Similarity=0.172 Sum_probs=73.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEcCCCCC---------CC--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAGDMFQF---------IP--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p--~~D~v~~~ 183 (283)
++...+|||||||+|.++..+++.. +..+++++|+.++. ...++.++.+|+.++ .+ .+|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 4566799999999999999999986 45799999995432 234689999999883 32 49999997
Q ss_pred ccccCCChhH---------HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 184 LVFHGLGDED---------GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 184 ~vlh~~~d~~---------~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...|...+.. ...+|+.+++.|+| ||.+++..
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~ 165 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV 165 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence 7665543321 24689999999999 78887754
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=93.80 Aligned_cols=148 Identities=11% Similarity=0.104 Sum_probs=94.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC---CCC--CceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ---FIP--PADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p--~~D~v~~~~ 184 (283)
.....+||||||+|.++..+++++|+..++++|+ +.+++.+.+ ..++.++.+|... .++ .+|.|++..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 3456899999999999999999999999999999 667655543 4689999999843 344 489998754
Q ss_pred cccCCChhH-----HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHH
Q 023384 185 VFHGLGDED-----GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLF 259 (283)
Q Consensus 185 vlh~~~d~~-----~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 259 (283)
.. -|+... ...+|+.++++|+| ||.+.+.....+-.... .........+......+...+-..++++-.
T Consensus 201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD~~~y~~~~--~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~ 274 (390)
T PRK14121 201 PV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTDSELYFEFS--LELFLKLPKAKIEIKKNAQLEVSSKYEDRW 274 (390)
T ss_pred CC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEECHHHHHHH--HHHHHhCCCceeecccCCCCCCCCHHHHHH
Confidence 32 232211 24789999999999 78887755322111000 000000000111011111223346788888
Q ss_pred HHCCCCeeeEE
Q 023384 260 FDACFSHYKIT 270 (283)
Q Consensus 260 ~~aGf~~~~~~ 270 (283)
.+.|-.+.++.
T Consensus 275 ~~~G~~Iy~l~ 285 (390)
T PRK14121 275 KKQNKDIYDLR 285 (390)
T ss_pred HHCCCCEEEEE
Confidence 88898776654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=77.86 Aligned_cols=92 Identities=25% Similarity=0.414 Sum_probs=75.1
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------CCCCeEEEEcCCCCCC----CCceEEEecccccCC
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------EADNLKYIAGDMFQFI----PPADAFLFKLVFHGL 189 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~rv~~~~~d~~~~~----p~~D~v~~~~vlh~~ 189 (283)
+|+|+|||.|..+..+++ .+..+++++|+ +..+..++ ...++++..+|+.+.. +++|++++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999999 66655444 1568899999998832 249999999999875
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.+....+++++.+.|+| ||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 55667899999999999 6877664
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=87.07 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=73.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC---CC-CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ---FI-PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~-p~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++..|..+++++|+ +++++.+++ ..+++++.+|..+ .. +.+|.+++..
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 55678999999999999999998889999999999 888776654 3578999998865 22 2367665421
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
......+++++.+.|+| ||++++...
T Consensus 118 ------~~~~~~~l~~~~~~Lkp---gG~li~~~~ 143 (196)
T PRK07402 118 ------GRPIKEILQAVWQYLKP---GGRLVATAS 143 (196)
T ss_pred ------CcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence 22346889999999999 788877764
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-10 Score=82.24 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=74.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C--CC--CceEEEecccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F--IP--PADAFLFKLVF 186 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p--~~D~v~~~~vl 186 (283)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+++ . .+ .||+|++.-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 889999999 777766553 4789999999988 3 43 49999998777
Q ss_pred cCCCh------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGD------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+.... +....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 64321 2346889999999999 78777653
|
... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.6e-10 Score=85.07 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=91.3
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC-C-C-CceEEEecccccC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF-I-P-PADAFLFKLVFHG 188 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~-~-p-~~D~v~~~~vlh~ 188 (283)
.+|||+|||.|+++..|++.--..+.+++|. +..++.|+. .+.|+|.+.|+++| + + +||+|+=...+..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 4999999999999999999865556789998 666665543 45599999999995 2 3 4999876655443
Q ss_pred C------ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHC
Q 023384 189 L------GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDA 262 (283)
Q Consensus 189 ~------~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 262 (283)
. .+......+..+.+.|+| ||.++|... -+|.+|+.+.++.-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSC-----------------------------N~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSC-----------------------------NFTKDELVEEFENF 196 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCC---CcEEEEEec-----------------------------CccHHHHHHHHhcC
Confidence 2 222334457888899999 677777442 13789999999999
Q ss_pred CCCeeeEEEcC
Q 023384 263 CFSHYKITPIF 273 (283)
Q Consensus 263 Gf~~~~~~~~~ 273 (283)
||+....+|.+
T Consensus 197 ~f~~~~tvp~p 207 (227)
T KOG1271|consen 197 NFEYLSTVPTP 207 (227)
T ss_pred CeEEEEeeccc
Confidence 99988877765
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-09 Score=88.19 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=97.0
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------------
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------------------------- 159 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------------- 159 (283)
..++ .+...+-....+|||||.+|.++..+++.|-...+.++|+ +..+..|++
T Consensus 47 ~rLk-~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 47 PRLK-VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred hhhh-hccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 3344 4433355668999999999999999999998889999999 666655542
Q ss_pred -----------------------CCCeEEEEcCCCC-CCCCceEEEec----ccccCCChhHHHHHHHHHHHhhccCCCC
Q 023384 160 -----------------------ADNLKYIAGDMFQ-FIPPADAFLFK----LVFHGLGDEDGLKILKKRRAAIASNGER 211 (283)
Q Consensus 160 -----------------------~~rv~~~~~d~~~-~~p~~D~v~~~----~vlh~~~d~~~~~iL~~~~~~L~p~~~g 211 (283)
..+..+..-||.+ ..|.||+|++- +|=-+|.|+-..++++++++.|.|
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---- 201 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---- 201 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc----
Confidence 1122233334554 34569999774 444479999999999999999999
Q ss_pred cEEEEEeeecCCCccchhhhhhhhhc-ccccccccCCccCCHHHHHHHHHHC--CCCeee
Q 023384 212 GKVIIIDIVINAEEEEHELTETKFLF-DIVMSVNATGKERTESEWAKLFFDA--CFSHYK 268 (283)
Q Consensus 212 g~lli~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~t~~e~~~ll~~a--Gf~~~~ 268 (283)
|.++|+|+---+.-. ...... -+.+ ..-.-...++.+..++.+. ||+-++
T Consensus 202 gGiLvvEPQpWksY~-----kaar~~e~~~~--ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 202 GGILVVEPQPWKSYK-----KAARRSEKLAA--NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred CcEEEEcCCchHHHH-----HHHHHHHHhhc--CccceecCHHHHHhhhhhhhhheeeec
Confidence 556777743211110 000000 0000 0012234789999999887 565543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.5e-09 Score=87.76 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=91.7
Q ss_pred hhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeE----EEEcCCCC-CCC-CceEE
Q 023384 111 ECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLK----YIAGDMFQ-FIP-PADAF 180 (283)
Q Consensus 111 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~----~~~~d~~~-~~p-~~D~v 180 (283)
.++....+..+|||+|||+|.++++.++.. ..+++++|+ |..++.+++ ...|. ....+..+ +.. .||+|
T Consensus 155 ~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvI 233 (300)
T COG2264 155 ALEKLLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVI 233 (300)
T ss_pred HHHHhhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEE
Confidence 333334577999999999999999888763 447999999 777777765 23333 22233333 222 59998
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHH
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 260 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 260 (283)
+.+= | .+ -.+++...+.+.++| ||.+++.- ++.+ ..+.+.+.++
T Consensus 234 VANI-L---A~-vl~~La~~~~~~lkp---gg~lIlSG-Il~~---------------------------q~~~V~~a~~ 277 (300)
T COG2264 234 VANI-L---AE-VLVELAPDIKRLLKP---GGRLILSG-ILED---------------------------QAESVAEAYE 277 (300)
T ss_pred Eehh-h---HH-HHHHHHHHHHHHcCC---CceEEEEe-ehHh---------------------------HHHHHHHHHH
Confidence 8743 3 22 356888999999999 67766544 2211 2567788999
Q ss_pred HCCCCeeeEEEcCCcceEEE
Q 023384 261 DACFSHYKITPIFGMRFLIE 280 (283)
Q Consensus 261 ~aGf~~~~~~~~~~~~~~i~ 280 (283)
++||++.++.....+.+++-
T Consensus 278 ~~gf~v~~~~~~~eW~~i~~ 297 (300)
T COG2264 278 QAGFEVVEVLEREEWVAIVG 297 (300)
T ss_pred hCCCeEeEEEecCCEEEEEE
Confidence 99999999888877776653
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=87.27 Aligned_cols=129 Identities=20% Similarity=0.291 Sum_probs=92.1
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C-CCeEEEEcCCCCCCC-CceEEEecc--ccc---
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----A-DNLKYIAGDMFQFIP-PADAFLFKL--VFH--- 187 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~rv~~~~~d~~~~~p-~~D~v~~~~--vlh--- 187 (283)
+|||||||+|..++.+++++|++++++.|+ |..++.|++ . .++.++.+|.|++++ .||+|+++= +=.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999999999999999999 888877764 2 667778889999766 599998732 111
Q ss_pred CCC------------------hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCcc
Q 023384 188 GLG------------------DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE 249 (283)
Q Consensus 188 ~~~------------------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
+.. -+-..+++..+.+.|+| |.+++++.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEECCC---------------------------
Confidence 010 12346778888889998 55566553221
Q ss_pred CCHHHHHHHHHHCC-CCeeeEEEc-CCcceEEEE
Q 023384 250 RTESEWAKLFFDAC-FSHYKITPI-FGMRFLIEI 281 (283)
Q Consensus 250 ~t~~e~~~ll~~aG-f~~~~~~~~-~~~~~~i~~ 281 (283)
..+++++++.+.| |..+.+.+- .+...++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 2567889999999 665555544 334444443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=85.78 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=86.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCCCC-----CCceEEEeccccc--
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQFI-----PPADAFLFKLVFH-- 187 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~~~-----p~~D~v~~~~vlh-- 187 (283)
..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+++.. ..||+|++.-...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888877765 233688999998743 2499999853221
Q ss_pred ----CCChh------------------HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccccc
Q 023384 188 ----GLGDE------------------DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNA 245 (283)
Q Consensus 188 ----~~~d~------------------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
..+++ -..++++.+.+.|+| ||++++.- ..
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~-~~------------------------ 218 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVET-SE------------------------ 218 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEE-Cc------------------------
Confidence 11111 134788888899999 67766432 11
Q ss_pred CCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 246 TGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 246 ~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
...+++.+++++.||+..-+.
T Consensus 219 ----~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 219 ----RQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred ----chHHHHHHHHHHCCCCceeeE
Confidence 024567888999999765443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.5e-08 Score=77.25 Aligned_cols=177 Identities=13% Similarity=0.158 Sum_probs=102.8
Q ss_pred hhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhh----hhhhHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 023384 54 PYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASD----TEILTSFVVKAECKQIFEGLGSLVDVGGGN 129 (283)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~----~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~ 129 (283)
-++.|-|.+-+.. + .+-++.+.++|+....|+.+.+.. -....+.+++ .+. ..+....|.|+|||.
T Consensus 14 rFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~-~l~-~~~~~~viaD~GCGd 83 (219)
T PF05148_consen 14 RFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIE-WLK-KRPKSLVIADFGCGD 83 (219)
T ss_dssp HHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHH-HHC-TS-TTS-EEEES-TT
T ss_pred chHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHH-HHH-hcCCCEEEEECCCch
Confidence 3556666665443 1 123355667777766666655532 2223455555 333 134456899999999
Q ss_pred cHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-CCCC--ceEEEecccccCCChhHHHHHHHHHHHhhc
Q 023384 130 GSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FIPP--ADAFLFKLVFHGLGDEDGLKILKKRRAAIA 206 (283)
Q Consensus 130 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~ 206 (283)
+.++..+.+ ..++.-+|+-.. .++ ++..|+-. |+++ .|+++++..|-. -+....|+++.|+||
T Consensus 84 A~la~~~~~---~~~V~SfDLva~------n~~--Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK 149 (219)
T PF05148_consen 84 AKLAKAVPN---KHKVHSFDLVAP------NPR--VTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLK 149 (219)
T ss_dssp -HHHHH--S------EEEEESS-S------STT--EEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEE
T ss_pred HHHHHhccc---CceEEEeeccCC------CCC--EEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheec
Confidence 999966432 357888998321 123 56788977 8764 899999887742 235688999999999
Q ss_pred cCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 207 SNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 207 p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
| ||.+.|.|... +.-+.+++.+.+++.||+....-..+....+++.+|
T Consensus 150 ~---~G~L~IAEV~S--------------------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 150 P---GGILKIAEVKS--------------------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp E---EEEEEEEEEGG--------------------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred c---CcEEEEEEecc--------------------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 9 79999988422 111568899999999999887544455566666654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=82.94 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=68.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC---CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP---PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---~~D~v~~~~v 185 (283)
..+..+|||||||+|..+..+++.. .+++++|. ++.++.+++ ..++++..+|..+..+ .||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 5667899999999999998777775 37899998 777766653 3469999999877432 4999999876
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++++ .+.+.+.|+| ||++++.-
T Consensus 154 ~~~~--------~~~l~~~L~~---gG~lv~~~ 175 (212)
T PRK00312 154 APEI--------PRALLEQLKE---GGILVAPV 175 (212)
T ss_pred chhh--------hHHHHHhcCC---CcEEEEEE
Confidence 6543 4567789999 78877643
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-08 Score=88.29 Aligned_cols=120 Identities=16% Similarity=0.053 Sum_probs=86.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
+.+..+|||+|||+|.++++.+.. ..+++++|+ +.++..++. ...+.+..+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 566789999999999999886653 678999999 777765543 2347899999998 654 4999998532
Q ss_pred cc-------CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHH
Q 023384 186 FH-------GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 258 (283)
Q Consensus 186 lh-------~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 258 (283)
.. +...+...++|+.+++.|+| ||+++++-+ + ..++.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~---~----------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVP---T----------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEc---C----------------------------CCCHHHH
Confidence 21 11123346899999999999 788877542 1 1134578
Q ss_pred HHHCCCCeeeEEEc
Q 023384 259 FFDACFSHYKITPI 272 (283)
Q Consensus 259 l~~aGf~~~~~~~~ 272 (283)
++++|| +...+..
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 999999 7766554
|
This family is found exclusively in the Archaea. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.2e-09 Score=88.48 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCC--CC--CCceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQ--FI--PPADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~--~~--p~~D~v 180 (283)
++..+||+||||+|..+..+++..+..+++++|+ +++++.+++ .+|++++.+|..+ .. ..||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4568999999999999999997655668999999 888877664 4689999999876 21 249999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhhccCCCCcEEEE
Q 023384 181 LFKLVFHGLGDED--GLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 181 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++...-+..+... ...+++.+++.|+| ||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 9865433222221 35778999999999 676654
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=82.29 Aligned_cols=95 Identities=15% Similarity=0.223 Sum_probs=70.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-C--------CC--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-F--------IP--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------~p--~~D~v~~~ 183 (283)
.....+|||+|||+|.++..+++++ +..+++++|+.+.. ...++.++.+|+.+ + .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4667899999999999999999887 56789999994432 23568889999876 2 23 49999985
Q ss_pred cccc---CCCh------hHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFH---GLGD------EDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh---~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
...| .|.- +...++|+++++.|+| ||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 4322 1211 2235789999999999 7887774
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-08 Score=83.19 Aligned_cols=141 Identities=23% Similarity=0.353 Sum_probs=81.2
Q ss_pred CCCeEEEEcCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCC--eEEEEcCCCCC---C--C---C-ce
Q 023384 118 GLGSLVDVGGGN---GSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADN--LKYIAGDMFQF---I--P---P-AD 178 (283)
Q Consensus 118 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~r--v~~~~~d~~~~---~--p---~-~D 178 (283)
+...+||||||- |+.-....+..|+.+++.+|. |-++..++. .++ ..++.+|+.++ + | . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999993 344444455689999999999 777877764 344 89999999984 1 1 1 23
Q ss_pred -----EEEecccccCCCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCH
Q 023384 179 -----AFLFKLVFHGLGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 179 -----~v~~~~vlh~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
.+++..+||+.+| ++...+++.++++|.| |+.|.|..... +..... .................||.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~-d~~p~~----~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATD-DGAPER----AEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB--TTSHHH----HHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCC-CCCHHH----HHHHHHHHHcCCCCceecCH
Confidence 7899999999988 7789999999999999 66666655544 322211 01112222222345678999
Q ss_pred HHHHHHHHHCCCCeee
Q 023384 253 SEWAKLFFDACFSHYK 268 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~ 268 (283)
+|+.++|. ||+.++
T Consensus 220 ~ei~~~f~--g~elve 233 (267)
T PF04672_consen 220 EEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHCCT--TSEE-T
T ss_pred HHHHHHcC--CCccCC
Confidence 99999996 888765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.5e-08 Score=81.46 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=75.5
Q ss_pred CCeEEEEcCCccHH--HHH--HHHHCC----CCeEEEeec-hHHHhcCCC------------------------------
Q 023384 119 LGSLVDVGGGNGSL--SRI--ISEAFP----GIKCTVLDL-PHVVANLPE------------------------------ 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~--~~~--l~~~~p----~~~~~~~D~-~~~~~~a~~------------------------------ 159 (283)
.-+|...||+||.- +++ +.+..+ +.++++.|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 46999999999973 333 334332 467999999 777766542
Q ss_pred -------CCCeEEEEcCCCC-CCC---CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 160 -------ADNLKYIAGDMFQ-FIP---PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 160 -------~~rv~~~~~d~~~-~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..+|.|..+|..+ +.| .||+|++.++|.+++++...+++++++++|+| ||.+++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 2567899999998 443 49999999999999999999999999999999 6766553
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.7e-08 Score=83.58 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=75.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC----CCeEEEeec-hHHHhcCCC------CCCeEE--EEcCCCCC---CC----
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP----GIKCTVLDL-PHVVANLPE------ADNLKY--IAGDMFQF---IP---- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~~rv~~--~~~d~~~~---~p---- 175 (283)
+.....|+|+|||+|.-...|+++.. ..+++.+|+ .+.++.+.+ ...+++ +.+||.+. ++
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 44556899999999998887777663 467999999 556554432 244555 78898662 21
Q ss_pred --CceE-EEecccccCCChhHHHHHHHHHHH-hhccCCCCcEEEE-EeeecC
Q 023384 176 --PADA-FLFKLVFHGLGDEDGLKILKKRRA-AIASNGERGKVII-IDIVIN 222 (283)
Q Consensus 176 --~~D~-v~~~~vlh~~~d~~~~~iL~~~~~-~L~p~~~gg~lli-~d~~~~ 222 (283)
...+ +++.+.+.+++++++..+|+++++ .|+| |+.++| +|...+
T Consensus 154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG~D~~k~ 202 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIGLDGCKD 202 (319)
T ss_pred cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEecCCCCC
Confidence 1344 466779999999999999999999 9999 566665 565433
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.1e-08 Score=79.20 Aligned_cols=103 Identities=18% Similarity=0.299 Sum_probs=84.7
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHH-HCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC-CC
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISE-AFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF-IP 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~-~p 175 (283)
.|+. ... .....+|+|.|-|+|.++..|+. ..|.-+++.+|+ ++..+.|.+ .+++.+..+|+.+. .+
T Consensus 85 ~I~~-~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVA-RLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHH-HcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 3444 444 78889999999999999999997 568899999999 777777664 67799999999983 34
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.+|++++ |++++. +.+.+++++|+| ||.+.+.-+..
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTV 198 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCH
Confidence 5999998 778876 779999999999 78888876554
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=85.48 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CC-C-CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FI-P-PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~-p-~~D~v 180 (283)
++.++||+||||.|..+.++++..+..+++++|+ +.+++.+++ .+|++++.+|..+ .. + .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5668999999999999999986633457999999 777776654 3699999999754 23 2 49999
Q ss_pred EecccccCCChh--HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 181 LFKLVFHGLGDE--DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 181 ~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++...-+.-+.. -...+++.++++|+| ||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence 985433322211 135789999999999 677654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=85.95 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=73.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEEcCCCCC---CC-Cc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------------ADNLKYIAGDMFQF---IP-PA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~---~p-~~ 177 (283)
..+..+||+||||+|..+.++++..+..+++++|+ +++++.|++ .+|++++.+|..+- .+ .|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 35568999999999999999998656678999999 888876662 47999999998872 22 49
Q ss_pred eEEEeccccc---CCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 178 DAFLFKLVFH---GLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 178 D~v~~~~vlh---~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
|+|++...-. ....-....+++.++++|+| ||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9999863210 01112235789999999999 6776554
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=84.15 Aligned_cols=98 Identities=15% Similarity=0.161 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC--C--CCCceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ--F--IPPADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~--~p~~D~v~ 181 (283)
++..+||+||||+|..+..+++..+..+++++|+ +++++.+++ ..+++++.+|.++ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766778999999 777766553 3678888888765 1 22599999
Q ss_pred ecccccCCChhH--HHHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDED--GLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+....+.-+... ....++++++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 866533222222 45788999999999 6777664
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-08 Score=83.78 Aligned_cols=92 Identities=14% Similarity=0.275 Sum_probs=70.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC---CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI---PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~---p~~D~v~~~~ 184 (283)
.+...+|||||||+|.++..+++..+. .+++++|+ +++++.+++ .+++.++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 556689999999999999999998764 57899999 777766553 457999999987632 2499999976
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+++. ...+.+.|+| ||++++..
T Consensus 158 g~~~i--------p~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV--------PETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred chHHh--------HHHHHHhcCC---CCEEEEEe
Confidence 55433 3346678999 78877743
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-08 Score=80.44 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=75.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---------CCCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---------IPPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---------~p~~ 177 (283)
..+.++|||||||+|..+..+++..| +.+++.+|+ ++.++.+++ .++++++.+|..+- .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998865 689999999 777776654 57899999999762 1259
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
|+|++- -..+.-..++..+.+.|+| || ++++|.++-
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG-~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GG-IIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---Ce-EEEEEcCCc
Confidence 999883 2334556889999999999 45 566665543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-07 Score=88.55 Aligned_cols=97 Identities=16% Similarity=0.309 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEEcCCCCC---CC-Cc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-------------ADNLKYIAGDMFQF---IP-PA 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~---~p-~~ 177 (283)
++.++|||||||+|..+.++++ +|. .+++++|+ +++++.+++ .+|++++.+|..+- .+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568999999999999999987 565 79999999 888887654 26899999998772 23 59
Q ss_pred eEEEecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 178 DAFLFKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 178 D~v~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999986433221111 124688999999999 6776554
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-08 Score=94.03 Aligned_cols=121 Identities=21% Similarity=0.257 Sum_probs=86.6
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------------CCCeEEEEcCCCCCCC-
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------------------ADNLKYIAGDMFQFIP- 175 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~rv~~~~~d~~~~~p- 175 (283)
.+|||||||+|..++.+++++|+.+++++|+ +.+++.|++ .+|++|+.+|+++..+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 5899999999999999999999999999999 777765532 2479999999998543
Q ss_pred ---CceEEEeccc--c--------------------cCC----------Chh----HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 176 ---PADAFLFKLV--F--------------------HGL----------GDE----DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 176 ---~~D~v~~~~v--l--------------------h~~----------~d~----~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.||+|+.+=. . |.. .++ -..++++.+.+.|+| ||. ++
T Consensus 200 ~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p---gG~-l~ 275 (1082)
T PLN02672 200 NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP---MGI-MI 275 (1082)
T ss_pred cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC---CCE-EE
Confidence 4899887421 1 100 001 125677777788898 554 44
Q ss_pred EeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH-HHHHHCCCCeeeEEEc
Q 023384 217 IDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA-KLFFDACFSHYKITPI 272 (283)
Q Consensus 217 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~ 272 (283)
+|.-. ...+.+. +++++.||+.++++..
T Consensus 276 lEiG~----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 276 FNMGG----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred EEECc----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 55321 1234667 6899999999888765
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=78.47 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=89.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCC-CceEEEecccccCCChhHHH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIP-PADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~d~~~~ 195 (283)
...++||||.|.|..+..++..|.+ +++.+. +.+....++ ...+++..|-....+ .||+|.+.++|-...++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~-- 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL-- 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCHH--
Confidence 3468999999999999999998876 566666 455444432 344444443333222 599999999998777764
Q ss_pred HHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhh--hccc-cccccc-CCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 196 KILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF--LFDI-VMSVNA-TGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~--~~~~-~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
.+|+.++++|+| +|++++. .++|-.. +.+... ...- ..+-.. ...|-..+.+.+.|+.+||++....+
T Consensus 169 ~LL~~i~~~l~p---~G~lilA-vVlP~~p----yVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 169 TLLRDIRRALKP---NGRLILA-VVLPFRP----YVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHHhCC---CCEEEEE-EEecccc----cEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 889999999999 5766553 3333211 000000 0000 001011 11222334455889999999999877
Q ss_pred cC
Q 023384 272 IF 273 (283)
Q Consensus 272 ~~ 273 (283)
.|
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 65
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-07 Score=77.63 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCccH----HHHHHHHHCC-----CCeEEEeec-hHHHhcCCC----------------------------
Q 023384 118 GLGSLVDVGGGNGS----LSRIISEAFP-----GIKCTVLDL-PHVVANLPE---------------------------- 159 (283)
Q Consensus 118 ~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 159 (283)
+.-+|.-.||+||. .++.+.+.+| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999997 4555666675 478899999 778877652
Q ss_pred -------CCCeEEEEcCCCC-C-CCC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 160 -------ADNLKYIAGDMFQ-F-IPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 160 -------~~rv~~~~~d~~~-~-~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...|.|..+|..+ + .++ ||+|+|++||=.++.+.-.+++++++..|+| ||.+++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEcc
Confidence 2568999999998 4 444 9999999999999999999999999999999 67777743
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-08 Score=80.36 Aligned_cols=97 Identities=12% Similarity=0.199 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCccHH--HHH--HHHHC----C-CCeEEEeec-hHHHhcCCC----------------------------
Q 023384 118 GLGSLVDVGGGNGSL--SRI--ISEAF----P-GIKCTVLDL-PHVVANLPE---------------------------- 159 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~--~~~--l~~~~----p-~~~~~~~D~-~~~~~~a~~---------------------------- 159 (283)
..-+|...||++|.- +++ +.+.. + ..++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 457899999999973 333 33311 2 467899999 778877652
Q ss_pred ------CCCeEEEEcCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 160 ------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 160 ------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..+|+|...|..+ +.+ .+|+|+|++||-.++++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 3789999999999 322 49999999999999999999999999999999 6766663
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.7e-08 Score=75.91 Aligned_cols=77 Identities=25% Similarity=0.485 Sum_probs=59.2
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCC--c
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPP--A 177 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~--~ 177 (283)
.+++ .++ ..+..+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+. +
T Consensus 4 ~i~~-~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 4 KIVR-AAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHH-hcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 3445 444 566679999999999999999988 578999999 667666543 4589999999998 6553 8
Q ss_pred eEEEeccccc
Q 023384 178 DAFLFKLVFH 187 (283)
Q Consensus 178 D~v~~~~vlh 187 (283)
|.|+..-..|
T Consensus 79 d~vi~n~Py~ 88 (169)
T smart00650 79 YKVVGNLPYN 88 (169)
T ss_pred CEEEECCCcc
Confidence 8887765544
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4e-08 Score=79.66 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE-------EcCCCCCC--C-CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYI-------AGDMFQFI--P-PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~-------~~d~~~~~--p-~~D~v~~~~v 185 (283)
++...++|||||+|..++.++..|. ++++.|. +.+++.+++..+++.. ..++.+-. + +.|+|++..+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3445899999999988888888765 5799999 8889988874443321 11222201 2 3899999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+|.++-+ ++.+.++++||+ + ||.+++....
T Consensus 110 ~HWFdle---~fy~~~~rvLRk-~-Gg~iavW~Y~ 139 (261)
T KOG3010|consen 110 VHWFDLE---RFYKEAYRVLRK-D-GGLIAVWNYN 139 (261)
T ss_pred HHhhchH---HHHHHHHHHcCC-C-CCEEEEEEcc
Confidence 9977665 788999999998 3 5666665543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=77.37 Aligned_cols=98 Identities=22% Similarity=0.307 Sum_probs=77.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-------CCCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-------IPPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-------~p~~ 177 (283)
..+.++||+||+++|..+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + ..+|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34568999999999999999999987 589999999 777776654 5799999999876 2 1259
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
|+|++-. ...+-...++.+.+.|+| |.++|+|.++.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l~ 158 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVLW 158 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTTG
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEccccc
Confidence 9999944 455667889999999999 77788886654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-07 Score=78.25 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=71.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC-CceEEEecccccCCCh
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF---PGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLGD 191 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d 191 (283)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++ ..++.++.+|+.. +.. .||+|+++=-.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 4678999999 888888876 4578999999987 444 5999999766553221
Q ss_pred ----------hHHHHHHHHHHHhhccCCCCcEE
Q 023384 192 ----------EDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 192 ----------~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
.-...+++++.+.+++ |.+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ----GTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC----CEE
Confidence 1134588888887776 665
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-06 Score=71.44 Aligned_cols=157 Identities=16% Similarity=0.188 Sum_probs=103.9
Q ss_pred hhHhhcCccHHHHHHHHhhhhh----hhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHH
Q 023384 79 WEFMNQNPGINQRFNEAMASDT----EILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVV 154 (283)
Q Consensus 79 ~~~~~~~~~~~~~f~~~m~~~~----~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~ 154 (283)
++.+.++|.....|+.+.+... ..-.+.+++ .+. .-+....|-|+|||.+.++. --..++.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~-~ik-~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a-- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIR-KIK-RRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA-- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHH-HHH-hCcCceEEEecccchhhhhh-----ccccceeeeeeec--
Confidence 3455667776666666555322 122344555 443 13566789999999999886 1233577788732
Q ss_pred hcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhh
Q 023384 155 ANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231 (283)
Q Consensus 155 ~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~ 231 (283)
.+-.++..|+.. |++ +.|+++++..|-. .+....+++++++|+| ||.+.|.|.-.
T Consensus 210 ------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~---gG~l~IAEv~S---------- 267 (325)
T KOG3045|consen 210 ------VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP---GGLLYIAEVKS---------- 267 (325)
T ss_pred ------CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc---CceEEEEehhh----------
Confidence 233457788888 766 3899888776642 2356889999999999 89999988321
Q ss_pred hhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEe
Q 023384 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIY 282 (283)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 282 (283)
+.-+..++.+.|...||...+..-.+....+++..
T Consensus 268 ----------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefk 302 (325)
T KOG3045|consen 268 ----------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFK 302 (325)
T ss_pred ----------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEe
Confidence 12245568899999999887765555566666654
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=84.15 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-C--C-C-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-F--I-P-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~-p-~~D~v~~~~ 184 (283)
.....+|||+|||+|..+..+++..++.+++++|+ +..+..+++ .-+++++.+|..+ + . + .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45668999999999999999999998889999999 777766654 3357899999986 2 2 2 499998522
Q ss_pred ------ccc-------CCChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 185 ------VFH-------GLGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 185 ------vlh-------~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
++. ....++ ..++|+++.+.|+| ||++++....+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 111 112222 24789999999999 79988777544
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-07 Score=76.15 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=76.2
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC--
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI-- 174 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~-- 174 (283)
++. .++ ..++.+|||-|.|+|.++..|++. .|.-+++-+|. .+..+.|++ .++|++...|+.+ -+
T Consensus 32 I~~-~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 32 ILM-RLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHH-HTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHH-HcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 444 455 788899999999999999999975 68999999999 666666654 5789999999965 33
Q ss_pred ---CCceEEEecccccCCChhHHHHHHHHHHHhh-ccCCCCcEEEEEeeec
Q 023384 175 ---PPADAFLFKLVFHGLGDEDGLKILKKRRAAI-ASNGERGKVIIIDIVI 221 (283)
Q Consensus 175 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L-~p~~~gg~lli~d~~~ 221 (283)
..+|.|++ |++++. ..+..+.++| +| ||++.+.-+.+
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~i 149 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCI 149 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSH
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCH
Confidence 24899988 778876 6699999999 88 78888876544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=84.88 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=77.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C--CCeEEEEcCCCC-CC----CCceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----A--DNLKYIAGDMFQ-FI----PPADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~--~rv~~~~~d~~~-~~----p~~D~v~~ 182 (283)
.....+|||+|||+|..+..+++..++.+++++|+ ++.++.+++ + .++.+..+|... +. ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 55668999999999999999999988889999999 777766553 1 134447777765 22 24999986
Q ss_pred c------ccccCCCh-------hH-------HHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 183 K------LVFHGLGD-------ED-------GLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 183 ~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
. .+++..++ ++ -.++|+++.+.||| ||++++....+..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~ 373 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP 373 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence 2 35655443 11 25799999999999 7999888766643
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-07 Score=79.76 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEEcCCCCC-----C-
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------------ADNLKYIAGDMFQF-----I- 174 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~~d~~~~-----~- 174 (283)
...+|||+|||.|.-+.-...+. -..++++|+ ...+++|++ .-...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 56899999999999888887763 346899999 666766653 12346788888862 1
Q ss_pred -C--CceEEEecccccC-C-ChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 175 -P--PADAFLFKLVFHG-L-GDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 175 -p--~~D~v~~~~vlh~-~-~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+ .||+|-+...||. | +.+.+..+|+++.+.|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence 2 4999999999997 3 456677799999999999 67665544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=76.61 Aligned_cols=99 Identities=13% Similarity=0.271 Sum_probs=71.1
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-- 175 (283)
.+++ .++ +....+|||||||+|..+..++... +.-+++.+|. +...+.|++ ..+|.++.+|.....+
T Consensus 63 ~~l~-~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 63 RMLE-ALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHH-HTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHH-HHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 4455 555 7788999999999999999998875 4457899998 777777765 4589999999887443
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.||.|++.......+. .+.+-|++ ||++++--
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEE
Confidence 4999999887754332 35567899 78887743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-07 Score=82.95 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=75.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~ 183 (283)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++ ..+++++.+|+.+ . ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556899999999999999999986 6789999999 777766543 2458999999976 2 33 59999874
Q ss_pred cc------ccC-------CChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 LV------FHG-------LGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ~v------lh~-------~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
-- +.+ ++..+ ...+|+++.+.|+| ||+++.....+
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence 21 111 11122 24689999999999 78887655433
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.4e-07 Score=82.88 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=76.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-CceEEEec--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP-PADAFLFK-- 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~v~~~-- 183 (283)
.....+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ..+|+++.+|..+ +.+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34567999999999999999888764 468999999 777766654 3468999999987 322 49999962
Q ss_pred ----ccc-------cCCChhHH-------HHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 184 ----LVF-------HGLGDEDG-------LKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 184 ----~vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
.++ ..++.++. .++|+++.+.|+| ||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 111 12333322 3689999999999 788888775554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.2e-08 Score=77.55 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=91.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCC---CCeEEE-EcCCCC--CCCCceEEEecccccC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEA---DNLKYI-AGDMFQ--FIPPADAFLFKLVFHG 188 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~rv~~~-~~d~~~--~~p~~D~v~~~~vlh~ 188 (283)
.....++||+|||||.....+...- -+.+++|+ ..+++.|.+. +....- ..+|.. ....+|+|....||-.
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 3447899999999999999887763 35689999 7788887752 111111 112443 2235999999999987
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
+.+-+ .++--+...|+| ||-+.+.-...++.... ++.-..-...+++-++++++..||++++
T Consensus 201 lG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f-------------~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 201 LGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGGF-------------VLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred hcchh--hHHHHHHHhcCC---CceEEEEecccCCCCCe-------------ecchhhhhccchHHHHHHHHhcCceEEE
Confidence 77744 789999999999 66665544333332211 0000001123677789999999999998
Q ss_pred EEEc
Q 023384 269 ITPI 272 (283)
Q Consensus 269 ~~~~ 272 (283)
+.++
T Consensus 263 ~~~t 266 (287)
T COG4976 263 IEDT 266 (287)
T ss_pred eecc
Confidence 8665
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=73.66 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=66.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEEcCCCCCC------C-CceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQFI------P-PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~------p-~~D~ 179 (283)
.....+|||||||+|..++.+++.++..+++..|.+++++..+. ..++.+...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 44568999999999999999999878889999999666543332 477888888886632 2 4999
Q ss_pred EEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
|+.+.++++ ++....+++-+.+.|+| ++.+++.....
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence 999999984 56677889999999999 56666665544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.9e-07 Score=73.70 Aligned_cols=91 Identities=16% Similarity=0.327 Sum_probs=67.5
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C--CC--CceEEEecccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F--IP--PADAFLFKLVF 186 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~--~p--~~D~v~~~~vl 186 (283)
..+||||||.|.++..+|+.+|+..++++|+ ...+..+.+ ..++.++.+|... + ++ ..|-|++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE---
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe---
Confidence 4899999999999999999999999999999 655544432 6899999999887 1 23 36666552
Q ss_pred cCCChh-----------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGDE-----------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d~-----------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+||+ -...+|+.+++.|+| ||.+.+..
T Consensus 96 --FPDPWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 96 --FPDPWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp --S-----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred --CCCCCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 3433 125789999999999 78886655
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.9e-07 Score=71.47 Aligned_cols=97 Identities=11% Similarity=0.209 Sum_probs=74.7
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC---C
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP---P 176 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---~ 176 (283)
+++ .+. .+...+|||||||+|..+..+++.-- +++.+++ ++..+.|++ ..+|.++.+|-..-.| .
T Consensus 64 m~~-~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 64 MLQ-LLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHH-HhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 344 454 77889999999999999999888754 8899998 777777764 4569999999998433 5
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
||.|+.....-..|+ .+.+-|+| ||++++-.-
T Consensus 139 yD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence 999999776654444 34556898 799888664
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-07 Score=73.58 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=83.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEE-cCCCC--C---CCCceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIA-GDMFQ--F---IPPADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~-~d~~~--~---~p~~D~v 180 (283)
.++.++||+||.+.|..++.++...| +.+.+.+|+ ++..+.|++ .++|..+. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999999 889999999 888877775 67788888 57766 2 2359999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCc
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEE 225 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~ 225 (283)
++ +-...+-...|..+.+.|+| |.++|+|.++....
T Consensus 137 FI-----DadK~~yp~~le~~~~lLr~----GGliv~DNvl~~G~ 172 (219)
T COG4122 137 FI-----DADKADYPEYLERALPLLRP----GGLIVADNVLFGGR 172 (219)
T ss_pred EE-----eCChhhCHHHHHHHHHHhCC----CcEEEEeecccCCc
Confidence 98 44556667889999999999 77788887776643
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.9e-07 Score=76.09 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=78.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C------CCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I------PPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~ 177 (283)
..+.++|||||+++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.||..+- + +.|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 56679999999999999999999876 668999999 777766654 57999999998762 1 259
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
|+|++- -+...-...++.+.+.|+| |.++++|.++..
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~----GGvIV~DNvL~~ 232 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRV----GGVIVMDNVLWH 232 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC----CcEEEEecCccC
Confidence 999984 3456678889999999999 455666766544
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.4e-07 Score=81.02 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=61.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC-----CC--CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF-----IP--PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-----~p--~~D~v~ 181 (283)
.....+|||+|||+|.++..+++.. .+++++|+ +++++.+++ .++++++.+|+.+. ++ .||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3456799999999999999999885 58999999 888877664 35799999998752 21 389998
Q ss_pred ecccccCCChhHHHHHHHHHHHhhcc
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
+. -+...+..+++.+.+ ++|
T Consensus 373 ~d-----PPr~g~~~~~~~l~~-~~~ 392 (443)
T PRK13168 373 LD-----PPRAGAAEVMQALAK-LGP 392 (443)
T ss_pred EC-----cCCcChHHHHHHHHh-cCC
Confidence 73 232223355555554 577
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.1e-07 Score=81.26 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=77.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C----C--CCceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F----I--PPADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~----~--p~~D~v 180 (283)
.....+|||+|||+|..+..+++... ..+++++|+ ++.++.+++ ..+|+++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45668999999999999999999864 568999999 777766654 3468999999876 3 1 149999
Q ss_pred Eec------ccccCCCh-------hH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 181 LFK------LVFHGLGD-------ED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 181 ~~~------~vlh~~~d-------~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
++. .+++..++ ++ -.++|+++.+.||| ||+++.....+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 973 34444333 11 25889999999999 79888776544
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.8e-07 Score=76.42 Aligned_cols=144 Identities=16% Similarity=0.152 Sum_probs=93.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEE----cCCCCCC--C--CceEE
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIA----GDMFQFI--P--PADAF 180 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~----~d~~~~~--p--~~D~v 180 (283)
...++||||||+|.....++.+.++.+++++|+ +..++.|++ .++|++.. .+++..+ + .||++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888999999999999999 777777664 35777753 2444422 2 49999
Q ss_pred EecccccCCChhH---HHHHHHHHH----------------HhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc
Q 023384 181 LFKLVFHGLGDED---GLKILKKRR----------------AAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM 241 (283)
Q Consensus 181 ~~~~vlh~~~d~~---~~~iL~~~~----------------~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
++.=-+|.-..+. +.+-.++.. +.+-+ ||.+-++..+..+.... .....+..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~~~------~~~~gwft 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESKAF------AKQVLWFT 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHHHH------HhhCcEEE
Confidence 9998888654432 122223222 22224 56666665555443211 11111111
Q ss_pred ccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 242 SVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 242 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
..-|+.-+.+.+.+.|++.|.+.++++..
T Consensus 265 --smv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 265 --SLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred --EEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11255568999999999999988887776
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=70.54 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=69.8
Q ss_pred cCC--CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCC--eEEEEcCCCC--CCC--CceEEEecccc
Q 023384 116 FEG--LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADN--LKYIAGDMFQ--FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~--~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~r--v~~~~~d~~~--~~p--~~D~v~~~~vl 186 (283)
+++ ..-|||||||+|..+..+... ...++++|+ |++++.|.+ .. -.++-+|+-+ |++ .||.+|+...+
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeee
Confidence 444 678999999999999887765 578999999 999988875 22 3477888888 443 39998876655
Q ss_pred cCC---------ChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 187 HGL---------GDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 187 h~~---------~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
..+ +......++..++.+|++ |++.++
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~ 158 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL 158 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence 321 233455667789999998 677554
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=70.72 Aligned_cols=156 Identities=17% Similarity=0.242 Sum_probs=98.3
Q ss_pred hHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHH
Q 023384 57 SLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRII 136 (283)
Q Consensus 57 ~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l 136 (283)
.|.+.-++-+|--|...-|..+||.+..-|+.-..-.+ ...-+..+..+.. ..+...++|+|+|+..-++.+
T Consensus 25 GL~qtpktlpP~~FYD~~GS~LFe~I~~LPEYYpTRtE--aaIl~~~a~Eia~------~~g~~~lveLGsGns~Ktr~L 96 (321)
T COG4301 25 GLQQTPKTLPPKYFYDDRGSELFEQITRLPEYYPTRTE--AAILQARAAEIAS------ITGACTLVELGSGNSTKTRIL 96 (321)
T ss_pred HhhcCCcCCCCceeecccHHHHHHHHhccccccCchhH--HHHHHHHHHHHHH------hhCcceEEEecCCccHHHHHH
Confidence 33333333333334444456677777665543211110 1111222233333 456789999999999999888
Q ss_pred HHHCCC----CeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---CCC---ceEEEecccccCCChhHHHHHH
Q 023384 137 SEAFPG----IKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---IPP---ADAFLFKLVFHGLGDEDGLKIL 198 (283)
Q Consensus 137 ~~~~p~----~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p~---~D~v~~~~vlh~~~d~~~~~iL 198 (283)
+.++-. ++++-+|+ ..+++...+ .-.+.-+++|+..+ +|. ==.+++.+.|.++++++|..+|
T Consensus 97 lda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl 176 (321)
T COG4301 97 LDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVFLGSTLGNLTPGECAVFL 176 (321)
T ss_pred HHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEEecccccCCChHHHHHHH
Confidence 888766 78999999 555443221 34456677888763 343 2355778899999999999999
Q ss_pred HHHHHhhccCCCCcEEEE-EeeecCC
Q 023384 199 KKRRAAIASNGERGKVII-IDIVINA 223 (283)
Q Consensus 199 ~~~~~~L~p~~~gg~lli-~d~~~~~ 223 (283)
.+++.+|+| |-.+++ +|...+.
T Consensus 177 ~~l~~a~~p---Gd~~LlGvDl~k~A 199 (321)
T COG4301 177 TQLRGALRP---GDYFLLGVDLRKPA 199 (321)
T ss_pred HHHHhcCCC---cceEEEeccccCHH
Confidence 999999999 455544 6665543
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=74.28 Aligned_cols=79 Identities=20% Similarity=0.399 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCCc
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPPA 177 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~ 177 (283)
...+++ ..+ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.+
T Consensus 18 ~~~iv~-~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~ 92 (258)
T PRK14896 18 VDRIVE-YAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEF 92 (258)
T ss_pred HHHHHH-hcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhc
Confidence 345555 444 556689999999999999999998 358999999 667665543 4689999999998 77788
Q ss_pred eEEEeccccc
Q 023384 178 DAFLFKLVFH 187 (283)
Q Consensus 178 D~v~~~~vlh 187 (283)
|.|+++-..+
T Consensus 93 d~Vv~NlPy~ 102 (258)
T PRK14896 93 NKVVSNLPYQ 102 (258)
T ss_pred eEEEEcCCcc
Confidence 9888766544
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=73.76 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=75.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p~~D~v~~~~ 184 (283)
.....+|||+|||+|..+..+++... ..+++.+|+ +..++.+++ ..++.++..|... + .+.||+|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45668999999999999999998875 468999999 777765543 3568889888765 2 23599998721
Q ss_pred ------ccc-------CCChhHH-------HHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 185 ------VFH-------GLGDEDG-------LKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 185 ------vlh-------~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
++. .|++++. .++|+++.+.||| ||+++.....+.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 221 2333322 4699999999999 788877665443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=78.76 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=75.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C-C-C-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F-I-P-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~-~-p-~~D~v~~~ 183 (283)
.....+|||+|||+|..+..+++.. +..+++.+|+ +..++.+++ ..+++++.+|..+ + . + .||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5566899999999999999999886 5679999999 777766654 2468899999876 3 2 2 49999872
Q ss_pred ---c---cccC-------CChh-------HHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 184 ---L---VFHG-------LGDE-------DGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 184 ---~---vlh~-------~~d~-------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
. +++. ++.+ .-.++|.++.+.|+| ||.++.....+.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence 2 2221 1211 126789999999999 788777665544
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-06 Score=63.74 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCccH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCC----CceEEEecccccCCCh
Q 023384 118 GLGSLVDVGGGNGS-LSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIP----PADAFLFKLVFHGLGD 191 (283)
Q Consensus 118 ~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p----~~D~v~~~~vlh~~~d 191 (283)
...+|||||||+|. ++..|.+. +.+++++|+ +..++.+++ ..+.++.+|.|++-+ ++|+|...+ ++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir-----pp 87 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----PP 87 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC-----CC
Confidence 34789999999996 77777765 679999999 777777764 457899999999533 589999876 55
Q ss_pred hHHHHHHHHHHHhhc
Q 023384 192 EDGLKILKKRRAAIA 206 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~ 206 (283)
.+...-+.++++...
T Consensus 88 ~el~~~~~~la~~~~ 102 (134)
T PRK04148 88 RDLQPFILELAKKIN 102 (134)
T ss_pred HHHHHHHHHHHHHcC
Confidence 666666666766655
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=73.96 Aligned_cols=90 Identities=17% Similarity=0.262 Sum_probs=62.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCCce
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPPAD 178 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~~D 178 (283)
..+++ ..+ ..+..+|||||||+|.++..++++.+ +++++|. +..++.+++ ..+++++.+|+.+ +++.+|
T Consensus 19 ~~i~~-~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 19 QKIVE-AAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHH-hcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 44555 444 55678999999999999999999986 4888888 666655543 4689999999998 666566
Q ss_pred --EEEecccccCCChhHHHHHHHHHHH
Q 023384 179 --AFLFKLVFHGLGDEDGLKILKKRRA 203 (283)
Q Consensus 179 --~v~~~~vlh~~~d~~~~~iL~~~~~ 203 (283)
.+++++.=++++. .++.++..
T Consensus 94 ~~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEEcCChhhHH----HHHHHHhc
Confidence 3333343333443 44555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-06 Score=65.03 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=90.6
Q ss_pred hhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-C--C
Q 023384 101 EILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-F--I 174 (283)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~--~ 174 (283)
...+..... ..+ +..+.-||++|.|||.++.+++++- +....+.++. ++-.....+ .+.++++.||.+. . .
T Consensus 34 s~lA~~M~s-~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 34 SILARKMAS-VID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHHHHh-ccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 344455555 555 6777899999999999999998874 5666788887 666665554 5677799999987 3 2
Q ss_pred ---C--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 175 ---P--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 175 ---p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+ .||.|++.--+-.++-....++|+.+...|++ ||.++.+...
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 2 39999999999999999999999999999998 7888777754
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.4e-07 Score=72.10 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=64.9
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEEcCC
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------------ADNLKYIAGDM 170 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~d~ 170 (283)
+++ .+. +.....++|||||.|......+..++--+.+++++ +...+.+.. ..++++..+||
T Consensus 34 il~-~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 34 ILD-ELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHH-HTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHH-HhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 344 444 66678999999999999998888776556999998 554433321 46788999999
Q ss_pred CC-CC-----CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 171 FQ-FI-----PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 171 ~~-~~-----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.+ +. ..+|+|++++.+ |+++- ..-|++....||+ |.+++-...+.+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~---G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKP---GARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCC---CCEEEECCCcCCCC
Confidence 98 42 358999999875 45554 4445777788998 67766655555443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.4e-06 Score=66.79 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=90.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-CCC-----CceEEEecccccCCCh-
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FIP-----PADAFLFKLVFHGLGD- 191 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p-----~~D~v~~~~vlh~~~d- 191 (283)
..++|||||=+...... .++-..++-+|+.+. . -.+...||++ |+| .||+|.++.||-..++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~------~--~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ------H--PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC------C--CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 36999999976654433 355667899998431 1 2246789999 876 2999999999999886
Q ss_pred hHHHHHHHHHHHhhccCCCCcE-----EEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 192 EDGLKILKKRRAAIASNGERGK-----VIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~-----lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
.+.-++|+++++.|+| +|. ++|+- |.. ...+.+..+.+.|.++++.-||..
T Consensus 121 ~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVl---P~~------------------Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKP---PGLSLFPSLFLVL---PLP------------------CVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred HHHHHHHHHHHHHhCC---CCccCcceEEEEe---Cch------------------HhhcccccCHHHHHHHHHhCCcEE
Confidence 4577899999999999 576 55543 111 124677779999999999999999
Q ss_pred eeEEEcCC
Q 023384 267 YKITPIFG 274 (283)
Q Consensus 267 ~~~~~~~~ 274 (283)
++....+-
T Consensus 177 ~~~~~~~K 184 (219)
T PF11968_consen 177 VKYKKSKK 184 (219)
T ss_pred EEEEecCe
Confidence 88766543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=74.30 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=56.8
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCCCc--
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIPPA-- 177 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p~~-- 177 (283)
..+++ .++ .....+|||||||+|.++..++++.+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++.+
T Consensus 32 ~~i~~-~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 106 (272)
T PRK00274 32 DKIVD-AAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP 106 (272)
T ss_pred HHHHH-hcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence 44455 444 55668999999999999999999975 8899999 777776654 3689999999998 65543
Q ss_pred eEEEec
Q 023384 178 DAFLFK 183 (283)
Q Consensus 178 D~v~~~ 183 (283)
+.++.+
T Consensus 107 ~~vv~N 112 (272)
T PRK00274 107 LKVVAN 112 (272)
T ss_pred ceEEEe
Confidence 555543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-06 Score=73.99 Aligned_cols=97 Identities=16% Similarity=0.217 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CCC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FIP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p-~~D~v~ 181 (283)
++.++||-||||.|..++++++..+--+++.+|+ +.+++.+++ .+|++++..|..+ ..+ +||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3447999999999999999999998889999999 889887775 3899999999887 234 499999
Q ss_pred ecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+-..=.. ... -....++.++++|++ +|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 8543210 110 125789999999999 5665554
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=76.26 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC---CC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF---IP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~v~ 181 (283)
++.++||.||||.|..+.++++..+..+++++|+ +++++.+++ .+|++++.+|..+- .+ .||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3557999999999999999998767778999999 888877764 47999999998872 22 499999
Q ss_pred ecccccCCCh--h---HHHHHHH-HHHHhhccCCCCcEEEE
Q 023384 182 FKLVFHGLGD--E---DGLKILK-KRRAAIASNGERGKVII 216 (283)
Q Consensus 182 ~~~vlh~~~d--~---~~~~iL~-~~~~~L~p~~~gg~lli 216 (283)
+-.. ..+.. . -....++ .+++.|+| ||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence 8531 11100 0 0246777 89999999 565544
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=71.79 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C-------CC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I-------PP 176 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~-------p~ 176 (283)
..+.++||+||.++|..++.+++..| +.+++.+|. ++..+.|++ .++|+++.||..+ + + .+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 45668999999999999999999874 779999999 776666654 6899999998876 2 1 35
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
||+|++-. ....-...++.+.+.|+| |.++|+|.++-.
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~----GGviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV----GGVIGYDNTLWN 194 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC----CeEEEEcCCCCC
Confidence 99999843 455567888999999999 666777866543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=79.99 Aligned_cols=122 Identities=21% Similarity=0.343 Sum_probs=74.7
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhh--cCCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI--FEGLGSLVDVGGGNGSLSRIISEAF----PGIKCTVLDL 150 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~ 150 (283)
..|+.+++|+..-..|.+++.. .+.+ ..... -.....|+|||||+|.++...+++. -..+++.++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D-~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEk 222 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKD-RVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEK 222 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHH-HHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEES
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHh-hhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 3467777777666666655432 2222 11100 0124689999999999998776654 4578999997
Q ss_pred -hHHHhcC------CC-CCCeEEEEcCCCC-CCC-CceEEEecccccCCC-hhHHHHHHHHHHHhhcc
Q 023384 151 -PHVVANL------PE-ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLG-DEDGLKILKKRRAAIAS 207 (283)
Q Consensus 151 -~~~~~~a------~~-~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~-d~~~~~iL~~~~~~L~p 207 (283)
+...... .. .++|+++.+|+.+ ..| .+|+++.-.. -.+. .+-....|....+.|||
T Consensus 223 n~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 223 NPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKP 289 (448)
T ss_dssp STHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEE
T ss_pred CHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCC
Confidence 5433221 11 6899999999999 667 5999977443 2222 34456678888899999
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=72.98 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=72.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHH-HhcCCC------------CCCeEEEEcCCCC-C----C---
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHV-VANLPE------------ADNLKYIAGDMFQ-F----I--- 174 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~-~~~a~~------------~~rv~~~~~d~~~-~----~--- 174 (283)
.+....++|+|||-|.-++..-++- --.++++|++++ ++++++ .-.+.|+++|.+. . +
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3566789999999999998877762 236899999665 666664 1246789998876 2 2
Q ss_pred -CCceEEEecccccC-CC-hhHHHHHHHHHHHhhccCCCCcEE
Q 023384 175 -PPADAFLFKLVFHG-LG-DEDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 175 -p~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
|.||+|-+..++|. |. .+.+...|+++.+.|+| ||.+
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~F 233 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVF 233 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEE
Confidence 34999999999996 44 46678889999999999 5543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=69.62 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC---C-CceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI---P-PADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~---p-~~D~v~~~~vl 186 (283)
...+|||+|||+|.++.+++.+.. .+++++|. ++.++.+++ ..+++++.+|+++.+ . .||+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 347999999999999997666653 68999999 777665543 357999999987722 2 49999986554
Q ss_pred cCCChhHHHHHHHHHHHh--hccCCCCcEEEEEeeec
Q 023384 187 HGLGDEDGLKILKKRRAA--IASNGERGKVIIIDIVI 221 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~--L~p~~~gg~lli~d~~~ 221 (283)
+. .....+++.+.+. |+| +.+++++...
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLAD----EALIYVESEV 161 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence 32 1122344444443 677 5566777543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.7e-06 Score=66.50 Aligned_cols=124 Identities=19% Similarity=0.269 Sum_probs=86.4
Q ss_pred EEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--C-ceEEEecccccCCC
Q 023384 122 LVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP--P-ADAFLFKLVFHGLG 190 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p--~-~D~v~~~~vlh~~~ 190 (283)
|.||||-+|.+.+.|++....-+++..|+ +.-++.|++ .+++++..+|-++.++ . .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988889999999 777776654 6899999999988554 3 788877664 5
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
-....+||.+....++. ..-+|+.+.. ....+++||.+.||.+.+-.
T Consensus 77 G~lI~~ILe~~~~~~~~----~~~lILqP~~-----------------------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS----AKRLILQPNT-----------------------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGTT------EEEEEESS------------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhcc----CCeEEEeCCC-----------------------------ChHHHHHHHHHCCCEEEEeE
Confidence 66678888887777665 3234433211 35678999999999998643
Q ss_pred Ec--CC-cceEEEEe
Q 023384 271 PI--FG-MRFLIEIY 282 (283)
Q Consensus 271 ~~--~~-~~~~i~~~ 282 (283)
-. .+ +.-||.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 33 33 45666654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=72.30 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=77.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d 191 (283)
.+....++|+|||.|.+.. .+|.+-.+++|+ ...+..+++.+.......|+.. |.+ .+|..+...++|||+.
T Consensus 43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT 118 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLST 118 (293)
T ss_pred cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence 4457889999999998875 358889999999 6666777664443677788888 765 4999999999999975
Q ss_pred -hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 192 -EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 192 -~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
....++++++.+.++| ||..+|.-.
T Consensus 119 ~~RR~~~l~e~~r~lrp---gg~~lvyvw 144 (293)
T KOG1331|consen 119 RERRERALEELLRVLRP---GGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHHHhcC---CCceEEEEe
Confidence 4467889999999999 788777654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-06 Score=69.92 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=66.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC-CCCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF-IPPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~-~p~~D~v~~~ 183 (283)
-++.++||=||||.|..++++++. |. +++.+|+ +++++.+++ .+|++++.. +.+. ...||+|++-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 356699999999999999999986 54 9999999 888877664 678888762 2222 2359999986
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.. .+ ....+.++++|+| ||.++.
T Consensus 147 s~----~~---~~fy~~~~~~L~~---~Gi~v~ 169 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLKE---DGVFIS 169 (262)
T ss_pred CC----CC---hHHHHHHHHhcCC---CcEEEE
Confidence 43 22 3667999999999 465444
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-06 Score=71.63 Aligned_cols=88 Identities=22% Similarity=0.384 Sum_probs=63.8
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p 175 (283)
..+++ ... .....+|||||||+|.++..+++.. .+++++|+ +..++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~Iv~-~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 26 DKIVE-KAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHH-hcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 44555 444 5566899999999999999999874 46899998 777665543 3689999999998 677
Q ss_pred CceEEEecccccCCChhHHHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKIL 198 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL 198 (283)
.+|+++.+- =++++.+-..++|
T Consensus 101 ~~d~VvaNl-PY~Istpil~~ll 122 (294)
T PTZ00338 101 YFDVCVANV-PYQISSPLVFKLL 122 (294)
T ss_pred ccCEEEecC-CcccCcHHHHHHH
Confidence 789877643 3345554444444
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5e-06 Score=70.70 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=69.3
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCCC-ceEEEecccccCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIPP-ADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~~ 190 (283)
+-|||||||+|.++...+++. .-++..++-.++.+.|++ .+||.++.|.+.+ ++|. .|++|.--.=..+-
T Consensus 179 kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~ 257 (517)
T KOG1500|consen 179 KIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLV 257 (517)
T ss_pred cEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhh
Confidence 789999999999998777663 346888888887776664 7999999999999 8885 99998754333334
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
++....-.-..++.|+| .|+++
T Consensus 258 NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 258 NERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hHHHHHHHHHHHhhcCC---CCccc
Confidence 55444444557799999 57664
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.2e-05 Score=68.64 Aligned_cols=101 Identities=18% Similarity=0.305 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC----CCCeEE--EEcCCCC---CCCCceEEEeccccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGI-KCTVLDL-PHVVANLPE----ADNLKY--IAGDMFQ---FIPPADAFLFKLVFH 187 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~rv~~--~~~d~~~---~~p~~D~v~~~~vlh 187 (283)
..+|||+|+|.|..+-+....++.. +++.+|. +.+++.++. ...... ...++.. +++..|+|+++++|-
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L~ 113 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVLN 113 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhhh
Confidence 4799999999999999888888854 5889998 666655443 111110 1112221 334579999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.++++...++++++.+.+. +.++|+|+-.+..
T Consensus 114 EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~G 145 (274)
T PF09243_consen 114 ELPSAARAELVRSLWNKTA-----PVLVLVEPGTPAG 145 (274)
T ss_pred cCCchHHHHHHHHHHHhcc-----CcEEEEcCCChHH
Confidence 9999777788888777665 4889999766543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8e-06 Score=64.24 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=56.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCCCceEEEecccccCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIPPADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~ 189 (283)
..++|+|+|||||.+++..+...| .+++++|+ |+.++.+++ ..++.|+..|..+.-..+|.++++=-+--+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~ 121 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQ 121 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccc
Confidence 457899999999999998776644 48999999 888887765 568999999998754568888886555433
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-06 Score=70.75 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=67.5
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-CeEEEEcCCCC--C--CC--CceEEEecccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----AD-NLKYIAGDMFQ--F--IP--PADAFLFKLVF 186 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-rv~~~~~d~~~--~--~p--~~D~v~~~~vl 186 (283)
..+||||||.|.+...+|+++|+..++++++ ...+..+.+ .- ++.++++|..+ + ++ +-|-|.+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 5899999999999999999999999999998 555443332 33 89999998876 2 22 24555442
Q ss_pred cCCChh-----------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGDE-----------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d~-----------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|||+ -....|+.+.+.|+| ||.+.+..
T Consensus 127 --FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 127 --FPDPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred --CCCCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 3332 124689999999999 78887654
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=65.56 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhc-CCCCCCeE-EEEcCCCC--------CCCCceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVAN-LPEADNLK-YIAGDMFQ--------FIPPADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~rv~-~~~~d~~~--------~~p~~D~v~~~~vl 186 (283)
...++||+|||+|.++..+++. +..+++++|. +.++.. .++..++. +...|+.. +++.+|+.+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 4578999999999999999986 4568999999 545543 44445543 23334332 1224787777654
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCcc-------CCHHHHHHHH
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE-------RTESEWAKLF 259 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~t~~e~~~ll 259 (283)
.+|..+.++|+| |-.++++-+-+.-.... .+ -+|-. .-.+++..++
T Consensus 153 ---------~~l~~i~~~l~~---~~~~~L~KPqFE~~~~~---------~~------~~giv~~~~~~~~~~~~~~~~~ 205 (228)
T TIGR00478 153 ---------SILPELDLLLNP---NDLTLLFKPQFEAGREK---------KN------KKGVVRDKEAIALALHKVIDKG 205 (228)
T ss_pred ---------hHHHHHHHHhCc---CeEEEEcChHhhhcHhh---------cC------cCCeecCHHHHHHHHHHHHHHH
Confidence 358889999998 44555554333211100 00 11222 2356777888
Q ss_pred HHCCCCeeeEEEcC
Q 023384 260 FDACFSHYKITPIF 273 (283)
Q Consensus 260 ~~aGf~~~~~~~~~ 273 (283)
.+.||++..+.+.+
T Consensus 206 ~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 206 ESPDFQEKKIIFSL 219 (228)
T ss_pred HcCCCeEeeEEECC
Confidence 88999998887764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=8e-06 Score=65.09 Aligned_cols=99 Identities=18% Similarity=0.304 Sum_probs=72.4
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC----------------CCCeEEEE
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE----------------ADNLKYIA 167 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~ 167 (283)
+++ .++..+....+.||||+|+|.++..++... +....+++|. |+.++.+++ ..++.++.
T Consensus 72 ~le-~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 72 ALE-YLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHH-HHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence 444 444446778999999999999999888543 3333488898 888765543 46788999
Q ss_pred cCCCC-C--CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 168 GDMFQ-F--IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 168 ~d~~~-~--~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
||... . ...||.|.+... +.++.++...-|+| ||+++|-
T Consensus 151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred CCccccCCccCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEEe
Confidence 99988 2 235999988632 34667788888999 7988873
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.6e-06 Score=78.81 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=70.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEEcCCCCC---CC-CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------A-DNLKYIAGDMFQF---IP-PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~rv~~~~~d~~~~---~p-~~D~v~~ 182 (283)
.....+|||+|||+|.++..+++. ...+++.+|+ +.+++.+++ . ++++++.+|.++. .+ .||+|++
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 334589999999999999999986 3447999999 777877664 2 5899999998872 23 5999998
Q ss_pred ccccc--------CC-ChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 183 KLVFH--------GL-GDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 183 ~~vlh--------~~-~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.=--. .+ ....-..+++.+.+.|+| ||.+++.
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 42110 00 112345788899999999 6766543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.7e-06 Score=69.46 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=72.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---C-CC-CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---F-IP-PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~-~p-~~D~v 180 (283)
++.++||=||+|.|..+.++++..+-.+++++|+ |.+++.+++ .+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4679999999999999999998766778999999 888887764 4799999999866 2 23 59999
Q ss_pred EecccccCCChh--HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 181 LFKLVFHGLGDE--DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 181 ~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++-..--..+.. -....++.++++|+| +|.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 984432111111 135889999999999 56555443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-05 Score=70.60 Aligned_cols=64 Identities=20% Similarity=0.208 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~ 183 (283)
...+|||+|||+|.++..+++. ..+++++|+ +++++.+++ ..+++|+.+|+.+ . .. .||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3489999999999999999984 568999999 888877664 3579999999976 2 22 48999885
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.7e-05 Score=71.08 Aligned_cols=99 Identities=7% Similarity=0.060 Sum_probs=68.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEEcCCCCCC------C-CceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------A-DNLKYIAGDMFQFI------P-PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~rv~~~~~d~~~~~------p-~~D~ 179 (283)
+....+|||+|||+|.++...+.. ...+++.+|+ +..++.+++ . ++++++.+|+++.. . .||+
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 345689999999999998876543 3458999999 777776654 2 47899999998721 2 4999
Q ss_pred EEecccccCCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 180 FLFKLVFHGLGD-------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 180 v~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|++.-.-..-+. ..-..+++.+.+.|+| ||.++...
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s 339 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS 339 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 998533211111 1234556678899999 67766644
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1e-05 Score=65.37 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=90.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC--CeEEEEcCCCC-CCC--CceEEEecccccC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--AD--NLKYIAGDMFQ-FIP--PADAFLFKLVFHG 188 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--rv~~~~~d~~~-~~p--~~D~v~~~~vlh~ 188 (283)
+....++|||||.|+....+.... --+.+..|. ..+++.++. .. .+....+|-.. ++. ++|+++.+..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 456789999999999999999885 336788898 677776664 22 33455666555 554 4999999999986
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCcc-----C-CHHHHHHHHHHC
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE-----R-TESEWAKLFFDA 262 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-t~~e~~~ll~~a 262 (283)
.+| ...-+.+|+.+||| .| ++|...+-.+.- ++.....-+.-+-..||-. + ...++-.+|..|
T Consensus 150 ~Nd--LPg~m~~ck~~lKP---Dg-~FiasmlggdTL-----yELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 150 TND--LPGSMIQCKLALKP---DG-LFIASMLGGDTL-----YELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hcc--CchHHHHHHHhcCC---Cc-cchhHHhccccH-----HHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 555 34667899999999 34 344443333321 1111111111111122211 1 246788999999
Q ss_pred CCCeeeE
Q 023384 263 CFSHYKI 269 (283)
Q Consensus 263 Gf~~~~~ 269 (283)
||....+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9987654
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=71.93 Aligned_cols=84 Identities=15% Similarity=0.282 Sum_probs=60.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC-----C-C-CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF-----I-P-PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-----~-p-~~D~v~ 181 (283)
..+..+|||+|||+|.++..+++.. .+++++|+ +++++.+++ ..+++|+.+|+.+. . . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4556799999999999999999874 47999999 888877764 35899999998651 1 1 389998
Q ss_pred ecccccCCChhH-HHHHHHHHHHhhcc
Q 023384 182 FKLVFHGLGDED-GLKILKKRRAAIAS 207 (283)
Q Consensus 182 ~~~vlh~~~d~~-~~~iL~~~~~~L~p 207 (283)
+.- +... ...+++.+. .++|
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~-~l~~ 388 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTII-ELKP 388 (431)
T ss_pred ECc-----CCCCCCHHHHHHHH-hcCC
Confidence 732 2111 235555544 3777
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=62.73 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=67.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHH---hcCCC---CCCeEEEEcCCCC-CCC-CceEEEecccccCCCh
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV---ANLPE---ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLGD 191 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~---~~a~~---~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d 191 (283)
+++|||+|.|.-++.++-.+|+.+++.+|. ..-+ +.+.. -++++++.+...+ ..+ .||+++++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999997 3322 22221 5689999998888 333 599999988742
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...+++-+...+++ ||+++..-
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEc
Confidence 34778888889999 78877754
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.7e-05 Score=63.92 Aligned_cols=96 Identities=11% Similarity=0.101 Sum_probs=64.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C--C-C-ceEEEe
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I--P-P-ADAFLF 182 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~--p-~-~D~v~~ 182 (283)
...++||++||+|.++.+++.+... +++.+|. +..++.+++ .++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3479999999999999999998653 7999998 666655543 35789999999652 1 1 2 677777
Q ss_pred cccccCCChhHHHHHHHHHHH--hhccCCCCcEEEEEeeec
Q 023384 183 KLVFHGLGDEDGLKILKKRRA--AIASNGERGKVIIIDIVI 221 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~d~~~ 221 (283)
-=.... .....+++.+.+ .|++ +.++|+|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 443322 112344444433 4665 5677777543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=64.95 Aligned_cols=75 Identities=25% Similarity=0.499 Sum_probs=60.3
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI 174 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~ 174 (283)
.+.+++ .-+ ......||+||.|||.++..++++ ..+++.+++ |.++...++ +...+++.||+++ +.
T Consensus 47 ~~~I~~-ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 47 IDQIVE-KAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHh-ccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 344555 444 777889999999999999999998 667888888 777665543 5789999999999 88
Q ss_pred CCceEEEec
Q 023384 175 PPADAFLFK 183 (283)
Q Consensus 175 p~~D~v~~~ 183 (283)
|-||+++..
T Consensus 122 P~fd~cVsN 130 (315)
T KOG0820|consen 122 PRFDGCVSN 130 (315)
T ss_pred cccceeecc
Confidence 989988873
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0006 Score=53.38 Aligned_cols=68 Identities=16% Similarity=0.358 Sum_probs=52.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCC--CCceEEEecccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFI--PPADAFLFKLVF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~--p~~D~v~~~~vl 186 (283)
..-++|||||+|..+..+++.. |+..+...|+ |+.++...+ ..++..+..|+.+.+ .+.|+.+++--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCc
Confidence 5789999999999999988864 8888999999 887766443 456778888888833 358888876543
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=67.99 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
..+.|||||||+|.+++.-+++. ..++.++|-.++++.+.+ .+.|+++.|.+.+ .+| ..|+|+.-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 34899999999999999888886 568999998777766554 6779999999888 555 599997755333
Q ss_pred CC-ChhHHHHHHHHHHHhhccCCCCcEE
Q 023384 188 GL-GDEDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 188 ~~-~d~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
.+ -+...-.+|-.=-+.|+| ||.+
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i 163 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLI 163 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceE
Confidence 22 132333444444467998 5644
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.1e-05 Score=68.39 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC---C-CCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF---I-PPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~-p~~D~v~~~ 183 (283)
...+|||++||+|.++..++.. ..+++++|+ +..++.+++ .++++|+.+|+.+. . ..+|+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3479999999999999999864 468999999 888776654 34799999998662 2 248998884
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.6e-05 Score=71.34 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-CC-----CCCeEEEEcCCCC---CCC--CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL-PE-----ADNLKYIAGDMFQ---FIP--PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~-----~~rv~~~~~d~~~---~~p--~~D~v~~~~v 185 (283)
....+||||||.|.++..+++++|+..++++|+ ...+..+ ++ ..++.++.+|+.. .++ +.|-+++...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999998 4433322 21 4678888887642 344 2676666332
Q ss_pred ccCCChh-------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 186 FHGLGDE-------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 186 lh~~~d~-------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
= =|+.. -....|+.+++.|+| ||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 1 12111 135789999999999 78887654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.1e-05 Score=65.60 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=58.8
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-C--CC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-F--IP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~--~p 175 (283)
..+++ .+. ..+...+||.+||.|..+..+++.+| +.+++++|. |++++.+++ .+|++++.+||.+ . .+
T Consensus 9 ~Evl~-~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 9 DEVVD-ALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHH-hhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 45566 554 45567999999999999999999996 789999999 888887765 3589999998876 2 21
Q ss_pred ----CceEEEe
Q 023384 176 ----PADAFLF 182 (283)
Q Consensus 176 ----~~D~v~~ 182 (283)
.+|.|++
T Consensus 86 ~~~~~vDgIl~ 96 (296)
T PRK00050 86 EGLGKVDGILL 96 (296)
T ss_pred cCCCccCEEEE
Confidence 4777766
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.2e-05 Score=62.97 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=50.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEE----cCCCCCCC----CceEEEe
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIA----GDMFQFIP----PADAFLF 182 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~----~d~~~~~p----~~D~v~~ 182 (283)
...|||+|||+|..+..++...|+++++.+|. +.++..|.+ .+++.++. .|.+.+.+ ..|++++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 35799999999999999999999999999999 555554443 78888874 45554332 3788776
Q ss_pred c
Q 023384 183 K 183 (283)
Q Consensus 183 ~ 183 (283)
+
T Consensus 229 N 229 (328)
T KOG2904|consen 229 N 229 (328)
T ss_pred C
Confidence 4
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.4e-05 Score=62.28 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCC---------------------C-------------CC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLP---------------------E-------------AD 161 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~---------------------~-------------~~ 161 (283)
...++||||+|.-.+. ++.+.+..+ ++..|. +...+..+ + ..
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3468999999986653 333334443 677776 43332111 0 12
Q ss_pred CeE-EEEcCCCC--CC------CC-ceEEEecccccCCC--hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh
Q 023384 162 NLK-YIAGDMFQ--FI------PP-ADAFLFKLVFHGLG--DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE 229 (283)
Q Consensus 162 rv~-~~~~d~~~--~~------p~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~ 229 (283)
.|+ ++..|.++ |+ |. +|++++..+|.--. .++-.+.++++.++||| ||.++++...- ...-.
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~-~t~Y~-- 207 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLG-STYYM-- 207 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS--SEEE--
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcC-ceeEE--
Confidence 243 67788887 22 33 99999999887543 35678889999999999 77777766533 22100
Q ss_pred hhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc---CCc--ceEEEEeC
Q 023384 230 LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI---FGM--RFLIEIYP 283 (283)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~---~~~--~~~i~~~~ 283 (283)
. .-..+ ..-..+.+.+++.|+++||.+.+.... ... ...+.|+|
T Consensus 208 ---v-G~~~F------~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 208 ---V-GGHKF------PCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp ---E-TTEEE------E---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred ---E-CCEec------ccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 0 00001 122347899999999999998887641 112 34566665
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00053 Score=57.90 Aligned_cols=134 Identities=16% Similarity=0.122 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechH-H-------Hhc---CC----------------------------
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPH-V-------VAN---LP---------------------------- 158 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~-------~~~---a~---------------------------- 158 (283)
...+||--|||-|.++-++++. +-.+.+.+..- + +.. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999998 44455555421 1 111 00
Q ss_pred --------CCCCeEEEEcCCCC--CCC----CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 159 --------EADNLKYIAGDMFQ--FIP----PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 159 --------~~~rv~~~~~d~~~--~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
...++....|||.+ +.+ .+|+|+.+..+. +-+.....|+.|.+.||| ||..+=+-+.+-..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCccccC
Confidence 03567889999998 333 499999987775 345578999999999999 56333233333222
Q ss_pred ccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 225 EEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
... . ......-+.+.+|+.++.++.||++++-..
T Consensus 209 ~~~------------~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 EPM------------S-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCC------------C-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 110 0 000123577999999999999999986544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.3e-05 Score=72.00 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEe---ec-hHHHhcCCCCCCeEEEEcCCCC---CCCC--ceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVL---DL-PHVVANLPEADNLKYIAGDMFQ---FIPP--ADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~rv~~~~~d~~~---~~p~--~D~v~~~~vlh~ 188 (283)
....+||||||+|.++..|+++ ++..+.+ |. +..+..|.+ ..+.-+-+-+.+ |+|. ||+|.+++++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhccccccc
Confidence 3467999999999999999987 4433222 22 222333322 113323233322 6664 999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
|...+ ..+|-++-|+|+| ||.+++..+-.
T Consensus 194 W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv 222 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRP---GGYFVLSGPPV 222 (506)
T ss_pred chhcc-cceeehhhhhhcc---CceEEecCCcc
Confidence 98876 3588899999999 77766655433
|
; GO: 0008168 methyltransferase activity |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=56.35 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=59.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCC-C-CCCceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA----FPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-F-IPPADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~-~p~~D~ 179 (283)
..+..+|+|+|||.|+++..++.. .|+.+++++|. +..++.+.+ ..++.+..+++.+ . ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356689999999999999999982 28899999998 665555442 3567777776665 2 224678
Q ss_pred EEecccccCCChhHHHHHHHHHHH
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRA 203 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~ 203 (283)
++.-|.--++++ .+|+...+
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEEeecccchHH----HHHHHHHH
Confidence 777666555555 45555554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=59.49 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=83.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHH---HhcCCC---CCCeEEEEcCCCC-C-CCC-ceEEEecccccC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHV---VANLPE---ADNLKYIAGDMFQ-F-IPP-ADAFLFKLVFHG 188 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~rv~~~~~d~~~-~-~p~-~D~v~~~~vlh~ 188 (283)
..+++|||.|.|.-++-++-.+|+++++.+|. ..- ++.+.+ -++++++.+...+ . .+. ||+|+++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999999999999999999999997 322 333332 5779999998887 3 335 99999987631
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
...++.-+...+++ ||+++..-... ++. -..+.+.....-|+.+.+
T Consensus 147 -----L~~l~e~~~pllk~---~g~~~~~k~~~-------------------------~~~-e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 147 -----LNVLLELCLPLLKV---GGGFLAYKGLA-------------------------GKD-ELPEAEKAILPLGGQVEK 192 (215)
T ss_pred -----hHHHHHHHHHhccc---CCcchhhhHHh-------------------------hhh-hHHHHHHHHHhhcCcEEE
Confidence 34556667777887 56654321100 111 134556677777888888
Q ss_pred EEEc
Q 023384 269 ITPI 272 (283)
Q Consensus 269 ~~~~ 272 (283)
+...
T Consensus 193 ~~~~ 196 (215)
T COG0357 193 VFSL 196 (215)
T ss_pred EEEe
Confidence 7665
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=64.80 Aligned_cols=90 Identities=18% Similarity=0.137 Sum_probs=67.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C-CCCceEEEecccccC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F-IPPADAFLFKLVFHG 188 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~p~~D~v~~~~vlh~ 188 (283)
..+|||++||+|..++.+++..+..++++.|+ +..++.+++ .+.+++..+|..+ . .+.||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 36899999999999999999887668999999 877776654 3456688888865 2 23599998832 2
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.. ...+|..+.+.+++ ||.+.|.
T Consensus 135 -Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 11 23667887788898 6777776
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00049 Score=56.03 Aligned_cols=127 Identities=15% Similarity=0.089 Sum_probs=88.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC---CCC--CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ---FIP--PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~---~~p--~~D~v~ 181 (283)
.+...+|||.-.|-|..+++-+++- .++++-++- |.+++.|+- ..+++++.||..+ +++ +||+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999988873 237777777 888877763 4578999999987 355 388865
Q ss_pred ecccccCCC------hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 182 FKLVFHGLG------DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 182 ~~~vlh~~~------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
||-+ .--...+-+++++.|+| ||+++-.-- .+.. .+. |+. -+..+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG---~Pg~--------ryr---------G~d-~~~gV 261 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVG---NPGK--------RYR---------GLD-LPKGV 261 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeC---CCCc--------ccc---------cCC-hhHHH
Confidence 4432 22356789999999999 788764321 1110 011 111 25678
Q ss_pred HHHHHHCCCCeeeEEEc
Q 023384 256 AKLFFDACFSHYKITPI 272 (283)
Q Consensus 256 ~~ll~~aGf~~~~~~~~ 272 (283)
.+.|+++||.+++....
T Consensus 262 a~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 262 AERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHHhcCceeeeeehh
Confidence 89999999998876554
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00086 Score=53.08 Aligned_cols=138 Identities=16% Similarity=0.077 Sum_probs=85.6
Q ss_pred hcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhc-----------CCC--CCCeEEEEcCCCC-CCC-Cce
Q 023384 115 IFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVAN-----------LPE--ADNLKYIAGDMFQ-FIP-PAD 178 (283)
Q Consensus 115 ~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~-----------a~~--~~rv~~~~~d~~~-~~p-~~D 178 (283)
+++...+|+|+=.|.|.++..+.... |.-.++.+--.+...- +++ ..+++.+..+... ..| +.|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37788999999999999999887764 4444443322222111 111 3445555555444 333 367
Q ss_pred EEEecccccCC-----ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHH
Q 023384 179 AFLFKLVFHGL-----GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 253 (283)
Q Consensus 179 ~v~~~~vlh~~-----~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 253 (283)
+++..+.-|++ ....+.++-+.++++||| ||.++|.|.......... .... -..++..
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~~-----------~~ri~~a 187 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTIT-----------LHRIDPA 187 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhhh-----------hcccChH
Confidence 77664444433 245678899999999999 788888887765433221 1110 1123567
Q ss_pred HHHHHHHHCCCCeeeE
Q 023384 254 EWAKLFFDACFSHYKI 269 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~ 269 (283)
-..+..+++||+..--
T Consensus 188 ~V~a~veaaGFkl~ae 203 (238)
T COG4798 188 VVIAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHHHhhcceeeee
Confidence 7888999999987643
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00056 Score=57.30 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCC----CCCCeEEEEcCCCC-CCCC--
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLP----EADNLKYIAGDMFQ-FIPP-- 176 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~----~~~rv~~~~~d~~~-~~p~-- 176 (283)
.+.+++ ..+ ......|||||+|.|.++..|+++...+.++-+| +..++..+ ..++++++.+|+.+ ++++
T Consensus 19 ~~kIv~-~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVE-AAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHH-hcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 456666 544 5557899999999999999999996654444444 43333332 36899999999999 8873
Q ss_pred -ceEEEe
Q 023384 177 -ADAFLF 182 (283)
Q Consensus 177 -~D~v~~ 182 (283)
++.++.
T Consensus 95 ~~~~vVa 101 (259)
T COG0030 95 QPYKVVA 101 (259)
T ss_pred CCCEEEE
Confidence 455444
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=56.52 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=73.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCCCceEEEecccccCCCh
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGD 191 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d 191 (283)
..+.|+|.|+|.++...+++ .-+++.++. |...+.+.+ ..+++++.+|..+ ++.++|+|++-..=-.+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 68999999999999876665 557888888 777666665 5789999999999 8878999988654333445
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
++-+.+++.+.+-|+- .++++=.+.
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccHHH
Confidence 6668889999999997 477665443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00075 Score=58.46 Aligned_cols=92 Identities=22% Similarity=0.435 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------------CCCeEEEEcCCCCCC----CCc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-------------ADNLKYIAGDMFQFI----PPA 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~~~----p~~ 177 (283)
++..++|-+|||.|..++++++ +|+ -+++.+|+ |.+++.++. ..|++++.-|.++-. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5668999999999999999875 685 46899999 999988773 689999999998822 249
Q ss_pred eEEEecccccCCChhH--------HHHHHHHHHHhhccCCCCcEEEEE
Q 023384 178 DAFLFKLVFHGLGDED--------GLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~--------~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
|++|. |++|+. ...+-+-+++.|++ +|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 99887 455543 34556777888998 5766654
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00038 Score=61.72 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=42.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 172 (283)
.+|||++||+|.++..+++... +++++|. +++++.+++ .++++|+.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999999 888877765 3478999999865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0076 Score=52.44 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=72.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCC--C-CceEEEecccccCCChh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFI--P-PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~--p-~~D~v~~~~vlh~~~d~ 192 (283)
+....++|||||++|.++..++++ +.+++.+|...+.......++|+...+|-+... + .+|++++-.+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 356789999999999999999998 569999998666555555789999999998833 2 489998866642 2
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.++++-+.+.|.. + -.+-.|+..-++-.
T Consensus 283 --~rva~lm~~Wl~~-g-~cr~aIfnLKlpmk 310 (357)
T PRK11760 283 --ARVAELMAQWLVN-G-WCREAIFNLKLPMK 310 (357)
T ss_pred --HHHHHHHHHHHhc-C-cccEEEEEEEcCCC
Confidence 2666777777775 1 13456666555433
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0043 Score=51.77 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=81.5
Q ss_pred HHHHhhhhhhhh----HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHH-HhcCCC------
Q 023384 92 FNEAMASDTEIL----TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHV-VANLPE------ 159 (283)
Q Consensus 92 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~-~~~a~~------ 159 (283)
|-..|-..++.+ ...|+. .++ ...+.+|++-|.|+|.++.+++++. |.-+..-+|..+. .+.|.+
T Consensus 78 WTl~LphRTQI~Yt~Dia~I~~-~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg 154 (314)
T KOG2915|consen 78 WTLALPHRTQILYTPDIAMILS-MLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG 154 (314)
T ss_pred hhhhccCcceEEecccHHHHHH-Hhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC
Confidence 444455444322 344555 666 7888999999999999999999985 8888999998333 333332
Q ss_pred -CCCeEEEEcCCCC-CCC----CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 160 -ADNLKYIAGDMFQ-FIP----PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 160 -~~rv~~~~~d~~~-~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.+++++...|... -++ .+|.|++ |++.+. ..+-.++++||. + ||++.-+.+++
T Consensus 155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~-~-g~r~csFSPCI 213 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKD-E-GGRLCSFSPCI 213 (314)
T ss_pred CCcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhh-c-CceEEeccHHH
Confidence 7899999999887 333 3899988 555543 335566668886 3 66776666554
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0009 Score=56.83 Aligned_cols=97 Identities=16% Similarity=0.245 Sum_probs=65.4
Q ss_pred hhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC
Q 023384 102 ILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p 175 (283)
..++.+++ ..+ ......|||||+|.|.++..|++.. .++++++. +...+..++ .++++++.+|+.+ +.+
T Consensus 17 ~~~~~Iv~-~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 17 NIADKIVD-ALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHH-HHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHH-hcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccH
Confidence 34566666 665 6677999999999999999999997 67888887 555444332 6899999999998 544
Q ss_pred C----ceEEEecccccCCChhHHHHHHHHHHHhhcc
Q 023384 176 P----ADAFLFKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 176 ~----~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
. -.+.+..+.=+ .-...++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlPy----~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLPY----NISSPILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEETG----TGHHHHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEecc----cchHHHHHHHhhcccc
Confidence 3 23334433322 2334667777664443
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0002 Score=53.80 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC--C-ceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP--P-ADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p--~-~D~v~~~~vlh 187 (283)
.++.+.|+|||.|-++. +-.+|. -.++++|+ |+.++...+ .-.+.+.+.|+.++.+ . ||..++.--+.
T Consensus 48 Egkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCC
Confidence 45899999999999994 444454 45889999 998887664 4456888899988433 3 89998877654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00039 Score=56.30 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC-C-CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI-P-PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~-p-~~D~v~~~~v 185 (283)
......|+|.-||.|.+++.+++..+..+++..|+ |..++..++ .+++..+.+|..+-. . .+|-|+|...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45678999999999999999999778889999999 877655443 678999999998732 3 4998888553
Q ss_pred ccCCChhHHHHHHHHHHHhhcc
Q 023384 186 FHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p 207 (283)
- .+...|..+.+.+++
T Consensus 179 ~------~~~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 179 E------SSLEFLDAALSLLKE 194 (200)
T ss_dssp S------SGGGGHHHHHHHEEE
T ss_pred H------HHHHHHHHHHHHhcC
Confidence 2 234678888889998
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=50.93 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=71.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCCCceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIPPADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~ 189 (283)
.-..++|||+|.|+|..+++-+++- ...++..|+ |..+..+.- .-.+.+...|..-+-+.+|+++...++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4456899999999999999877763 234566666 444333321 456677777776644569999999999865
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+. +.+++. ....|+.. |..++|.|+..+.-
T Consensus 156 ~~--a~~l~~-~~~~l~~~--g~~vlvgdp~R~~l 185 (218)
T COG3897 156 TE--ADRLIP-WKDRLAEA--GAAVLVGDPGRAYL 185 (218)
T ss_pred hH--HHHHHH-HHHHHHhC--CCEEEEeCCCCCCC
Confidence 54 447777 66666652 67888877665543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00093 Score=56.63 Aligned_cols=95 Identities=16% Similarity=0.325 Sum_probs=55.7
Q ss_pred CCeEEEEcCCccHHHHH-HHHH-CCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC-C--CCCceEEEecc
Q 023384 119 LGSLVDVGGGNGSLSRI-ISEA-FPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ-F--IPPADAFLFKL 184 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~--~p~~D~v~~~~ 184 (283)
.++|+=||||.=-++.- +++. .++..++++|+ |+..+.+++ +.+++|+++|..+ + +..||+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 36999999996655554 4444 36788999999 777766543 7899999999976 3 44699999877
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
..- .+.++..+||+++.+.|+| |.++++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 653 3344557999999999999 5666554
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.005 Score=52.43 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=89.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-----h-HHHhc-------------------------CC--------C
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-----P-HVVAN-------------------------LP--------E 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~-~~~~~-------------------------a~--------~ 159 (283)
..+||--|||.|.++..|+...+.+++--+.. . -++.. .+ .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 56899999999999999999987776531110 0 00100 00 0
Q ss_pred ------CCCeEEEEcCCCC--CCC----CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc
Q 023384 160 ------ADNLKYIAGDMFQ--FIP----PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE 227 (283)
Q Consensus 160 ------~~rv~~~~~d~~~--~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~ 227 (283)
.+..+...|||.+ +.+ .+|+|+.+..+. +-......|..|.+.|+| ||..+=+-+.+-.....
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccCC
Confidence 2334557799988 333 299999887664 445578889999999999 56555455554433221
Q ss_pred hhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 228 HELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
+ + .-...+-+.+.+++..+.+.-||++.+-..
T Consensus 306 ~---------g---~~~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 306 H---------G---VENEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred C---------C---CcccccccccHHHHHHHHHhcCcEEEEeee
Confidence 1 0 001125577999999999999999887543
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00052 Score=61.05 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=42.4
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ 172 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 172 (283)
.+|||++||+|.++..+++... +++++|. +.+++.+++ .++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988753 7999999 777776654 3478999999865
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=52.34 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=74.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC---------CCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI---------PPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~---------p~~ 177 (283)
+-+.++.||||.=||..+.+++.+.|. -+++.+|+ ++..+.+.+ ...|+++.++..+.+ .+|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 445689999999999999999999975 67899998 444443332 688999999887732 138
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
|.+++- +|-+. ......++.+.+++ |.++++|.++..
T Consensus 151 DfaFvD----adK~n-Y~~y~e~~l~Llr~----GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 151 DFAFVD----ADKDN-YSNYYERLLRLLRV----GGVIVVDNVLWP 187 (237)
T ss_pred eEEEEc----cchHH-HHHHHHHHHhhccc----ccEEEEeccccC
Confidence 988873 34444 45889999999999 667777765543
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0026 Score=51.33 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=69.4
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCeEEEEcCCCCC-C--------C
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDLPHVVANLPEADNLKYIAGDMFQF-I--------P 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~--------p 175 (283)
.+.+ .+ ..+++..+|+|+|+..|.+++.+++... ..+++++|+.++-.. ..|.++++|++.+ . +
T Consensus 35 el~~-k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 35 ELNE-KF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----PGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHH-hc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----CCceEEeeeccCccHHHHHHHHcC
Confidence 3444 55 2477889999999999999998888764 456999998544333 3499999999983 2 2
Q ss_pred C--ceEEEec---ccccCCCh------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 P--ADAFLFK---LVFHGLGD------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 ~--~D~v~~~---~vlh~~~d------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
. +|+|++- ++--+++- .-+...+.-+...|+| ||.+++-.
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~ 159 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKV 159 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEE
Confidence 2 5998842 12222221 2234456666778998 67666544
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0077 Score=48.85 Aligned_cols=116 Identities=12% Similarity=0.179 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC---CceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP---PADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p---~~D~v~~~~v 185 (283)
+...++.||||-++.+.+.+.+.+|..+++..|. +.-++.|.+ .++++...+|-+.++. ..|+++....
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 3445699999999999999999999999999998 655554432 7899999999988543 3788877553
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
.-.-...||++-.+-|+. --++ |..+.. ...++++||.+.+|.
T Consensus 95 ----GG~lI~~ILee~~~~l~~---~~rl-ILQPn~-----------------------------~~~~LR~~L~~~~~~ 137 (226)
T COG2384 95 ----GGTLIREILEEGKEKLKG---VERL-ILQPNI-----------------------------HTYELREWLSANSYE 137 (226)
T ss_pred ----cHHHHHHHHHHhhhhhcC---cceE-EECCCC-----------------------------CHHHHHHHHHhCCce
Confidence 455567777777777763 1122 222111 356788899999998
Q ss_pred eeeE
Q 023384 266 HYKI 269 (283)
Q Consensus 266 ~~~~ 269 (283)
+..-
T Consensus 138 I~~E 141 (226)
T COG2384 138 IKAE 141 (226)
T ss_pred eeee
Confidence 7653
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00035 Score=55.59 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=63.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHh-------cCCC------CCCeEEEEcCCCCCCCC-ceEEEec
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA-------NLPE------ADNLKYIAGDMFQFIPP-ADAFLFK 183 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~------~~rv~~~~~d~~~~~p~-~D~v~~~ 183 (283)
.-.+.|||||.|.+++.++..||+.-+.++++ -.|.+ .++. ..++.+...+.+.-.|+ |.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999988888877 33322 2221 34556665555553443 2222222
Q ss_pred ccccCCChhH-----------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 LVFHGLGDED-----------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ~vlh~~~d~~-----------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
-.++-++|+. +..++.+..=.|++ ||.++.+..+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeHH
Confidence 2233333331 24567778888998 78888776543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0085 Score=50.78 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=94.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEEcCCCCCC----------CC-
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQFI----------PP- 176 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~----------p~- 176 (283)
.+...||.+|||-=.-...+.. -++++++-+|.|++++.-++ ..+..++..|+.+.. ++
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3456899999997766665532 12588889999998754332 468889999987321 11
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccc--cccccCCccCCHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV--MSVNATGKERTESE 254 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t~~e 254 (283)
.-++++-.++..++.++..++|+.+.+...| |..++.|.+.+-..... ........... .....--...+.++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~----gs~l~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP----GSRLAFDYVRPLDGEWR-AGMRAPVYHAARGVDGSGLVFGIDRAD 233 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC----CcEEEEEeccccchhHH-HHHHHHHHHhhhcccccccccCCChhh
Confidence 3478888899999999999999999998887 45566776655211110 00000000000 00000011246899
Q ss_pred HHHHHHHCCCCeeeE
Q 023384 255 WAKLFFDACFSHYKI 269 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~ 269 (283)
..++|.+.||+..+.
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00012 Score=56.98 Aligned_cols=62 Identities=23% Similarity=0.482 Sum_probs=46.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---CC--C-ceEEEec
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---IP--P-ADAFLFK 183 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p--~-~D~v~~~ 183 (283)
..|+|+-||.|..++.+++.++ +++.+|+ |..++.++. .++|.++.+|+++- +. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999954 5889999 777776664 67999999999982 22 2 7999874
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00014 Score=62.53 Aligned_cols=100 Identities=20% Similarity=0.392 Sum_probs=65.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCe-EEEeechHHHhc----CCC---CCCeEEEEcCCCC---CCCCceEEEecccccC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIK-CTVLDLPHVVAN----LPE---ADNLKYIAGDMFQ---FIPPADAFLFKLVFHG 188 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~~~~~~~----a~~---~~rv~~~~~d~~~---~~p~~D~v~~~~vlh~ 188 (283)
.+|||+|.|.|.-+.++-.-+|.++ ++++.....+.. ..+ ..+......|+.. ++|..|.|.+..++|.
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 5699999999999988888899886 555555332221 111 2222333444443 4666666655555444
Q ss_pred ----CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 189 ----LGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 189 ----~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
=........++++...+.| ||.++|+|...+
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp 229 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP 229 (484)
T ss_pred hccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence 3344445589999999999 899999997554
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00028 Score=56.42 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEcCCCCC---------C----CCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAGDMFQF---------I----PPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~----p~~D~v~~~ 183 (283)
...++||+||++|.++..++++. +..+++++|+...-. ...+.++.+|+.++ . ..+|+|++-
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhccccccCcceeccc
Confidence 45899999999999999999987 778999999944311 13344445554431 1 248998875
Q ss_pred ccccCC---------ChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 184 LVFHGL---------GDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 184 ~vlh~~---------~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.....- .-+-+...|.-+.+.|+| ||.+++
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~ 137 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVI 137 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEE
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEE
Confidence 422111 112234445555567898 676555
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0039 Score=47.56 Aligned_cols=95 Identities=19% Similarity=0.333 Sum_probs=63.1
Q ss_pred EEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-C--CC---eEEEEcCCCC---CCC---CceEEEeccccc
Q 023384 122 LVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-A--DN---LKYIAGDMFQ---FIP---PADAFLFKLVFH 187 (283)
Q Consensus 122 vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~r---v~~~~~d~~~---~~p---~~D~v~~~~vlh 187 (283)
++|+|||+|... .+....+. ..++++|. +..+..+.. . .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999987 44444333 47788898 555554322 1 11 5777777664 333 48999 544444
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
++.+ ....++++.+.++| +|.+++.+.....
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 4444 56889999999999 6888777765443
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00072 Score=55.99 Aligned_cols=89 Identities=21% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC--CceEEEecccccCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~ 189 (283)
...+|+|||||.=-++.-.....|+.++++.|+ ...++.... ..+.++...|..+..| .+|+.++.-++|.+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPCL 184 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHHH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHHH
Confidence 468999999999999998888889999999999 666655443 5677888889998544 49999999999877
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 023384 190 GDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p 207 (283)
..+.. ..-.++.+.++.
T Consensus 185 e~q~~-g~g~~ll~~~~~ 201 (251)
T PF07091_consen 185 ERQRR-GAGLELLDALRS 201 (251)
T ss_dssp HHHST-THHHHHHHHSCE
T ss_pred HHHhc-chHHHHHHHhCC
Confidence 66543 222345555553
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00028 Score=54.08 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=66.5
Q ss_pred CeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCCC-----CCCceEEEec
Q 023384 120 GSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQF-----IPPADAFLFK 183 (283)
Q Consensus 120 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~-----~p~~D~v~~~ 183 (283)
.+||++||| +|..+..++..-|...+-+.|- .+.++..++ ..++..+..+.... ...||.|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 689999999 5666667777888888999997 444544432 34555555454442 1249999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.++. =|+.-..+.+-|...|+| .|+-++..
T Consensus 111 DClF--fdE~h~sLvdtIk~lL~p---~g~Al~fs 140 (201)
T KOG3201|consen 111 DCLF--FDEHHESLVDTIKSLLRP---SGRALLFS 140 (201)
T ss_pred cchh--HHHHHHHHHHHHHHHhCc---ccceeEec
Confidence 9874 466667889999999999 57755544
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0014 Score=52.22 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=61.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCe---------EEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIK---------CTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-- 175 (283)
+.....|+|-=||+|.++++.+...++.. +++.|+ +.+++.+++ ...+.+...|+.+ +++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 55668999999999999999888777776 899999 777766654 5678999999998 633
Q ss_pred CceEEEecccccC-CCh-hHH----HHHHHHHHHhhcc
Q 023384 176 PADAFLFKLVFHG-LGD-EDG----LKILKKRRAAIAS 207 (283)
Q Consensus 176 ~~D~v~~~~vlh~-~~d-~~~----~~iL~~~~~~L~p 207 (283)
.+|+|++.--.-. ... .+. .++++.+.+.+++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 4899998554332 122 222 3446666777775
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00048 Score=49.83 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=39.2
Q ss_pred EEEcCCccHHHHHHHHHCCCC---eEEEeec-h---HHHhcCCC---CCCeEEEEcCCCCC---CC--CceEEEeccccc
Q 023384 123 VDVGGGNGSLSRIISEAFPGI---KCTVLDL-P---HVVANLPE---ADNLKYIAGDMFQF---IP--PADAFLFKLVFH 187 (283)
Q Consensus 123 lDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~rv~~~~~d~~~~---~p--~~D~v~~~~vlh 187 (283)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.+|..+- ++ .+|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999998887655 5899998 5 23333332 67899999998762 33 589988854 23
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..+....-++.+.+.|+| ||.+++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 345667789999999999 55555443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.007 Score=55.55 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=71.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC---CCC-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ---FIP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p-~~D~v~~~ 183 (283)
.....+|||+++|.|.=+..+++...+ ..++..|+ +.-+...++ ..++.+...|... .++ .||.|++-
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998754 57889998 555544432 3567777777654 234 38999852
Q ss_pred c------ccc-------CCChhHH-------HHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 L------VFH-------GLGDEDG-------LKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ~------vlh-------~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
- +++ .|+.++. .+||+++.+.||| ||.|+-....+
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECCCC
Confidence 1 222 3333322 6889999999999 78776555443
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00025 Score=56.59 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechH-HHhcCCCCCCeEEEEc-CCCCCCCCceEEEecccccCCChhHHH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPH-VVANLPEADNLKYIAG-DMFQFIPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~~~~rv~~~~~-d~~~~~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
...++||+|.|.|..+..++..+.. +...+++. +....++ .+.+++.. +..+.--++|+|.+.++|....++ -
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~ 186 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--F 186 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--H
Confidence 3479999999999999887766543 33334422 3333332 22222221 222111149999999999766665 4
Q ss_pred HHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccC--CHHHHHHHHHHCCCCeeeEEEcC
Q 023384 196 KILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKER--TESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
++|+.++.+|+|. .|++++ ..++|-..--. .........-.-+...+|+.+ ....+.++|+++||.+....+.|
T Consensus 187 kLL~Di~~vl~ps--ngrviv-aLVLP~~hYVE-~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 187 KLLEDIHLVLAPS--NGRVIV-ALVLPYMHYVE-TNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred HHHHHHHHHhccC--CCcEEE-EEEecccceee-cCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 8999999999993 466544 34443211000 000000000000011234433 23456788999999877655543
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0038 Score=54.37 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=65.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH-------CCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC-C-CC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA-------FPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ-F-IP-- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~-~p-- 175 (283)
.....+|+|-.||+|.++.++.+. .+..+++++|+ +..+..++. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345568999999999999998874 47889999999 666544331 3334688899887 3 32
Q ss_pred -CceEEEecccccCC--Ch-----------------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 -PADAFLFKLVFHGL--GD-----------------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 -~~D~v~~~~vlh~~--~d-----------------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.||+|++.=.+-.. .+ ..-...+..+.+.|++ ||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEe
Confidence 49999884332211 11 1112478889999999 78876654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.002 Score=49.20 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=42.5
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ 172 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 172 (283)
.++|||||.|.++..+++.+|..+++.+|. |...+.+++ ..++.++.....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999999 777765553 2457777766665
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=50.25 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=90.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCeEEEEcCCCC-CCC------Cc----
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQ-FIP------PA---- 177 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~-~~p------~~---- 177 (283)
...||-+|||-=.-+ ..-..| ++++.-+|+|++++.-++ ..++.+++.|+++ +.+ +|
T Consensus 93 ~~qvViLgaGLDTRa--yRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRA--YRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccce--eecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 589999999743332 222334 478888899999875443 3489999999995 543 13
Q ss_pred -eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh--hhhhhhhccccc-ccccCCccCCHH
Q 023384 178 -DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE--LTETKFLFDIVM-SVNATGKERTES 253 (283)
Q Consensus 178 -D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~t~~ 253 (283)
-++++-.+|-.++.++..++|++|.....| |+. ++.+...+....... ............ .....-......
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 246 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSR-VAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCC---Cce-EEEeccccHHHHhcccchhhhhhccccccccccceeccCCHH
Confidence 378889999999999999999999999998 454 444443221111000 000000000000 000011123578
Q ss_pred HHHHHHHHCCCCeeeE
Q 023384 254 EWAKLFFDACFSHYKI 269 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~ 269 (283)
+++.++.+.||.....
T Consensus 247 e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 247 EIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhcCEEEEec
Confidence 9999999999987765
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.016 Score=56.23 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC----C--------------------------------------CCeEEEeec-hHH
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF----P--------------------------------------GIKCTVLDL-PHV 153 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~----p--------------------------------------~~~~~~~D~-~~~ 153 (283)
.+...++|..||+|.++++.+... | ..+++++|+ +.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 446899999999999999876531 1 236899999 888
Q ss_pred HhcCCC-------CCCeEEEEcCCCC-CCC----CceEEEeccccc-CCC-hhHHHHHHHHHHHhhc---cCCCCcEEEE
Q 023384 154 VANLPE-------ADNLKYIAGDMFQ-FIP----PADAFLFKLVFH-GLG-DEDGLKILKKRRAAIA---SNGERGKVII 216 (283)
Q Consensus 154 ~~~a~~-------~~rv~~~~~d~~~-~~p----~~D~v~~~~vlh-~~~-d~~~~~iL~~~~~~L~---p~~~gg~lli 216 (283)
++.|++ .+++.+..+|+.+ +.+ .+|+|+++=-.- .+. .++...+.+.+-+.++ + |+++.+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~---g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFG---GWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCC---CCeEEE
Confidence 877664 4678999999987 433 389998864322 122 2344555555555555 5 677776
Q ss_pred Eee
Q 023384 217 IDI 219 (283)
Q Consensus 217 ~d~ 219 (283)
+..
T Consensus 346 lt~ 348 (702)
T PRK11783 346 FSS 348 (702)
T ss_pred EeC
Confidence 653
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0026 Score=54.36 Aligned_cols=99 Identities=21% Similarity=0.349 Sum_probs=71.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHC--------------------CCCeEEEeec---hHHHhcCC-----------------
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF--------------------PGIKCTVLDL---PHVVANLP----------------- 158 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~----------------- 158 (283)
..+||-||||.|.-..+++..+ |.++++.+|+ ..++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999999888888776 2367899998 33442211
Q ss_pred ----C--CCCeEEEEcCCCC-CC---------CCceEEEecccccCC---ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 159 ----E--ADNLKYIAGDMFQ-FI---------PPADAFLFKLVFHGL---GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 159 ----~--~~rv~~~~~d~~~-~~---------p~~D~v~~~~vlh~~---~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+ .-+++|...|+.+ .. |+.++|.+...++-+ +-.+..++|.++-+.++| |..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 0 2356899999988 32 135777776665532 356778999999999999 788999985
Q ss_pred e
Q 023384 220 V 220 (283)
Q Consensus 220 ~ 220 (283)
-
T Consensus 244 p 244 (315)
T PF11312_consen 244 P 244 (315)
T ss_pred C
Confidence 3
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.077 Score=43.37 Aligned_cols=141 Identities=12% Similarity=0.092 Sum_probs=88.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHH----HhcCCCCCCeEEEEcCCCCCC------CCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHV----VANLPEADNLKYIAGDMFQFI------PPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~~------p~~D~v~~~ 183 (283)
+....+||-+|.++|.....+..-- |.-.+.+++. |.. +..+++..+|--+-.|...|. +..|+++.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 6778999999999999999998864 4778888887 533 445555778888888888752 347888763
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
-. + + +++.-++.|+..-||+ ||.++|.=-...-+...+| .+ .-.+-.+.|++.|
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p------------------~~-vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKP---GGHLIISIKARSIDSTADP------------------EE-VFAEEVKKLKEEG 204 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSH------------------HH-HHHHHHHHHHCTT
T ss_pred CC-C--h-HHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCH------------------HH-HHHHHHHHHHHcC
Confidence 32 2 2 4556678888899999 6777665322111111000 00 0123346678889
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|++.+...+.. .+.+++++
T Consensus 205 ~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 205 FKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp CEEEEEEE-TTTSTTEEEEEEE
T ss_pred CChheEeccCCCCCCcEEEEEE
Confidence 99999888843 46666653
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.19 Score=40.35 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=93.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHH----HhcCCCCCCeEEEEcCCCCCC------CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHV----VANLPEADNLKYIAGDMFQFI------PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~rv~~~~~d~~~~~------p~~D~v~~~~ 184 (283)
+++..+||=+|..+|.....+..-.++-.+.+++. |.. +..+++..++--+-+|...|. +..|+++.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 78889999999999999999999888777777776 443 455666778888888888763 34788776
Q ss_pred cccCCC-hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 185 VFHGLG-DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 185 vlh~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+.+ ++++.-+..|+..-||+ ||.+++.=-...-+.+.+| ++.-.+| .+-|++.|
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp------------------~~vf~~e-v~kL~~~~ 206 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTADP------------------EEVFKDE-VEKLEEGG 206 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCCH------------------HHHHHHH-HHHHHhcC
Confidence 333 34455567778888998 5655554322222222110 0001223 35677889
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|++.+...+.. .|.+|.+.
T Consensus 207 f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred ceeeEEeccCCcccceEEEEEe
Confidence 99999888743 47777664
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0037 Score=55.28 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=77.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
......++|+|||.|..+..+.. +.....+++|. +..+..... .....++.+|+.. +++ .||.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 33445899999999999987665 45678888888 444433332 4556668889988 666 399999988
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+.-+.++.. .++++++++++| ||..++-+.+....
T Consensus 187 ~~~~~~~~~--~~y~Ei~rv~kp---GG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPDLE--KVYAEIYRVLKP---GGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCcHH--HHHHHHhcccCC---CceEEeHHHHHhhh
Confidence 888888865 779999999999 78777777665443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=55.30 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC--------CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC--------C
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPG--------IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF--------I 174 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~--------~ 174 (283)
...+|+|.+||+|.++.++++..+. ..++++|+ +..+..++. ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4469999999999999999887752 56789999 666655432 12345565665431 1
Q ss_pred CCceEEEec
Q 023384 175 PPADAFLFK 183 (283)
Q Consensus 175 p~~D~v~~~ 183 (283)
+.||+|+..
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 359999874
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0072 Score=48.36 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C----CCceEEEe
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I----PPADAFLF 182 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~----p~~D~v~~ 182 (283)
...++||+=||+|.++.+.+.+. ..+++.+|. +..+...++ .+++.++..|.+.. . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 35899999999999999988874 347889998 666555443 45789999997652 1 24999999
Q ss_pred cccccCCChhHHHHHHHHHH--HhhccCCCCcEEEEEeeecC
Q 023384 183 KLVFHGLGDEDGLKILKKRR--AAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~--~~L~p~~~gg~lli~d~~~~ 222 (283)
-=....... ..+++..+. ..|++ +.++|+|....
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 544332111 256677766 67887 67888887665
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=47.88 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=52.9
Q ss_pred CeEEEEcCCccHHHH---HHHHHC-CCCeEEEeec-h-HHHhcCCC----CCCeEEEEcCCCCC-----C------CCce
Q 023384 120 GSLVDVGGGNGSLSR---IISEAF-PGIKCTVLDL-P-HVVANLPE----ADNLKYIAGDMFQF-----I------PPAD 178 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~---~l~~~~-p~~~~~~~D~-~-~~~~~a~~----~~rv~~~~~d~~~~-----~------p~~D 178 (283)
..|+++|--.|..+. .+++.+ +..+++++|+ . ..-..+.+ ..||++++||-.++ . +...
T Consensus 34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~v 113 (206)
T PF04989_consen 34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPV 113 (206)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SSE
T ss_pred CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCce
Confidence 899999976666555 455565 8889999998 2 22222222 58999999998763 1 1123
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+|+. ..-|.. +.+...|+.....+++ |+.++|-|...
T Consensus 114 lVil-Ds~H~~--~hvl~eL~~y~plv~~---G~Y~IVeDt~~ 150 (206)
T PF04989_consen 114 LVIL-DSSHTH--EHVLAELEAYAPLVSP---GSYLIVEDTII 150 (206)
T ss_dssp EEEE-SS------SSHHHHHHHHHHT--T---T-EEEETSHHH
T ss_pred EEEE-CCCccH--HHHHHHHHHhCccCCC---CCEEEEEeccc
Confidence 4444 444433 3467889999999999 67777766554
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.031 Score=44.22 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=44.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEc-CCCCC---------CCC--ceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAG-DMFQF---------IPP--ADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~-d~~~~---------~p~--~D~v~~ 182 (283)
+....+|||+||..|.++.-..++. |+..+.++|+-.... ...+.++.+ |+.+| .|+ .|+|+.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 5677899999999999999877765 999999999844322 233445555 55553 243 677765
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.1 Score=45.51 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=71.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEc-CCCC-CCCC--ceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAG-DMFQ-FIPP--ADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~-d~~~-~~p~--~D~v~~~~ 184 (283)
...+..|||==||||.++++.... ++++++.|+ ..+++.++. -....+..+ |... |+++ +|.|..--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456679999999999999987765 889999999 667777664 234444555 8887 7775 89887622
Q ss_pred c------ccCCC-hhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 V------FHGLG-DEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 v------lh~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
- ..--. ++-..++|+.+.+.|++ ||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 1 21111 44467889999999998 787776553
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.09 Score=44.97 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=98.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeechHHHhcCCC----------------------------CCCeEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDLPHVVANLPE----------------------------ADNLKY 165 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~----------------------------~~rv~~ 165 (283)
+.+...|+.+|||.-.+...+...+ +.++++-+|.|++++.--. +.+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 6778899999999999999999988 7889999999877542110 233333
Q ss_pred EEcCCCC--CC----C------C-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhh
Q 023384 166 IAGDMFQ--FI----P------P-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232 (283)
Q Consensus 166 ~~~d~~~--~~----p------~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~ 232 (283)
+..|..+ .+ . + .-+++.--+|-.+.++++..+++.+.+..+. +.+++.|.+.+.+.-+.-...
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~Fg~vM~~ 240 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDRFGKVMLA 240 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCChHHHHHHH
Confidence 4444432 10 0 1 2244555577778899999999999998885 888999998866644320000
Q ss_pred hhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 233 TKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
.+-....-...--..-|.+..++=+.++||+-+.+..+
T Consensus 241 --nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 241 --NLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred --HHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 00011100000022347888888899999998887655
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.057 Score=43.74 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=81.9
Q ss_pred HhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-----CCCeEEEEcC
Q 023384 95 AMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-----ADNLKYIAGD 169 (283)
Q Consensus 95 ~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~rv~~~~~d 169 (283)
.|..+.+...+...+ .. ...+.+||.||=|-|.....+.++-|..++++---|+|....+. .++|....|-
T Consensus 82 VMm~WEtpiMha~A~-ai---~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 82 VMMRWETPIMHALAE-AI---STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhhhHHHHHHHH-HH---hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecc
Confidence 455555555555555 32 46779999999999999999999888877766555888877664 6788888875
Q ss_pred CCC---CCCC--ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 170 MFQ---FIPP--ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 170 ~~~---~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
..+ .+|+ ||-|+.--.-- .-++...+-+.+.+.||| +|.+-.+.-.
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e--~yEdl~~~hqh~~rLLkP---~gv~SyfNg~ 208 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSE--LYEDLRHFHQHVVRLLKP---EGVFSYFNGL 208 (271)
T ss_pred hHhhhccccccCcceeEeechhh--HHHHHHHHHHHHhhhcCC---CceEEEecCc
Confidence 555 3443 88876643211 135677888899999999 6776555543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.011 Score=52.87 Aligned_cols=95 Identities=17% Similarity=0.249 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCC----C---CceEEE
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGI-KCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFI----P---PADAFL 181 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~----p---~~D~v~ 181 (283)
+++|||+=|=||.++...+.. +. ++|.+|+ ..+++.+++ ..++.|+.+|.|+-+ . .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 789999999999999887776 55 8999999 667777764 577899999999832 2 499999
Q ss_pred eccc------ccCCC-hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 182 FKLV------FHGLG-DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 182 ~~~v------lh~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+-=. =.-|+ ..+-.+++..+.+.|+| ||.+++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s 336 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSS 336 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 8210 00011 23457889999999999 67777655
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.017 Score=49.85 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=52.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ 172 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~ 172 (283)
+.+++ .+. ......+||.=+|.|..+.+++++.|+.+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 10 ~Evl~-~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 10 DEVVE-GLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHH-hcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 45555 444 45567999999999999999999998899999999 888877764 4588888887765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.035 Score=46.29 Aligned_cols=96 Identities=19% Similarity=0.186 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC------------CCCeEEEEcCCCCC------CCC-ce
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE------------ADNLKYIAGDMFQF------IPP-AD 178 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~rv~~~~~d~~~~------~p~-~D 178 (283)
...+||++|+|+|..++..+ ......++.-|.+.+++..+. +..+.+...+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 35689999999996655444 446788999998776544331 33566655555442 235 89
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+++.+.++.+-.. -..+++-++..|.. ++.+++.-.
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEEEe
Confidence 9999998875433 23556666666765 464444433
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.056 Score=48.20 Aligned_cols=149 Identities=19% Similarity=0.235 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCccHHHHHH--------HHH-------CCCCeEEEeechHH----H-hcCC---------------CCCC
Q 023384 118 GLGSLVDVGGGNGSLSRII--------SEA-------FPGIKCTVLDLPHV----V-ANLP---------------EADN 162 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l--------~~~-------~p~~~~~~~D~~~~----~-~~a~---------------~~~r 162 (283)
...+|+|+|||+|..+..+ .++ -|.+++..-|+|.. + .... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 3568999999999776543 222 25678888888632 1 1110 0112
Q ss_pred ---eEEEEcCCCC-CCCC--ceEEEecccccCCCh--h----------------------------------HHHHHHHH
Q 023384 163 ---LKYIAGDMFQ-FIPP--ADAFLFKLVFHGLGD--E----------------------------------DGLKILKK 200 (283)
Q Consensus 163 ---v~~~~~d~~~-~~p~--~D~v~~~~vlh~~~d--~----------------------------------~~~~iL~~ 200 (283)
+.-++|.|.. -+|. -++++.+..||.++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2345678888 4663 899999999997763 0 12345555
Q ss_pred HHHhhccCCCCcEEEEEeeecCCCccchh------hh--hhhhhcccccccc----------cCCccCCHHHHHHHHHHC
Q 023384 201 RRAAIASNGERGKVIIIDIVINAEEEEHE------LT--ETKFLFDIVMSVN----------ATGKERTESEWAKLFFDA 262 (283)
Q Consensus 201 ~~~~L~p~~~gg~lli~d~~~~~~~~~~~------~~--~~~~~~~~~~~~~----------~~~~~~t~~e~~~ll~~a 262 (283)
=++-|.| ||++++.-...++...... +. ....+.|+..-.. ..-..++.+|+++.+++.
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~ 299 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEAN 299 (386)
T ss_pred HHHHhcc---CcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhc
Confidence 5667898 8999888766653221100 00 0001111111110 112446899999999988
Q ss_pred C-CCeeeE
Q 023384 263 C-FSHYKI 269 (283)
Q Consensus 263 G-f~~~~~ 269 (283)
| |++.++
T Consensus 300 gsF~I~~l 307 (386)
T PLN02668 300 GSFAIDKL 307 (386)
T ss_pred CCEEeeee
Confidence 7 544443
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.02 Score=51.08 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=67.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC--C--CCceEEEeccccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF--I--PPADAFLFKLVFH 187 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~--~--p~~D~v~~~~vlh 187 (283)
.+|||+-||+|..++..+++.++ -+++..|+ |+.++.+++ ..++++..+|...- . ..||+|.+-- ..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 58999999999999999998755 46899999 877766654 34578888888862 1 2499998843 32
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.+ ..++..+.+++++ ||.+.+.
T Consensus 125 ---s~--~~fld~al~~~~~---~glL~vT 146 (374)
T TIGR00308 125 ---TP--APFVDSAIQASAE---RGLLLVT 146 (374)
T ss_pred ---Cc--HHHHHHHHHhccc---CCEEEEE
Confidence 11 2678888888987 6777776
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.069 Score=46.77 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=86.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--CC-CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--FI-PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~~-p~~D~v~~~~ 184 (283)
...+.+|||.=+|.|.+++.++++-.- +++.+|+ |..++..++ .+++..+.||..+ +. +.+|=|+|..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 345789999999999999999987543 3999999 888765554 5679999999988 33 4599999977
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
.- .+.+.+....+.+++ ||.+...+.+-.+... ++...++++...+.|.
T Consensus 265 p~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~~~----------------------~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 265 PK------SAHEFLPLALELLKD---GGIIHYYEFVPEDDIE----------------------ERPEKRIKSAARKGGY 313 (341)
T ss_pred CC------cchhhHHHHHHHhhc---CcEEEEEeccchhhcc----------------------cchHHHHHHHHhhccC
Confidence 53 234677888888998 6777777755443321 1245667777777775
Q ss_pred C
Q 023384 265 S 265 (283)
Q Consensus 265 ~ 265 (283)
+
T Consensus 314 ~ 314 (341)
T COG2520 314 K 314 (341)
T ss_pred c
Confidence 3
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.024 Score=51.55 Aligned_cols=84 Identities=20% Similarity=0.273 Sum_probs=60.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C-CC---CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F-IP---PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~-~p---~~D~v~~ 182 (283)
..+..+++|+=||.|.++..++++ ..+++++++ ++.++.|++ .+++.|+.+|.++ + .. .+|+|++
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 345679999999999999999965 567999999 888877765 5669999999887 2 21 3788887
Q ss_pred cccccCCChhHHH-HHHHHHHHhhcc
Q 023384 183 KLVFHGLGDEDGL-KILKKRRAAIAS 207 (283)
Q Consensus 183 ~~vlh~~~d~~~~-~iL~~~~~~L~p 207 (283)
|-|..-+. .+++.+.+ ++|
T Consensus 369 -----DPPR~G~~~~~lk~l~~-~~p 388 (432)
T COG2265 369 -----DPPRAGADREVLKQLAK-LKP 388 (432)
T ss_pred -----CCCCCCCCHHHHHHHHh-cCC
Confidence 44544344 44554444 455
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.18 Score=44.40 Aligned_cols=149 Identities=18% Similarity=0.203 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC----------------CCCeEEEeechHH-----HhcCCC-------CCCe--EE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF----------------PGIKCTVLDLPHV-----VANLPE-------ADNL--KY 165 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~----------------p~~~~~~~D~~~~-----~~~a~~-------~~rv--~~ 165 (283)
.++.-+|+|+||.+|..+..+.... |.++++.-|+|.. ...... ..++ .-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 3455689999999999887654322 3467888898632 111110 2333 34
Q ss_pred EEcCCCC-CCCC--ceEEEecccccCCCh-------------------------------------hHHHHHHHHHHHhh
Q 023384 166 IAGDMFQ-FIPP--ADAFLFKLVFHGLGD-------------------------------------EDGLKILKKRRAAI 205 (283)
Q Consensus 166 ~~~d~~~-~~p~--~D~v~~~~vlh~~~d-------------------------------------~~~~~iL~~~~~~L 205 (283)
++|.|.. =+|. -|+++.+..||.++. .+...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6789998 3563 899999999997752 12345565556678
Q ss_pred ccCCCCcEEEEEeeecCCCccchh----hhh--hhhhcccccccc----------cCCccCCHHHHHHHHHHCC-CCee
Q 023384 206 ASNGERGKVIIIDIVINAEEEEHE----LTE--TKFLFDIVMSVN----------ATGKERTESEWAKLFFDAC-FSHY 267 (283)
Q Consensus 206 ~p~~~gg~lli~d~~~~~~~~~~~----~~~--~~~~~~~~~~~~----------~~~~~~t~~e~~~ll~~aG-f~~~ 267 (283)
+| ||++++.-...++...... ... ...+.++.--.. ..-..++.+|+++.+++.| |++.
T Consensus 174 v~---GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EE---EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred cc---CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 99 8998888877776322110 000 011222111110 1124569999999998776 5443
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.52 Score=39.11 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC-----CceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP-----PADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p-----~~D~v~~~~vl 186 (283)
.+++||=|| -.=..+++++...+..+++++|+ ...++..++ +-+|+.+..|+..++| .||+++.-=.
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 458999998 55566777777777889999999 555554432 4459999999999876 3999988332
Q ss_pred cCCChhHHHHHHHHHHHhhcc
Q 023384 187 HGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p 207 (283)
++.+-..-.+.+..++||.
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S
T ss_pred --CCHHHHHHHHHHHHHHhCC
Confidence 3445666779999999997
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.051 Score=49.50 Aligned_cols=130 Identities=17% Similarity=0.164 Sum_probs=85.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCCCCCeEEEEcCCCCCC---C-CceEEEeccccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-----PHVVANLPEADNLKYIAGDMFQFI---P-PADAFLFKLVFH 187 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~~~rv~~~~~d~~~~~---p-~~D~v~~~~vlh 187 (283)
.....|+|..+|.|.++.+|.+. | +.+... +..+...-+ -..--+-+|..+++ | +||++...++|-
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd-RGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD-RGLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh-cccchhccchhhccCCCCcchhheehhhhhh
Confidence 44578999999999999999754 3 333322 233322221 11222445666654 4 499999999888
Q ss_pred CCCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 188 GLGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 188 ~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
.+.+ -+...||-++-|.|+| ||.++|-|.+- ..++++.+++.-.++.
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD~~~-----------------------------vl~~v~~i~~~lrW~~ 486 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIRDTVD-----------------------------VLEKVKKIAKSLRWEV 486 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEeccHH-----------------------------HHHHHHHHHHhCcceE
Confidence 7654 4567889999999999 78888866311 2467778888887775
Q ss_pred eeEEEcCC---cceEEEEeC
Q 023384 267 YKITPIFG---MRFLIEIYP 283 (283)
Q Consensus 267 ~~~~~~~~---~~~~i~~~~ 283 (283)
.....-.+ ...|++|+|
T Consensus 487 ~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 487 RIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEEecCCCCCCCceEEEEEC
Confidence 43332232 478898887
|
; GO: 0008168 methyltransferase activity |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.18 Score=41.57 Aligned_cols=139 Identities=11% Similarity=0.087 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-h-HHHhcCCCCCCeEEEEc-CCCC----CCC-CceEEEecccccC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-P-HVVANLPEADNLKYIAG-DMFQ----FIP-PADAFLFKLVFHG 188 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~-~~~~~a~~~~rv~~~~~-d~~~----~~p-~~D~v~~~~vlh~ 188 (283)
.....+||||..||.++..++++- ..+++++|. - +.....+..+||...+. |+.. .+. ..|++++--.+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF-- 154 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPDLIVIDVSF-- 154 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCCeEEEEeeh--
Confidence 456899999999999999888873 346888887 2 22333444667765443 3332 122 25666653322
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEE-EEEeeecCCCccchhhhhhhhhcccccccc-cCCccCCHHHHHHHHHHCCCCe
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKV-IIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~l-li~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
--...+|-.+...++| ++-+ +++-+-+...+.. ..-.-... ......-.+++.+++++.||++
T Consensus 155 ---ISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~~---------v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 155 ---ISLKLILPALLLLLKD---GGDLVLLVKPQFEAGREQ---------VGKKGVVRDPKLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred ---hhHHHHHHHHHHhcCC---CceEEEEecchhhhhhhh---------cCcCceecCcchHHHHHHHHHHHHhhcCcEE
Confidence 2245789999999998 4433 3344333222111 11000000 1122334678899999999999
Q ss_pred eeEEEcC
Q 023384 267 YKITPIF 273 (283)
Q Consensus 267 ~~~~~~~ 273 (283)
..+...+
T Consensus 220 ~gl~~Sp 226 (245)
T COG1189 220 KGLIKSP 226 (245)
T ss_pred eeeEccC
Confidence 9887664
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.11 Score=45.49 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=65.5
Q ss_pred cCCCCeEEEEcC-CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcC---CCCCCCC-ceEEEecccccCC
Q 023384 116 FEGLGSLVDVGG-GNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGD---MFQFIPP-ADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d---~~~~~p~-~D~v~~~~vlh~~ 189 (283)
..+..+|+=+|. |.|+.+..++++.- .+++++|. ++-.+.+++-..-.++... ..++... +|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 556788888874 67788888999765 99999999 7778777774444444433 2222333 898887554 2
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
..+....++|++ ||+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 336677788998 79999988763
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.012 Score=42.07 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL 150 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~ 150 (283)
.....+|||||+|.+.-.|.+. +-++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4578999999999999888876 667788885
|
; GO: 0008168 methyltransferase activity |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.11 Score=44.55 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCC------CCceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFI------PPADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~------p~~D~v~ 181 (283)
...++|||+=|=||.++...++. ...+++.+|. ...++.+++ .++++|+..|.++.+ ..||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45689999999999999976654 3457999999 667776654 478999999999721 2599998
Q ss_pred ecc---cccCCC-hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 182 FKL---VFHGLG-DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 182 ~~~---vlh~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+-= .=..+. ..+-.++++++.+.|+| ||.++...
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s 238 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS 238 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence 811 100111 23456789999999999 67655443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.048 Score=47.07 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ 172 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~ 172 (283)
.+.+++ .+. ......+||.=-|.|..+.++++++|+.+++++|. |++++.+++ .+|+.++.++|.+
T Consensus 9 l~Evl~-~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLE-ALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHH-HHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHH-hhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 355566 554 56678999999999999999999999999999999 888866654 5788888877654
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.015 Score=47.17 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=44.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ 172 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~ 172 (283)
....|+|.-||.|...+.++.++| .++.+|+ |.-+..|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 557899999999999999999976 5678888 666766654 5799999999997
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.2 Score=39.93 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C---CCceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I---PPADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~---p~~D~v~~~ 183 (283)
.+.++||+=+|+|.++.+.+.+. ..+++.+|. ..+....++ ..++.++..|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 35899999999999999988885 346788887 555443332 47888888888741 1 139999996
Q ss_pred cccc-CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 184 LVFH-GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 184 ~vlh-~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
=-.+ ...+.+..-++-.-...|+| +.++++|.-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 6665 12222212222223466898 66677775443
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.15 Score=40.78 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEEcCCCC-CC----------CC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQ-FI----------PP 176 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~-~~----------p~ 176 (283)
++...||.+|||-=.....+....++++++-+|+|++++.-++ ..+..++..|+.+ .. ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 4445999999999999999988888999999999998765543 1235679999997 21 12
Q ss_pred -ceEEEecccccCCChhHHHHHHHHH
Q 023384 177 -ADAFLFKLVFHGLGDEDGLKILKKR 201 (283)
Q Consensus 177 -~D~v~~~~vlh~~~d~~~~~iL~~~ 201 (283)
.-++++-.++..++.+++..+|+.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 4578888899999999998888876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.094 Score=46.43 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=55.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCC---------------------------------------eEEEeec-hHHHh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGI---------------------------------------KCTVLDL-PHVVA 155 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~~~ 155 (283)
+.....++|-=||+|.++++.+...+++ .++++|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 5555799999999999999988877542 2679999 88887
Q ss_pred cCCC-------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 156 NLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 156 ~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
.|+. .+.|+|.++|+.. +-| .+|+++++=
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 7664 6889999999987 444 589999853
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.09 Score=44.67 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=68.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CC--CCce
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FI--PPAD 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~--p~~D 178 (283)
.++.++++-||||.|.+.++.++. +.+. +..+|+ ..+++..++ ..+|...-||-+. .. ..||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999998887 6654 667787 555554443 6899999998876 23 3599
Q ss_pred EEEecccccCCChhH----HHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 179 AFLFKLVFHGLGDED----GLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~----~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+|+.-.. +.--+. -...+.-+.++||+ +|.+.+...
T Consensus 198 Vii~dss--dpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~e 237 (337)
T KOG1562|consen 198 VIITDSS--DPVGPACALFQKPYFGLVLDALKG---DGVVCTQGE 237 (337)
T ss_pred EEEEecC--CccchHHHHHHHHHHHHHHHhhCC---CcEEEEecc
Confidence 9988431 100111 13456678899998 577766653
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.036 Score=39.90 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=44.8
Q ss_pred ceEEEecccc---c-CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCH
Q 023384 177 ADAFLFKLVF---H-GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 177 ~D~v~~~~vl---h-~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
||+|++.+|. | +|.|+-...+++++++.|+| |.++|+|+-.-.. +..... ..-.+......-...+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEpQ~w~s-----Y~~~~~-~~~~~~~n~~~i~lrP 71 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEPQPWKS-----YKKAKR-LSEEIRENYKSIKLRP 71 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE---HHH-----HHTTTT-S-HHHHHHHHH----G
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeCCCcHH-----HHHHhh-hhHHHHhHHhceEECh
Confidence 7999886653 2 57899999999999999999 6667777422110 000000 0000000011122355
Q ss_pred HHHHHHHHH--CCCCeeeEEEcC
Q 023384 253 SEWAKLFFD--ACFSHYKITPIF 273 (283)
Q Consensus 253 ~e~~~ll~~--aGf~~~~~~~~~ 273 (283)
+++.++|.+ .||+..+....+
T Consensus 72 ~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE---
T ss_pred HHHHHHHHhcccceEEEEEcccC
Confidence 678888877 599988765543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.32 Score=43.59 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=64.7
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccH----HHHHHHHHC---CCCeEEEeechH-----HHhcCCC---------CCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGS----LSRIISEAF---PGIKCTVLDLPH-----VVANLPE---------ADN 162 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~----~~~~l~~~~---p~~~~~~~D~~~-----~~~~a~~---------~~r 162 (283)
.+.|++ .+. -...-.|+|+|.|.|. +..+|+.+- |.+++|+++.|. .++.+.+ .-.
T Consensus 99 NqaIle-A~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~ 175 (374)
T PF03514_consen 99 NQAILE-AFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP 175 (374)
T ss_pred hHHHHH-Hhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc
Confidence 456777 555 3456789999999987 344445443 778999998832 2222221 233
Q ss_pred eEEEEc--CCCCCC--------C-CceEEEecccccCCChh------HHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 163 LKYIAG--DMFQFI--------P-PADAFLFKLVFHGLGDE------DGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 163 v~~~~~--d~~~~~--------p-~~D~v~~~~vlh~~~d~------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.+|... +-.+++ + .+=+|-+...||++.++ ....+|+.+ +.|+| -.++++|.-.+.
T Consensus 176 fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P----~vvv~~E~ea~~ 248 (374)
T PF03514_consen 176 FEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNP----KVVVLVEQEADH 248 (374)
T ss_pred EEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCC----CEEEEEeecCCC
Confidence 445442 211111 1 13345556678888633 233466554 57899 677888866544
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.45 Score=43.34 Aligned_cols=102 Identities=25% Similarity=0.280 Sum_probs=72.2
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-----CCCCCeEEEEcCCCC-CCC--CceEEEecccccCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL-----PEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-----~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~ 190 (283)
-+++-+|||.-.++..+-+.. .-.++-+|. +-+++.. ++..-..+...|+.. .++ +||+++....++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 389999999998888776642 223566777 3333332 225567888889988 666 499999999999853
Q ss_pred -hhHH-------HHHHHHHHHhhccCCCCcEEEEEeee--cCCCc
Q 023384 191 -DEDG-------LKILKKRRAAIASNGERGKVIIIDIV--INAEE 225 (283)
Q Consensus 191 -d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~--~~~~~ 225 (283)
|+++ -..+..++++|+| ||+.+.+... .+..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCC
Confidence 3332 3458899999999 7998888774 44443
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.33 Score=37.00 Aligned_cols=97 Identities=16% Similarity=0.221 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC-----C--CCCeEEEEcCCCC-CCCCceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP-----E--ADNLKYIAGDMFQ-FIPPADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~--~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~ 188 (283)
...+.+|+|+|.|....+.++.. -...+++++ |-.+..++ . +.++.|..-|.++ ++.+|.-+.+..+
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFga--- 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGA--- 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeeh---
Confidence 44799999999999888776654 345788888 55444333 1 6788999999998 7776543333221
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
+.-...+-.+++.-|+. +.+++-.-+-+|+
T Consensus 148 --es~m~dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 148 --ESVMPDLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred --HHHHhhhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 11122333455556666 6787777766655
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.92 Score=40.34 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=70.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCC----C--CCCeEEEEcCCCC-C--CC---CceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLP----E--ADNLKYIAGDMFQ-F--IP---PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~--~~rv~~~~~d~~~-~--~p---~~D~v 180 (283)
...+.+|||.-.+.|.=+..+++..++ ..++.+|. +.-+.... + ..++..+..|... + .+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 566799999999999999999999876 55689998 54443333 2 3456677777543 1 22 28988
Q ss_pred Ee------ccccc-------CCChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 181 LF------KLVFH-------GLGDED-------GLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 181 ~~------~~vlh-------~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
++ ..+++ .++.++ -.+||+...+.||| ||.|+-....+.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCc
Confidence 77 22332 333332 25789999999999 787766665443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.11 Score=46.05 Aligned_cols=49 Identities=27% Similarity=0.456 Sum_probs=37.0
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDM 170 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~ 170 (283)
.+|||+=||.|.++..+++.. -++++++. ++.++.|++ -++++|+.++.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 389999999999999999875 47899998 888877764 57899988754
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.33 Score=41.53 Aligned_cols=66 Identities=24% Similarity=0.279 Sum_probs=53.6
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-----CCCeEEEEcCCCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ 172 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~ 172 (283)
.+.+++ .+. .......||.==|.|..+.++++++|... .+++|. |.+++.+++ .+|+.++.++|.+
T Consensus 12 l~E~i~-~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVE-LLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHH-hcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 355566 555 55668999999999999999999998765 999999 999988875 6789888887654
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.34 Score=42.88 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=70.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec---hHHHhcCCC-------------CCCeEEEEcCCCCC------
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL---PHVVANLPE-------------ADNLKYIAGDMFQF------ 173 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~-------------~~rv~~~~~d~~~~------ 173 (283)
.......+|+|+|.|+....++...-.-.-+++.+ |.-....+. ...++.+.++|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 56667899999999999987766543334445443 333322221 35678899999884
Q ss_pred CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 174 IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 174 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.+.++++++.++.. +++...+ ++++..-+++ |.+++-.++..+..
T Consensus 270 ~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~---gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 270 QTEATVIFVNNVAF--DPELKLR-SKEILQKCKD---GTRIISSKPLVPRP 314 (419)
T ss_pred hhcceEEEEecccC--CHHHHHh-hHHHHhhCCC---cceEeccccccccc
Confidence 23599999999874 5554444 4478888888 78988888887743
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.21 Score=45.69 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=44.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ 172 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~ 172 (283)
++..+.+||+=||||..+.++++. -.+++++++ |+.++.|+. -.+.+|++|-.++
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 566789999999999999988886 457888888 887777664 5788999994444
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.042 Score=42.08 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=37.1
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+.|+|+..|++.|++-++-...++.+++.||| ||++-|.-+
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 38999999999999999999999999999999 798877653
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.76 Score=38.88 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhcc
Q 023384 132 LSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 132 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
++.+|.++.+..++++.|. +..++.+.+.+-+.-...+ .+.+.++|+|+++- |.....++|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCC
Confidence 3677888889999999999 7777776442323222222 22344689999865 556678888888888887
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.67 Score=39.82 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=70.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC----CCC-ceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF----IPP-ADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~----~p~-~D~v~~ 182 (283)
.....+|||..++.|.=+..+++..+ ..+++..|+ +.-+...++ ..++.....|.... .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45668899999999999999999887 678999998 555544332 45677776776652 233 899987
Q ss_pred c------ccccCCChh--------------HHHHHHHHHHHhh----ccCCCCcEEEEEeeec
Q 023384 183 K------LVFHGLGDE--------------DGLKILKKRRAAI----ASNGERGKVIIIDIVI 221 (283)
Q Consensus 183 ~------~vlh~~~d~--------------~~~~iL~~~~~~L----~p~~~gg~lli~d~~~ 221 (283)
- .++..-++- --.++|+++.+.+ +| ||+++-....+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccH
Confidence 2 123322211 1257899999999 99 67776665443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=91.31 E-value=3.9 Score=32.12 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=70.6
Q ss_pred EcCCccHHHHHHHHHCC---CCeEEEeec-hHHHhcCCC---------CCCeEE-EEcCCCC-C--C--C--CceEEEec
Q 023384 125 VGGGNGSLSRIISEAFP---GIKCTVLDL-PHVVANLPE---------ADNLKY-IAGDMFQ-F--I--P--PADAFLFK 183 (283)
Q Consensus 125 vGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~rv~~-~~~d~~~-~--~--p--~~D~v~~~ 183 (283)
||=|.=.++.+|+++++ ++..|.+|. .++.+.-.. ...+.+ ...|..+ . . . .||.|++.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 66677778888999987 344567776 333333321 223332 3335554 1 2 1 39999997
Q ss_pred ccccCCC-----------hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCH
Q 023384 184 LVFHGLG-----------DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 184 ~vlh~~~-----------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
..---.. .+-...+++.+.+.|++ +|.|.|.=. .++.++.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~--------------------------~~~py~~ 133 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLK--------------------------DGQPYDS 133 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeC--------------------------CCCCCcc
Confidence 7643311 22345677888889998 687766331 1112222
Q ss_pred HHHHHHHHHCCCCeeeEEEc
Q 023384 253 SEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~~ 272 (283)
=+++++.+++||...+..+.
T Consensus 134 W~i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVRKVPF 153 (166)
T ss_pred ccHHHHHHhcCCEEEEEecC
Confidence 24567888999998887665
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.5 Score=40.68 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=40.7
Q ss_pred CCCeEEEEcCCccHH-HHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEc----CCCCCC--C--CceE
Q 023384 118 GLGSLVDVGGGNGSL-SRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAG----DMFQFI--P--PADA 179 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~----d~~~~~--p--~~D~ 179 (283)
...++||||+|.... .+--++. .+.++++.|+ +..++.|++ .++|+++.. +++..+ + .||+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 357899999887754 4433444 4899999999 777776664 678888654 455532 1 3999
Q ss_pred EEecccccCCChh
Q 023384 180 FLFKLVFHGLGDE 192 (283)
Q Consensus 180 v~~~~vlh~~~d~ 192 (283)
.++.=-+|.-.++
T Consensus 181 tmCNPPFy~s~~e 193 (299)
T PF05971_consen 181 TMCNPPFYSSQEE 193 (299)
T ss_dssp EEE-----SS---
T ss_pred EecCCccccChhh
Confidence 9998888865554
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=91.05 E-value=4.6 Score=29.46 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCC-C---CCceEEEecccccCCChh
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQF-I---PPADAFLFKLVFHGLGDE 192 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~-~---p~~D~v~~~~vlh~~~d~ 192 (283)
...++|++||-|.=......++++ ++.++..|+.+- .+ ...++++.-|.++| . .++|+|.+.. +++
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a--~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TA--PEGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cC--cccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 445799999887655444444443 488999998433 33 36788999999996 2 3589888855 555
Q ss_pred HHHHHHHHHHHhhcc
Q 023384 193 DGLKILKKRRAAIAS 207 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p 207 (283)
+..+-+-++.++.+-
T Consensus 82 El~~~ildva~aVga 96 (129)
T COG1255 82 ELQSAILDVAKAVGA 96 (129)
T ss_pred HHHHHHHHHHHhhCC
Confidence 666666667777653
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.1 Score=36.78 Aligned_cols=93 Identities=24% Similarity=0.387 Sum_probs=63.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC----CC--C---eEEEeechHHHhcCCCCCCeEEEEcCCCCC---------CC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF----PG--I---KCTVLDLPHVVANLPEADNLKYIAGDMFQF---------IP-- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~----p~--~---~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~---------~p-- 175 (283)
|.+..++||+-...|.++..+.++. |. - +++.+|+..+.. -+.|.-+++|+..+ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 5677899999999999999988875 21 1 278889855533 35677788898873 12
Q ss_pred CceEEEec-----ccccCCChhHH----HHHHHHHHHhhccCCCCcEEE
Q 023384 176 PADAFLFK-----LVFHGLGDEDG----LKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 176 ~~D~v~~~-----~vlh~~~d~~~----~~iL~~~~~~L~p~~~gg~ll 215 (283)
.+|+|++- --+|+++.=-- ...|.-...+|+| ||.++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 38999984 35887765322 2334445567898 66643
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.57 Score=41.17 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=39.4
Q ss_pred CccHHHHHHHHhhhhhhhhHHHHHHHhhhh-hcCCCCeEEEEcCCccHHHHHHHHHC----C----CCeEEEeechH
Q 023384 85 NPGINQRFNEAMASDTEILTSFVVKAECKQ-IFEGLGSLVDVGGGNGSLSRIISEAF----P----GIKCTVLDLPH 152 (283)
Q Consensus 85 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~----p----~~~~~~~D~~~ 152 (283)
.|+..+.|.+....+ +++ .+.. ..+....+|++|.|+|.++..+++.. | .+++..++..+
T Consensus 51 Apels~lFGella~~-------~~~-~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~ 119 (370)
T COG1565 51 APELSQLFGELLAEQ-------FLQ-LWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP 119 (370)
T ss_pred chhHHHHHHHHHHHH-------HHH-HHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH
Confidence 356667777655433 222 2211 03345689999999999999887654 4 57888888843
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.78 Score=42.26 Aligned_cols=121 Identities=17% Similarity=0.302 Sum_probs=77.6
Q ss_pred hhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhh-hcCCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec-h
Q 023384 78 FWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQ-IFEGLGSLVDVGGGNGSLSRIISEAF----PGIKCTVLDL-P 151 (283)
Q Consensus 78 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~-~ 151 (283)
-|+.++++|-.-..|.++.. ..+.+ ..+. ..+....|+-+|+|.|-+..+.+++- -.++.+.++- |
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~-------~AL~D-rvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAIL-------KALLD-RVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhccchHHHHHHHHHH-------HHHHh-hCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 45666777755555544332 22223 2221 12224568889999999988766543 4566788887 7
Q ss_pred HHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEecccccCCChhH-HHHHHHHHHHhhcc
Q 023384 152 HVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDED-GLKILKKRRAAIAS 207 (283)
Q Consensus 152 ~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~-~~~iL~~~~~~L~p 207 (283)
.++...+. ..||+++..||.+ ..| ++|+++. -.|.-|.|.+ ...-|..+-+.|||
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCC
Confidence 66544432 7899999999998 544 4787653 4455566543 45668888899999
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=90.74 E-value=2.7 Score=35.90 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=72.3
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCCCCCeEEEEcCCCC-C----CCCceEEEecccccCCCh--
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPEADNLKYIAGDMFQ-F----IPPADAFLFKLVFHGLGD-- 191 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~----~p~~D~v~~~~vlh~~~d-- 191 (283)
+++|+-||.|.++..+.++. .+ +..+|+ +..++..+..-.-.+..+|+.+ . .+.+|+++..-....++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999999988873 55 567888 6555444331111145666665 2 245899988765554432
Q ss_pred ------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 192 ------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 192 ------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
+....++..+.+.++.. .-+++++|.+..-.. ..+....+++.+.|++.|+.
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~--------------------~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKGLLT--------------------HDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcchhc--------------------cCchHHHHHHHHHHHhCCcE
Confidence 11222344443333321 136788886543111 01122467788889999987
Q ss_pred eee
Q 023384 266 HYK 268 (283)
Q Consensus 266 ~~~ 268 (283)
+..
T Consensus 138 ~~~ 140 (275)
T cd00315 138 VYW 140 (275)
T ss_pred EEE
Confidence 643
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.1 Score=43.54 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=56.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHC-------C-----CCeEEEeec-h---HHHhcCC---------------------C--
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF-------P-----GIKCTVLDL-P---HVVANLP---------------------E-- 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~---------------------~-- 159 (283)
.-+|+|+|=|+|......++.+ | .++++.++. | +.+..+. .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999888777655 4 467888885 3 1111110 0
Q ss_pred ------CCC--eEEEEcCCCCC---CC-CceEEEecccccC-CChhHHHHHHHHHHHhhccCCCCcEEE
Q 023384 160 ------ADN--LKYIAGDMFQF---IP-PADAFLFKLVFHG-LGDEDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 160 ------~~r--v~~~~~d~~~~---~p-~~D~v~~~~vlh~-~~d~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
.++ +++..||+.+- +. .+|++++--.-=. -++--...+|+++++.++| ||.+.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEE
Confidence 122 34566787652 22 3888887431110 0111124789999999998 56654
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.06 E-value=0.59 Score=41.84 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCC---CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 160 ADNLKYIAGDMFQ---FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 160 ~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.+|++++.+++.+ ..| ++|.+++..++-.+++++..++++.+.++++| ||+|+.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 6899999998887 243 49999999999989999999999999999999 8999887765543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=89.95 E-value=2.5 Score=31.43 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=42.5
Q ss_pred CCCCeEEEEcCCccHHH-HHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCC----CCceEEEecccccCCC
Q 023384 117 EGLGSLVDVGGGNGSLS-RIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFI----PPADAFLFKLVFHGLG 190 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~----p~~D~v~~~~vlh~~~ 190 (283)
....+|++||-|.=.-. ..|.+. +..+++.|+ +. .+ ...+.++.-|.|+|- .++|+|.+.+ +
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a--~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----P 79 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KA--PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----P 79 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---cc--ccCcceeeecccCCCHHHhcCCcEEEEeC-----C
Confidence 34569999997765544 444444 489999999 54 22 267889999999963 2589998866 4
Q ss_pred hhHHHHHHHHHHHhhc
Q 023384 191 DEDGLKILKKRRAAIA 206 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~ 206 (283)
+.+...-+.++++...
T Consensus 80 P~El~~~il~lA~~v~ 95 (127)
T PF03686_consen 80 PPELQPPILELAKKVG 95 (127)
T ss_dssp -TTSHHHHHHHHHHHT
T ss_pred ChHHhHHHHHHHHHhC
Confidence 4455555666666654
|
; PDB: 2K4M_A. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.79 Score=38.33 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=48.9
Q ss_pred HHHHHHhhhhhcCCCC--eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHH-------hcCC------C--CCCeEEE
Q 023384 105 SFVVKAECKQIFEGLG--SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV-------ANLP------E--ADNLKYI 166 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~-------~~a~------~--~~rv~~~ 166 (283)
+.+++ +.. +++.. +|||.=+|+|..+..++.. +++++.++. |.+. ..+. . ..|++++
T Consensus 76 ~~l~k-Avg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVAK-AVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHHH-HhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 34555 443 45544 8999999999999999988 778999998 4432 2221 0 1467777
Q ss_pred EcCCCCC---CC-CceEEEe
Q 023384 167 AGDMFQF---IP-PADAFLF 182 (283)
Q Consensus 167 ~~d~~~~---~p-~~D~v~~ 182 (283)
.+|..+- .+ .||+|++
T Consensus 151 ~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYL 170 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEE
Confidence 7776651 22 3777776
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=88.99 E-value=2.7 Score=31.96 Aligned_cols=105 Identities=25% Similarity=0.294 Sum_probs=60.9
Q ss_pred eEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC---CCC--CceEEEecccccCCC---------hhHHHHHHHHH
Q 023384 144 KCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ---FIP--PADAFLFKLVFHGLG---------DEDGLKILKKR 201 (283)
Q Consensus 144 ~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh~~~---------d~~~~~iL~~~ 201 (283)
++.+||+ +++++..++ .+|++++..+-.. -++ ..|+++++.- .+| .+...+.|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 777776654 4689988875544 233 3788777432 222 34567789999
Q ss_pred HHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 202 RAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 202 ~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
.+.|+| ||.+.|+-..--+.+.. +. ....+|.+-|.+..|.+.+....+
T Consensus 79 l~lL~~---gG~i~iv~Y~GH~gG~e----E~----------------~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKP---GGIITIVVYPGHPGGKE----ES----------------EAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEE---EEEEEEEE--STCHHHH----HH----------------HHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhcc---CCEEEEEEeCCCCCCHH----HH----------------HHHHHHHHhCCcceEEEEEEEccC
Confidence 999999 67776665332221111 00 013445555555678877776664
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.68 E-value=4.8 Score=36.08 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEE---cC-CCCC---C-C--CceEEEec
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIA---GD-MFQF---I-P--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d-~~~~---~-p--~~D~v~~~ 183 (283)
.....+||.+|+|. |..+..++++....+++++|. ++..+.+++.....++. .+ +.+. . + .+|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 45567899999988 889999999986546888887 66666554321122222 11 1111 1 1 37777653
Q ss_pred c---------------cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 184 L---------------VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 184 ~---------------vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
- +|+...+. ...++.+.+.|++ +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 2 12222333 3568888999999 799988764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.91 Score=38.41 Aligned_cols=36 Identities=25% Similarity=0.505 Sum_probs=31.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeech
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-----PGIKCTVLDLP 151 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~~ 151 (283)
+.+...++|+|||.|.++..++... +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4566899999999999999999998 56789999983
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.41 E-value=3 Score=36.24 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=68.5
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCC-eEEEEcCCCC--C--------CC--CceE
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADN-LKYIAGDMFQ--F--------IP--PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~r-v~~~~~d~~~--~--------~p--~~D~ 179 (283)
++...+||-+|+| .|.++...++++-..++++.|+ ++.++.|++ +.. +......- + . .. .+|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~-~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKS-SPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccc-cHHHHHHHHHhhccccCCCe
Confidence 5667899999999 5888888899999999999999 888988887 222 22222211 1 1 11 2788
Q ss_pred EEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.+-+..++ ..++....++++ ||.++++....+.
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGAEE 278 (354)
T ss_pred EEEccCch--------HHHHHHHHHhcc---CCEEEEeccCCCc
Confidence 88887765 446667889998 7998888765443
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.30 E-value=0.76 Score=38.71 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=25.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCC--------CCeEEEeech
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFP--------GIKCTVLDLP 151 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~ 151 (283)
.-+|+|+|+|+|.++..+++... .++++.++.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~S 59 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEIS 59 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TT
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCC
Confidence 36999999999999999988654 3589999974
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=87.19 E-value=1.6 Score=36.58 Aligned_cols=95 Identities=22% Similarity=0.354 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccHHHHHH---HHHC--CCCeEEEeec----hHHHh---------------------------cCCC---
Q 023384 119 LGSLVDVGGGNGSLSRII---SEAF--PGIKCTVLDL----PHVVA---------------------------NLPE--- 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l---~~~~--p~~~~~~~D~----~~~~~---------------------------~a~~--- 159 (283)
...|++.|+-.|..++.+ ++.+ ++-++.++|. |+.-. ...+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 379999999998766544 4443 4556888884 22211 0001
Q ss_pred -CCCeEEEEcCCCCCCCC--ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 160 -ADNLKYIAGDMFQFIPP--ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 160 -~~rv~~~~~d~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+++.++.|.|.+.+|. -+-|-+.++=-++-+. ....|+.++..|.| |.++|+|
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~----GGiIi~D 211 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSP----GGIIIFD 211 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEE----EEEEEES
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCC----CeEEEEe
Confidence 36899999999774442 1222222221133333 57789999999999 5555555
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=87.00 E-value=12 Score=29.31 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=72.6
Q ss_pred EcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC------CCCceEEEecccccCCChhHHH
Q 023384 125 VGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF------IPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 125 vGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~------~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
|=||+|..+..+++.. .+.+++++-. ++-.+. ..+++++.+|++++ +.++|+++..-.- ..++ .
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~--~~~~--~ 75 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP--PPKD--V 75 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS--TTTH--H
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh--hccc--c
Confidence 3467888777776654 3467877776 554444 57899999999983 2358888776532 1222 4
Q ss_pred HHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 196 KILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
...+++.++++.++ -.+++++....-...... ...+.. ............+.++.+++.|+..+-+++.
T Consensus 76 ~~~~~~~~a~~~~~-~~~~v~~s~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~ivrp~ 144 (183)
T PF13460_consen 76 DAAKNIIEAAKKAG-VKRVVYLSSAGVYRDPPG------LFSDED-KPIFPEYARDKREAEEALRESGLNWTIVRPG 144 (183)
T ss_dssp HHHHHHHHHHHHTT-SSEEEEEEETTGTTTCTS------EEEGGT-CGGGHHHHHHHHHHHHHHHHSTSEEEEEEES
T ss_pred cccccccccccccc-cccceeeeccccCCCCCc------cccccc-ccchhhhHHHHHHHHHHHHhcCCCEEEEECc
Confidence 56677777776521 235555443332211110 000000 0000111223446678888899876655553
|
... |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=86.68 E-value=5.8 Score=29.48 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 196 KILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
.+++++++.++| ||.+.-.. ....+++-|.++||.+.+....++=
T Consensus 71 e~~~~l~~~~~~---~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 71 ELFKKLARLSKP---GGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp HHHHHHHHHEEE---EEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred HHHHHHHHHhCC---CcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 689999999999 55442211 1245788999999998766554444
Q ss_pred ceEEEEeC
Q 023384 276 RFLIEIYP 283 (283)
Q Consensus 276 ~~~i~~~~ 283 (283)
.-.+.|+|
T Consensus 116 r~~~~a~~ 123 (124)
T PF05430_consen 116 REMLRAVK 123 (124)
T ss_dssp SEEEEEEC
T ss_pred chheEEEc
Confidence 45555543
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.43 E-value=1 Score=40.66 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC-CC--ceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI-PP--ADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~-p~--~D~v~~~~v 185 (283)
+...|||||.|||.++...+++.-+ .++.++. .++.+.|++ +++|+++.---.+ .+ |. +|++....+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4467999999999999988888644 5888877 666666654 6777766543333 22 22 565544333
Q ss_pred ccCCChhHHHHHHHHHHHhhc
Q 023384 186 FHGLGDEDGLKILKKRRAAIA 206 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~ 206 (283)
.-.+--+-+..-++.+++.|-
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 333333334455666666553
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.39 E-value=3 Score=37.01 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=65.5
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--C-CCeEEEEcC-CC----C-CCC-CceEEEeccccc
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPE--A-DNLKYIAGD-MF----Q-FIP-PADAFLFKLVFH 187 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~-~rv~~~~~d-~~----~-~~p-~~D~v~~~~vlh 187 (283)
.+|+=+|+|. |.++..+++.+...++++.|. ++-++.|++ . +.+.....+ .- + .-+ .+|+++-..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3899999994 777788899998899999999 888888876 2 222221121 00 1 112 4899887665
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
....+..+.++++| ||++.++-....+
T Consensus 248 ------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 12468889999999 8999988876555
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.13 E-value=3.8 Score=35.08 Aligned_cols=82 Identities=20% Similarity=0.087 Sum_probs=54.2
Q ss_pred CeEEEEcCC--ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEE-EcCC-CCCCCCceEEEecccccCCChhHH
Q 023384 120 GSLVDVGGG--NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYI-AGDM-FQFIPPADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 120 ~~vlDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~-~~d~-~~~~p~~D~v~~~~vlh~~~d~~~ 194 (283)
.+|+=+|.| -|.++..+.++.+...+++.|. ......+.+. .+... ..+. ......+|+|+++- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 466777766 4667777777777778899998 5556655532 22221 2233 22445689999966 44567
Q ss_pred HHHHHHHHHhhcc
Q 023384 195 LKILKKRRAAIAS 207 (283)
Q Consensus 195 ~~iL~~~~~~L~p 207 (283)
..+++++...|++
T Consensus 78 ~~~l~~l~~~l~~ 90 (279)
T COG0287 78 EEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHhcccCCC
Confidence 7889999999998
|
|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=84.93 E-value=1.7 Score=34.32 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=33.7
Q ss_pred ceEEEecccccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 177 ADAFLFKLVFHGLGD----------EDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.|||+++++||+++. +...+++.+++++|+| +.++|..+..|-
T Consensus 51 ~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~Pv 103 (183)
T cd01842 51 LDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMPV 103 (183)
T ss_pred eeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCCC
Confidence 699999999999875 4567788888888888 566776666553
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=84.72 E-value=2.1 Score=30.24 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=49.2
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc-c-cCCcc-------CCHHH
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-N-ATGKE-------RTESE 254 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~-------~t~~e 254 (283)
.+|=|++.++..++|+++...-+ +++++. +.|.+. .+.+...+ . +.+.. ..+++
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifT--fAP~T~----------~L~~m~~iG~lFP~~dRsp~i~~~~e~~ 65 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFT--FAPRTP----------LLALMHAIGKLFPRPDRSPRIYPHREED 65 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc-----CcEEEE--ECCCCH----------HHHHHHHHhccCCCCCCCCcEEEeCHHH
Confidence 34556889999999999887765 454442 122211 11111111 0 22222 26789
Q ss_pred HHHHHHHCCCCeeeEEEcC-Cc--ceEEEEeC
Q 023384 255 WAKLFFDACFSHYKITPIF-GM--RFLIEIYP 283 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~~~~~-~~--~~~i~~~~ 283 (283)
+.+.++++||++.+...+. ++ ..++|+++
T Consensus 66 l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 66 LRRALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 9999999999988876663 32 45666654
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=84.33 E-value=1.7 Score=34.82 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=55.6
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------------CCCeEEEEcCCCCCCCCceEE
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------------------ADNLKYIAGDMFQFIPPADAF 180 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------~~rv~~~~~d~~~~~p~~D~v 180 (283)
+|-=+|.|.=.+..+++-+-.+.+++++|. ++.++..++ ..|..+. -|+.+.+..+|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 466677776555555544445789999999 766655442 2333332 2222223357888
Q ss_pred EecccccCCC-----hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 181 LFKLVFHGLG-----DEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 181 ~~~~vlh~~~-----d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+++----.-. -....+.++.+.+.+++ +.++|++...+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppG 125 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPG 125 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTT
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEe
Confidence 7754211111 12356789999999998 8899988776654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.94 E-value=5 Score=34.76 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=47.2
Q ss_pred CCeEEEEcCCc-c-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHH
Q 023384 119 LGSLVDVGGGN-G-SLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 119 ~~~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++..-......+..+...++|+|+++- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 36788898775 2 23333443322247889998 6666555431111111112111234589988865 344456
Q ss_pred HHHHHHHHhhcc
Q 023384 196 KILKKRRAAIAS 207 (283)
Q Consensus 196 ~iL~~~~~~L~p 207 (283)
.+++.+...+++
T Consensus 81 ~v~~~l~~~l~~ 92 (307)
T PRK07502 81 AVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHhhCCC
Confidence 778888888887
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=83.34 E-value=6.1 Score=28.42 Aligned_cols=81 Identities=30% Similarity=0.396 Sum_probs=48.0
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC--C-----CCceEEEecccccCCChhHHHH
Q 023384 127 GGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF--I-----PPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 127 gG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~--~-----p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
||.|.++..+++.+ ...+++++|. ++.++.+.+ ..+.++.||..++ + ..++.+++..- +|+....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-cccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 45566777666654 3457999999 777777664 3388999999983 1 24777666432 4444444
Q ss_pred HHHHHHHhhccCCCCcEEEE
Q 023384 197 ILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 197 iL~~~~~~L~p~~~gg~lli 216 (283)
+...+ +.+.| ..+++.
T Consensus 79 ~~~~~-r~~~~---~~~ii~ 94 (116)
T PF02254_consen 79 IALLA-RELNP---DIRIIA 94 (116)
T ss_dssp HHHHH-HHHTT---TSEEEE
T ss_pred HHHHH-HHHCC---CCeEEE
Confidence 44444 44455 355443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.07 E-value=4.8 Score=34.40 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=47.1
Q ss_pred eEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 121 SLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 121 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
+|.=||+|. |.++..+.++ +.+++++|. ++.++.+.+...+.....+. +...++|+|+++- +.....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILAL-----PIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcC-----CHHHHHHH
Confidence 456677663 3444444443 568899998 66666554322221111111 1233589998864 56667788
Q ss_pred HHHHHHhhcc
Q 023384 198 LKKRRAAIAS 207 (283)
Q Consensus 198 L~~~~~~L~p 207 (283)
++++...+++
T Consensus 74 ~~~l~~~l~~ 83 (279)
T PRK07417 74 SEQLIPALPP 83 (279)
T ss_pred HHHHHHhCCC
Confidence 9999888887
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=82.09 E-value=1.1 Score=38.47 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCCCCC------C-ceEEEecc-cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee--cCCCccchh
Q 023384 160 ADNLKYIAGDMFQFIP------P-ADAFLFKL-VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV--INAEEEEHE 229 (283)
Q Consensus 160 ~~rv~~~~~d~~~~~p------~-~D~v~~~~-vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~--~~~~~~~~~ 229 (283)
.-+|.|++.|....++ + ||++++++ ..|.+.++ +.++|+| +.++|+|.. +-+...+.
T Consensus 199 ~vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~----~A~LvvEtaKfmvdLrKEq- 265 (289)
T PF14740_consen 199 NVKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAP----DAVLVVETAKFMVDLRKEQ- 265 (289)
T ss_pred CcEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCC----CCEEEEEcchhheeCCHHH-
Confidence 3567788887766443 2 89887644 66666654 6668898 566777753 11221110
Q ss_pred hhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 230 LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
..--.+.+.+++++|||+.+.
T Consensus 266 ------------------~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 266 ------------------LQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred ------------------HHHHHHHHHHHHHHCCCcccc
Confidence 011256789999999998764
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.80 E-value=9.6 Score=34.27 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=46.8
Q ss_pred CeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCCC------CCCceEEEecc
Q 023384 120 GSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQF------IPPADAFLFKL 184 (283)
Q Consensus 120 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~~------~p~~D~v~~~~ 184 (283)
.+||=|||| -|......+.+.-+.++++.|. ++..+.+.. ..+++..+.|..+. +.++|+++..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 478899985 4555555555666689999999 677777654 45899999999883 23578887754
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=7.8 Score=37.36 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=75.3
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHH------------HH------HHHhhhh-h-cCCCCeEEEEcCCccHHHHHH
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTS------------FV------VKAECKQ-I-FEGLGSLVDVGGGNGSLSRII 136 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~------------~~------~~~~~~~-~-~~~~~~vlDvGgG~G~~~~~l 136 (283)
..||.+++++-.-..|.+++.....-... .+ ++ ..+. . -.....|+-+|+|.|-+....
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~md-rvp~~~~d~~~vVImVVGAGRGPLVdra 718 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQ-RVPVPSPDERTLHLVLLGCGRGPLIDEC 718 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccc-ccccccCCCceEEEEEEcCCccHHHHHH
Confidence 45788888887777777776654321100 00 00 0000 0 011135899999999998887
Q ss_pred HHHCC----CCeEEEeec-hHHH----hcC-C--C--------CCCeEEEEcCCCC-CCC-------------CceEEEe
Q 023384 137 SEAFP----GIKCTVLDL-PHVV----ANL-P--E--------ADNLKYIAGDMFQ-FIP-------------PADAFLF 182 (283)
Q Consensus 137 ~~~~p----~~~~~~~D~-~~~~----~~a-~--~--------~~rv~~~~~d~~~-~~p-------------~~D~v~~ 182 (283)
+++.. .++++.++- |+.+ ..- + . +++|+++..|+.+ ..+ .+|+++.
T Consensus 719 LrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 719 LHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 77654 456777777 4521 111 1 1 3579999999988 322 3787764
Q ss_pred cccccCCChhH-HHHHHHHHHHhhcc
Q 023384 183 KLVFHGLGDED-GLKILKKRRAAIAS 207 (283)
Q Consensus 183 ~~vlh~~~d~~-~~~iL~~~~~~L~p 207 (283)
-.|--|.|++ ..+.|..+.+.||+
T Consensus 799 -ELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 799 -ELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred -hhhcccccccCCHHHHHHHHHhhhh
Confidence 4455566643 34556666666663
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.59 E-value=3.6 Score=36.56 Aligned_cols=37 Identities=35% Similarity=0.728 Sum_probs=31.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHH
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHV 153 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~ 153 (283)
+.+...++|+|.|.|+++..+.-.| ++.+.++|-...
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~ 187 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQR 187 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchH
Confidence 6678899999999999999887766 788999997443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 283 | ||||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 1e-69 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 3e-69 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 9e-66 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 3e-59 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 3e-59 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 3e-59 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 6e-29 | ||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 3e-27 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-26 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 6e-26 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 5e-25 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 3e-19 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 6e-13 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 1e-11 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 3e-08 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 1e-07 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 1e-06 |
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 327 bits (839), Expect = e-112
Identities = 130/283 (45%), Positives = 183/283 (64%), Gaps = 5/283 (1%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MR L H+G F+ +EE+Y LT AS LL++ CL+P V +DP Y L
Sbjct: 75 MRYLAHNGFFEII--TKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKK 132
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
W +LTL+ G FW+F+++NP N FN+AMASD++++ + +C +F+GL
Sbjct: 133 WIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLAL--RDCDFVFDGLE 190
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAF 180
S+VDVGGG G+ ++II E FP +KC V D P VV NL ++NL Y+ GDMF IP ADA
Sbjct: 191 SIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAV 250
Query: 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV 240
L K + H D+D L+ILKK + A+ ++G+RGKV IID+VI+ +++E+++T+ K L D+
Sbjct: 251 LLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVN 310
Query: 241 MSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
M+ GKER E EW KLF +A F HYKI+P+ G LIEIYP
Sbjct: 311 MAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 310 bits (796), Expect = e-106
Identities = 138/292 (47%), Positives = 178/292 (60%), Gaps = 11/292 (3%)
Query: 1 MRLLVHSGCFKKTKVNGQ------EEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAP 54
+RLL H+G F KT V G+ E AY LT S LLI KP CLS V + P +
Sbjct: 69 LRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDM 128
Query: 55 YQSLSSWFK-GAELTLWETVHGIKFWEFMNQNPGINQ--RFNEAMASDTEILTSFVVKAE 111
+ S WF E TL+E G FW+F+N++ + F +AMASD+ + + E
Sbjct: 129 WSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVL--QE 186
Query: 112 CKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMF 171
K++FEGL SLVDVGGG G ++++I E FP +KCTV D P VV NL +NL ++ GDMF
Sbjct: 187 NKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMF 246
Query: 172 QFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231
+ IP ADA L K V H DE LKILK + AI+ G+ GKVIIIDI I+ ++ LT
Sbjct: 247 KSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT 306
Query: 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
E + +D+VM GKERT+ EW KL +DA FS YKITPI G + LIE+YP
Sbjct: 307 ELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 298 bits (764), Expect = e-101
Identities = 65/288 (22%), Positives = 115/288 (39%), Gaps = 21/288 (7%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
+RLL +++ + + LT L D P + +F D F ++S
Sbjct: 76 LRLLAVRDVVRES-----DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVAS 130
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
+ + G + + + + + E M + + + +A F G
Sbjct: 131 ALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARA---GDFPATG 186
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-----ADNLKYIAGDMFQFIP 175
++ DVGGG G + PG++ +LD VVA A K + GD + +P
Sbjct: 187 TVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVP 246
Query: 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235
AD + K + H GDED ++IL R + ++ G+V++ID V+ + H+
Sbjct: 247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAH---GRVLVIDAVVPEGNDAHQSK---- 299
Query: 236 LFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
D +M TG+ERT +E LF A ++ + + P
Sbjct: 300 EMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 298 bits (765), Expect = e-101
Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 11/288 (3%)
Query: 1 MRLLVHSGCFKKTKVN----GQEEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPY 55
+RLL T G E YGL+ L+ D+ L+ + P + +
Sbjct: 89 LRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVW 148
Query: 56 QSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI 115
+ ++ L++ VHG+ +EFM ++ +NQ FN++M ++ E
Sbjct: 149 MNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML--EIYTG 206
Query: 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIP 175
FEG+ +LVDVGGG+G +I +P IK DLP V+ N P ++++ GDMF +P
Sbjct: 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVP 266
Query: 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235
DA + K V H DE ++ L A++ N GKVII++ ++ E E ++
Sbjct: 267 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN---GKVIIVEFILPEEPNTSEESKLVS 323
Query: 236 LFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT-PIFGMRFLIEIY 282
D +M + G+ERTE ++ KL + FS +++ F ++E Y
Sbjct: 324 TLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 294 bits (753), Expect = 4e-99
Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 12/288 (4%)
Query: 1 MRLLVHSGCFKKTKV----NGQEEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPY 55
+RLL T E YGL L K++ L+P + + D + P+
Sbjct: 84 LRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPW 143
Query: 56 QSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI 115
L + +G+ +++ + IN+ FN+ M+S++ I ++ E
Sbjct: 144 FYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL--EMYNG 200
Query: 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIP 175
FEGL ++VDVGGG G+++ +I +P I DLPHV+ + P ++++ GDMF +P
Sbjct: 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVP 260
Query: 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235
DA K + H DE LK+LK AA+ + GKVI+ + ++ + T+
Sbjct: 261 KGDAIFIKWICHDWSDEHCLKLLKNCYAALPDH---GKVIVAEYILPPSPDPSIATKVVI 317
Query: 236 LFDIVM-SVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIY 282
D +M + N GKERTE E+ L + F +K+ +++E
Sbjct: 318 HTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFL 365
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 290 bits (745), Expect = 8e-98
Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 24/292 (8%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
+RLL G F G ++ + A S +L+ D ++ P+ ++ L+
Sbjct: 92 LRLLATVGVFDDL---GHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTH 148
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
+ E ++ +G FW+ +++P + FN AM S + V A F G
Sbjct: 149 SVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY---DFSGAA 204
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQF 173
+ VD+GGG GSL + +AFPG++ T+L+ P V E AD + + GD F+
Sbjct: 205 TAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFET 264
Query: 174 IPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232
IP AD +L K V H D+D ++IL++ A+ + ++++ID +I+ L
Sbjct: 265 IPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPD---SRLLVIDNLIDERPAASTL-- 319
Query: 233 TKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI-FGMRFLIEIYP 283
D+++ V G ER+ESE+A L + + P G ++EI
Sbjct: 320 ---FVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 290 bits (743), Expect = 1e-97
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 12/288 (4%)
Query: 1 MRLLVHSGCFKKTKVNGQ----EEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPY 55
+RLL G+ +YG L ++ ++ + D + +
Sbjct: 82 LRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESW 141
Query: 56 QSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI 115
L + +G+ +E+ +P N+ FNE M + + I+T ++ E
Sbjct: 142 YYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL--ELYHG 198
Query: 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIP 175
FEGLG+LVDVGGG G+ I+ +P IK DLPHV++ P+ + ++ GDMF+ +P
Sbjct: 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVP 258
Query: 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235
D L K + H D+ +LK A+ ++ GKV+++ ++ E + ++ F
Sbjct: 259 SGDTILMKWILHDWSDQHCATLLKNCYDALPAH---GKVVLVQCILPVNPEANPSSQGVF 315
Query: 236 LFDIVM-SVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIY 282
D++M + N G+ER E E+ L A F+ K T I+ + IE
Sbjct: 316 HVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 3e-94
Identities = 60/297 (20%), Positives = 109/297 (36%), Gaps = 28/297 (9%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVF-VDPFFVAPYQSLS 59
+R LV G ++ + T LL D P + + L
Sbjct: 73 IRHLVAIGLLEED----APGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLP 128
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
+ +E+++G F+E + P + F+ +A D ++ A + +
Sbjct: 129 DAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAA-YD--WTNV 184
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ 172
++DVGGG G + I+ P + TVL++ V +D + + GD F+
Sbjct: 185 RHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE 244
Query: 173 FIPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231
+P ADA + V D D ++IL + A+ G+++I + E+
Sbjct: 245 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG---GRILIHERDD---LHENSFN 298
Query: 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFG-----MRFLIEIYP 283
E D+ M V G RT +W L A ++ + L+ + P
Sbjct: 299 EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 276 bits (708), Expect = 4e-92
Identities = 58/297 (19%), Positives = 102/297 (34%), Gaps = 25/297 (8%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFF-VAPYQSLS 59
+R L G + + G T LL P + + + L
Sbjct: 70 VRHLTVVGVLEGGEKQG--RPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLL 127
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
+ + +G FWE ++ + + F+ M+ D ++ A + +
Sbjct: 128 DVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADA-YD--WSAV 183
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ 172
++DVGGGNG + I+ P ++ T+++L AD + GD F+
Sbjct: 184 RHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK 243
Query: 173 FIPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231
+P AD L V DED L IL+ A+ G+++++D +
Sbjct: 244 PLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG---GRLLVLDRADVEGDGADRFF 300
Query: 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRF-----LIEIYP 283
T L D+ M G+ RT E L A + ++E
Sbjct: 301 ST--LLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 274 bits (703), Expect = 7e-92
Identities = 64/292 (21%), Positives = 110/292 (37%), Gaps = 28/292 (9%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPF-FVAPYQSLS 59
+R LV G F + + YGLT L D + + + L+
Sbjct: 59 LRHLVAVGLFTRD----GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELA 114
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
+ + + +G FWE + +P ++ F+ M+ E+ + + + L
Sbjct: 115 HSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAK-YD--WAAL 170
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ 172
G +VDVGGG+G L + A + TVLDL + + + + G F
Sbjct: 171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD 230
Query: 173 FIPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231
+P A ++ V H D + IL++ A S G V++I+ V E
Sbjct: 231 PLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSG---GVVLVIEAVAGDEHAGT--- 284
Query: 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
D+ M GKER+ +E +L A + PI ++E+
Sbjct: 285 ----GMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI-SYVSIVEMTA 331
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 4e-90
Identities = 69/291 (23%), Positives = 114/291 (39%), Gaps = 27/291 (9%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
MRLLV F+ + Y T S LL +D V F F A +
Sbjct: 62 MRLLVAFEIFQGD----TRDGYANTPTSHLL-RDVEGSFRDMVL-FYGEEFHAAWTPACE 115
Query: 61 WFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG 120
+E G F+ ++ + P +RF AM + + F G
Sbjct: 116 ALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD----FRG-R 169
Query: 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQF 173
S VDVGGG+G L++ I +A P + +LD + + + + + GDM Q
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE 229
Query: 174 IPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232
+P D +L + L + L++L R A+A + G+V++I+ I+A E
Sbjct: 230 VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGD---GRVVVIERTISASEPSP---- 282
Query: 233 TKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
L+D+ + + G+ RT E L F+ +I + +I
Sbjct: 283 MSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 6e-83
Identities = 51/294 (17%), Positives = 113/294 (38%), Gaps = 30/294 (10%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFV---APYQS 57
+ L ++ + LT + + P + + Y
Sbjct: 85 LETLRQMRVINL-----EDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMG 139
Query: 58 LSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFE 117
LS +G + + + N F E S+ + +++ K +
Sbjct: 140 LSQAVRGQK-------NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEE-AK--LD 189
Query: 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDM 170
G+ ++DVGGG G +S + + FP + T+L+LP + + E AD ++ IA D+
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDI 249
Query: 171 FQ-FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE 229
++ P ADA LF + + ++ + KK A+ S G+++I+D+VI+ E +
Sbjct: 250 YKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG---GRLLILDMVIDDPENPNF 306
Query: 230 LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283
+ ++ M + + ++ + ++ + + + + + P
Sbjct: 307 DYLSHYILGAGMPFS-VLGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVKP 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 214 bits (546), Expect = 3e-68
Identities = 50/290 (17%), Positives = 102/290 (35%), Gaps = 30/290 (10%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTA-ASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLS 59
LV G K Q E Y LT+ ++ L + + + + + P + L+
Sbjct: 60 CDYLVIIGFMTK-----QAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLT 114
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
+ + ++ + +F +AM+ + + +
Sbjct: 115 AAVLKGGTAISS-------EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQL-VNENKIEP 166
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ 172
++D+ +G +++ P + +D V+ E A IAG F+
Sbjct: 167 LKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE 226
Query: 173 --FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL 230
+ D L H ++L+K + A+A GKVI+ D + N++
Sbjct: 227 VDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVE---GKVIVFDFIPNSDRITPPD 283
Query: 231 TETKFLFDIVMSVN-ATGKERTESEWAKLFFDACFSHYKITPIFGMRFLI 279
F +VM G T +E+ +F +A FSH ++ + + +
Sbjct: 284 A---AAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 4e-62
Identities = 44/294 (14%), Positives = 92/294 (31%), Gaps = 40/294 (13%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTA-ASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLS 59
+ L G K + +A+ TA L + P V + L
Sbjct: 77 LHALAALGLLTK-----EGDAFRNTALTERYLTTTSADYIGP--IVEHQYLQWDNWPRLG 129
Query: 60 SWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
+ E + + FN+AM ++ + V + +F
Sbjct: 130 EILRS------EKPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSEL---GVFARA 180
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ 172
+++D+ GG+G+ + P + + DLP + +++ ++
Sbjct: 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLD 240
Query: 173 FIPP----ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH 228
AD + H + +++ + G ++I+ + +N +
Sbjct: 241 ARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPG---GALLILTMTMNDDRVTP 297
Query: 229 ELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDACF-----SHYKITPIFGMR 276
L+ F + M VN G+ A + DA S + T + G R
Sbjct: 298 ALS---ADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLIGQR 348
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 7e-59
Identities = 43/292 (14%), Positives = 87/292 (29%), Gaps = 26/292 (8%)
Query: 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSS 60
+ + G +E+ Y L A L+ DK + F L
Sbjct: 71 LEASLTIGTILL-----EEDRYVLAKAGWFLLNDKM---ARVNMEFNHDVNYQGLFHLEE 122
Query: 61 WFK-GAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGL 119
G L +E ++Q P Q+ +
Sbjct: 123 ALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF--SHHP 180
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ 172
L+D+GG G + + ++ T++DLP + + + ++ + ++
Sbjct: 181 KRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLD 240
Query: 173 FIPP----ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH 228
P DA +E+ + IL + +I + KV I++ + + + E
Sbjct: 241 RDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKD---SKVYIMETLWDRQRYET 297
Query: 229 E-LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLI 279
T+ N K + + +A +I G+ I
Sbjct: 298 ASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSI 349
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-06
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 12/153 (7%)
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHV---VA--NLPEADNLKYIAGDM--FQ 172
++D+G G G LS + E +P T++D+ +A +KYI D +
Sbjct: 46 PDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD 105
Query: 173 FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232
F D + L H L DED ++ K+ + + + G I D+V L
Sbjct: 106 FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKES---GIFINADLVHGETAFIENL-- 160
Query: 233 TKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265
K ++ + + +E + + + D
Sbjct: 161 NKTIWRQYVENSGLTEEEIAAGYERSKLDKDIE 193
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-06
Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 23/153 (15%)
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVV----ANLPEADNLKYIAGDMFQFIP 175
+D G G G +++ + + + H++ L K+I M
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL 154
Query: 176 PA---DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232
P D + + L D D +K K + A+ N G + + + + +
Sbjct: 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN---GYIFFKENCSTGDRFLVDKED 211
Query: 233 TKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265
+ ++ + +LF ++
Sbjct: 212 SSLTR-------------SDIHYKRLFNESGVR 231
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 9e-05
Identities = 45/319 (14%), Positives = 90/319 (28%), Gaps = 124/319 (38%)
Query: 11 KKTKVNGQEEAYGLTAAST--LLIK---DKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGA 65
T ++ + LT LL+K +P L P + +P ++
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSII--------AE 335
Query: 66 EL----TLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLG- 120
+ W+ W+ +N + + + S +L AE +++F+ L
Sbjct: 336 SIRDGLATWD------NWKHVNCD-----KLTTIIESSLNVLEP----AEYRKMFDRLSV 380
Query: 121 ----------------------------------SLVDVGGGNGSLS------------- 133
SLV+ ++S
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 134 ------RIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIP-------PADAF 180
R I + + K D ++ P D Y + I +
Sbjct: 441 NEYALHRSIVDHYNIPKT--FDSDDLI--PPYLDQ--YF----YSHIGHHLKNIEHPERM 490
Query: 181 -LFKLVFHGL------------------GDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221
LF++VF + L+ LK + I N + + ++ I+
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 222 NAEEEEHELTETKFLFDIV 240
+ E L +K+ D++
Sbjct: 551 FLPKIEENLICSKYT-DLL 568
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 16/155 (10%)
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA----NLPEADNLKYIAGDMFQFI 174
G++++ G G G+L+ + A G ++ + LP GD F
Sbjct: 47 GNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFE 102
Query: 175 PPA--DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232
P D + FH L D++ + K + GK++ D + ++ + E
Sbjct: 103 VPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG---GKIVFADTIFADQDAYDKTVE 159
Query: 233 TKFLFDIVMSVNATGKER--TESEWAKLFFDACFS 265
N E +F + F
Sbjct: 160 AAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 4e-04
Identities = 28/156 (17%), Positives = 57/156 (36%), Gaps = 15/156 (9%)
Query: 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV--ANLPEADNLKYIAGDMFQFIPP 176
G ++++ G G +R +S + T LD ++ A DN+++ D+F + P
Sbjct: 48 GDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPD 105
Query: 177 A--DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETK 234
DA F + D+ + R+A+A G V +D+ + E +
Sbjct: 106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG---GVVEFVDVTDHERRLEQQDDSEP 162
Query: 235 FLFDIVMSVNATGKE-----RTESEWAKLFFDACFS 265
+ + R+ +E + +S
Sbjct: 163 EVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS 198
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 283 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.9 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.86 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.82 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.81 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.8 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.8 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.79 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.79 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.78 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.78 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.78 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.77 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.77 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.77 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.76 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.76 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.75 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.75 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.75 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.75 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.75 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.74 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.74 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.74 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.73 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.73 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.73 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.73 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.73 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.73 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.73 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.72 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.72 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.72 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.72 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.72 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.71 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.71 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.71 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.7 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.7 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.7 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.7 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.7 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.69 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.69 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.69 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.69 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.69 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.68 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.67 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.66 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.66 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.63 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.63 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.63 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.63 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.62 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.62 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.61 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.61 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.6 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.6 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.6 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.58 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.58 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.58 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.58 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.55 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.55 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.54 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.54 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.54 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.53 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.52 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.52 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.49 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.49 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.48 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.48 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.47 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.47 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.47 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.46 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.46 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.46 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.45 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.45 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.44 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.44 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.43 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.43 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.43 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.43 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.42 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.41 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.41 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.41 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.41 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.41 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.41 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.4 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.4 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.4 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.38 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.38 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.38 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.38 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.38 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.38 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.37 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.37 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.36 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.36 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.35 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.35 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.35 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.34 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.33 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.32 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.32 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.3 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.3 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.3 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.29 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.29 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.28 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.28 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.28 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.27 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.27 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.26 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.26 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.25 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.24 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.24 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.24 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.24 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.23 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.23 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.23 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.23 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.22 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.22 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.22 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.22 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.21 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.21 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.21 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.2 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.2 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.2 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.19 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.19 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.19 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.19 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.18 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.18 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.17 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.17 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.17 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.16 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.16 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.16 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.15 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.15 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.15 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.14 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.13 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.12 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.11 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.1 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.09 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.09 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.09 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.09 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.08 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.07 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.07 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.07 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.07 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.06 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.06 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.05 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.05 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.05 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.05 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.04 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.03 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.03 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.03 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.03 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.02 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.02 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.01 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.01 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.0 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.0 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.0 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.0 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.0 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.0 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.99 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.98 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.97 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.97 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.92 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.92 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.92 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.9 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.89 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.86 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.85 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.83 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.81 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.8 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.77 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.77 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.76 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.74 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.71 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.7 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.68 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.67 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.66 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.65 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.64 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.63 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.62 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.62 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.61 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.61 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.57 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.53 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.5 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.49 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.49 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.49 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.48 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.46 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.45 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.43 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.42 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.39 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.39 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.37 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.34 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.32 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.3 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.22 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.21 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.2 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.15 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 98.15 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.13 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.11 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.06 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.03 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.0 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.99 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.92 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.84 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.77 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.76 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.7 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.69 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.69 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.63 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.59 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.58 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.51 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.47 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.41 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.35 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.27 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.19 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.05 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.93 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.79 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.7 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.33 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.3 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.13 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.83 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.67 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 93.53 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 93.06 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 92.73 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 91.95 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 91.74 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 90.35 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.99 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.98 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 89.36 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.99 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 88.61 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 88.43 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 87.68 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 87.35 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 85.06 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 84.68 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 84.31 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 83.96 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 83.0 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 82.57 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 81.82 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 81.19 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 80.85 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 80.63 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 80.11 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=350.30 Aligned_cols=271 Identities=19% Similarity=0.316 Sum_probs=241.2
Q ss_pred CccccccCeeEeeccCCCCceEecchhcc-hhhcCCCCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhC---C
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAAST-LLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHG---I 76 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g---~ 76 (283)
||+|+++|+|++... ++.+.|+||+.++ +|.+++|.++..++.+.. +..+..|.+|.+++++++ +++...+| .
T Consensus 64 Lr~L~~~gll~~~~~-~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~ 140 (353)
T 4a6d_A 64 LDICVSLKLLKVETR-GGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAE 140 (353)
T ss_dssp HHHHHHTTSEEEEEE-TTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCS
T ss_pred HHHHHHCCCEEEecc-CccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChH
Confidence 588999999986542 1145799999986 788888889998888764 456889999999999997 67888887 3
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhc
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVAN 156 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 156 (283)
++|+++.++|+....|..+|...+....+.+++ .++ +++..+|||||||+|.++..+++++|+++++++|+|++++.
T Consensus 141 ~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~-~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~ 217 (353)
T 4a6d_A 141 ELFTAIYRSEGERLQFMQALQEVWSVNGRSVLT-AFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWT 217 (353)
T ss_dssp SHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHH-SSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH-hcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHH
Confidence 789999999999999999999988888888999 888 88889999999999999999999999999999999999877
Q ss_pred CCC------CCCeEEEEcCCCC-CCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh
Q 023384 157 LPE------ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE 229 (283)
Q Consensus 157 a~~------~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~ 229 (283)
+++ .+||+++.+||++ +.|++|+|+++++||+|+|+++++||++++++|+| ||+++|+|.+++++...+
T Consensus 218 a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~- 293 (353)
T 4a6d_A 218 AKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP- 293 (353)
T ss_dssp HHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC-
T ss_pred HHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC-
Confidence 653 6899999999998 56789999999999999999999999999999999 899999999998776554
Q ss_pred hhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 230 LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
.....+|+.|+...+|++||.+||+++|++|||+.+++++.++..++|+|+|
T Consensus 294 --~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 294 --LLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp --HHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred --HHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 2345789999999999999999999999999999999999988899999998
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=329.38 Aligned_cols=277 Identities=27% Similarity=0.466 Sum_probs=241.6
Q ss_pred CccccccCeeEeeccC--CC--CceEecchhcchhhcCC-CCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhC
Q 023384 1 MRLLVHSGCFKKTKVN--GQ--EEAYGLTAASTLLIKDK-PYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHG 75 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~--~~--~~~y~~t~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g 75 (283)
||+|+++|+|+++... .+ ++.|++|+.+++|+.+. +.++++++.+..++.++..|.+|.+++++|. ++|+..+|
T Consensus 82 Lr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g 160 (364)
T 3p9c_A 82 LRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYG 160 (364)
T ss_dssp HHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHS
T ss_pred HHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcC
Confidence 6899999999987310 00 26899999999887654 6689998887766677899999999999987 78999999
Q ss_pred CchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHh
Q 023384 76 IKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVA 155 (283)
Q Consensus 76 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~ 155 (283)
.++|+++.++|+..+.|+.+|...+......+++ .++ .+++..+|||||||+|.++..+++++|+++++++|+|++++
T Consensus 161 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~-~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 238 (364)
T 3p9c_A 161 MSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLE-LYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVIS 238 (364)
T ss_dssp SCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-HCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT
T ss_pred CCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHH-hcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHH
Confidence 9999999999999999999999988877777888 775 26778999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhh
Q 023384 156 NLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235 (283)
Q Consensus 156 ~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~ 235 (283)
.+++.+|++|+.+|+++++|..|+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++............
T Consensus 239 ~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~ 315 (364)
T 3p9c_A 239 EAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVF 315 (364)
T ss_dssp TCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHH
T ss_pred hhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHH
Confidence 9988889999999999987767999999999999999999999999999999 8999999999887644321112235
Q ss_pred hccccccc-ccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 236 LFDIVMSV-NATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 236 ~~~~~~~~-~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
.+|+.|+. ..+|++||.+||+++|++|||+.+++.+.++..++||++|
T Consensus 316 ~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 316 HVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 67888885 4689999999999999999999999999999999999987
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=323.89 Aligned_cols=277 Identities=28% Similarity=0.492 Sum_probs=240.4
Q ss_pred CccccccCeeEeeccC--CC--CceEecchhcchhhcC-CCCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhC
Q 023384 1 MRLLVHSGCFKKTKVN--GQ--EEAYGLTAASTLLIKD-KPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHG 75 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~--~~--~~~y~~t~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g 75 (283)
||+|+++|+|++.... .+ ++.|++|+.++.|+.+ ++.++++++.+..++.++..|.+|.+++++|. ++|+..+|
T Consensus 84 Lr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g 162 (368)
T 3reo_A 84 LRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYG 162 (368)
T ss_dssp HHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSS
T ss_pred HHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhC
Confidence 6899999999986200 00 2689999999977654 46789999888766677899999999999987 78999999
Q ss_pred CchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHh
Q 023384 76 IKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVA 155 (283)
Q Consensus 76 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~ 155 (283)
.++|+|+.++|+..+.|..+|...+......+++ .++ .+++..+|||||||+|.++..+++++|+++++++|+|++++
T Consensus 163 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~-~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 240 (368)
T 3reo_A 163 MNIFDYHGTDHRINKVFNKGMSSNSTITMKKILE-MYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240 (368)
T ss_dssp SCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHT-TCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT
T ss_pred CCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHH-hcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHH
Confidence 9999999999999999999999988877777787 665 26777999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhh
Q 023384 156 NLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235 (283)
Q Consensus 156 ~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~ 235 (283)
.+++..+++++.+|+++++|..|+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++....+.......
T Consensus 241 ~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~ 317 (368)
T 3reo_A 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVI 317 (368)
T ss_dssp TCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHH
T ss_pred hhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHH
Confidence 9988889999999999987767999999999999999999999999999999 8999999999887654321222335
Q ss_pred hcccccccc-cCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 236 LFDIVMSVN-ATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 236 ~~~~~~~~~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
.+|+.|+.. .++++||.+||+++|++|||+.+++.+..+..++||++|
T Consensus 318 ~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 318 HTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp HHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred hhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 678888765 489999999999999999999999999988899999986
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=314.89 Aligned_cols=267 Identities=24% Similarity=0.416 Sum_probs=237.5
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCCCCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchhh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWE 80 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~ 80 (283)
||+|+++|+|++ . ++.|++|+.++.|.++++.++.+++.+..++..+..|.+|++++++|. ++|+..+|.++|+
T Consensus 76 Lr~l~~~g~l~~-~----~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~ 149 (348)
T 3lst_A 76 LRLLAVRDVVRE-S----DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDA 149 (348)
T ss_dssp HHHHHHTTSEEE-E----TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHH
T ss_pred HHHHHhCCCEEe-c----CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHH
Confidence 689999999999 4 699999999998888888889998887766557899999999999987 6788899999999
Q ss_pred HhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-
Q 023384 81 FMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE- 159 (283)
Q Consensus 81 ~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~- 159 (283)
++.++|+..+.|...|..........+++ .++ +++..+|||||||+|.++..+++++|+++++++|+++++...+.
T Consensus 150 ~~~~~~~~~~~f~~~m~~~~~~~~~~~~~-~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~ 226 (348)
T 3lst_A 150 YFDGDAEVEALYYEGMETVSAAEHLILAR-AGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLD 226 (348)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTHHHHHH-HSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCC
T ss_pred HHHhCHHHHHHHHHHHHHhhhhhHHHHHH-hCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhccccc
Confidence 99999999999999999988888888888 887 78889999999999999999999999999999999888773321
Q ss_pred ----CCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhh
Q 023384 160 ----ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKF 235 (283)
Q Consensus 160 ----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~ 235 (283)
.+|++++.+|+++++|.||+|+++++||+|+|+++.++|++++++||| ||+++|.|.+.++..... ...
T Consensus 227 ~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~~----~~~ 299 (348)
T 3lst_A 227 APDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDAH----QSK 299 (348)
T ss_dssp CGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSCC----HHH
T ss_pred ccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCcc----hhh
Confidence 578999999999877799999999999999999999999999999999 899999999887764321 234
Q ss_pred hcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 236 LFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 236 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
..++.|+...++++++.+||+++|+++||+++++++..+..++|+++|
T Consensus 300 ~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 300 EMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp HHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred hcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 677888777889999999999999999999999999777899999986
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=314.54 Aligned_cols=267 Identities=28% Similarity=0.514 Sum_probs=239.6
Q ss_pred CccccccCeeEeeccCCCCce-EecchhcchhhcCCCCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEA-YGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFW 79 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 79 (283)
||+|++.|+|++++ ++. |++|+.++.|.++++.++.+++.+..++..+..|.+|.++++++. ++|...+|.++|
T Consensus 92 Lr~L~~~g~l~~~~----~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~ 166 (369)
T 3gwz_A 92 LRLLATVGVFDDLG----HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFW 166 (369)
T ss_dssp HHHHHHTTSSEECS----STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHH
T ss_pred HHHHHhCCCEEEeC----CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHH
Confidence 68999999999976 578 999999998888888888888888766556789999999999987 678889999999
Q ss_pred hHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 80 EFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 80 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
+++.++|+..+.|...|........+.+++ .++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 167 ~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~-~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 243 (369)
T 3gwz_A 167 QLTHEDPKARELFNRAMGSVSLTEAGQVAA-AYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARE 243 (369)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHhhhHHHHHH-hCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHH
Confidence 999999999999999999988887888888 787 77889999999999999999999999999999999888877764
Q ss_pred -------CCCeEEEEcCCCCCCC-CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhh
Q 023384 160 -------ADNLKYIAGDMFQFIP-PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231 (283)
Q Consensus 160 -------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~ 231 (283)
.+||+++.+|+++++| .||+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++.....
T Consensus 244 ~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~--- 317 (369)
T 3gwz_A 244 LLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAAS--- 317 (369)
T ss_dssp HHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCHH---
T ss_pred hhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCc---
Confidence 4789999999998777 69999999999999999999999999999999 899999999988765431
Q ss_pred hhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE-cCCcceEEEEeC
Q 023384 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP-IFGMRFLIEIYP 283 (283)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 283 (283)
....++.|+...++++||.+||+++|+++||+++++++ ..+..++||++|
T Consensus 318 --~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 318 --TLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp --HHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred --hhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 34778888877899999999999999999999999999 577899999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=305.53 Aligned_cols=277 Identities=47% Similarity=0.879 Sum_probs=237.6
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCCCCChhhhhhhhcCccchhhhhhHHHhhc-cCCcchhHHhhCCchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFK-GAELTLWETVHGIKFW 79 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~g~~~~ 79 (283)
||+|+++|+|++... +++.|++|+.+++|.+++|.++.+++.+..++..+..|.+|+++++ +|. ++|+..+|.++|
T Consensus 75 Lr~L~~~gll~~~~~--~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~ 151 (352)
T 1fp2_A 75 MRYLAHNGFFEIITK--EEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFW 151 (352)
T ss_dssp HHHHHHTTSEEEEES--SSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHH
T ss_pred HHHHHhCCeEEEecC--CCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHH
Confidence 588999999998820 0589999999999998888889999988766667889999999999 665 789999999999
Q ss_pred hHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 80 EFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 80 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
+++.++|+..+.|...|........+. ++ .+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 152 ~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~-~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 229 (352)
T 1fp2_A 152 DFLDKNPEYNTSFNDAMASDSKLINLA-LR-DCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG 229 (352)
T ss_dssp HHHHHCHHHHHHHHHHHHHTHHHHHHH-HH-TCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC
T ss_pred HHHHhChHHHHHHHHHHHhcchhhhhH-HH-hcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc
Confidence 999999999999999999888776666 77 7733377889999999999999999999999999999999999998887
Q ss_pred CCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc
Q 023384 160 ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 239 (283)
Q Consensus 160 ~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~ 239 (283)
..+++++.+|+++++|.||+|+++++||+|+++++.++|++++++|+|+++||+++|.|...++....+........+++
T Consensus 230 ~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~ 309 (352)
T 1fp2_A 230 SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV 309 (352)
T ss_dssp BTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccH
Confidence 66799999999988888999999999999999999999999999999721159999999998765432111122346677
Q ss_pred ccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 240 VMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 240 ~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
.|+. .++++|+.++|+++++++||+.+++++.++..++||++|
T Consensus 310 ~~~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 310 NMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHh-ccCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 7776 568899999999999999999999999888889999987
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=307.41 Aligned_cols=281 Identities=48% Similarity=0.835 Sum_probs=239.6
Q ss_pred CccccccCeeEee-----c-cCCCCceEecchhcchhhcCCCCChhhhhhhhcCccchhhhhhHHHhhccCC-cchhHHh
Q 023384 1 MRLLVHSGCFKKT-----K-VNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAE-LTLWETV 73 (283)
Q Consensus 1 Lr~L~~~g~l~~~-----~-~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~ 73 (283)
||+|+++|+|++. + .++.++.|++|+.+++|+++++.++++++.+..++..+..|.+|++++++++ .++|+..
T Consensus 69 Lr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~ 148 (358)
T 1zg3_A 69 LRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECA 148 (358)
T ss_dssp HHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHH
T ss_pred HHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHH
Confidence 6899999999987 2 1000278999999999998888889999988766667889999999999883 2789989
Q ss_pred hCCchhhHhhcCccHHH--HHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech
Q 023384 74 HGIKFWEFMNQNPGINQ--RFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLP 151 (283)
Q Consensus 74 ~g~~~~~~~~~~~~~~~--~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~ 151 (283)
+|.++|+++.++|+..+ .|+..|........ .+++ .+++.+++..+|||||||+|.++..+++++|+++++++|+|
T Consensus 149 ~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~-~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~ 226 (358)
T 1zg3_A 149 TGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQ-ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP 226 (358)
T ss_dssp HSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHHH-HTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECH
T ss_pred hCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHHH-hcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccH
Confidence 99999999999999999 99999998877666 7777 77333777899999999999999999999999999999999
Q ss_pred HHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhh
Q 023384 152 HVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231 (283)
Q Consensus 152 ~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~ 231 (283)
.+++.+++..+++++.+|+++++|.||+|+++++||+|+|+++.++|++++++|+|+++||+++|+|...++....+...
T Consensus 227 ~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~ 306 (358)
T 1zg3_A 227 QVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT 306 (358)
T ss_dssp HHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHH
T ss_pred HHHhhcccCCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhh
Confidence 99988887667999999999988889999999999999999999999999999997111599999999987765431111
Q ss_pred hhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
.....+++.|+...++++|+.++|+++|+++||+++++++.++..++||++|
T Consensus 307 ~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 307 ELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred hHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 2345677877776789999999999999999999999999888889999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=310.39 Aligned_cols=264 Identities=24% Similarity=0.353 Sum_probs=231.7
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCCCCChhhhhhhhcCccch-hhhhhHHHhhccCCcchhHHhhCCchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFV-APYQSLSSWFKGAELTLWETVHGIKFW 79 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~g~~~~ 79 (283)
||+|++.|+|++++ ++.|++|+.++.|.++++.++.+++.+..+...+ ..|.+|+++++++. ++|...+|.++|
T Consensus 59 Lr~l~~~gl~~~~~----~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~ 133 (332)
T 3i53_A 59 LRHLVAVGLFTRDG----QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFW 133 (332)
T ss_dssp HHHHHHTTSEEECT----TSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHH
T ss_pred HHHHHhCCcEEecC----CCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHH
Confidence 68899999999986 6899999999988888877888888876543345 78999999999987 678888999999
Q ss_pred hHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 80 EFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 80 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
+++.++|+..+.|...|........+.+++ .++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++
T Consensus 134 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~-~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 210 (332)
T 3i53_A 134 EDLGSDPVLSASFDTLMSHHLELDYTGIAA-KYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHR 210 (332)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTGGG-SSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhHHhhHHHHHH-hCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHH
Confidence 999999999999999999887766666777 666 66778999999999999999999999999999999888877764
Q ss_pred -------CCCeEEEEcCCCCCCC-CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhh
Q 023384 160 -------ADNLKYIAGDMFQFIP-PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT 231 (283)
Q Consensus 160 -------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~ 231 (283)
.+|++|+.+|+++++| +||+|+++++||+|+++++.++|++++++|+| ||+++|.|.+.++. .+
T Consensus 211 ~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~--~~--- 282 (332)
T 3i53_A 211 RFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE--HA--- 282 (332)
T ss_dssp HHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC-----C---
T ss_pred hhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC--Cc---
Confidence 4789999999998777 69999999999999999999999999999999 89999999988766 21
Q ss_pred hhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 232 ETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
...+++.|+...++++||.+||+++|+++||+++++++.++ .++||++|
T Consensus 283 --~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 283 --GTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp --CHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred --cHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 24677788777889999999999999999999999999888 99999985
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=303.60 Aligned_cols=276 Identities=29% Similarity=0.501 Sum_probs=223.7
Q ss_pred CccccccCeeEee----ccCCC--CceEecchhcchhhcCCC-CChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHh
Q 023384 1 MRLLVHSGCFKKT----KVNGQ--EEAYGLTAASTLLIKDKP-YCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETV 73 (283)
Q Consensus 1 Lr~L~~~g~l~~~----~~~~~--~~~y~~t~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 73 (283)
||+|+++|+|++. +. | .+.|++|+.+++|.++++ .++++++.+..++..+..|.+|+++++++..++|+..
T Consensus 89 Lr~L~~~gll~~~~~~~~~--g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~ 166 (372)
T 1fp1_D 89 LRLLASYSVLTSTTRTIED--GGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNV 166 (372)
T ss_dssp HHHHHHTTSEEEEEEECTT--SCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC-------
T ss_pred HHHHhhCCceEecccccCC--CCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHH
Confidence 6899999999987 21 1 258999999999998877 6889998887666678899999999999833788888
Q ss_pred hCCchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHH
Q 023384 74 HGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHV 153 (283)
Q Consensus 74 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~ 153 (283)
+|.++|+++.++|+..+.|...|..........+++ .++ .+++..+|||||||+|.++..+++++|+++++++|+|.+
T Consensus 167 ~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~-~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~ 244 (372)
T 1fp1_D 167 HGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE-IYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV 244 (372)
T ss_dssp -------CCSSCHHHHHHHHHHHHHHHHHHHHHHHH-HCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred hCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHH-Hhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHH
Confidence 999999999999999999999999888777777887 664 256778999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhh
Q 023384 154 VANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTET 233 (283)
Q Consensus 154 ~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~ 233 (283)
++.+++..+++++.+|+++++|.||+|++.++||+|+++++.++|++++++|+| ||+++|.|...++....+.....
T Consensus 245 ~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~ 321 (372)
T 1fp1_D 245 IENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKL 321 (372)
T ss_dssp HTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHH
T ss_pred HHhhhhcCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHH
Confidence 998887678999999999987789999999999999999999999999999999 89999999998776432100012
Q ss_pred hhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc-CCcceEEEEeC
Q 023384 234 KFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI-FGMRFLIEIYP 283 (283)
Q Consensus 234 ~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 283 (283)
....++.|+...++++|+.++|+++|+++||+++++.+. ++..++||++|
T Consensus 322 ~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 322 VSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 346677776656789999999999999999999999884 55249999987
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=300.15 Aligned_cols=264 Identities=26% Similarity=0.419 Sum_probs=232.3
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCCCCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchhh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWE 80 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~ 80 (283)
||+|++.|+|++.+ ++.|++|+.++.|. ++|.++.+++.+..++.. ..|.+|+++++++. ++|+..+|.++|+
T Consensus 62 Lr~L~~~g~l~~~~----~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~ 134 (334)
T 2ip2_A 62 MRLLVAFEIFQGDT----RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYS 134 (334)
T ss_dssp HHHHHHTTSEEEET----TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHH
T ss_pred HHHHHhCCceEecC----CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHH
Confidence 68999999999986 58999999999888 777788999888765444 88999999999987 7888889999999
Q ss_pred HhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-
Q 023384 81 FMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE- 159 (283)
Q Consensus 81 ~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~- 159 (283)
++.++|+..+.|...| ..+....+.+++ .++ +++ .+|||||||+|..+..+++++|+.+++++|++.+++.+++
T Consensus 135 ~~~~~~~~~~~f~~~m-~~~~~~~~~~~~-~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 209 (334)
T 2ip2_A 135 YLKRCPDAGRRFLLAM-KASNLAFHEIPR-LLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDN 209 (334)
T ss_dssp HHHHCHHHHHHHHHHH-GGGHHHHHHHHH-HSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHH
T ss_pred HHhhChHHHHHHHHHH-HHHHHHHHHHHH-hCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHH
Confidence 9999999999999999 887777788888 777 677 9999999999999999999999999999999777776654
Q ss_pred ------CCCeEEEEcCCCCCCCC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhh
Q 023384 160 ------ADNLKYIAGDMFQFIPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE 232 (283)
Q Consensus 160 ------~~rv~~~~~d~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~ 232 (283)
.++++++.+|+++++|. ||+|++.+++|+|+++++.++|++++++|+| ||+++|.|...++.... .
T Consensus 210 ~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~ 282 (334)
T 2ip2_A 210 LSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----P 282 (334)
T ss_dssp THHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----H
T ss_pred HhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----c
Confidence 47899999999997765 9999999999999999999999999999999 89999999988765432 1
Q ss_pred hhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 233 TKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
....+++.|+...++++|+.++|+++++++||+++++.+.++..++|+++|
T Consensus 283 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 283 MSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred hhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 234667777766789999999999999999999999999888899999986
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=285.66 Aligned_cols=268 Identities=21% Similarity=0.359 Sum_probs=230.3
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCCCCChhhhhhhhcCcc-chhhhhhHHHhhccCCcchhHHhhCCchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPF-FVAPYQSLSSWFKGAELTLWETVHGIKFW 79 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 79 (283)
||+|++.|+|++.. ++.|++|+.+++|.++++.++..++.+..++. .+..|.+|.+.++++. .+++..+|.++|
T Consensus 73 L~~L~~~g~~~~~~----~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~ 147 (360)
T 1tw3_A 73 IRHLVAIGLLEEDA----PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFY 147 (360)
T ss_dssp HHHHHHTTSEEEEE----TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHH
T ss_pred HHHHHHCCCEEecC----CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHH
Confidence 68899999999975 68999999999999888888888887765433 5688999999999987 567888899999
Q ss_pred hHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 80 EFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 80 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
+++..+|+....|...|........+.+++ .++ +....+|||||||+|.++..+++++|+++++++|++.+++.+++
T Consensus 148 ~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~-~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~ 224 (360)
T 1tw3_A 148 EDLAGRPDLRASFDSLLACDQDVAFDAPAA-AYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARS 224 (360)
T ss_dssp HHHHTCHHHHHHHHHHHTTTTTTTTHHHHH-HSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhHHHHHH-hCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHH
Confidence 999999999999999999887777778888 777 77788999999999999999999999999999999777776653
Q ss_pred -------CCCeEEEEcCCCCCCCC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee-cCCCccchhh
Q 023384 160 -------ADNLKYIAGDMFQFIPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV-INAEEEEHEL 230 (283)
Q Consensus 160 -------~~rv~~~~~d~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~-~~~~~~~~~~ 230 (283)
.++++++.+|+++++|. ||+|++.+++|+|+++++.++|++++++|+| ||+++|.|.. .++.....
T Consensus 225 ~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~-- 299 (360)
T 1tw3_A 225 YLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFNE-- 299 (360)
T ss_dssp HHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCSH--
T ss_pred HHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCcc--
Confidence 35899999999987765 9999999999999999999999999999999 8999999988 65543221
Q ss_pred hhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCc-----ceEEEEeC
Q 023384 231 TETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGM-----RFLIEIYP 283 (283)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~~i~~~~ 283 (283)
....+++.|+...+++.++.++|+++|+++||+++++.+.++. .++|+++|
T Consensus 300 --~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 300 --QFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp --HHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred --hhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 2335677776666889999999999999999999999887655 78999975
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=286.73 Aligned_cols=268 Identities=21% Similarity=0.307 Sum_probs=226.7
Q ss_pred CccccccCeeEeeccCCCCc--eEecchhcchhhcCCCCChhhhhhhhcCccch-hhhhhHHHhhccCCcchhHHhhCCc
Q 023384 1 MRLLVHSGCFKKTKVNGQEE--AYGLTAASTLLIKDKPYCLSPTVSVFVDPFFV-APYQSLSSWFKGAELTLWETVHGIK 77 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~g~~ 77 (283)
||+|++.|+|++.. ++ .|++|+.+++|.++++.++.+++.+..++..+ ..|.+|.++++++. ++|...+|.+
T Consensus 70 Lr~L~~~Gll~~~~----~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~ 144 (374)
T 1qzz_A 70 VRHLTVVGVLEGGE----KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRP 144 (374)
T ss_dssp HHHHHHTTSEECCC----C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSC
T ss_pred HHHHhhCCCEEEeC----CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCC
Confidence 68999999999865 56 89999999999988888888888876543456 88999999999987 5688889999
Q ss_pred hhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcC
Q 023384 78 FWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANL 157 (283)
Q Consensus 78 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a 157 (283)
+|+++..+|+....|...|........+.+++ .++ ++...+|||||||+|.++..+++.+|+++++++|++.+++.+
T Consensus 145 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a 221 (374)
T 1qzz_A 145 FWEDLSADVALADSFDALMSCDEDLAYEAPAD-AYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERA 221 (374)
T ss_dssp HHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHH-TSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHH
T ss_pred HHHHHhhChHHHHHHHHHHHHhhHhHHHHHHH-hCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHH
Confidence 99999999999999999999887777777888 776 677899999999999999999999999999999998788766
Q ss_pred CC-------CCCeEEEEcCCCCCCCC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee--ecCCCccc
Q 023384 158 PE-------ADNLKYIAGDMFQFIPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI--VINAEEEE 227 (283)
Q Consensus 158 ~~-------~~rv~~~~~d~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~--~~~~~~~~ 227 (283)
++ .++++++.+|+++++|. ||+|++.+++|+|+++++.++|++++++|+| ||+++|.|. ..++....
T Consensus 222 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~ 298 (374)
T 1qzz_A 222 RRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR 298 (374)
T ss_dssp HHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H
T ss_pred HHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc
Confidence 54 35899999999987765 9999999999999999999999999999999 899999998 76654322
Q ss_pred hhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcc-----eEEEEeC
Q 023384 228 HELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMR-----FLIEIYP 283 (283)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~~i~~~~ 283 (283)
.....+++.|+...+++.++.++|.++|+++||+++++...++.. ++|+++|
T Consensus 299 ----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 299 ----FFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp ----HHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred ----chhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 123456777766668899999999999999999999999887766 9999875
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-39 Score=282.52 Aligned_cols=265 Identities=16% Similarity=0.192 Sum_probs=210.5
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCCCCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhC--Cch
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHG--IKF 78 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g--~~~ 78 (283)
||+|+++|+|+++ ++.|++|+.+++|.++++.+ .++.+. .+..++.|.+|++++++++ .++...+| .++
T Consensus 71 Lr~l~~~g~l~~~-----~~~y~~t~~s~~L~~~~~~~--~~~~~~-~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~ 141 (363)
T 3dp7_A 71 LEASLTIGTILLE-----EDRYVLAKAGWFLLNDKMAR--VNMEFN-HDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTI 141 (363)
T ss_dssp HHHHHHHTSEEEE-----TTEEEECHHHHHHHHCHHHH--HHHHHH-HHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSH
T ss_pred HHHHhhCCCeEec-----CCEEecccchHHhhCCCccc--chheee-cHHhhhhHHHHHHHHhcCC-CccccccCchHhH
Confidence 6899999999986 58999999999998876432 233333 3457899999999999987 45667788 689
Q ss_pred hhHhhcCccHHHH----HHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHH
Q 023384 79 WEFMNQNPGINQR----FNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVV 154 (283)
Q Consensus 79 ~~~~~~~~~~~~~----f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~ 154 (283)
|+++.++|+..+. |...|.... ...++. .+. ..+..+|||||||+|.++..+++++|+++++++|+|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~l~-~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 215 (363)
T 3dp7_A 142 YEGLSQLPEQVQKSWFGFDHFYSDQS---FGKALE-IVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQL 215 (363)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHTTCCC---CHHHHH-HHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHhhhhh---HHHHHH-Hhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHH
Confidence 9999999987663 666665432 123444 443 356789999999999999999999999999999998888
Q ss_pred hcCCC-------CCCeEEEEcCCCCC---CC-CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 155 ANLPE-------ADNLKYIAGDMFQF---IP-PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 155 ~~a~~-------~~rv~~~~~d~~~~---~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
+.+++ .+|++++.+|++++ +| +||+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++
T Consensus 216 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~ 292 (363)
T 3dp7_A 216 EMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDR 292 (363)
T ss_dssp HHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTS
T ss_pred HHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCC
Confidence 77664 36899999999984 66 59999999999999999999999999999999 8999999998877
Q ss_pred Cccchh-hhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCC-cceEEEEeC
Q 023384 224 EEEEHE-LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFG-MRFLIEIYP 283 (283)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 283 (283)
...... +.......++.++...++++||.+||+++|+++||+++++.+..+ ..++|+++|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 293 QRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp CSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred ccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 654321 001112333444555678899999999999999999999987755 489999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=268.96 Aligned_cols=263 Identities=19% Similarity=0.273 Sum_probs=222.7
Q ss_pred CccccccCeeEeeccCCCCceEecchhc-chhhcCCCCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAAS-TLLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFW 79 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 79 (283)
||+|++.|+|++. ++.|++|+.+ ++|.++++.++.+++.+..++..+..|.+|.++++++. ++|+ + |
T Consensus 60 L~~L~~~g~l~~~-----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~ 127 (335)
T 2r3s_A 60 CDYLVIIGFMTKQ-----AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-E 127 (335)
T ss_dssp HHHHHHTTSEEEE-----TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-T
T ss_pred HHHHHhcCCeEec-----CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-c
Confidence 6899999999986 5899999999 68888888888898888755456789999999999886 3342 3 8
Q ss_pred hHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC
Q 023384 80 EFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE 159 (283)
Q Consensus 80 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 159 (283)
+++.++++....|...|..........+++ .+++.+.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 206 (335)
T 2r3s_A 128 GTLSPEHPVWVQFAKAMSPMMANPAQLIAQ-LVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKE 206 (335)
T ss_dssp GGGSTTCTHHHHHHHHSGGGGHHHHHHHHH-HHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHhhhHHHHHH-hcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHH
Confidence 888899999999999999888777778888 7772117789999999999999999999999999999999977776654
Q ss_pred -------CCCeEEEEcCCCC-CCCC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh
Q 023384 160 -------ADNLKYIAGDMFQ-FIPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL 230 (283)
Q Consensus 160 -------~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~ 230 (283)
.++++++.+|+++ +++. ||+|++.+++|+|+++++.++|++++++|+| ||+++|+|...++....+
T Consensus 207 ~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~-- 281 (335)
T 2r3s_A 207 NARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP-- 281 (335)
T ss_dssp HHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS--
T ss_pred HHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc--
Confidence 3579999999998 6665 9999999999999999999999999999999 899999999887654332
Q ss_pred hhhhhhccccccccc-CCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEe
Q 023384 231 TETKFLFDIVMSVNA-TGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIY 282 (283)
Q Consensus 231 ~~~~~~~~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 282 (283)
.....+++.|+... +++.++.++|.++++++||+.+++.+.++..++|+++
T Consensus 282 -~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 282 -PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp -HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred -hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 12346677777665 7899999999999999999999999888777877774
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=269.74 Aligned_cols=258 Identities=16% Similarity=0.228 Sum_probs=212.6
Q ss_pred CccccccCeeEeeccCCCCceEecchhcc-hhhcCCCCChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchh
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAAST-LLIKDKPYCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFW 79 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 79 (283)
||+|+++|+|+++ ++.|++|+.++ +|.+++|.+++.++.+. ...+..|.+|++++++|.+..|+..
T Consensus 77 Lr~L~~~gll~~~-----~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------ 143 (352)
T 3mcz_A 77 LHALAALGLLTKE-----GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------ 143 (352)
T ss_dssp HHHHHHTTSEEEE-----TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------
T ss_pred HHHHHHCCCeEec-----CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------
Confidence 6899999999998 47899999997 77778888888887664 2467899999999999976554322
Q ss_pred hHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCC-CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCC
Q 023384 80 EFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEG-LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLP 158 (283)
Q Consensus 80 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~-~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 158 (283)
.++.++|+..+.|..+|...... ...+++ .++ +.+ ..+|||||||+|.++..+++++|+++++++|+|++++.++
T Consensus 144 ~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~-~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 219 (352)
T 3mcz_A 144 SRFAHDTRARDAFNDAMVRLSQP-MVDVVS-ELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAAR 219 (352)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHH-HHHHHH-TCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHH
T ss_pred cccccCHHHHHHHHHHHHhhhhh-HHHHHH-hCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHH
Confidence 23457888899999999873332 236777 777 555 8999999999999999999999999999999988877665
Q ss_pred C-------CCCeEEEEcCCCC-C--CCC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc
Q 023384 159 E-------ADNLKYIAGDMFQ-F--IPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE 227 (283)
Q Consensus 159 ~-------~~rv~~~~~d~~~-~--~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~ 227 (283)
+ .+|++++.+|+++ + .+. ||+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++....
T Consensus 220 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~ 296 (352)
T 3mcz_A 220 KTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVT 296 (352)
T ss_dssp HHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSS
T ss_pred HHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC
Confidence 3 3689999999998 4 564 9999999999999999999999999999999 89999999998876543
Q ss_pred hhhhhhhhhccccccccc-CCccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 228 HELTETKFLFDIVMSVNA-TGKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
+ .....+++.|+... ++++|+.++|+++|+++||++++.. .+...+++++|
T Consensus 297 ~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 297 P---ALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp S---HHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred C---chHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 3 22456788877654 7899999999999999999998843 35578888876
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=267.48 Aligned_cols=253 Identities=20% Similarity=0.342 Sum_probs=213.6
Q ss_pred CccccccCeeEeeccCCCCceEecchhc-chhhcCCC---CChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCC
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAAS-TLLIKDKP---YCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGI 76 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~-~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ 76 (283)
||+|++.|+|+++ ++.|++|+.+ ++|.++++ .++++++.+.. ...+..|.+|+++++++.+
T Consensus 85 Lr~L~~~gll~~~-----~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~l~~g~~--------- 149 (359)
T 1x19_A 85 LETLRQMRVINLE-----DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQKN--------- 149 (359)
T ss_dssp HHHHHHTTSEEEE-----TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHHH-HHHHHTGGGHHHHHTTSCC---------
T ss_pred HHHHHhCCCeEee-----CCeEecCHHHHHHhcCCCCCccccHHHHHHHHH-HHHHHHHHHHHHHHhcCCC---------
Confidence 6899999999998 4799999974 58888887 78888887763 4567899999999998863
Q ss_pred chhhHhhcCcc---HHHHHHHHhhhhhh-hhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechH
Q 023384 77 KFWEFMNQNPG---INQRFNEAMASDTE-ILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPH 152 (283)
Q Consensus 77 ~~~~~~~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~ 152 (283)
|+++.++|+ ..+.|...|..... .....+++ .++ +++..+|||||||+|.++..+++++|+.+++++|++.
T Consensus 150 --~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~-~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 224 (359)
T 1x19_A 150 --FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE-EAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPG 224 (359)
T ss_dssp --CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHH-HCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGG
T ss_pred --CcccccCchhhHHHHHHHHHHHHhccchhHHHHHH-hcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHH
Confidence 677788898 99999999998887 77788888 777 7788999999999999999999999999999999988
Q ss_pred HHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 153 VVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 153 ~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
+++.+++ .+|++++.+|+++ +++++|+|++.+++|+|+++++.++|++++++|+| ||+++|+|...++.
T Consensus 225 ~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~ 301 (359)
T 1x19_A 225 AIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDP 301 (359)
T ss_dssp GHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCT
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCC
Confidence 8777653 4579999999998 67778999999999999999999999999999999 89999999988765
Q ss_pred ccchhhhhhhhhcccccccc-cCCcc----CCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 225 EEEHELTETKFLFDIVMSVN-ATGKE----RTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~-~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
..+ . ..... .|+.. .++++ ++.++|+++++++||+++++.+.+ ..++|+++|
T Consensus 302 -~~~-~--~~~~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 302 -ENP-N--FDYLS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp -TSC-C--HHHHH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred -CCc-h--HHHHH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 221 1 11222 33333 34677 999999999999999999998887 788999987
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=168.74 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=124.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~ 184 (283)
.++..+|||||||+|..+..+++++ |+++++++|+ +.+++.|++ ..+|+++++|+.+ +++++|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 5677899999999999999999986 6789999999 888877654 4689999999998 788899999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc---ccc-----------cCCccC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM---SVN-----------ATGKER 250 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~---~~~-----------~~~~~~ 250 (283)
+||++++++...+|++++++||| ||++++.|...++........ ...+.++.. ... .--..+
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGELL-FNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHHHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 99999999888999999999999 899999998876654321000 000111100 000 001345
Q ss_pred CHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 251 TESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
|.+++.++|++|||+.++++.-....+.++|+|
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 889999999999999998864433344456765
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-20 Score=154.55 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=124.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC-CceEEEecccccCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGL 189 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~ 189 (283)
....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 4568999999999999999999999999999999 777766654 3489999999998 554 59999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhc------cccc------cc-ccCCccCCHHHHH
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLF------DIVM------SV-NATGKERTESEWA 256 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~------~~~~------~~-~~~~~~~t~~e~~ 256 (283)
++++...+|++++++|+| ||.+++.+...++......... ..+. .+.. +. ......++.+++.
T Consensus 123 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENLNK-TIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQL 198 (234)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHHHH-HHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhHHH-HHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHH
Confidence 998888899999999999 8999999987765532210000 0000 0000 00 0124556899999
Q ss_pred HHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 257 KLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 257 ~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
++|++|||+.+++.......+++..+|
T Consensus 199 ~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 199 NWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp HHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred HHHHHcCCCceeeeeeecceeEEEEEe
Confidence 999999999999887766666665543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-19 Score=145.36 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=124.2
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p 175 (283)
..+++ .++ .....+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 27 ~~~~~-~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 27 EKVLK-EFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHH-HHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred HHHHH-HhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence 34455 554 6677899999999999999999997 8889999999 888777664 2589999999988 655
Q ss_pred --CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHH
Q 023384 176 --PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 253 (283)
Q Consensus 176 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 253 (283)
.||+|++..++|++++. ..+|++++++|+| ||.+++.+.........+ .....++.+
T Consensus 104 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~----------------~~~~~~~~~ 162 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGP----------------PPEEVYSEW 162 (219)
T ss_dssp SSCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSC----------------CGGGSCCHH
T ss_pred CCCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCC----------------chhcccCHH
Confidence 39999999999999875 4889999999999 799999886655442221 012345899
Q ss_pred HHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 254 EWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
++.++++++||+++++.........+.++|
T Consensus 163 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 163 EVGLILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 999999999999999988877666676664
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-19 Score=148.78 Aligned_cols=163 Identities=17% Similarity=0.099 Sum_probs=118.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC-CceEEEecc-cccCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP-PADAFLFKL-VFHGLG 190 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p-~~D~v~~~~-vlh~~~ 190 (283)
.+...+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. +||+++
T Consensus 48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~ 125 (263)
T 3pfg_A 48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA 125 (263)
T ss_dssp CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence 4566899999999999999999884 48999999 888887765 5589999999998 555 499999998 999996
Q ss_pred h-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh------------h--------hhhhhhccccccccc-C--
Q 023384 191 D-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE------------L--------TETKFLFDIVMSVNA-T-- 246 (283)
Q Consensus 191 d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~------------~--------~~~~~~~~~~~~~~~-~-- 246 (283)
+ ++..++|++++++|+| ||.+++.+...++...... . .......++.++... +
T Consensus 126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 5 5677999999999999 6887775443332210000 0 000001111211111 1
Q ss_pred ---------CccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 247 ---------GKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 247 ---------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
.+.++.++|.++|+++||+++++........+++++|
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999998877666677777765
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=147.57 Aligned_cols=161 Identities=14% Similarity=0.179 Sum_probs=116.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
+....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 113 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 113 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCch
Confidence 34468999999999999999999877 8999999 888877664 3789999999988 655 49999999998
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch--h-hhhhhhhcccccccccC-----------------
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH--E-LTETKFLFDIVMSVNAT----------------- 246 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~----------------- 246 (283)
|.+..++..++|++++++|+| ||.+++.+...+...... . ......+... ++....
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 1ve3_A 114 VHFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRLKESLVVGQKYWISK-VIPDQEERTVVIEFKSEQDSFRV 189 (227)
T ss_dssp GGCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGCCC---------CCE-EEEETTTTEEEEEC-----CCEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHHHhhhhcccceeecc-cccCccccEEEEEeccchhhhee
Confidence 877877788999999999999 799988876532211000 0 0000000000 000000
Q ss_pred -CccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 247 -GKERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 247 -~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
...++ .++.++|+++||+.+++........+|+.+|
T Consensus 190 ~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 190 RFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp EEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred ehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 11122 4899999999999999999877778888875
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=145.09 Aligned_cols=162 Identities=16% Similarity=0.229 Sum_probs=118.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-CCC-CceEEEecccccCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLG 190 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~ 190 (283)
.....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|+++
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 43 NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT 120 (220)
T ss_dssp HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCC
Confidence 446689999999999999999987 679999999 777777665 2489999999998 554 599999999999999
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc--cCCccCCHHHHHHHHHHCCCCeee
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN--ATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
+++...+|++++++|+| ||.+++.+...+................+..... ......+.+++.++|+++||+++.
T Consensus 121 ~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 197 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTF 197 (220)
T ss_dssp HHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEE
T ss_pred hHHHHHHHHHHHHhcCC---CCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEE
Confidence 99877799999999999 7999999876654322110000000000000000 112344899999999999998665
Q ss_pred EEEcCCcceEEEEeC
Q 023384 269 ITPIFGMRFLIEIYP 283 (283)
Q Consensus 269 ~~~~~~~~~~i~~~~ 283 (283)
+. ......++++.|
T Consensus 198 ~~-~~~~~w~~~~~~ 211 (220)
T 3hnr_A 198 TR-LNHFVWVMEATK 211 (220)
T ss_dssp EE-CSSSEEEEEEEE
T ss_pred ee-ccceEEEEeehh
Confidence 54 456777877754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=146.65 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=112.4
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecccccCC
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~ 189 (283)
+|||||||+|.++..+++. |+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 124 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW 124 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence 9999999999999999999 8899999999 777776654 3589999999998 665 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhh--hhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTET--KFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
++.. .+|++++++|+| ||.+++.+...+...... .... .....+..........++.++|.++|+++||+.+
T Consensus 125 ~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 198 (219)
T 3dlc_A 125 EDVA--TAFREIYRILKS---GGKTYIGGGFGNKELRDS-ISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSY 198 (219)
T ss_dssp SCHH--HHHHHHHHHEEE---EEEEEEEECCSSHHHHHH-HHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSE
T ss_pred cCHH--HHHHHHHHhCCC---CCEEEEEeccCcHHHHHH-HHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeE
Confidence 7654 789999999999 799888875543321110 0000 0000001000012334578999999999999999
Q ss_pred eEEEcCCcceEEE
Q 023384 268 KITPIFGMRFLIE 280 (283)
Q Consensus 268 ~~~~~~~~~~~i~ 280 (283)
++........++.
T Consensus 199 ~~~~~~~~~~~~~ 211 (219)
T 3dlc_A 199 EIILGDEGFWIII 211 (219)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEecCCceEEEE
Confidence 9987765555444
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-18 Score=138.53 Aligned_cols=152 Identities=18% Similarity=0.253 Sum_probs=110.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCCCCC--CceEEEecccccCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQFIP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~~ 190 (283)
.....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++|+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 455679999999999999999998 679999999 888877765 3789999999988433 499999999999999
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccC------CccCCHHHHHHHHHHCCC
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNAT------GKERTESEWAKLFFDACF 264 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~ll~~aGf 264 (283)
+++...+|++++++|+| ||.+++.+...+...... .........+......+ ....+.+++.++++++||
T Consensus 122 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 197 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQ-QDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW 197 (218)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccch-hhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCC
Confidence 98888999999999999 799999887664322110 00000000000000011 224599999999999999
Q ss_pred CeeeEEEcCC
Q 023384 265 SHYKITPIFG 274 (283)
Q Consensus 265 ~~~~~~~~~~ 274 (283)
++. ......
T Consensus 198 ~v~-~~~~~~ 206 (218)
T 3ou2_A 198 SCS-VDEVHP 206 (218)
T ss_dssp EEE-EEEEET
T ss_pred EEE-eeeccc
Confidence 954 444433
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=142.02 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=117.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC-CceEEEe-cccccCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP-PADAFLF-KLVFHGLG 190 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p-~~D~v~~-~~vlh~~~ 190 (283)
.....+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++|++.
T Consensus 38 ~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~ 115 (239)
T 3bxo_A 38 TPEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLK 115 (239)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCC
T ss_pred cCCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcC
Confidence 35668999999999999999999976 8999999 888877765 5679999999988 554 4999995 55999885
Q ss_pred h-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh------------h--------hhhhhccccccccc-CC-
Q 023384 191 D-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL------------T--------ETKFLFDIVMSVNA-TG- 247 (283)
Q Consensus 191 d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~------------~--------~~~~~~~~~~~~~~-~~- 247 (283)
+ ++..++|++++++|+| ||.+++.+...++....... . .......+.++... ++
T Consensus 116 ~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T 3bxo_A 116 TTEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKG 192 (239)
T ss_dssp SHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred CHHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCc
Confidence 4 6778999999999999 78887766554433211000 0 00001111111111 11
Q ss_pred ----------ccCCHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 248 ----------KERTESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 248 ----------~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
+.+|.++|+++|+++||++..+....+...+++|+|
T Consensus 193 ~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 193 VRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred ceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346999999999999997776655556678888876
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=143.90 Aligned_cols=155 Identities=17% Similarity=0.136 Sum_probs=118.2
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p 175 (283)
..+++ .++ .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 51 ~~l~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 51 DEMIA-LLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHH-HSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHH-hcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 44555 554 5677899999999999999999987 689999999 777766653 3589999999998 665
Q ss_pred --CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHH
Q 023384 176 --PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 253 (283)
Q Consensus 176 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 253 (283)
.||+|++..++|++++. ..+|++++++|+| ||++++.+.......... . ....+........+..++.+
T Consensus 127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~ 197 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEGA-K---KEAVDAFRAGGGVLSLGGID 197 (273)
T ss_dssp TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCHH-H---HHHHHHHHHHHTCCCCCCHH
T ss_pred CCCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCChh-H---HHHHHHHHhhcCccCCCCHH
Confidence 49999999999999876 4889999999999 899999998765432221 0 00111100111245678999
Q ss_pred HHHHHHHHCCCCeeeEEEc
Q 023384 254 EWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~~~~ 272 (283)
++.++++++||+++++...
T Consensus 198 ~~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 198 EYESDVRQAELVVTSTVDI 216 (273)
T ss_dssp HHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHcCCeEEEEEEC
Confidence 9999999999999887665
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=144.84 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=116.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
.....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAIL 131 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHH
Confidence 5667899999999999999999987 789999999 777776654 2689999999998 665 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
++++++...+|++++++|+| ||.+++.+...+...... . .+.. .....+...++.+++.++++++||+++
T Consensus 132 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 201 (266)
T 3ujc_A 132 ALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D--EFKE--YVKQRKYTLITVEEYADILTACNFKNV 201 (266)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H--HHHH--HHHHHTCCCCCHHHHHHHHHHTTCEEE
T ss_pred hcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H--HHHH--HHhcCCCCCCCHHHHHHHHHHcCCeEE
Confidence 99888888999999999999 899999998776522111 0 0000 000123446789999999999999999
Q ss_pred eEEEc
Q 023384 268 KITPI 272 (283)
Q Consensus 268 ~~~~~ 272 (283)
++...
T Consensus 202 ~~~~~ 206 (266)
T 3ujc_A 202 VSKDL 206 (266)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 87764
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=144.71 Aligned_cols=153 Identities=13% Similarity=0.280 Sum_probs=115.6
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p 175 (283)
...+++ .++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 26 ~~~l~~-~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 26 LAKLMQ-IAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHH-HHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHH-HhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 344555 554 56778999999999999999999875 8999999 888777654 2579999999988 765
Q ss_pred --CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-ccccc-cCCccCC
Q 023384 176 --PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSVN-ATGKERT 251 (283)
Q Consensus 176 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~t 251 (283)
.||+|++..++|+++|.. .+|++++++|+| ||.+++.+...++..... .+... ..+.. .....++
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 169 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDAFD------VFYNYVEKERDYSHHRAWK 169 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHHHH------HHHHHHHHHHCTTCCCCCB
T ss_pred CCCEEEEEEhhhhHhcCCHH--HHHHHHHHHcCC---CCEEEEEEcCCCCCHHHH------HHHHHHHHhcCccccCCCC
Confidence 499999999999998865 889999999999 899999888766542211 01111 11111 1235678
Q ss_pred HHHHHHHHHHCCCCeeeEEEc
Q 023384 252 ESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~~~~~ 272 (283)
.++|.++|+++||+++++...
T Consensus 170 ~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 170 KSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEEe
Confidence 999999999999998876543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=144.58 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=112.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|
T Consensus 91 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 169 (254)
T 1xtp_A 91 GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI 169 (254)
T ss_dssp TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence 4567899999999999999999886 567999999 777776654 2679999999987 655 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
++++++...+|++++++|+| ||.+++.+......... .+ .......++.++|.++|+++||+++
T Consensus 170 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~l~~aGf~~~ 233 (254)
T 1xtp_A 170 YLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VD----KEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EE----TTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccce---------ec----ccCCcccCCHHHHHHHHHHCCCEEE
Confidence 99988889999999999999 79999988654332111 00 0012335689999999999999999
Q ss_pred eEEEcC
Q 023384 268 KITPIF 273 (283)
Q Consensus 268 ~~~~~~ 273 (283)
++....
T Consensus 234 ~~~~~~ 239 (254)
T 1xtp_A 234 KEAFQE 239 (254)
T ss_dssp EEEECT
T ss_pred EeeecC
Confidence 887654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.2e-18 Score=144.14 Aligned_cols=144 Identities=17% Similarity=0.248 Sum_probs=112.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
+....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 5677899999999999999999987 469999999 777776654 3689999999998 765 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
++|++++. ..+|++++++||| ||++++.+...++..... ......... ......+.+++.++++++||
T Consensus 159 ~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~l~~aGf 226 (297)
T 2o57_A 159 AFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMGSLGLYRSLAKECGL 226 (297)
T ss_dssp CGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCCCHHHHHHHHHHTTE
T ss_pred hhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCCCHHHHHHHHHHCCC
Confidence 99999884 5889999999999 899999998766543221 001111100 11234589999999999999
Q ss_pred CeeeEEEc
Q 023384 265 SHYKITPI 272 (283)
Q Consensus 265 ~~~~~~~~ 272 (283)
+++++...
T Consensus 227 ~~~~~~~~ 234 (297)
T 2o57_A 227 VTLRTFSR 234 (297)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEEC
Confidence 99988764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-18 Score=141.36 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=115.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p 175 (283)
..+++ .+. .....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~-~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 101 (256)
T 1nkv_A 26 ATLGR-VLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 101 (256)
T ss_dssp HHHHH-HTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHH-hcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence 34444 444 5677899999999999999999988 679999999 888777654 3589999999988 443
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHH
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 254 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 254 (283)
.||+|++..++|++++. .++|++++++||| ||++++.+...........+. ..+. .......++.++
T Consensus 102 ~~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~ 169 (256)
T 1nkv_A 102 EKCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATEEIA--QACG-----VSSTSDFLTLPG 169 (256)
T ss_dssp SCEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSHHHH--HTTT-----CSCGGGSCCHHH
T ss_pred CCCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChHHHH--HHHh-----cccccccCCHHH
Confidence 49999999999999875 4789999999999 899999987765443221000 0000 011124568999
Q ss_pred HHHHHHHCCCCeeeEEEc
Q 023384 255 WAKLFFDACFSHYKITPI 272 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~~~~ 272 (283)
|.++++++||+++++...
T Consensus 170 ~~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 170 LVGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHHTTTBCCCEEEEC
T ss_pred HHHHHHHCCCeeEEEEeC
Confidence 999999999999887543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=147.54 Aligned_cols=164 Identities=11% Similarity=0.021 Sum_probs=117.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHH-HHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIIS-EAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~ 184 (283)
+....+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5677899999999999999986 6789999999999 877776654 3469999999998 555 499999999
Q ss_pred cccCCChhH-HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhh--h------h--hccccccccc-CCccCCH
Q 023384 185 VFHGLGDED-GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTET--K------F--LFDIVMSVNA-TGKERTE 252 (283)
Q Consensus 185 vlh~~~d~~-~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~--~------~--~~~~~~~~~~-~~~~~t~ 252 (283)
++|++++.+ ...+|++++++|+| ||.+++.+...+...... .... . . ...+...... ....++.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPD-SPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTH 271 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTT-CCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCccccc-ccceeeccccchhhhhhhHHHHHHhhhhhccCCH
Confidence 999996654 45789999999999 788888776544322110 0000 0 0 0000000000 1134799
Q ss_pred HHHHHHHHHCCCCeeeEEEcC-CcceEEEEeC
Q 023384 253 SEWAKLFFDACFSHYKITPIF-GMRFLIEIYP 283 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 283 (283)
+++.++|+++||+++++.... .....++++|
T Consensus 272 ~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 272 AQTRAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999999999988653 3445666665
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-18 Score=137.50 Aligned_cols=145 Identities=16% Similarity=0.107 Sum_probs=114.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--CceEEEecccccCCChhH
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDED 193 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~ 193 (283)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 589999999999999999988 568999999 888877765 6689999999988 654 499999999999999777
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 194 GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 194 ~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
...+|++++++|+| ||.+++.+...+..... .. .......++.+++.++|+++||+++++...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGPSLEPM---------YH----PVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCSSCEEE---------CC----SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCCchhhh---------hc----hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 88999999999999 78888877544331111 00 0012345689999999999999999988765
Q ss_pred C-cceEEEE
Q 023384 274 G-MRFLIEI 281 (283)
Q Consensus 274 ~-~~~~i~~ 281 (283)
. ++..+..
T Consensus 184 ~~p~~~l~~ 192 (203)
T 3h2b_A 184 RFPHAYLTA 192 (203)
T ss_dssp TSSEEEEEE
T ss_pred CCcchhhhh
Confidence 4 4554443
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-17 Score=136.03 Aligned_cols=143 Identities=17% Similarity=0.189 Sum_probs=109.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC--CceEEEecccccC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHG 188 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~ 188 (283)
++...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++|+
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 456789999999999999999998 679999999 777777655 5789999999998 654 4999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
+++.. .+|++++++|+| ||.+++.+.......... .+... .-.......++.+++.++++++||++++
T Consensus 129 ~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 129 TEEPL--RALNEIKRVLKS---DGYACIAILGPTAKPREN------SYPRL-YGKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp SSCHH--HHHHHHHHHEEE---EEEEEEEEECTTCGGGGG------GGGGG-GTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCHH--HHHHHHHHHhCC---CeEEEEEEcCCcchhhhh------hhhhh-ccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 97764 789999999999 788888775433222111 01111 0011134557899999999999999998
Q ss_pred EEEc
Q 023384 269 ITPI 272 (283)
Q Consensus 269 ~~~~ 272 (283)
+...
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 7644
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=138.60 Aligned_cols=153 Identities=17% Similarity=0.302 Sum_probs=115.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p- 175 (283)
...++ .++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 11 ~~~~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 11 GLMIK-TAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHH-HHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred chHHH-HhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 33444 444 67789999999999999999999875 8999999 777776654 2679999999988 655
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc-ccCCccCCHH
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-NATGKERTES 253 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~ 253 (283)
.||+|++..++|++++.. .+|++++++|+| ||.+++.+...+...... . ....+..+. ......++.+
T Consensus 86 ~~fD~v~~~~~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~ 155 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDVR--KAVREVARVLKQ---DGRFLLVDHYAPEDPVLD---E--FVNHLNRLRDPSHVRESSLS 155 (239)
T ss_dssp TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECBCSSHHHH---H--HHHHHHHHHCTTCCCCCBHH
T ss_pred CcEEEEEECCchhhccCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCChhHH---H--HHHHHHHhccccccCCCCHH
Confidence 499999999999998754 889999999999 799999988766542111 0 000001110 1124567899
Q ss_pred HHHHHHHHCCCCeeeEEEc
Q 023384 254 EWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~~~~ 272 (283)
+|.++|+++||+++++...
T Consensus 156 ~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 156 EWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEEee
Confidence 9999999999998877553
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=141.96 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=118.2
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p 175 (283)
..+++ .++ .....+|||||||+|.++..+++.++ .+++++|+ +++++.+++ ..+++++.+|+.+ + .
T Consensus 54 ~~~~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~ 128 (287)
T 1kpg_A 54 DLALG-KLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-E 128 (287)
T ss_dssp HHHHT-TTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-C
T ss_pred HHHHH-HcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C
Confidence 33445 444 56678999999999999999997775 49999999 777776653 3589999999976 4 5
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch----hhh-hhhhhcccc-cccccCCcc
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH----ELT-ETKFLFDIV-MSVNATGKE 249 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~----~~~-~~~~~~~~~-~~~~~~~~~ 249 (283)
.||+|++..++|++++++...+|++++++||| ||++++.+...+...... +.. ......++. .....++..
T Consensus 129 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (287)
T 1kpg_A 129 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL 205 (287)
T ss_dssp CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred CeeEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCC
Confidence 69999999999999877778999999999999 899999988765432200 000 000011110 011134566
Q ss_pred CCHHHHHHHHHHCCCCeeeEEEc
Q 023384 250 RTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 250 ~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
++.+++.++++++||+++++...
T Consensus 206 ~s~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 206 PSIPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCHHHHHHHHHhCCcEEEEEEeC
Confidence 79999999999999999988764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=143.35 Aligned_cols=152 Identities=16% Similarity=0.277 Sum_probs=113.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
+....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 45678999999999999999999999999999999 777776654 3579999999998 554 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhh-hhcccc-cccccCCccCCHHHHHHHHHHCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETK-FLFDIV-MSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
+|++++.. .+|++++++|+| ||.+++.+.........+...... .+..+. .....++..++..++.++|+++|
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 189 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG 189 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence 99999875 889999999999 799999885442221111000000 111111 11123456667889999999999
Q ss_pred CCeeeEEEc
Q 023384 264 FSHYKITPI 272 (283)
Q Consensus 264 f~~~~~~~~ 272 (283)
|+++++...
T Consensus 190 f~~v~~~~~ 198 (276)
T 3mgg_A 190 FEKIRVEPR 198 (276)
T ss_dssp CEEEEEEEE
T ss_pred CCeEEEeeE
Confidence 999887644
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=139.48 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCc---cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCCC------------C--C
Q 023384 118 GLGSLVDVGGGN---GSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQF------------I--P 175 (283)
Q Consensus 118 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~------------~--p 175 (283)
+..+|||||||+ |.++..+++.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 888887764 47899999999862 2 3
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
.+|+|++..+||++++++...+|++++++|+| ||.+++.+...+. ... . ....+...........++.+|+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~s~~ei 227 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG--LPA-Q---QKLARITRENLGEGWARTPEEI 227 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS--CHH-H---HHHHHHHHHHHSCCCCBCHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc--hHH-H---HHHHHHHHhcCCCCccCCHHHH
Confidence 58999999999999998888999999999999 8999998876532 110 1 1111111111124567899999
Q ss_pred HHHHHHCCCCeee
Q 023384 256 AKLFFDACFSHYK 268 (283)
Q Consensus 256 ~~ll~~aGf~~~~ 268 (283)
.++| +||++++
T Consensus 228 ~~~l--~G~~l~~ 238 (274)
T 2qe6_A 228 ERQF--GDFELVE 238 (274)
T ss_dssp HHTT--TTCEECT
T ss_pred HHHh--CCCeEcc
Confidence 9999 6998775
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-17 Score=140.57 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=118.4
Q ss_pred hhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEE
Q 023384 96 MASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIA 167 (283)
Q Consensus 96 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~ 167 (283)
+..........+++ .++ .+....+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.
T Consensus 97 ~~~~~~~~~~~l~~-~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 173 (312)
T 3vc1_A 97 LHRLESAQAEFLMD-HLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRV 173 (312)
T ss_dssp HHHHHHHHHHHHHT-TSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred hhhHHHHHHHHHHH-Hhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 33333333344454 332 14567899999999999999999986 679999999 888876654 35899999
Q ss_pred cCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 168 GDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 168 ~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
+|+.+ +++ .||+|++..++|+++ ...+|++++++|+| ||++++.+....+..... . .......-..
T Consensus 174 ~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~-~-~~~~~~~~~~--- 242 (312)
T 3vc1_A 174 CNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP-S-KWVSQINAHF--- 242 (312)
T ss_dssp CCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC-C-HHHHHHHHHH---
T ss_pred CChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch-h-HHHHHHHhhh---
Confidence 99998 665 499999999999994 56889999999999 899999987776543111 0 0000111000
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
....++.++|.++++++||+++++...
T Consensus 243 -~~~~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 243 -ECNIHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp -TCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred -cCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 123668999999999999999988764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=142.22 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=112.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C----CCeEEEEcCCCC-CCC-CceEEEe-cc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----A----DNLKYIAGDMFQ-FIP-PADAFLF-KL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~----~rv~~~~~d~~~-~~p-~~D~v~~-~~ 184 (283)
...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +.+ .||+|++ ..
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSG 159 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHH
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCc
Confidence 3459999999999999999988 578999999 888877765 1 689999999998 655 4998886 47
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch-----hhhh-hhh-------------hccccccc--
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH-----ELTE-TKF-------------LFDIVMSV-- 243 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~-----~~~~-~~~-------------~~~~~~~~-- 243 (283)
++|++++++...+|++++++|+| ||++++.....+.....+ .+.. ... ...+....
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 236 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPAD 236 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESC
T ss_pred ccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEecc
Confidence 88888888889999999999999 788777664433210000 0000 000 00000000
Q ss_pred ---------ccCCccCCHHHHHHHHHHCCCCeeeEEEcCC------cceEEEEe
Q 023384 244 ---------NATGKERTESEWAKLFFDACFSHYKITPIFG------MRFLIEIY 282 (283)
Q Consensus 244 ---------~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~~i~~~ 282 (283)
....+.++.+++.++|+++||+++++.+... ...++++.
T Consensus 237 ~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 237 ETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp C--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred CCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0012246999999999999999999987742 24577765
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.5e-18 Score=132.10 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=112.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCCCceEEEecccccCCChh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDE 192 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~ 192 (283)
.....+|||||||+|.++..+++... +++++|+ +.+++.+++ ..++++..+| .. +...||+|++..++|++++.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~~~ 91 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFANSFHDMDDK 91 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEESCSTTCSCH
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEccchhcccCH
Confidence 56678999999999999999999874 9999999 777777765 6789999999 32 22359999999999999775
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
..+|++++++|+| ||++++.+.........++ ....++.+++.++++ ||+++++...
T Consensus 92 --~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 92 --QHVISEVKRILKD---DGRVIIIDWRKENTGIGPP----------------LSIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp --HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSSC----------------GGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred --HHHHHHHHHhcCC---CCEEEEEEcCccccccCch----------------HhhhcCHHHHHHHHh--CcEEEEccCC
Confidence 4889999999999 7999998876554332210 022368999999999 9999999888
Q ss_pred CCcceEEEEe
Q 023384 273 FGMRFLIEIY 282 (283)
Q Consensus 273 ~~~~~~i~~~ 282 (283)
......++++
T Consensus 149 ~~~~~~l~~~ 158 (170)
T 3i9f_A 149 TPYHFGLVLK 158 (170)
T ss_dssp STTEEEEEEE
T ss_pred CCceEEEEEe
Confidence 7666666654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=136.90 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=107.1
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC-CceEEEecccccCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGL 189 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~ 189 (283)
.+|||||||+|.++..+++ +..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999998876 5778999999 777776654 2569999999998 433 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
++++...+|++++++|+| ||.+++.+.........+ ...++.++|.++|+++||+++++
T Consensus 146 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp CGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEEE
Confidence 988888999999999999 799888776544322211 11258999999999999999988
Q ss_pred EEcC
Q 023384 270 TPIF 273 (283)
Q Consensus 270 ~~~~ 273 (283)
...+
T Consensus 205 ~~~~ 208 (235)
T 3lcc_A 205 EENP 208 (235)
T ss_dssp EECT
T ss_pred EecC
Confidence 7654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-17 Score=134.54 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=109.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC---CCC--CceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ---FIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh~~ 189 (283)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++|++
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999998 568999999 8888877643 8999999876 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
++++...+|++++++||| ||.+++......... . ..... ........++.+++.++++++||+++++
T Consensus 115 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~---~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 115 DPERLFELLSLCYSKMKY---SSYIVIESPNPTSLY------S---LINFY-IDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp CGGGHHHHHHHHHHHBCT---TCCEEEEEECTTSHH------H---HHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHHHHHHcCC---CcEEEEEeCCcchhH------H---HHHHh-cCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 998888999999999999 788888665422110 0 01100 1112345678999999999999999887
Q ss_pred EEcC
Q 023384 270 TPIF 273 (283)
Q Consensus 270 ~~~~ 273 (283)
....
T Consensus 182 ~~~~ 185 (240)
T 3dli_A 182 EFFE 185 (240)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6653
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=137.59 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=111.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
...+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46899999999999999999887 568999999 888777654 2368999999877 544 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
++++++...+|++++++|+| ||.+++.+...+.... ++ .......++.++|.++++++||+++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~----------~~----~~~~~~~~~~~~~~~~l~~aGf~~~ 220 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVI----------LD----DVDSSVCRDLDVVRRIICSAGLSLL 220 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEE----------EE----TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCCcce----------ec----ccCCcccCCHHHHHHHHHHcCCeEE
Confidence 99998888999999999999 7999998877654110 00 0012234589999999999999999
Q ss_pred eEEEcC
Q 023384 268 KITPIF 273 (283)
Q Consensus 268 ~~~~~~ 273 (283)
++....
T Consensus 221 ~~~~~~ 226 (241)
T 2ex4_A 221 AEERQE 226 (241)
T ss_dssp EEEECC
T ss_pred EeeecC
Confidence 987654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=137.47 Aligned_cols=143 Identities=16% Similarity=0.182 Sum_probs=110.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
+....+|||||||+|.++..+++.+|. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 456689999999999999999999986 9999999 777776654 4579999999987 655 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
++|++ + ...+|++++++|+| ||++++.+............ ...+. .......+.+++.++++++||
T Consensus 123 ~l~~~-~--~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~l~~aGf 188 (257)
T 3f4k_A 123 AIYNI-G--FERGMNEWSKYLKK---GGFIAVSEASWFTSERPAEI--EDFWM------DAYPEISVIPTCIDKMERAGY 188 (257)
T ss_dssp CSCCC-C--HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCHHH--HHHHH------HHCTTCCBHHHHHHHHHHTTE
T ss_pred hHhhc-C--HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChHHH--HHHHH------HhCCCCCCHHHHHHHHHHCCC
Confidence 99999 3 34789999999999 89999998765443322100 00111 011235689999999999999
Q ss_pred CeeeEEEcC
Q 023384 265 SHYKITPIF 273 (283)
Q Consensus 265 ~~~~~~~~~ 273 (283)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (257)
T 3f4k_A 189 TPTAHFILP 197 (257)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEECC
Confidence 999887654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=140.24 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=120.1
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~ 176 (283)
..+++ .++ ..+..+|||||||+|.++..+++.++ .+++++|+ +++++.+++ .++++++.+|+.+....
T Consensus 62 ~~~~~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 137 (302)
T 3hem_A 62 KLALD-KLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 137 (302)
T ss_dssp HHHHH-TTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHH-HcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCC
Confidence 34455 444 56778999999999999999999987 89999999 888777664 34899999999765235
Q ss_pred ceEEEecccccCCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhh-----hhhhccccc-cc
Q 023384 177 ADAFLFKLVFHGLGD-------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE-----TKFLFDIVM-SV 243 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~-----~~~~~~~~~-~~ 243 (283)
||+|++..++|++++ +....+|++++++|+| ||++++.+...++......... ...+.++.. ..
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 214 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhc
Confidence 999999999999954 5677999999999999 8999998887764422110000 000001111 11
Q ss_pred ccCCccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 244 NATGKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 244 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
..++...+.+++.++++++||+++++....
T Consensus 215 ~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 215 FPGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 235677899999999999999999887653
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=144.64 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=112.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCC--------------CCeEEEEcCCCC-------C
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPEA--------------DNLKYIAGDMFQ-------F 173 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~rv~~~~~d~~~-------~ 173 (283)
....+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456899999999999999999987 8899999999 8777766541 689999999987 4
Q ss_pred CC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCC
Q 023384 174 IP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERT 251 (283)
Q Consensus 174 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 251 (283)
++ .||+|++..++|++++.. .+|++++++||| ||.+++.+.......... .......+....+..++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 230 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRD---GGELYFSDVYADRRLSEA------AQQDPILYGECLGGALY 230 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEESSCCCHH------HHHCHHHHHTTCTTCCB
T ss_pred CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCC---CCEEEEEEeccccccCHh------HhhhHHHhhcccccCCC
Confidence 44 499999999999998854 889999999999 799999887665432221 01111112222345678
Q ss_pred HHHHHHHHHHCCCCeeeEEE
Q 023384 252 ESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~~~~ 271 (283)
.++|.++|+++||+.+++..
T Consensus 231 ~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 231 LEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEe
Confidence 99999999999999887654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-17 Score=141.09 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=118.7
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~ 176 (283)
..+++ .++ .....+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ .++++++.+|+.+....
T Consensus 80 ~~~~~-~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (318)
T 2fk8_A 80 DLNLD-KLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP 155 (318)
T ss_dssp HHHHT-TSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred HHHHH-hcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCC
Confidence 34444 444 5567899999999999999999987 569999999 777776654 25799999998762246
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch----hhhh-hhhhccccc-ccccCCccC
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH----ELTE-TKFLFDIVM-SVNATGKER 250 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~----~~~~-~~~~~~~~~-~~~~~~~~~ 250 (283)
||+|++..++|++++++...+|++++++|+| ||++++.+...+...... +... .....++.. ....++..+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 232 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCC
Confidence 9999999999999887788999999999999 899999888776532110 0000 000011110 111345667
Q ss_pred CHHHHHHHHHHCCCCeeeEEEc
Q 023384 251 TESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
+.+++.++++++||+++++...
T Consensus 233 s~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 233 STEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp CHHHHHHHHHHTTCBCCCCEEC
T ss_pred CHHHHHHHHHhCCCEEEEEEec
Confidence 9999999999999999887654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-17 Score=132.22 Aligned_cols=143 Identities=15% Similarity=0.042 Sum_probs=103.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCeEEEEcCCCC-CCC--CceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------A----DNLKYIAGDMFQ-FIP--PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~rv~~~~~d~~~-~~p--~~D~v 180 (283)
.....+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 34568999999999999999999999999999999 888877654 1 289999999976 433 59999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH----
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA---- 256 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~---- 256 (283)
++..++|++++++..++|++++++|+| ||. ++...........+ ...............++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~-~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTV-IVSTPNKEYNFHYG------NLFEGNLRHRDHRFEWTRKEFQTWAV 176 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEE-EEEEEBGGGGGCCC------CT-----GGGCCTTSBCHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEE-EEEccchhhhhhhc------ccCcccccccCceeeecHHHHHHHHH
Confidence 999999999998888999999999999 674 44433221110000 0000000011123446888988
Q ss_pred HHHHHCCCCeee
Q 023384 257 KLFFDACFSHYK 268 (283)
Q Consensus 257 ~ll~~aGf~~~~ 268 (283)
++++++||++.-
T Consensus 177 ~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 177 KVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHTEEEEE
T ss_pred HHHHHCCcEEEE
Confidence 788999997543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-17 Score=133.41 Aligned_cols=160 Identities=15% Similarity=0.105 Sum_probs=111.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEecc-cccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKL-VFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~-vlh~ 188 (283)
...+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. +||+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999988 568999999 788777664 2389999999987 554 599999998 9999
Q ss_pred CCh-hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch----hh---------hh------hhhhcccccccccC--
Q 023384 189 LGD-EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH----EL---------TE------TKFLFDIVMSVNAT-- 246 (283)
Q Consensus 189 ~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~----~~---------~~------~~~~~~~~~~~~~~-- 246 (283)
+++ ++...+|++++++|+| ||.+++ +...+...... .+ .. ......+.++...+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIF-DINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEF 190 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEE-EEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSS
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEE-EecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCc
Confidence 943 6778999999999999 677765 33221100000 00 00 00000111111111
Q ss_pred ---------CccCCHHHHHHHHHHCCCCeeeEEEc--------CCcceEEEEeC
Q 023384 247 ---------GKERTESEWAKLFFDACFSHYKITPI--------FGMRFLIEIYP 283 (283)
Q Consensus 247 ---------~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~~i~~~~ 283 (283)
.+.++.++|.++|+++||+++++... .....+++|+|
T Consensus 191 ~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 191 YKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred ccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 24569999999999999999998754 12345777775
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=132.49 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=108.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC-CceEEEecccccCCChh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d~ 192 (283)
++...+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.++.+|+.+ +.+ .||+|++..++|+++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999987 679999999 8888777653367888999887 533 49999999999999988
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC-CCeeeEEE
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC-FSHYKITP 271 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~ 271 (283)
+...+|++++++|+| ||.+++............ .. ..-..++.++|.++++++| |+++++..
T Consensus 119 ~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--------~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 119 ELADVLKLIWRALKP---GGLFYASYKSGEGEGRDK--------LA------RYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHHHHHHEEE---EEEEEEEEECCSSCEECT--------TS------CEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred HHHHHHHHHHHhcCC---CcEEEEEEcCCCcccccc--------cc------hhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 889999999999999 788877654332211110 00 0123468999999999999 99998865
Q ss_pred c
Q 023384 272 I 272 (283)
Q Consensus 272 ~ 272 (283)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=138.44 Aligned_cols=143 Identities=14% Similarity=0.133 Sum_probs=111.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
+....+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456789999999999999999998 8889999999 877776654 3679999999988 654 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
++|++ +. ..+|++++++|+| ||.+++.+............ ...+. .......+.+++.++++++||
T Consensus 123 ~~~~~-~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~l~~aGf 188 (267)
T 3kkz_A 123 AIYNI-GF--ERGLNEWRKYLKK---GGYLAVSECSWFTDERPAEI--NDFWM------DAYPEIDTIPNQVAKIHKAGY 188 (267)
T ss_dssp CGGGT-CH--HHHHHHHGGGEEE---EEEEEEEEEEESSSCCCHHH--HHHHH------HHCTTCEEHHHHHHHHHHTTE
T ss_pred Cceec-CH--HHHHHHHHHHcCC---CCEEEEEEeeecCCCChHHH--HHHHH------HhCCCCCCHHHHHHHHHHCCC
Confidence 99999 33 5789999999999 89999998875443322101 00110 011244589999999999999
Q ss_pred CeeeEEEcC
Q 023384 265 SHYKITPIF 273 (283)
Q Consensus 265 ~~~~~~~~~ 273 (283)
+++++...+
T Consensus 189 ~~v~~~~~~ 197 (267)
T 3kkz_A 189 LPVATFILP 197 (267)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
Confidence 999887764
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-17 Score=135.42 Aligned_cols=149 Identities=16% Similarity=0.124 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC--CceEEEecccccCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~ 189 (283)
....+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 121 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI 121 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence 35689999999999999999998665 8999999 778777654 4789999999987 654 49999999999999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC------------CCccchhhhhhhhhccccc----cc--ccCCccCC
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVIN------------AEEEEHELTETKFLFDIVM----SV--NATGKERT 251 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~------------~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~t 251 (283)
++. .++|++++++|+| ||.+++...... .......... ..+++-.. +. ......+|
T Consensus 122 ~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t 195 (253)
T 3g5l_A 122 ASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPV-DRYFNESMRTSHFLGEDVQKYHRT 195 (253)
T ss_dssp SCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEE-CCTTCCCEEEEEETTEEEEEECCC
T ss_pred hhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEEEe-ccccccceEEEeeccccCccEecC
Confidence 765 5889999999999 788877643211 0000000000 00000000 00 01122349
Q ss_pred HHHHHHHHHHCCCCeeeEEEc
Q 023384 252 ESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~~~~~ 272 (283)
.++|.++|+++||+++++...
T Consensus 196 ~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 196 VTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp HHHHHHHHHHTTEEEEEEECC
T ss_pred HHHHHHHHHHcCCeeeeeecC
Confidence 999999999999999988754
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=138.63 Aligned_cols=151 Identities=15% Similarity=0.198 Sum_probs=110.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCCC-ceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIPP-ADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~-~D~v~~~~vl 186 (283)
.....+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.++ ||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 456789999999999999999999995 89999999 777766554 3489999999998 5554 9999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec-----C---CCccchhhhhhhhhccccc--ccccCCccCCHHHHH
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI-----N---AEEEEHELTETKFLFDIVM--SVNATGKERTESEWA 256 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~-----~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~e~~ 256 (283)
|++++.. ++|++++++|+| ||.+++.++.. . +....++......+..+.. ....+....+..++.
T Consensus 100 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (284)
T 3gu3_A 100 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 174 (284)
T ss_dssp GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred hcCCCHH--HHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence 9998865 889999999999 89999988651 1 1111100000001111110 001233445677899
Q ss_pred HHHHHCCCCeeeEEE
Q 023384 257 KLFFDACFSHYKITP 271 (283)
Q Consensus 257 ~ll~~aGf~~~~~~~ 271 (283)
++|++|||+.+++..
T Consensus 175 ~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 175 IYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHcCCCeEEEEE
Confidence 999999999987743
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-17 Score=132.79 Aligned_cols=148 Identities=14% Similarity=0.211 Sum_probs=109.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCC-CCC--CceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQ-FIP--PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~-~~p--~~D~v 180 (283)
++...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 456789999999999999999998 679999999 777765543 2368999999988 654 49999
Q ss_pred EecccccCCChh-HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccc------cc---------
Q 023384 181 LFKLVFHGLGDE-DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS------VN--------- 244 (283)
Q Consensus 181 ~~~~vlh~~~d~-~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~------~~--------- 244 (283)
++..++|++++. +..++|++++++|+| ||++++.+.......... .......+... ..
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLKLY---RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSHHH---HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHHHH---HHHhhhhccchhhhcceEecccccCCcc
Confidence 999999999764 466899999999999 799999887654332210 00000000000 00
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
.....++.++|.++|+++||+++++..
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence 012467999999999999999998754
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-17 Score=134.90 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=106.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCCCCC--CceEEEecccccCCCh
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQFIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~~d 191 (283)
....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4557899999999999999999876 7899999 778777665 2289999999987433 4999999999999988
Q ss_pred hHHHHHHHHHH-HhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcc---ccc--ccccCCccCCHHHHHHHHHHCCCC
Q 023384 192 EDGLKILKKRR-AAIASNGERGKVIIIDIVINAEEEEHELTETKFLFD---IVM--SVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 192 ~~~~~iL~~~~-~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
.. .+|++++ ++|+| ||++++.++........... ....... +.. ........++.+++.++|+++||+
T Consensus 119 ~~--~~l~~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 192 (250)
T 2p7i_A 119 PV--ALLKRINDDWLAE---GGRLFLVCPNANAVSRQIAV-KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ 192 (250)
T ss_dssp HH--HHHHHHHHTTEEE---EEEEEEEEECTTCHHHHHHH-HTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred HH--HHHHHHHHHhcCC---CCEEEEEcCChHHHHHHHHH-HcCccccchhcccccccccccccCCHHHHHHHHHHCCCe
Confidence 64 8899999 99999 78988877543221100000 0000000 000 011123567999999999999999
Q ss_pred eeeEEE
Q 023384 266 HYKITP 271 (283)
Q Consensus 266 ~~~~~~ 271 (283)
++++..
T Consensus 193 ~~~~~~ 198 (250)
T 2p7i_A 193 VTYRSG 198 (250)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 998754
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=130.14 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=104.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC--CceEEEecccccC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHG 188 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~ 188 (283)
.....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+
T Consensus 41 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 41 EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEEEeccccc
Confidence 34568999999999999999998732 38999999 777776654 3579999999988 654 4999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC---CCccchhhhh-------hhhhcc-----ccccc-ccCCccCCH
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN---AEEEEHELTE-------TKFLFD-----IVMSV-NATGKERTE 252 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~---~~~~~~~~~~-------~~~~~~-----~~~~~-~~~~~~~t~ 252 (283)
+++. ..+|++++++|+| ||++++...... .......... ...+.. ...+. ......++.
T Consensus 120 ~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 194 (243)
T 3bkw_A 120 VEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTV 194 (243)
T ss_dssp CSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCH
T ss_pred cchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccH
Confidence 9864 4889999999999 788888664211 0000000000 000000 00000 011223689
Q ss_pred HHHHHHHHHCCCCeeeEEEc
Q 023384 253 SEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~~ 272 (283)
++|.++|+++||+++++...
T Consensus 195 ~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 195 GTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCEeeeeccC
Confidence 99999999999999988754
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=132.58 Aligned_cols=150 Identities=12% Similarity=0.177 Sum_probs=112.2
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAF 180 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v 180 (283)
..+.+ .++ .....+|||||||+|.++..+++ |+.+++++|+ +.+++.+++..+++++.+|+.+ +++ .||+|
T Consensus 24 ~~l~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 24 NAIIN-LLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHH-HHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHH-HhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE
Confidence 34445 444 56778999999999999999997 7889999999 8888888875699999999988 665 49999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-cCCccCCHHHHHHHH
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLF 259 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll 259 (283)
++.+++|++++.. .+|++++++|| ||++++.+...+...... .. ..+..... ......+.+++. +|
T Consensus 99 ~~~~~l~~~~~~~--~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~-~l 165 (261)
T 3ege_A 99 ISILAIHHFSHLE--KSFQEMQRIIR----DGTIVLLTFDIRLAQRIW----LY--DYFPFLWEDALRFLPLDEQIN-LL 165 (261)
T ss_dssp EEESCGGGCSSHH--HHHHHHHHHBC----SSCEEEEEECGGGCCCCG----GG--GTCHHHHHHHHTSCCHHHHHH-HH
T ss_pred EEcchHhhccCHH--HHHHHHHHHhC----CcEEEEEEcCCchhHHHH----HH--HHHHHHhhhhhhhCCCHHHHH-HH
Confidence 9999999997754 88999999999 388999887543322110 00 00000001 123445678899 99
Q ss_pred HHCCCCeeeEEEc
Q 023384 260 FDACFSHYKITPI 272 (283)
Q Consensus 260 ~~aGf~~~~~~~~ 272 (283)
+++||+.+++...
T Consensus 166 ~~aGF~~v~~~~~ 178 (261)
T 3ege_A 166 QENTKRRVEAIPF 178 (261)
T ss_dssp HHHHCSEEEEEEC
T ss_pred HHcCCCceeEEEe
Confidence 9999999887654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=130.89 Aligned_cols=134 Identities=12% Similarity=0.070 Sum_probs=104.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEEcCCCC-CCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------------------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~d~~~-~~p 175 (283)
.....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..+++++.+|+++ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 569999999 788876653 2579999999998 543
Q ss_pred ---CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCH
Q 023384 176 ---PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTE 252 (283)
Q Consensus 176 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 252 (283)
.||+|++..++|++++++..+++++++++||| ||+++++....+..... ......+.
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~ 157 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ 157 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence 59999999999999988888899999999999 78855555433211000 00112579
Q ss_pred HHHHHHHHHCCCCeeeEEEc
Q 023384 253 SEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 253 ~e~~~ll~~aGf~~~~~~~~ 272 (283)
+|+.+++++ ||++..+...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEES
T ss_pred HHHHHHhcC-CcEEEEeccc
Confidence 999999998 9998776554
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=129.88 Aligned_cols=161 Identities=16% Similarity=0.271 Sum_probs=111.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEecc-cc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKL-VF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~-vl 186 (283)
+....+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGG
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCch
Confidence 445589999999999999998887 79999999 888877664 3679999999987 555 499999986 89
Q ss_pred cCC-ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc----hhh---------h--------hhhhhcccccccc
Q 023384 187 HGL-GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE----HEL---------T--------ETKFLFDIVMSVN 244 (283)
Q Consensus 187 h~~-~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~----~~~---------~--------~~~~~~~~~~~~~ 244 (283)
|++ +.++...+|++++++|+| ||.+++ +...+..... ..+ . ......++.++..
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTD---GGKLLF-DVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIE 183 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEE---EEEEEE-EEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCC---CeEEEE-EcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEE
Confidence 988 556778999999999999 677665 3221110000 000 0 0000011111111
Q ss_pred c-C-----------CccCCHHHHHHHHHHCCCCeeeEEEcC--------CcceEEEEeC
Q 023384 245 A-T-----------GKERTESEWAKLFFDACFSHYKITPIF--------GMRFLIEIYP 283 (283)
Q Consensus 245 ~-~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~--------~~~~~i~~~~ 283 (283)
. + .+.++.+++.++|+++||++++++... ....+++|+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K 242 (243)
T 3d2l_A 184 GEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK 242 (243)
T ss_dssp CTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred cCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence 1 1 135799999999999999999987541 2345777776
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=131.12 Aligned_cols=140 Identities=15% Similarity=0.057 Sum_probs=103.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C----CCeEEEEcCCCC-CCC--CceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------A----DNLKYIAGDMFQ-FIP--PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~rv~~~~~d~~~-~~p--~~D~v 180 (283)
.....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 44568999999999999999999999899999999 777776654 1 289999999876 433 59999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccc---cccccCCccCCHHHHH-
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIV---MSVNATGKERTESEWA- 256 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~t~~e~~- 256 (283)
++..++|++++++..++|++++++|+| ||.+++... .+.. ..+..+. .........++.+++.
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPN-IEYN---------VKFANLPAGKLRHKDHRFEWTRSQFQN 173 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB-HHHH---------HHTC-----------CCSCBCHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccC-cccc---------hhhcccccccccccccccccCHHHHHH
Confidence 999999999998888999999999999 675554432 1100 0010010 0001123456889998
Q ss_pred ---HHHHHCCCCeee
Q 023384 257 ---KLFFDACFSHYK 268 (283)
Q Consensus 257 ---~ll~~aGf~~~~ 268 (283)
++++++||++.-
T Consensus 174 ~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 174 WANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHSSEEEEE
T ss_pred HHHHHHHHcCceEEE
Confidence 889999997643
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=133.52 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=108.9
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC-CceEEE
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP-PADAFL 181 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p-~~D~v~ 181 (283)
.+++ .+. .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|+
T Consensus 24 ~l~~-~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 24 DLLA-QVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHT-TCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHH-hcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 3444 443 45668999999999999999999999999999999 888877765 5789999999988 522 499999
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc-cc---ccCCccCCHHHHHH
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM-SV---NATGKERTESEWAK 257 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~t~~e~~~ 257 (283)
+..++|++++. ..+|++++++|+| ||.+++......................+.. +. ......++.++|.+
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 99999999775 4789999999999 7888887753322111100000000000000 00 01234578999999
Q ss_pred HHHHCCCCe
Q 023384 258 LFFDACFSH 266 (283)
Q Consensus 258 ll~~aGf~~ 266 (283)
+|+++||++
T Consensus 176 ~l~~aGf~v 184 (259)
T 2p35_A 176 ALSPKSSRV 184 (259)
T ss_dssp HHGGGEEEE
T ss_pred HHHhcCCce
Confidence 999999964
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-16 Score=125.83 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=106.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP-PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~v~~~~vl 186 (283)
.....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l 107 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVL 107 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCG
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchh
Confidence 445679999999999999999987 679999999 777776654 2479999999988 554 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
|++++++...+|++++++|+| ||.+++++....+....+ ......++.+++++++++ |++
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~--f~~ 167 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRRYYEG--WER 167 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHHHTTT--SEE
T ss_pred hhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHHHhcC--CeE
Confidence 999988888999999999999 799888887665432110 011234578999999986 988
Q ss_pred eeEEE
Q 023384 267 YKITP 271 (283)
Q Consensus 267 ~~~~~ 271 (283)
++...
T Consensus 168 ~~~~~ 172 (199)
T 2xvm_A 168 VKYNE 172 (199)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 87643
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=135.14 Aligned_cols=158 Identities=13% Similarity=0.099 Sum_probs=111.5
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC-CceEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP-PADAF 180 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p-~~D~v 180 (283)
..+++ .+. .....+|||||||+|.++..+++ |..+++++|+ +.+++.+++ ..++.++.+|+.+ +++ .||+|
T Consensus 47 ~~l~~-~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 121 (279)
T 3ccf_A 47 EDLLQ-LLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAV 121 (279)
T ss_dssp CHHHH-HHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEE
T ss_pred HHHHH-HhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEE
Confidence 34445 444 55678999999999999999998 7889999999 888877665 4689999999988 655 49999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch-hhhhhhhhcccccc-cccCCccCCHHHHHHH
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH-ELTETKFLFDIVMS-VNATGKERTESEWAKL 258 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~t~~e~~~l 258 (283)
++..++|++++.. .+|++++++|+| ||.+++............ .+............ .......++.+++.++
T Consensus 122 ~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (279)
T 3ccf_A 122 FSNAMLHWVKEPE--AAIASIHQALKS---GGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNI 196 (279)
T ss_dssp EEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHH
T ss_pred EEcchhhhCcCHH--HHHHHHHHhcCC---CcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHH
Confidence 9999999998765 789999999999 788887665332211100 00000000000000 0011235689999999
Q ss_pred HHHCCCCeeeEEEc
Q 023384 259 FFDACFSHYKITPI 272 (283)
Q Consensus 259 l~~aGf~~~~~~~~ 272 (283)
|+++||+++++...
T Consensus 197 l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 197 LEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHTEEEEEEEEE
T ss_pred HHHcCCEEEEEEEe
Confidence 99999999876543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-16 Score=126.50 Aligned_cols=137 Identities=13% Similarity=0.084 Sum_probs=101.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCChhHH
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDEDG 194 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~~ 194 (283)
..+|||||||+|.++..+++. +++|+ +.+++.+++. +++++.+|+.+ +++ .||+|++..++|++++..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~- 119 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDPE- 119 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCHH-
Confidence 689999999999999988765 99999 7777776644 79999999987 654 499999999999997754
Q ss_pred HHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 195 LKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 195 ~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
.+|++++++|+| ||.+++.+...... .. ..................++.+++.++|+++||+++++...
T Consensus 120 -~~l~~~~~~L~p---gG~l~i~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 -RALKEAYRILKK---GGYLIVGIVDRESF-LG----REYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp -HHHHHHHHHEEE---EEEEEEEEECSSSH-HH----HHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred -HHHHHHHHHcCC---CcEEEEEEeCCccH-HH----HHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 889999999999 78888876543211 10 00000000000011245579999999999999999987654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-16 Score=130.02 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=107.6
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-----C-CC-c
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-----I-PP-A 177 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-----~-p~-~ 177 (283)
.++. .+. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. . .. |
T Consensus 43 ~~~~-~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 43 AILL-AIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHH-HHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCE
T ss_pred HHHH-Hhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCc
Confidence 3444 443 445589999999999999999988 679999999 88888777667788888877651 1 23 9
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc------ccCCccCC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV------NATGKERT 251 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~t 251 (283)
|+|++..++| +.+. ..+|++++++|+| ||.+++.+.......... +. ..+....... ......++
T Consensus 118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3e8s_A 118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-YQ--DGWREESFAGFAGDWQPMPWYFRT 188 (227)
T ss_dssp EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-CS--CEEEEECCTTSSSCCCCEEEEECC
T ss_pred cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-cc--cccchhhhhccccCcccceEEEec
Confidence 9999999999 6554 4889999999999 788888776543322110 00 0000000000 01123469
Q ss_pred HHHHHHHHHHCCCCeeeEEE
Q 023384 252 ESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~~~~ 271 (283)
.++|.++|+++||+++++..
T Consensus 189 ~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 189 LASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHHHHHHTTEEEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEEec
Confidence 99999999999999998865
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-16 Score=123.73 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=104.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--CceEEEec-ccccCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PADAFLFK-LVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~D~v~~~-~vlh~~ 189 (283)
.+...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.++.+|+.+ +++ .||+|++. .++|++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 456689999999999999999987 679999999 777777665 5679999999998 655 49999998 899999
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
++++...+|+++++.|+| ||.+++.... ...++.+++.++++++||++.++
T Consensus 122 ~~~~~~~~l~~~~~~l~~---~G~l~~~~~~--------------------------~~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 122 AEDGREPALANIHRALGA---DGRAVIGFGA--------------------------GRGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEET--------------------------TSSCCHHHHHHHHHHHTEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCC---CCEEEEEeCC--------------------------CCCcCHHHHHHHHHHcCCEEeee
Confidence 888888999999999999 6887775421 11257899999999999999887
Q ss_pred EEc
Q 023384 270 TPI 272 (283)
Q Consensus 270 ~~~ 272 (283)
...
T Consensus 173 ~~~ 175 (195)
T 3cgg_A 173 FES 175 (195)
T ss_dssp ESS
T ss_pred ecc
Confidence 543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-17 Score=139.94 Aligned_cols=147 Identities=14% Similarity=0.223 Sum_probs=103.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C---------------------------
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------A--------------------------- 160 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~--------------------------- 160 (283)
+....+|||||||+|.++..+++.+|..+++++|+ +.+++.|++ .
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 33568999999999999999999999999999999 777765543 0
Q ss_pred ------------------------------CCeEEEEcCCCC-C-------CCCceEEEecccccCC----ChhHHHHHH
Q 023384 161 ------------------------------DNLKYIAGDMFQ-F-------IPPADAFLFKLVFHGL----GDEDGLKIL 198 (283)
Q Consensus 161 ------------------------------~rv~~~~~d~~~-~-------~p~~D~v~~~~vlh~~----~d~~~~~iL 198 (283)
.+|+|+.+|+.. + .+.||+|++..++|++ +++...++|
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 589999999986 3 1249999999999655 777889999
Q ss_pred HHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHH--CCCCeeeEEEc
Q 023384 199 KKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD--ACFSHYKITPI 272 (283)
Q Consensus 199 ~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 272 (283)
++++++|+| ||.+++........... . ...-.............+++.++|.+ +||+.+++...
T Consensus 204 ~~~~~~Lkp---GG~lil~~~~~~~y~~~------~-~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 204 RRIYRHLRP---GGILVLEPQPWSSYGKR------K-TLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHHEEE---EEEEEEECCCHHHHHTT------T-TSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHHhCC---CcEEEEecCCchhhhhh------h-cccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 999999999 67766643211100000 0 00000000011223457899999999 99998887654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=133.44 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=107.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C-CC--CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F-IP--PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~-~p--~~D~v~~~~v 185 (283)
...+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 3579999999999999999988 679999999 888877664 2689999999988 4 33 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhh-hhhhc-cccc---ccccCCccCCHHHHHHHHH
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTE-TKFLF-DIVM---SVNATGKERTESEWAKLFF 260 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~-~~~~~-~~~~---~~~~~~~~~t~~e~~~ll~ 260 (283)
+|++++.. .+|++++++|+| ||.+++.+.............. ..... .... ........++.+++.++|+
T Consensus 146 l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 220 (285)
T 4htf_A 146 LEWVADPR--SVLQTLWSVLRP---GGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLE 220 (285)
T ss_dssp GGGCSCHH--HHHHHHHHTEEE---EEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHH
T ss_pred hhcccCHH--HHHHHHHHHcCC---CeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHH
Confidence 99998764 789999999999 7888887754322110000000 00000 0000 0011235578999999999
Q ss_pred HCCCCeeeEEEcC
Q 023384 261 DACFSHYKITPIF 273 (283)
Q Consensus 261 ~aGf~~~~~~~~~ 273 (283)
++||+++++....
T Consensus 221 ~aGf~v~~~~~~~ 233 (285)
T 4htf_A 221 EAGWQIMGKTGVR 233 (285)
T ss_dssp HTTCEEEEEEEES
T ss_pred HCCCceeeeeeEE
Confidence 9999999887654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.8e-16 Score=130.20 Aligned_cols=158 Identities=11% Similarity=0.123 Sum_probs=111.4
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hH------HHhcCCC-------CCCeEEEEcC-
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PH------VVANLPE-------ADNLKYIAGD- 169 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~-------~~rv~~~~~d- 169 (283)
.+++ .++ .....+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ .++++++.+|
T Consensus 34 ~l~~-~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 34 AIAE-AWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHH-HHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHH-HcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 4455 554 6677899999999999999999996 8899999999 54 5655543 2689999998
Q ss_pred CCC---CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhh-hhhcc--ccc
Q 023384 170 MFQ---FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTET-KFLFD--IVM 241 (283)
Q Consensus 170 ~~~---~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~-~~~~~--~~~ 241 (283)
+.. +++ .||+|++..++|++++.. .+++.+++.++| ||.+++.+...+...... .... ..... +..
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYA 184 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhh
Confidence 543 333 499999999999999876 467777777777 799999998776543221 0000 00000 000
Q ss_pred cc---c-cCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 242 SV---N-ATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 242 ~~---~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
.. . .....++.+++.++++++||+++++...
T Consensus 185 ~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 185 IAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00 0 1123579999999999999999877654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-16 Score=129.63 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=108.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC-------CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP-------PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p-------~~D~v~~~ 183 (283)
.....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45668999999999999999999987 8999999 778776654 4589999999998 432 28999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhh--hhhcccc--cccccCCccCCHHHHHHHH
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTET--KFLFDIV--MSVNATGKERTESEWAKLF 259 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~t~~e~~~ll 259 (283)
.++|++++++..++|++++++|+| ||+++|.+...++.......... .....+. +-.......++.+++.+++
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999988888999999999999 89999999865432110000000 0000000 0000112236899999999
Q ss_pred HHCCCCeeeEEE
Q 023384 260 FDACFSHYKITP 271 (283)
Q Consensus 260 ~~aGf~~~~~~~ 271 (283)
+||++++...
T Consensus 209 --aGf~~~~~~~ 218 (245)
T 3ggd_A 209 --PDFEILSQGE 218 (245)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCEEEeccc
Confidence 9999887543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=121.21 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=97.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCChh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~ 192 (283)
.....+|||||||+|.++..++ .+++++|+.+. ++.++.+|+.+ +++ .||+|++..++| +.+
T Consensus 65 ~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~- 129 (215)
T 2zfu_A 65 RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTN- 129 (215)
T ss_dssp SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCC-SSC-
T ss_pred cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhcc-ccC-
Confidence 3456899999999999998772 68999998432 57789999988 655 499999999998 444
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
...+|++++++|+| ||.+++.+... ...+.+++.++++++||+++++...
T Consensus 130 -~~~~l~~~~~~L~~---gG~l~i~~~~~--------------------------~~~~~~~~~~~l~~~Gf~~~~~~~~ 179 (215)
T 2zfu_A 130 -IRDFLEEANRVLKP---GGLLKVAEVSS--------------------------RFEDVRTFLRAVTKLGFKIVSKDLT 179 (215)
T ss_dssp -HHHHHHHHHHHEEE---EEEEEEEECGG--------------------------GCSCHHHHHHHHHHTTEEEEEEECC
T ss_pred -HHHHHHHHHHhCCC---CeEEEEEEcCC--------------------------CCCCHHHHHHHHHHCCCEEEEEecC
Confidence 45889999999999 79988886321 0127899999999999999887666
Q ss_pred CCcceEEEEeC
Q 023384 273 FGMRFLIEIYP 283 (283)
Q Consensus 273 ~~~~~~i~~~~ 283 (283)
.+...+++++|
T Consensus 180 ~~~~~~~~~~k 190 (215)
T 2zfu_A 180 NSHFFLFDFQK 190 (215)
T ss_dssp STTCEEEEEEE
T ss_pred CCeEEEEEEEe
Confidence 66667777764
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=123.84 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=104.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC---CCC--CceEEEecccccCCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ---FIP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh~~~ 190 (283)
....+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..+++.+|+.+ +++ .||+|++..++|+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 45689999999999999999988 4 89999999 7777777642 23788999875 333 499999999999998
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc-----ccccCCccCCHHHHHHHHHHCCCC
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM-----SVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
+.. .+|++++++|+| ||.+++..+......... . .....+.. ........++.++|.++++++||+
T Consensus 108 ~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 178 (230)
T 3cc8_A 108 DPW--AVIEKVKPYIKQ---NGVILASIPNVSHISVLA---P-LLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYS 178 (230)
T ss_dssp CHH--HHHHHTGGGEEE---EEEEEEEEECTTSHHHHH---H-HHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEE
T ss_pred CHH--HHHHHHHHHcCC---CCEEEEEeCCcchHHHHH---H-HhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCe
Confidence 864 889999999999 788888765432211000 0 00000000 001123457999999999999999
Q ss_pred eeeEEEc
Q 023384 266 HYKITPI 272 (283)
Q Consensus 266 ~~~~~~~ 272 (283)
++++...
T Consensus 179 ~~~~~~~ 185 (230)
T 3cc8_A 179 ISKVDRV 185 (230)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9988764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=125.30 Aligned_cols=132 Identities=7% Similarity=-0.012 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMFQ 172 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~~ 172 (283)
....+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++.+|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35689999999999999999987 669999999 777766532 2579999999998
Q ss_pred -CC---CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCc
Q 023384 173 -FI---PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGK 248 (283)
Q Consensus 173 -~~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
+. ..||+|+...+||++++++...++++++++||| ||+++++....+..... ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~ 204 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF 204 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence 54 359999999999999988888999999999999 78887666543321100 0011
Q ss_pred cCCHHHHHHHHHHCCCCeeeEEE
Q 023384 249 ERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 249 ~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
..+.+|+.+++++ +|++..+..
T Consensus 205 ~~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 205 YVPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CCCHHHHHHHHTT-TEEEEEEEE
T ss_pred CCCHHHHHHHhhC-CeEEEEEec
Confidence 2589999999987 599877654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=125.68 Aligned_cols=144 Identities=11% Similarity=0.085 Sum_probs=102.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
.....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 578999999 777766543 4689999999987 655 39999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccc-ccc---cCCccCCHHHHHHHHHHC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM-SVN---ATGKERTESEWAKLFFDA 262 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~t~~e~~~ll~~a 262 (283)
|++++. ..+|++++++|+| ||.+++. ...++.... ......+..+.. ... .....++.+++.++|+++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAEASPE--WTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRL 186 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEECCCHH--HHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHT
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCCccHH--HHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHc
Confidence 999875 4789999999999 7888777 222211110 000000000000 000 012345789999999999
Q ss_pred CCCeeeE
Q 023384 263 CFSHYKI 269 (283)
Q Consensus 263 Gf~~~~~ 269 (283)
||+++.+
T Consensus 187 Gf~~~~~ 193 (263)
T 2yqz_A 187 GLKPRTR 193 (263)
T ss_dssp TCCCEEE
T ss_pred CCCcceE
Confidence 9997765
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.9e-15 Score=123.67 Aligned_cols=98 Identities=14% Similarity=0.191 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCChh
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~ 192 (283)
....+|||||||+|.++..+++.+ .+++++|+ +.+++.+++..+++++.+|+.+ +++ .||+|++..++|+++.+
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~ 115 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD 115 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence 455799999999999999999875 57999999 8899999888899999999988 776 39999999999877543
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
+.+++++++||| ||.++++....+
T Consensus 116 ---~~~~e~~rvLkp---gG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 ---RFWAELRRVARP---GAVFAAVTYGLT 139 (257)
T ss_dssp ---HHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred ---HHHHHHHHHcCC---CCEEEEEECCCC
Confidence 679999999999 899988876544
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-15 Score=125.67 Aligned_cols=133 Identities=20% Similarity=0.176 Sum_probs=104.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh 187 (283)
.....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 118 ~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 118 IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIVSTVVFM 195 (286)
T ss_dssp HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEEEccchh
Confidence 446789999999999999999988 669999999 777776654 3389999999998 444 499999999999
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
++++++...+|++++++|+| ||.++++.....+....+ ......++.+++.++++. |+++
T Consensus 196 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~--~~~~ 255 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKEYYKD--WEFL 255 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHHHTTT--SEEE
T ss_pred hCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHHHhcC--CEEE
Confidence 99999889999999999999 788887766554332211 011234567888888855 8887
Q ss_pred eEE
Q 023384 268 KIT 270 (283)
Q Consensus 268 ~~~ 270 (283)
+..
T Consensus 256 ~~~ 258 (286)
T 3m70_A 256 EYN 258 (286)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-14 Score=118.62 Aligned_cols=95 Identities=20% Similarity=0.292 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEec-cccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFK-LVFH 187 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~-~vlh 187 (283)
....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. ..+|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM 117 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchh
Confidence 45679999999999999999987 679999999 888877654 3479999999988 555 49999986 5667
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
+++.++..++|++++++|+| ||.+++
T Consensus 118 ~~~~~~~~~~l~~~~~~L~p---gG~li~ 143 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKP---GGVFIT 143 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCC---CeEEEE
Confidence 77878889999999999999 677654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=129.03 Aligned_cols=99 Identities=20% Similarity=0.198 Sum_probs=83.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC-C---CC--Cce
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ-F---IP--PAD 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~-~---~p--~~D 178 (283)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.+..+|+.+ + ++ .||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 456689999999999999999998 449999999 777776642 2578899999887 5 44 499
Q ss_pred EEEec-ccccCCCh-----hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 179 AFLFK-LVFHGLGD-----EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 179 ~v~~~-~vlh~~~d-----~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+|++. +++|++++ ++..++|++++++|+| ||.+++...
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 176 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHR 176 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 99998 89999998 7778999999999999 788877654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=127.22 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=107.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CC-------------------------------
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---AD------------------------------- 161 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~------------------------------- 161 (283)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 3457899999999999999888765 58999999 777776643 11
Q ss_pred -Ce-EEEEcCCCC-CC------CCceEEEecccccCCCh--hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh
Q 023384 162 -NL-KYIAGDMFQ-FI------PPADAFLFKLVFHGLGD--EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL 230 (283)
Q Consensus 162 -rv-~~~~~d~~~-~~------p~~D~v~~~~vlh~~~d--~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~ 230 (283)
++ .++.+|+.+ +. ..||+|++..+||+.++ ++...+|++++++|+| ||.+++.+..... ...
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~-~~~--- 206 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSS-YYM--- 206 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCC-EEE---
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCc-eEE---
Confidence 27 899999987 32 24999999999995433 2567899999999999 7888887743221 000
Q ss_pred hhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCC----------cceEEEEeC
Q 023384 231 TETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFG----------MRFLIEIYP 283 (283)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~----------~~~~i~~~~ 283 (283)
..+. .......+.+++.++|+++||+++++...+. ...+++|+|
T Consensus 207 -----~~~~----~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K 260 (265)
T 2i62_A 207 -----IGEQ----KFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRK 260 (265)
T ss_dssp -----ETTE----EEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEEC
T ss_pred -----cCCc----cccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecc
Confidence 0000 0112345889999999999999998875431 244667765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=122.35 Aligned_cols=149 Identities=12% Similarity=0.047 Sum_probs=107.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
.....+|||+|||+|..+..++.. ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 455689999999999986655544 5779999999 777777654 4679999999988 654 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch--hhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH--ELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
|+++.++..++|++++++|+| ||.+++.+...++..... +... ..+.............++.+++.++++++||
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~ 175 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGE-GEFLQLERGEKVIHSYVSLEEADKYFKDMKV 175 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEET-TEEEECC-CCCEEEEEECHHHHHHTTTTSEE
T ss_pred HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhcc-ccceeccCCCceeEEecCHHHHHHHHhhcCc
Confidence 999878888999999999999 788888887655432110 0000 0000000000011345689999999999998
Q ss_pred CeeeE
Q 023384 265 SHYKI 269 (283)
Q Consensus 265 ~~~~~ 269 (283)
...+.
T Consensus 176 ~~~~~ 180 (209)
T 2p8j_A 176 LFKED 180 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=126.57 Aligned_cols=153 Identities=12% Similarity=0.015 Sum_probs=108.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC-C--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI-P--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~-p--~~D~v~~~ 183 (283)
.....+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..++.++.+|+.+ ++ + .||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 456689999999999999998776 5669999999 777776654 2478999999998 65 3 39999999
Q ss_pred ccccC--CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCcc-------chhhhh------------hhhhcccccc
Q 023384 184 LVFHG--LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEE-------EHELTE------------TKFLFDIVMS 242 (283)
Q Consensus 184 ~vlh~--~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~-------~~~~~~------------~~~~~~~~~~ 242 (283)
.++|+ .+.++...+|++++++|+| ||.+++..+....... ...... ....+.+...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 99998 5677788999999999999 7888887654311000 000000 0000000000
Q ss_pred c---ccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 243 V---NATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 243 ~---~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
. ......++.++++++++++||+++++...
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0 01124568999999999999999988664
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.6e-15 Score=118.46 Aligned_cols=131 Identities=12% Similarity=0.069 Sum_probs=105.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC-CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh 187 (283)
.....+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++...+|
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE 136 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence 45668999999999999999776 57789999999 777776654 2349999999988444 599999988776
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
+ ...+++++++.|+| ||++++.+.... +.+++.++++++||+.+
T Consensus 137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence 4 46889999999999 788887553221 36788999999999999
Q ss_pred eEEEcCCcceEEEEeC
Q 023384 268 KITPIFGMRFLIEIYP 283 (283)
Q Consensus 268 ~~~~~~~~~~~i~~~~ 283 (283)
++.....+.+++.-+|
T Consensus 181 ~~~~~~~w~~~~~~~~ 196 (205)
T 3grz_A 181 LKMRAGRWIGLAISRK 196 (205)
T ss_dssp EEEEETTEEEEEEEEC
T ss_pred EeeccCCEEEEEEecc
Confidence 9988888888887654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-15 Score=125.27 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=94.7
Q ss_pred CCCeEEEEcCCccHHHH----HHHHHCCCCeE--EEeec-hHHHhcCCC-------CCCeEE--EEcCCCC-C------C
Q 023384 118 GLGSLVDVGGGNGSLSR----IISEAFPGIKC--TVLDL-PHVVANLPE-------ADNLKY--IAGDMFQ-F------I 174 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~-------~~rv~~--~~~d~~~-~------~ 174 (283)
...+|||||||+|.++. .++.++|+.++ +++|. +++++.+++ ..++++ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 34689999999997654 44566788854 99999 777776543 134544 4555433 2 2
Q ss_pred C--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-ccccc-cCCccC
Q 023384 175 P--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSVN-ATGKER 250 (283)
Q Consensus 175 p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~ 250 (283)
+ .||+|++.++||+++|.. +.|++++++||| ||++++.+... +.... ..+... ..+.. .....+
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSG-SSGWD------KLWKKYGSRFPQDDLCQYI 199 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECT-TSHHH------HHHHHHGGGSCCCTTCCCC
T ss_pred CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEEEecC-CccHH------HHHHHHHHhccCCCcccCC
Confidence 2 499999999999999875 779999999999 79998886432 11100 001000 00000 012456
Q ss_pred CHHHHHHHHHHCCCCeeeE
Q 023384 251 TESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~ 269 (283)
+.++|.++|+++||++.+.
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=125.80 Aligned_cols=150 Identities=14% Similarity=0.032 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C------------------------------
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----A------------------------------ 160 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~------------------------------ 160 (283)
....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 345789999999998877655442 126999999 777775442 0
Q ss_pred CCeE-EEEcCCCCC--C-----CCceEEEecccccCCC--hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh
Q 023384 161 DNLK-YIAGDMFQF--I-----PPADAFLFKLVFHGLG--DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL 230 (283)
Q Consensus 161 ~rv~-~~~~d~~~~--~-----p~~D~v~~~~vlh~~~--d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~ 230 (283)
.++. ++.+|+.+. + +.||+|++..+||+.. .++..++|++++++||| ||.+++.+...... ..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~-~~--- 205 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPS-YM--- 205 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-EE---
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCcc-ce---
Confidence 1233 889999872 2 3599999999999852 35667899999999999 78888876432110 00
Q ss_pred hhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcC----------CcceEEEEeC
Q 023384 231 TETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIF----------GMRFLIEIYP 283 (283)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~----------~~~~~i~~~~ 283 (283)
. . .. ......++.+++.++|+++||+++++...+ ....++.|+|
T Consensus 206 -~-g-~~------~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K 259 (263)
T 2a14_A 206 -V-G-KR------EFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK 259 (263)
T ss_dssp -E-T-TE------EEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred -e-C-Ce------EeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEe
Confidence 0 0 00 011234589999999999999998876542 1345667765
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=124.50 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=100.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC-CC--------CCc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ-FI--------PPA 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~--------p~~ 177 (283)
....+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8999999999 878776653 4689999999988 43 249
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc-ccCCcc--CCHHH
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV-NATGKE--RTESE 254 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~t~~e 254 (283)
|+|++..++|++ + ..++|++++++|+| ||.+++.+...+.....+... ..+..+..-. ..+... ...+.
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~w~~p~~~~ 186 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADPIFPDYPEFD--DLMIEVPYGKQGLGPYWEQPGRSR 186 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEEECTTCGGGT--THHHHHHHCTTTTGGGSCTTHHHH
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCccccCcHHHH--HHHHHhccCcccccchhhchhhHH
Confidence 999999999999 4 45889999999999 799888554332211111000 0011111000 001111 34667
Q ss_pred HHHHHHHCCCC
Q 023384 255 WAKLFFDACFS 265 (283)
Q Consensus 255 ~~~ll~~aGf~ 265 (283)
++++++++||.
T Consensus 187 ~~~~l~~~gfp 197 (299)
T 3g5t_A 187 LRNMLKDSHLD 197 (299)
T ss_dssp HHTTTTTCCCC
T ss_pred HHHhhhccCCC
Confidence 79999999994
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-14 Score=109.66 Aligned_cols=126 Identities=12% Similarity=0.147 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCC--CceEEEecccccCCChh-
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIP--PADAFLFKLVFHGLGDE- 192 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~~d~- 192 (283)
....+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 445799999999999999999986 9999999 777777 5679999999998655 49999999998865554
Q ss_pred ------HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 193 ------DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 193 ------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
+...+++++.+.+ | ||++++.+... .+.+++.++++++||+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~ 143 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYGT 143 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEE
T ss_pred cccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcE
Confidence 4467889999999 8 79988876321 14678899999999999
Q ss_pred eeEEEc-CCcceEEE
Q 023384 267 YKITPI-FGMRFLIE 280 (283)
Q Consensus 267 ~~~~~~-~~~~~~i~ 280 (283)
.++... .+...++.
T Consensus 144 ~~~~~~~~~~e~~~~ 158 (170)
T 3q87_B 144 RILKVRKILGETVYI 158 (170)
T ss_dssp EEEEEEECSSSEEEE
T ss_pred EEEEeeccCCceEEE
Confidence 887665 34444443
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=130.03 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=105.5
Q ss_pred hHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC------CC-
Q 023384 103 LTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ------FI- 174 (283)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~------~~- 174 (283)
....+++ .+. .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++. .+......+.. ++
T Consensus 95 ~~~~l~~-~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 95 LARDFLA-TEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHH-TTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHH-HhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccC
Confidence 3345555 554 566789999999999999999987 459999999 7788777652 33333322221 12
Q ss_pred -CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHH
Q 023384 175 -PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 253 (283)
Q Consensus 175 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 253 (283)
..||+|++.++|||+++. ..+|++++++|+| ||.+++..+...... . ...+..........++.+
T Consensus 169 ~~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~------~---~~~~~~~~~~~~~~~s~~ 234 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDIV------A---KTSFDQIFDEHFFLFSAT 234 (416)
T ss_dssp HCCEEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHHH------H---HTCGGGCSTTCCEECCHH
T ss_pred CCCEEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHhh------h---hcchhhhhhhhhhcCCHH
Confidence 249999999999999875 4889999999999 788887654332110 0 011111111233457999
Q ss_pred HHHHHHHHCCCCeeeEEEcC
Q 023384 254 EWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~~~~~ 273 (283)
++.++++++||+++++...+
T Consensus 235 ~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 235 SVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEEEcc
Confidence 99999999999999987764
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=117.31 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=101.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC----CCCCCeEEEEcCCCCC-----CC-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL----PEADNLKYIAGDMFQF-----IP-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~rv~~~~~d~~~~-----~p-~~D~v~~~~ 184 (283)
+.+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+ +...++.++.+|+.++ ++ .||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 45668999999999999999999998889999999 7776543 3357899999999862 22 499998
Q ss_pred cccCCChh-HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 185 VFHGLGDE-DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 185 vlh~~~d~-~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
|++++. ....+|+++++.|+| ||.+++. .........++. .....+++. +|+++|
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~-----------------~~~~~~~l~-~l~~~G 204 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTKDP-----------------KEIFKEQKE-ILEAGG 204 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSSCH-----------------HHHHHHHHH-HHHHHT
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCCCH-----------------HHhhHHHHH-HHHHCC
Confidence 555543 345679999999999 7888886 221111111000 011246787 999999
Q ss_pred CCeeeEEEcCCc---ceEEEEeC
Q 023384 264 FSHYKITPIFGM---RFLIEIYP 283 (283)
Q Consensus 264 f~~~~~~~~~~~---~~~i~~~~ 283 (283)
|+.+++.....+ +.+++++|
T Consensus 205 f~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 205 FKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEEE
T ss_pred CEEEEEEccCCCccceEEEEEEe
Confidence 999998877544 67777754
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=111.96 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=97.9
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC---CC
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI---PP 176 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~---p~ 176 (283)
++. .++ .....+|||||||+|.++..+++..|..+++++|+ +++++.+++ .++++++.+|+.+.. +.
T Consensus 32 ~l~-~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 32 TLS-KLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHH-HTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHH-HcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 344 444 56678999999999999999999999999999999 888877764 368999999997732 45
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
||+|++...++ +..++++++.+.|+| ||++++...... +.+++.
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~~----------------------------~~~~~~ 152 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTLD----------------------------TLTKAV 152 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBHH----------------------------HHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecccc----------------------------cHHHHH
Confidence 99999988776 345889999999999 788887553210 356788
Q ss_pred HHHHHCCCCeeeE
Q 023384 257 KLFFDACFSHYKI 269 (283)
Q Consensus 257 ~ll~~aGf~~~~~ 269 (283)
++++++|| .+++
T Consensus 153 ~~l~~~g~-~~~~ 164 (204)
T 3e05_A 153 EFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHTTC-EEEE
T ss_pred HHHHHCCC-ceeE
Confidence 89999998 4443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-14 Score=113.17 Aligned_cols=135 Identities=9% Similarity=0.048 Sum_probs=101.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
++.. +|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++.++.+|+.+ +++ .||+|++. +
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~ 102 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--F 102 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--C
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--h
Confidence 3444 9999999999999999887 569999999 777777664 3489999999988 655 49999984 3
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
++++.++...+|++++++|+| ||.+++.+......... .... ......++.+++.++++ ||++
T Consensus 103 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~l~~~l~--Gf~v 165 (202)
T 2kw5_A 103 CHLPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQYN---------TGGP---KDLDLLPKLETLQSELP--SLNW 165 (202)
T ss_dssp CCCCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGGT---------SCCS---SSGGGCCCHHHHHHHCS--SSCE
T ss_pred hcCCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccCC---------CCCC---CcceeecCHHHHHHHhc--CceE
Confidence 456777788999999999999 78888877654322100 0000 01124579999999999 9999
Q ss_pred eeEEEc
Q 023384 267 YKITPI 272 (283)
Q Consensus 267 ~~~~~~ 272 (283)
+++...
T Consensus 166 ~~~~~~ 171 (202)
T 2kw5_A 166 LIANNL 171 (202)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 886543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-14 Score=116.13 Aligned_cols=142 Identities=19% Similarity=0.221 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCc--cHHHHHH-HHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC-C----C----Cc
Q 023384 117 EGLGSLVDVGGGN--GSLSRII-SEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF-I----P----PA 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-~----p----~~ 177 (283)
.+..+|||||||+ +..+..+ .+..|+.+++++|. |.+++.+++ ..++.|+.+|+.++ . | .+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3567999999997 3344444 45689999999999 899988875 24799999999873 1 1 24
Q ss_pred e-----EEEecccccCCChhH-HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCC
Q 023384 178 D-----AFLFKLVFHGLGDED-GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERT 251 (283)
Q Consensus 178 D-----~v~~~~vlh~~~d~~-~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 251 (283)
| ++++..+||+++|++ ...+|++++++|+| ||.+++.+...+..... . ....+...........||
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~p~~--~---~~~~~~~~~~g~p~~~rs 228 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFAPQE--V---GRVAREYAARNMPMRLRT 228 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTSHHH--H---HHHHHHHHHTTCCCCCCC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCCHHH--H---HHHHHHHHhcCCCCccCC
Confidence 5 688999999999976 57899999999999 78888877655422111 0 011111111112345689
Q ss_pred HHHHHHHHHHCCCCeee
Q 023384 252 ESEWAKLFFDACFSHYK 268 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~ 268 (283)
.+|+.++|. ||++++
T Consensus 229 ~~ei~~~f~--Glelve 243 (277)
T 3giw_A 229 HAEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHHTTT--TSEECT
T ss_pred HHHHHHHhC--CCcccC
Confidence 999999994 998765
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-14 Score=122.47 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=95.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CC---------------------------------
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--AD--------------------------------- 161 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~--------------------------------- 161 (283)
...+|||||||+|.++. ++...+..+++++|+ +.+++.+++ ..
T Consensus 71 ~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 55799999999999543 444445669999999 777765432 00
Q ss_pred -CeEEEEcCCCC--C-----CC--CceEEEecccccCCChh--HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh
Q 023384 162 -NLKYIAGDMFQ--F-----IP--PADAFLFKLVFHGLGDE--DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE 229 (283)
Q Consensus 162 -rv~~~~~d~~~--~-----~p--~~D~v~~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~ 229 (283)
.+.++.+|+.+ + ++ .||+|++..+||+..++ +..++|++++++||| ||++++.+..... ...
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~-~~~-- 223 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEES-WYL-- 223 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCC-EEE--
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcc-eEE--
Confidence 14567778876 2 22 29999999999985543 567899999999999 7888887633211 000
Q ss_pred hhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 230 LTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
..+. ......++.++|.++|+++||+++++...
T Consensus 224 ------~~~~----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 224 ------AGEA----RLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp ------ETTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------cCCe----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 0000 01123468999999999999999887543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-13 Score=115.56 Aligned_cols=135 Identities=15% Similarity=0.143 Sum_probs=104.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEecc---
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKL--- 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~--- 184 (283)
....+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|++.-
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3457999999999999999999999999999999 777776654 2479999999998542 599999973
Q ss_pred ----------cccCCCh----------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 185 ----------VFHGLGD----------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 185 ----------vlh~~~d----------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
++++.+. +....+++++.+.|+| ||.+++...
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------------------------- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------------------------- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC-------------------------
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-------------------------
Confidence 4433331 3457899999999999 677666310
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEE-cCCcceEEEEeC
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITP-IFGMRFLIEIYP 283 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~~ 283 (283)
..+.+++.++++++||+.+++.. ..+...++.+++
T Consensus 240 ----~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ----WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ----SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ----chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 11467899999999999888765 456677777764
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=112.25 Aligned_cols=136 Identities=14% Similarity=0.046 Sum_probs=97.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--CceEEEecccccCCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGI-KCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~ 190 (283)
....+|||||||+|.++..+ .. +++++|+ +.+++.+++ ..++.++.+|+.+ +++ .||+|++..++|+++
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 36689999999999999877 45 8999999 777777665 4689999999988 655 499999999999998
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
+.. ++|++++++|+| ||.+++.+...... ... ......... .......+.++.++++++|+ | ++++.
T Consensus 110 ~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~-~~~-~~~~~~~~~--~~~~~~~~~~s~~~l~~~l~--G--~~~~~ 176 (211)
T 2gs9_A 110 DVE--RVLLEARRVLRP---GGALVVGVLEALSP-WAA-LYRRLGEKG--VLPWAQARFLAREDLKALLG--P--PEAEG 176 (211)
T ss_dssp CHH--HHHHHHHHHEEE---EEEEEEEEECTTSH-HHH-HHHHHHHTT--CTTGGGCCCCCHHHHHHHHC--S--CSEEE
T ss_pred CHH--HHHHHHHHHcCC---CCEEEEEecCCcCc-HHH-HHHHHhhcc--CccccccccCCHHHHHHHhc--C--cceeE
Confidence 754 889999999999 78888877543221 000 000000000 00001245679999999998 7 44443
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-14 Score=113.82 Aligned_cols=142 Identities=12% Similarity=0.069 Sum_probs=93.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhc----CCC------CCCeEEEEcCCCC-CCCC-ceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVAN----LPE------ADNLKYIAGDMFQ-FIPP-ADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~rv~~~~~d~~~-~~p~-~D~v~~ 182 (283)
.....+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ ..+++++.+|+.+ +++. .|.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 55668999999999999999999999999999999 765553 221 3589999999998 6542 366652
Q ss_pred cc---cc--cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 183 KL---VF--HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 183 ~~---vl--h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
.. .+ |+.++. ..+|++++++||| ||++++...........+ ....+. .....+..+++.+
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSVP------EVGEHP----EPTPDSADEWLAP 169 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBCG------GGTTCC----CCCHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEecccccccccc------ccccCC----ccchHHHHHHHHH
Confidence 22 22 234443 4789999999999 788777322111000000 000000 0011223456888
Q ss_pred HHHHCCCCeeeEEEc
Q 023384 258 LFFDACFSHYKITPI 272 (283)
Q Consensus 258 ll~~aGf~~~~~~~~ 272 (283)
+++++||++.++...
T Consensus 170 ~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 170 RYAEAGWKLADCRYL 184 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHcCCCceeeecc
Confidence 999999999887654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-13 Score=106.59 Aligned_cols=133 Identities=14% Similarity=0.262 Sum_probs=102.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CC--CeEEEEcCCCCCCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------AD--NLKYIAGDMFQFIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--rv~~~~~d~~~~~p--~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. |++++.+|+.++.+ .||+|++..
T Consensus 50 ~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~ 127 (194)
T 1dus_A 50 VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNP 127 (194)
T ss_dssp CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECC
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECC
Confidence 456689999999999999999988 779999999 777766654 22 49999999988543 499999988
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
.+|+ ..+....+++++++.|+| ||.+++...... ...++.+.+++. |
T Consensus 128 ~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~l~~~-~ 174 (194)
T 1dus_A 128 PIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKSLAKYMKDV-F 174 (194)
T ss_dssp CSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHHHHHHHHHH-H
T ss_pred Cccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHHHHHHHHHH-h
Confidence 8874 455677899999999999 788887764220 124577778777 7
Q ss_pred CeeeEEEcCCcceEEEEeC
Q 023384 265 SHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~ 283 (283)
..+++........++.++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 175 GNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp SCCEEEEEETTEEEEEEEC
T ss_pred cceEEEecCCcEEEEEEee
Confidence 7777776655566676665
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-14 Score=113.02 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=82.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC-CceEEEecccccC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHG 188 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~ 188 (283)
.....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 3455799999999999999999885 58999999 777776654 4589999999998 433 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 189 LGD-EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 189 ~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+++ +...++|++++++|+| ||.+++...
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 997 5566899999999999 788877664
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.1e-14 Score=115.72 Aligned_cols=145 Identities=9% Similarity=0.020 Sum_probs=90.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-HHH-hc---CCC------CCCeEEEEcCCCC-CCCCceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLP-HVV-AN---LPE------ADNLKYIAGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~-~~---a~~------~~rv~~~~~d~~~-~~p~~D~v~~~~ 184 (283)
....+|||||||+|.++..++++.|+.+++++|+. +.+ +. +++ ..++.++.+|..+ +...+|+|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 45579999999999999999999999999999993 554 33 343 3579999999887 322245555444
Q ss_pred cccCCChh------HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHH
Q 023384 185 VFHGLGDE------DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 258 (283)
Q Consensus 185 vlh~~~d~------~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 258 (283)
+.+.|+.. +...+|++++++||| ||++++....... ....++ ....... ........+++.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~-~~~~~~----~~~~~~~---~~~~~~~~~el~~~ 171 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDS-YEEAEI----KKRGLPL---LSKAYFLSEQYKAE 171 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEecccc-chhchh----hhcCCCC---CChhhcchHHHHHH
Confidence 44434331 113679999999999 7888884433322 111000 0000000 00011122359999
Q ss_pred HHHCCCCeeeEEEc
Q 023384 259 FFDACFSHYKITPI 272 (283)
Q Consensus 259 l~~aGf~~~~~~~~ 272 (283)
++++||++.++...
T Consensus 172 l~~aGf~v~~~~~~ 185 (225)
T 3p2e_A 172 LSNSGFRIDDVKEL 185 (225)
T ss_dssp HHHHTCEEEEEEEE
T ss_pred HHHcCCCeeeeeec
Confidence 99999998877654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-14 Score=115.11 Aligned_cols=135 Identities=19% Similarity=0.242 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCC-------CCceEEEec
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFI-------PPADAFLFK 183 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~-------p~~D~v~~~ 183 (283)
....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+++ ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5668999999999999999999999999999999 888887775 126888999988732 359999996
Q ss_pred cccc------CCChhHH------------------HHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc
Q 023384 184 LVFH------GLGDEDG------------------LKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI 239 (283)
Q Consensus 184 ~vlh------~~~d~~~------------------~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~ 239 (283)
-.+| +++++.. ..++++++++|+| ||.+++++...
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~------------------ 167 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH------------------ 167 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC------------------
Confidence 4443 3333222 6889999999999 78866665311
Q ss_pred ccccccCCccCCHHHHHHHHH--HCCCCeeeEEEcC-CcceEEEEe
Q 023384 240 VMSVNATGKERTESEWAKLFF--DACFSHYKITPIF-GMRFLIEIY 282 (283)
Q Consensus 240 ~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~-~~~~~i~~~ 282 (283)
...+++.++++ ++||..+++.... +...++.++
T Consensus 168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~ 203 (215)
T 4dzr_A 168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT 203 (215)
T ss_dssp ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence 13567888899 9999988877653 445555554
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=114.03 Aligned_cols=96 Identities=14% Similarity=0.228 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCccH----HHHHHHHHCC----CCeEEEeec-hHHHhcCCCC----------------------------
Q 023384 118 GLGSLVDVGGGNGS----LSRIISEAFP----GIKCTVLDL-PHVVANLPEA---------------------------- 160 (283)
Q Consensus 118 ~~~~vlDvGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 160 (283)
+..+|+|+|||||. +++.+++.+| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 34799999999998 5666677655 468999999 8888766431
Q ss_pred ---------CCeEEEEcCCCC-CCC---CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 161 ---------DNLKYIAGDMFQ-FIP---PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 161 ---------~rv~~~~~d~~~-~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.+|.|..+|+.+ +++ .||+|+++++|++++++...+++++++++|+| ||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 369999999998 554 49999999999999998889999999999999 666655
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-14 Score=119.18 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC---CCC--CceEEEe---
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ---FIP--PADAFLF--- 182 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~---~~p--~~D~v~~--- 182 (283)
....+|||||||+|..+..+++..|. +++++|+ |.+++.+++ ..+++++.+|... +++ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45689999999999999999887774 7999999 888887764 5678888888754 344 3898875
Q ss_pred --cccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHH
Q 023384 183 --KLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 260 (283)
Q Consensus 183 --~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 260 (283)
...++++.+ ...++++++++||| ||++++.+........ ....+ .-.....+.+...|.
T Consensus 138 ~~~~~~~~~~~--~~~~~~e~~rvLkP---GG~l~f~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~L~ 198 (236)
T 3orh_A 138 PLSEETWHTHQ--FNFIKNHAFRLLKP---GGVLTYCNLTSWGELM-------KSKYS-------DITIMFEETQVPALL 198 (236)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEE---EEEEEECCHHHHHHHT-------TTTCS-------CHHHHHHHHTHHHHH
T ss_pred ecccchhhhcc--hhhhhhhhhheeCC---CCEEEEEecCCchhhh-------hhhhh-------hhhhhhHHHHHHHHH
Confidence 344555545 45889999999999 7887765422110000 00000 000112456677889
Q ss_pred HCCCCeeeE
Q 023384 261 DACFSHYKI 269 (283)
Q Consensus 261 ~aGf~~~~~ 269 (283)
++||++..+
T Consensus 199 eaGF~~~~i 207 (236)
T 3orh_A 199 EAGFRRENI 207 (236)
T ss_dssp HHTCCGGGE
T ss_pred HcCCeEEEE
Confidence 999997654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-13 Score=114.14 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------------CCCeEEEEcCCCC-C----C--C
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------------ADNLKYIAGDMFQ-F----I--P 175 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~rv~~~~~d~~~-~----~--p 175 (283)
....+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 4668999999999999999887 46789999999 777766653 1378999999987 4 3 2
Q ss_pred --CceEEEecccccCC--ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 176 --PADAFLFKLVFHGL--GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 176 --~~D~v~~~~vlh~~--~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.||+|++..++|+. +.++...+|++++++|+| ||.+++..+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecC
Confidence 59999999999987 445677999999999999 788777655
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=120.51 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=89.1
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEEc
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------------ADNLKYIAG 168 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~ 168 (283)
..+++ .+. .....+|||||||+|..++.++..++..+++++|+ +.+++.|++ ..+|+|+.+
T Consensus 163 ~~il~-~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 163 AQMID-EIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHH-HHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHH-hcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 34444 444 66778999999999999999999888777999999 665554432 268999999
Q ss_pred CCCC-CC----CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCc
Q 023384 169 DMFQ-FI----PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEE 225 (283)
Q Consensus 169 d~~~-~~----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~ 225 (283)
|+++ ++ +.+|+|++..+++ + ++....|+++++.||| ||+|++.|.+.++..
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred cccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 9998 65 3599999987764 3 3445778999999999 899999999888754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=106.67 Aligned_cols=94 Identities=12% Similarity=0.200 Sum_probs=77.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC----CCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI----PPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~----p~~D~v~~~ 183 (283)
.....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .+++ ++.+|..+.+ +.||+|++.
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence 55667999999999999999999999999999999 777776653 3378 8889887632 359999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..+|+ ..+++++++.|+| ||++++.+.
T Consensus 102 ~~~~~------~~~l~~~~~~L~~---gG~l~~~~~ 128 (178)
T 3hm2_A 102 GGLTA------PGVFAAAWKRLPV---GGRLVANAV 128 (178)
T ss_dssp C-TTC------TTHHHHHHHTCCT---TCEEEEEEC
T ss_pred CcccH------HHHHHHHHHhcCC---CCEEEEEee
Confidence 99986 4779999999999 788887663
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=106.40 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=94.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHH----hcCCCCCCeEEEEcCCCCC-----CC-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV----ANLPEADNLKYIAGDMFQF-----IP-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~rv~~~~~d~~~~-----~p-~~D~v~~~~ 184 (283)
.....+|||||||+|.++..+++..++.+++++|+ +.++ +.+++..++.++.+|...+ ++ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45668999999999999999999988779999999 6543 3333346788999988763 22 49999986
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH----HHHH
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA----KLFF 260 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll~ 260 (283)
+.+ .++...++++++++||| ||++++.-...+ .+ ...+.+++. +.++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~--------------~~---------~~~~~~~~~~~~~~~l~ 184 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARS--------------ID---------STAEPEEVFKSVLKEME 184 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHH--------------HC---------TTSCHHHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCC--------------cc---------ccCCHHHHHHHHHHHHH
Confidence 322 23344569999999999 788888732110 00 001233331 2388
Q ss_pred HCCCCeeeEEEcCC---cceEEEEeC
Q 023384 261 DACFSHYKITPIFG---MRFLIEIYP 283 (283)
Q Consensus 261 ~aGf~~~~~~~~~~---~~~~i~~~~ 283 (283)
++ |++++...... .+.++.++|
T Consensus 185 ~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 185 GD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp TT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred hh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 88 99999887732 467777764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.4e-13 Score=124.54 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=85.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------------CCCeEEEEcCCCC-CCC--Cce
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------------ADNLKYIAGDMFQ-FIP--PAD 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~rv~~~~~d~~~-~~p--~~D 178 (283)
.....+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3467899999999999999999998 5679999999 777776643 3579999999998 554 499
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+|++..++||++++....+++++++.|+| | .++|..+
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTP 835 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTP 835 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEEC
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEec
Confidence 99999999999999888999999999999 5 5555554
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-13 Score=110.52 Aligned_cols=141 Identities=10% Similarity=0.071 Sum_probs=95.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHH----hcCCCCCCeEEEEcCCCCC--C----CCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVV----ANLPEADNLKYIAGDMFQF--I----PPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~----~~a~~~~rv~~~~~d~~~~--~----p~~D~v~~~ 183 (283)
+....+|||+|||+|.++..+++.+ |..+++++|+ +.++ +.+++..+++++.+|+.++ + ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4566899999999999999999986 7889999999 5543 3333347899999999872 2 249999984
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
.. ..+....++++++++|+| ||.+++ ........... . ...+-..+ .++|+++|
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i-~~~~~~~~~~~---------~--------~~~~~~~~-~~~l~~~G 208 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVI-SIKANCIDSTA---------S--------AEAVFASE-VKKMQQEN 208 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEE-EEEHHHHCSSS---------C--------HHHHHHHH-HHTTGGGT
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEE-EEcccccccCC---------C--------HHHHHHHH-HHHHHHCC
Confidence 43 333445678999999999 677777 32221000000 0 00001123 58899999
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|+++++..... .+.+++++
T Consensus 209 f~~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 209 MKPQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEEEECTTTSSSEEEEEEE
T ss_pred CceEEEEecCCccCCcEEEEEE
Confidence 99998776643 25666654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-13 Score=111.46 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=98.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCC--CCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFI--PPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~--p~~D~v~~~~vlh 187 (283)
..+..+|||+|||+|.+++.+++..+ +++++|+ +.+++.+++ .-.+++..+|+.+++ ..||+|++....|
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence 45668999999999999999888765 9999999 777776654 112899999987744 2599999865443
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
....+++++++.|+| ||++++.+.... +.+++.++++++||+++
T Consensus 196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred -----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEE
Confidence 356889999999999 788887653221 36789999999999999
Q ss_pred eEEEcCCcceEE
Q 023384 268 KITPIFGMRFLI 279 (283)
Q Consensus 268 ~~~~~~~~~~~i 279 (283)
++....++.+++
T Consensus 240 ~~~~~~~W~~l~ 251 (254)
T 2nxc_A 240 EEAAEGEWVLLA 251 (254)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCeEEEE
Confidence 988877776654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-13 Score=113.92 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=97.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC-------CeEEEEcCCCC---------CCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----AD-------NLKYIAGDMFQ---------FIP 175 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-------rv~~~~~d~~~---------~~p 175 (283)
...+|||||||+|..+..+++. ...+++++|+ +.+++.|++ .. +++|...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4579999999999877766654 3468999999 888888775 21 26788888722 123
Q ss_pred --CceEEEecccccC-CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc---hhhh--hh----hhhcc-----
Q 023384 176 --PADAFLFKLVFHG-LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE---HELT--ET----KFLFD----- 238 (283)
Q Consensus 176 --~~D~v~~~~vlh~-~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~---~~~~--~~----~~~~~----- 238 (283)
.||+|++..++|+ +.+++..++|++++++||| ||.+++..+........ ..+. .. ..+..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence 4999999999986 4545567999999999999 78887765421110000 0000 00 00000
Q ss_pred ---cccccccC------CccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 239 ---IVMSVNAT------GKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 239 ---~~~~~~~~------~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
+..+...+ -...+.+++.++++++||++++....
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000011 12457899999999999999887653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-13 Score=104.25 Aligned_cols=132 Identities=13% Similarity=0.085 Sum_probs=91.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC-CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~v 185 (283)
+....+|||||||+|.++..++...|+.+++++|+ +.+++.+++ ..++++ .|..+ +.+ .||+|++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 45678999999999999999999999999999999 888877764 224555 67666 334 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCcc-CCHHHHHHHHHHCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKE-RTESEWAKLFFDACF 264 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~e~~~ll~~aGf 264 (283)
||++ ++. ...+.++.++|+| ||.++-.+ ...=.+.. .|.+ .-...|++.+ ...+
T Consensus 125 LHlL-~~~-~~al~~v~~~L~p---ggvfISfp-tksl~Gr~------------------~gm~~~Y~~~~~~~~-~~~~ 179 (200)
T 3fzg_A 125 LPVL-KQQ-DVNILDFLQLFHT---QNFVISFP-IKSLSGKE------------------KGMEENYQLWFESFT-KGWI 179 (200)
T ss_dssp HHHH-HHT-TCCHHHHHHTCEE---EEEEEEEE-CCCCC--C------------------TTCCCCHHHHHHHHT-TTTS
T ss_pred HHhh-hhh-HHHHHHHHHHhCC---CCEEEEeC-hHHhcCCC------------------cchhhhHHHHHHHhc-cCcc
Confidence 9999 432 3556699999999 44444444 22111111 1222 2256677777 5556
Q ss_pred CeeeEEEcCC
Q 023384 265 SHYKITPIFG 274 (283)
Q Consensus 265 ~~~~~~~~~~ 274 (283)
.+++....++
T Consensus 180 ~~~~~~~~~n 189 (200)
T 3fzg_A 180 KILDSKVIGN 189 (200)
T ss_dssp CEEEEEEETT
T ss_pred eeeeeeeeCc
Confidence 6776666654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=107.12 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=98.8
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCC--CCCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMF--QFIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~--~~~p--~~D~v~~~~ 184 (283)
.+...+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+. .+++ .||+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 789999999 888877764 337999999964 3443 499999987
Q ss_pred cccCCChhH-----------------HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCC
Q 023384 185 VFHGLGDED-----------------GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG 247 (283)
Q Consensus 185 vlh~~~d~~-----------------~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
.+|..++.. ...+++++.+.|+| ||++++.-....
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence 776544322 36889999999999 788877532110
Q ss_pred ccCCHHHHHHHHHHCCCCeeeEEEcCCc--ceEEEEe
Q 023384 248 KERTESEWAKLFFDACFSHYKITPIFGM--RFLIEIY 282 (283)
Q Consensus 248 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~--~~~i~~~ 282 (283)
...+++.++++++||++..+....+. ..++...
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~ 218 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFF 218 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEE
T ss_pred --hHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEe
Confidence 12578889999999977766555443 4455543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-14 Score=119.91 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCC----CCCC-----CceEE
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMF----QFIP-----PADAF 180 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~----~~~p-----~~D~v 180 (283)
...+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|.. ++++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 457999999999999999999988999999999 888877654 357999999853 3343 49999
Q ss_pred EecccccCCCh-------------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCC
Q 023384 181 LFKLVFHGLGD-------------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG 247 (283)
Q Consensus 181 ~~~~vlh~~~d-------------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
++.-..|.... +....++++++++|+| ||++.+++.+..... .......++....+
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~~~--------~~l~~~g~~~~~~~ 213 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHDSL--------QLKKRLRWYSCMLG 213 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHHHH--------HHGGGBSCEEEEES
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHHHH--------hcccceEEEEECCC
Confidence 99866664431 1123567889999999 788877765432210 00011111111224
Q ss_pred ccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 248 KERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 248 ~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
...+.+++.++++++||+.+++...
T Consensus 214 ~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 214 KKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp STTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred ChhHHHHHHHHHHHcCCCceEEEEE
Confidence 4455689999999999999887665
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=107.07 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=99.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCC----CCCCeEEEEcCCCCC--CC----CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLP----EADNLKYIAGDMFQF--IP----PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~~~rv~~~~~d~~~~--~p----~~D~v~~~ 183 (283)
++++.+|||+|||+|.++..+++. .|+-+++++|+ +++++.+. +..++..+.+|...+ .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999997 59999999999 87776543 357899999988763 11 38988753
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
. ++.. +...++++++++||| ||+++|...........+ .+. ..++..+.|+++|
T Consensus 155 ~--~~~~--~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~p------------------~~~-~~~~ev~~L~~~G 208 (233)
T 4df3_A 155 V--AQPE--QAAIVVRNARFFLRD---GGYMLMAIKARSIDVTTE------------------PSE-VYKREIKTLMDGG 208 (233)
T ss_dssp C--CCTT--HHHHHHHHHHHHEEE---EEEEEEEEECCHHHHHTC------------------CCH-HHHHHHHHHHHTT
T ss_pred c--cCCh--hHHHHHHHHHHhccC---CCEEEEEEecccCCCCCC------------------hHH-HHHHHHHHHHHCC
Confidence 3 2222 345789999999999 799888653222111110 000 1234456789999
Q ss_pred CCeeeEEEcCC---cceEEEEe
Q 023384 264 FSHYKITPIFG---MRFLIEIY 282 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~ 282 (283)
|+..+...... .+.++.++
T Consensus 209 F~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 209 LEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp CCEEEEEECTTTSTTEEEEEEC
T ss_pred CEEEEEEccCCCCCceEEEEEE
Confidence 99999888744 36776664
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.3e-13 Score=108.25 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=84.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
+....+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 456689999999999999999998665 8999999 777776654 3689999999988 655 499999998887
Q ss_pred CCC-------------hhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 188 GLG-------------DEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 188 ~~~-------------d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
++. .++..++|++++++|+| ||++++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 665 44567999999999999 79988887543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=112.19 Aligned_cols=129 Identities=11% Similarity=0.097 Sum_probs=93.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC-C---CC-CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ-F---IP-PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~-~---~p-~~D~v 180 (283)
+...+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..|++++.+|..+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998878889999999 777766543 3689999999876 2 12 49999
Q ss_pred EecccccCCChhHH--HHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHH
Q 023384 181 LFKLVFHGLGDEDG--LKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 258 (283)
Q Consensus 181 ~~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 258 (283)
++....+.+++... ..++++++++|+| ||.+++.... + +. ......++.+.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~-~-------------~~----------~~~~~~~~~~~ 226 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGES-I-------------WL----------DLELIEKMSRF 226 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECC-T-------------TT----------CHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCC-c-------------cc----------chHHHHHHHHH
Confidence 99777766554433 5889999999999 6777765311 0 00 01136788899
Q ss_pred HHHCCCCeeeEEEc
Q 023384 259 FFDACFSHYKITPI 272 (283)
Q Consensus 259 l~~aGf~~~~~~~~ 272 (283)
++++||..++++..
T Consensus 227 l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 227 IRETGFASVQYALM 240 (304)
T ss_dssp HHHHTCSEEEEEEC
T ss_pred HHhCCCCcEEEEEe
Confidence 99999999887654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-12 Score=104.39 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=98.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhc----CCCCCCeEEEEcCCCCC-----CC-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVAN----LPEADNLKYIAGDMFQF-----IP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~----a~~~~rv~~~~~d~~~~-----~p-~~D~v~~~ 183 (283)
+....+|||+|||+|.++..+++.+ |..+++++|+ +.+++. +++..+++++.+|+.++ .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4566899999999999999999885 6789999999 655443 33347899999999872 23 49999975
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
.. ..+....++++++++|+| ||.+++. .........+ .......+++.++ +++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~-----------------~~~~~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK-----------------EPEQVFREVEREL-SEY- 203 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS-----------------CHHHHHHHHHHHH-HTT-
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCC-----------------ChhhhhHHHHHHH-Hhh-
Confidence 43 222334559999999999 7888887 2221111110 0011236777777 777
Q ss_pred CCeeeEEEcCCc---ceEEEEeC
Q 023384 264 FSHYKITPIFGM---RFLIEIYP 283 (283)
Q Consensus 264 f~~~~~~~~~~~---~~~i~~~~ 283 (283)
|++++....... +.+++++|
T Consensus 204 f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred ceeeeEeccCcccCCCEEEEEEe
Confidence 999988877544 66777765
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-13 Score=112.16 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=79.8
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-C------C
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-F------I 174 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~------~ 174 (283)
..+++ .++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ... ++..++.+ + .
T Consensus 35 ~~il~-~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 35 ENDIF-LEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHH-TTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCGGG
T ss_pred HHHHH-hcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc--cceeeeeeccccccccc
Confidence 44455 444 667789999999999999999987 568999999 888877764 111 22233322 1 1
Q ss_pred -CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 175 -PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 175 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..||+|++..++|++++++...++++++++| | ||++++...
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 2599999999999999988899999999999 9 788887643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=111.64 Aligned_cols=124 Identities=14% Similarity=0.193 Sum_probs=96.8
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC-
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP- 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p- 175 (283)
.++. .++ .....+|||+|||+|.++..+++. .|..+++++|+ ++.++.+++ .++++++.+|+.+.++
T Consensus 84 ~i~~-~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 84 LIVA-YAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHH-hhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 3444 444 667789999999999999999999 88999999999 788777664 3569999999998655
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHH
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 254 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 254 (283)
.||+|++ +.++.. .+++++.++|+| ||++++...... ..++
T Consensus 161 ~~~D~v~~-----~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~ 202 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQPE--RVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMR 202 (255)
T ss_dssp CSEEEEEE-----CSSCGG--GGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred CCcCEEEE-----CCCCHH--HHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHH
Confidence 4999987 345543 679999999999 788887652210 2456
Q ss_pred HHHHHHHCC--CCeeeEE
Q 023384 255 WAKLFFDAC--FSHYKIT 270 (283)
Q Consensus 255 ~~~ll~~aG--f~~~~~~ 270 (283)
+.++++++| |..+++.
T Consensus 203 ~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 203 LHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp HHHHHHHTGGGBSCCEEE
T ss_pred HHHHHHHcCCCccccEEE
Confidence 778889999 8877764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-13 Score=114.90 Aligned_cols=118 Identities=15% Similarity=0.123 Sum_probs=92.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC----C---CCeEEEEcCCCCCCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE----A---DNLKYIAGDMFQFIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~rv~~~~~d~~~~~p--~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++. .|..+++++|+ +..++.+++ . ++++++.+|+.++++ .||+|++
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~-- 185 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIA-- 185 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEE--
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEE--
Confidence 567789999999999999999998 78999999999 777766553 2 579999999988654 4999998
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
++++.. ++|+++.++|+| ||++++...... ..+++.++++++||
T Consensus 186 ---~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~~~~l~~~Gf 229 (275)
T 1yb2_A 186 ---DIPDPW--NHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKTVLSLSASGM 229 (275)
T ss_dssp ---CCSCGG--GSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHHHHHSGGGTE
T ss_pred ---cCcCHH--HHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHHHHHHHHCCC
Confidence 345543 789999999999 788888763210 13456677778888
Q ss_pred CeeeEEE
Q 023384 265 SHYKITP 271 (283)
Q Consensus 265 ~~~~~~~ 271 (283)
+.+++..
T Consensus 230 ~~~~~~~ 236 (275)
T 1yb2_A 230 HHLETVE 236 (275)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 8777654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=102.71 Aligned_cols=113 Identities=21% Similarity=0.291 Sum_probs=89.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC---CCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI---PPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~---p~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++.. .+++++|+ +..++.+++ ..++.+..+|+.+++ +.||+|++..
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECC
Confidence 5667899999999999999999987 79999999 777776654 268999999987622 4699999998
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
++|++ ..+++++.+.|+| ||.+++..... .+..++.+++++.||
T Consensus 109 ~~~~~-----~~~l~~~~~~l~~---gG~l~~~~~~~----------------------------~~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 109 SGGEL-----QEILRIIKDKLKP---GGRIIVTAILL----------------------------ETKFEAMECLRDLGF 152 (192)
T ss_dssp CTTCH-----HHHHHHHHHTEEE---EEEEEEEECBH----------------------------HHHHHHHHHHHHTTC
T ss_pred chHHH-----HHHHHHHHHhcCC---CcEEEEEecCc----------------------------chHHHHHHHHHHCCC
Confidence 87643 5789999999999 78887765311 024678889999999
Q ss_pred Ce
Q 023384 265 SH 266 (283)
Q Consensus 265 ~~ 266 (283)
.+
T Consensus 153 ~~ 154 (192)
T 1l3i_A 153 DV 154 (192)
T ss_dssp CC
T ss_pred ce
Confidence 43
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=112.15 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC---CCC--CceEEEe-cc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ---FIP--PADAFLF-KL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~---~~p--~~D~v~~-~~ 184 (283)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4567999999999999999966543 48999999 888776654 4679999999875 344 4999998 55
Q ss_pred c--ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 185 V--FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 185 v--lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
. .+++.......++++++++||| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 4 4444445556789999999999 7888887643
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-13 Score=110.12 Aligned_cols=120 Identities=16% Similarity=0.126 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CC-----CCceEEEec
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FI-----PPADAFLFK 183 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~-----p~~D~v~~~ 183 (283)
....+|||||||+|..+..++...|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4568999999999999999999999999999999 777776654 2469999999877 43 249999987
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
.+ .+ ...+++.+.+.|+| ||.+++..... .. ...+++.+.++++|
T Consensus 149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~----~~----------------------~~~~~~~~~l~~~g 193 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKK---NGLFVALKAAS----AE----------------------EELNAGKKAITTLG 193 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEE---EEEEEEEECC-----CH----------------------HHHHHHHHHHHHTT
T ss_pred cc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC----ch----------------------HHHHHHHHHHHHcC
Confidence 63 23 45889999999999 78887753110 00 01356778899999
Q ss_pred CCeeeEEE
Q 023384 264 FSHYKITP 271 (283)
Q Consensus 264 f~~~~~~~ 271 (283)
|++.++..
T Consensus 194 ~~~~~~~~ 201 (240)
T 1xdz_A 194 GELENIHS 201 (240)
T ss_dssp EEEEEEEE
T ss_pred CeEeEEEE
Confidence 99887654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-12 Score=104.51 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC--CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP--PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p--~~D~v~~~~v 185 (283)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.++.+|+.+ + ++ .+|+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457999999999999999999999999999999 888777654 3689999999987 4 44 3999998765
Q ss_pred ccCCChh------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 186 FHGLGDE------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 186 lh~~~d~------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+..... ....+|+++.++|+| ||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 4322111 124789999999999 78877743
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-12 Score=103.09 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=89.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---CCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---IPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~p~~D~v~~~~ 184 (283)
.....+|||||||+|.++..+++. ..+++++|+ +++++.+++ .++++++.+|+.+. .+.||+|++..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGG 130 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECC
Confidence 566789999999999999999988 789999999 888877654 23899999999882 34699999877
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
.+ + .. +++++.+.|+| ||++++..... .+..++.+++++.|+
T Consensus 131 ~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~~----------------------------~~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 131 GG----S--QA-LYDRLWEWLAP---GTRIVANAVTL----------------------------ESETLLTQLHARHGG 172 (204)
T ss_dssp CC----C--HH-HHHHHHHHSCT---TCEEEEEECSH----------------------------HHHHHHHHHHHHHCS
T ss_pred cc----c--HH-HHHHHHHhcCC---CcEEEEEecCc----------------------------ccHHHHHHHHHhCCC
Confidence 44 2 23 89999999999 78887754311 035677888999998
Q ss_pred CeeeE
Q 023384 265 SHYKI 269 (283)
Q Consensus 265 ~~~~~ 269 (283)
++.++
T Consensus 173 ~i~~i 177 (204)
T 3njr_A 173 QLLRI 177 (204)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 87765
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.6e-13 Score=106.37 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=73.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEecccccCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLVFHGL 189 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~vlh~~ 189 (283)
..+|||||||+|..+..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..+ +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~-- 142 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C--
Confidence 57999999999999999999999999999999 777766653 2459999999988332 5999997543 2
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+ ...+++++++.|+| ||.+++.
T Consensus 143 -~--~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 143 -S--LNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp -S--HHHHHHHHTTSEEE---EEEEEEE
T ss_pred -C--HHHHHHHHHHhcCC---CcEEEEE
Confidence 2 35889999999999 6877775
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=102.83 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=75.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C-C-C-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F-I-P-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~-~-p-~~D~v~~~~ 184 (283)
+....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .++++++..|... + . + .||+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999988 789999999 888877765 2789999977665 2 3 3 499998763
Q ss_pred -cccCC------ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 -VFHGL------GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 -vlh~~------~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.+++- ..+....+|+++.+.||| ||++++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 136 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIY 136 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEe
Confidence 33320 234567889999999999 788888764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.6e-12 Score=109.80 Aligned_cols=97 Identities=11% Similarity=0.045 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC-----CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-----PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-----~~D~v~~~~v 185 (283)
...+||||| |+|.++..+++..|+.+++++|+ +.+++.+++ ..+++++.+|+.+++| .||+|++...
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 458999999 99999999999988889999999 888887765 2389999999988433 4999999887
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+|... ...+|++++++|+| ||++++++...
T Consensus 251 ~~~~~---~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 251 ETLEA---IRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp SSHHH---HHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred CchHH---HHHHHHHHHHHccc---CCeEEEEEEec
Confidence 76442 47899999999999 78776766543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-12 Score=104.00 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=101.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC---CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP---PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p---~~D~v~~~~ 184 (283)
.++..+|+|||||+|.+++.+++..|..+++++|+ +..++.|++ .++|++..+|.+++++ .||+|++..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG 92 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG 92 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence 45567999999999999999999999999999999 888777764 4689999999998654 499998865
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
. ..+-...||..+.+.|+| +|++++ .+.. ..+.++++|.+.||
T Consensus 93 ~----Gg~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 93 M----GGRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGF 135 (225)
T ss_dssp E----CHHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTE
T ss_pred C----ChHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCC
Confidence 4 334467899999999998 566555 4221 25678899999999
Q ss_pred CeeeEE--EcCC-cceEEEEe
Q 023384 265 SHYKIT--PIFG-MRFLIEIY 282 (283)
Q Consensus 265 ~~~~~~--~~~~-~~~~i~~~ 282 (283)
.+++.. .-.+ +.-+|.+.
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~ 156 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVE 156 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 998754 2233 56666664
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-13 Score=110.27 Aligned_cols=114 Identities=9% Similarity=0.082 Sum_probs=88.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC--CCC---CceEEEecccccC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ--FIP---PADAFLFKLVFHG 188 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~--~~p---~~D~v~~~~vlh~ 188 (283)
.....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---- 119 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---- 119 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence 355689999999999999999998 679999999 888877765 6789999999965 444 499999872
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
+ ...+|++++++|+| ||.++.. +...+.+++.++++++||+..+
T Consensus 120 --~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 120 --G--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp --C--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEE
T ss_pred --C--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEE
Confidence 2 23779999999999 6777600 1112456788899999998877
Q ss_pred EEE
Q 023384 269 ITP 271 (283)
Q Consensus 269 ~~~ 271 (283)
+..
T Consensus 164 ~~~ 166 (226)
T 3m33_A 164 EDH 166 (226)
T ss_dssp EEE
T ss_pred EEe
Confidence 644
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-12 Score=102.28 Aligned_cols=142 Identities=11% Similarity=0.069 Sum_probs=95.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHH----hcCCCCCCeEEEEcCCCCC-----C-CCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVV----ANLPEADNLKYIAGDMFQF-----I-PPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~rv~~~~~d~~~~-----~-p~~D~v~~~ 183 (283)
+.+..+|||+|||+|.++..+++. .|+.+++++|+ +.++ +.+++..++.++.+|...+ + ..||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567789999999999999999986 46889999999 6553 3333356899999998762 1 249999886
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
... ++ ....+++.+++.||| ||++++.......+... ...+ ..++..+.|+++|
T Consensus 154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~d~t~------------------~~~e-~~~~~~~~L~~~g 207 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSIDVTK------------------DPKE-IYKTEVEKLENSN 207 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC-------C------------------CSSS-STTHHHHHHHHTT
T ss_pred CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCcccCC------------------CHHH-HHHHHHHHHHHCC
Confidence 443 22 223345566679999 78888863211100000 0111 1234556788999
Q ss_pred CCeeeEEEcCC---cceEEEEeC
Q 023384 264 FSHYKITPIFG---MRFLIEIYP 283 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~~ 283 (283)
|++.+...... .+.++++++
T Consensus 208 f~~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 208 FETIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp EEEEEEEECTTTCSSCEEEEEEE
T ss_pred CEEEEEeccCCCcCceEEEEEEe
Confidence 99999888743 477877764
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=104.90 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=80.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C-CC--CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F-IP--PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~-~p--~~D~v~~ 182 (283)
.....+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..+++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 5566899999999999999999986 7789999999 788877664 2689999999876 3 32 4999998
Q ss_pred ccccc-------CCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 183 KLVFH-------GLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 183 ~~vlh-------~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
...+. ....++..++++++.++|+| ||++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~ 141 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYY 141 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEcc
Confidence 76551 11233456799999999999 7888887643
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=109.01 Aligned_cols=121 Identities=11% Similarity=0.015 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CC-----CCceEEEec
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FI-----PPADAFLFK 183 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~-----p~~D~v~~~ 183 (283)
....+|||||||+|..+..++..+|+.+++++|+ +..++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4568999999999999999999999999999999 777776654 3469999999887 43 259999987
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
.+ .+ ...+++.+.+.|+| ||++++....... . ...++.+.+++.|
T Consensus 159 a~----~~--~~~ll~~~~~~Lkp---gG~l~~~~g~~~~---~-----------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 159 AV----AP--LCVLSELLLPFLEV---GGAAVAMKGPRVE---E-----------------------ELAPLPPALERLG 203 (249)
T ss_dssp SS----CC--HHHHHHHHGGGEEE---EEEEEEEECSCCH---H-----------------------HHTTHHHHHHHHT
T ss_pred Cc----CC--HHHHHHHHHHHcCC---CeEEEEEeCCCcH---H-----------------------HHHHHHHHHHHcC
Confidence 54 22 34789999999999 7888875521100 0 1345677888899
Q ss_pred CCeeeEEEc
Q 023384 264 FSHYKITPI 272 (283)
Q Consensus 264 f~~~~~~~~ 272 (283)
|+..++.+.
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 998887654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=108.87 Aligned_cols=95 Identities=17% Similarity=0.266 Sum_probs=79.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCCCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIPPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p~~D~v~~~~vlh 187 (283)
+....+|||||||+|.++..++.+.++.+++++|+ +++++.|++ .++++|+.+|..+ +...||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 66789999999999988877777788999999999 888888775 3789999999988 5345999998654
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.++ ..++++++++.||| ||++++.+
T Consensus 198 -~~d--~~~~l~el~r~LkP---GG~Lvv~~ 222 (298)
T 3fpf_A 198 -AEP--KRRVFRNIHRYVDT---ETRIIYRT 222 (298)
T ss_dssp -CSC--HHHHHHHHHHHCCT---TCEEEEEE
T ss_pred -ccC--HHHHHHHHHHHcCC---CcEEEEEc
Confidence 233 45889999999999 79988876
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-12 Score=102.74 Aligned_cols=130 Identities=8% Similarity=-0.041 Sum_probs=100.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC-C--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI-P--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~-p--~~D~v~~~~ 184 (283)
.++..+|+|||||+|.+++.+++..|..+++++|+ +..++.|++ .+++++..+|.++.+ + .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 45568999999999999999999999999999999 888877764 568999999999943 3 499998766
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
+. -+-..+||....+.|++ +|++++.- .. ..++++++|.+.||
T Consensus 99 mG----g~lI~~IL~~~~~~l~~---~~~lIlqp-~~-----------------------------~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 99 MG----GRLIADILNNDIDKLQH---VKTLVLQP-NN-----------------------------REDDLRKWLAANDF 141 (230)
T ss_dssp EC----HHHHHHHHHHTGGGGTT---CCEEEEEE-SS-----------------------------CHHHHHHHHHHTTE
T ss_pred Cc----hHHHHHHHHHHHHHhCc---CCEEEEEC-CC-----------------------------ChHHHHHHHHHCCC
Confidence 53 35577899999999998 56655432 11 26788999999999
Q ss_pred CeeeEEEc---CCcceEEEEe
Q 023384 265 SHYKITPI---FGMRFLIEIY 282 (283)
Q Consensus 265 ~~~~~~~~---~~~~~~i~~~ 282 (283)
.+.+..-. .-+.-||.+.
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 99875432 2356677664
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-12 Score=112.66 Aligned_cols=106 Identities=22% Similarity=0.347 Sum_probs=84.2
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCCCCC-
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQFIP- 175 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~~p- 175 (283)
+++ .++ .....+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++|+.+|++++++
T Consensus 214 ll~-~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 214 FMQ-HLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHH-TCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHH-hCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 455 444 33448999999999999999999999999999999 777777664 1258899999999655
Q ss_pred -CceEEEecccccC---CChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 -PADAFLFKLVFHG---LGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 -~~D~v~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.||+|++.-.+|+ ..+....++++++++.|+| ||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence 4999999999885 3455566899999999999 78888864
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=114.21 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=87.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC-Cc
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP-PA 177 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p-~~ 177 (283)
..+++ .++ .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...++++.+|+++..+ .|
T Consensus 186 ~~ll~-~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f 262 (343)
T 2pjd_A 186 QLLLS-TLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF 262 (343)
T ss_dssp HHHHH-HSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred HHHHH-hcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence 34455 443 23457999999999999999999999999999999 777776654 3346789999988433 59
Q ss_pred eEEEecccccC---CChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 178 DAFLFKLVFHG---LGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 178 D~v~~~~vlh~---~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
|+|++..++|+ +..+...+++++++++|+| ||.++++..
T Consensus 263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~ 304 (343)
T 2pjd_A 263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN 304 (343)
T ss_dssp EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred eEEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence 99999999986 3456678999999999999 799888764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-12 Score=104.83 Aligned_cols=135 Identities=14% Similarity=0.167 Sum_probs=98.8
Q ss_pred cC-CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C--CC--CceEEE
Q 023384 116 FE-GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F--IP--PADAFL 181 (283)
Q Consensus 116 ~~-~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p--~~D~v~ 181 (283)
.. ...+|||+|||+|.++..++++.+. +++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 45 6789999999999999999999776 9999999 777776654 4589999999988 3 32 499999
Q ss_pred ecccccCC------------------ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccc
Q 023384 182 FKLVFHGL------------------GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSV 243 (283)
Q Consensus 182 ~~~vlh~~------------------~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
+.-.++.. .......+++.+.+.|+| ||+++++- +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~---~~-------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVH---RP-------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEE---CT--------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEE---cH--------------------
Confidence 96544322 113346799999999999 78887742 11
Q ss_pred ccCCccCCHHHHHHHHHHCCCCeeeEEEc---CC---cceEEEEeC
Q 023384 244 NATGKERTESEWAKLFFDACFSHYKITPI---FG---MRFLIEIYP 283 (283)
Q Consensus 244 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~---~~---~~~~i~~~~ 283 (283)
....++.+++++.||...++... ++ ...+++++|
T Consensus 179 ------~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 179 ------ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp ------TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred ------HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 13567888899999988876654 22 245566553
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=116.18 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=84.9
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p- 175 (283)
..+++ .+. .....+|||||||+|.+++.+++ .+..+++++|+.++++.+++ .++++++.+|+.+ +++
T Consensus 148 ~~il~-~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 148 RAILQ-NHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHH-TGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHH-hhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 44555 444 44568999999999999998877 57789999999557665543 3789999999998 666
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.||+|++..++|++.+++....+.++++.|+| ||.+++
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 49999998888888888888889999999999 677663
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3e-12 Score=100.86 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=83.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-CC---C--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-FI---P--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~---p--~~D~v~~~~vl 186 (283)
.....+|||||||. +.+|+ +.+++.+++ ..+++++.+|+.+ +. + .||+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56778999999996 23787 777777665 3469999999987 54 4 39999999999
Q ss_pred cCC-ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 187 HGL-GDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 187 h~~-~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
|++ ++. .++|++++++||| ||++++.+....... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVD-------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSC-------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEcccccccc-------------------cccccCCHHHHHHHHHHCCC
Confidence 998 665 4889999999999 799888654332110 01234588999999999999
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.8e-12 Score=105.20 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=95.7
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p 175 (283)
.++. .++ .....+|||+|||+|.++..+++. .|..+++++|+ +..++.+++ .+++++..+|+.+ +++
T Consensus 87 ~~~~-~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 87 AMVT-LLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHH-HcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 4455 444 667789999999999999999998 68899999999 777766653 2689999999988 465
Q ss_pred --CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHH
Q 023384 176 --PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTES 253 (283)
Q Consensus 176 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 253 (283)
.||+|++ ++++.. .+|+++.++|+| ||++++.+.... ...
T Consensus 164 ~~~~D~v~~-----~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~ 205 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEPW--KVLEKAALALKP---DRFLVAYLPNIT----------------------------QVL 205 (258)
T ss_dssp TTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHH
T ss_pred CCCcCEEEE-----CCcCHH--HHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHH
Confidence 3999998 344443 779999999999 788888763210 134
Q ss_pred HHHHHHHHCCCCeeeEEE
Q 023384 254 EWAKLFFDACFSHYKITP 271 (283)
Q Consensus 254 e~~~ll~~aGf~~~~~~~ 271 (283)
++.+.++++||..+++..
T Consensus 206 ~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 206 ELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHCCCceEEEEE
Confidence 666778888988766543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.6e-11 Score=103.96 Aligned_cols=121 Identities=17% Similarity=0.056 Sum_probs=93.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC-CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~v 185 (283)
..+..+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+++ ..+ .||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 455789999999999999999999877 8999999 888776654 4569999999998 333 4999998543
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
. ....+++++.++|+| ||.+++.+...... ......+++.+.++++||+
T Consensus 202 ~------~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~----------------------~~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKL----------------------MPREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGG----------------------TTTTTHHHHHHHHHHTTCE
T ss_pred h------hHHHHHHHHHHHCCC---CeEEEEEEeecccc----------------------ccccHHHHHHHHHHHcCCe
Confidence 2 124778999999999 78888777543111 0122467889999999998
Q ss_pred eee
Q 023384 266 HYK 268 (283)
Q Consensus 266 ~~~ 268 (283)
...
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-12 Score=105.37 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--CceEEEecccccCCCh
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d 191 (283)
....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ... .++.+|+.+ +++ .||+|++..+++++.+
T Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 53 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK-NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS-CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC-CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 46689999999999999999987 568999999 788777665 222 388999987 654 4999999887766643
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+ ...+|++++++|+| ||.+++....
T Consensus 130 ~-~~~~l~~~~~~Lkp---gG~l~~~~~~ 154 (260)
T 2avn_A 130 N-KDKAFSEIRRVLVP---DGLLIATVDN 154 (260)
T ss_dssp C-HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred c-HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 3 56889999999999 7888876643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-12 Score=109.75 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=83.9
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p- 175 (283)
..+.+ .+. .....+|||||||+|.++..++++ +..+++++|+.++++.+++ .++++++.+|+.+ +.+
T Consensus 40 ~~i~~-~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~ 115 (348)
T 2y1w_A 40 RAILQ-NHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 115 (348)
T ss_dssp HHHHH-TGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHh-ccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCC
Confidence 33444 443 446689999999999999988875 6679999999556555443 3789999999998 665
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.||+|++..+++++..+.....+.++++.|+| ||.+++
T Consensus 116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~ 153 (348)
T 2y1w_A 116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 153 (348)
T ss_dssp CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEES
T ss_pred ceeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEE
Confidence 49999999999999888778889999999999 677764
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=100.76 Aligned_cols=130 Identities=11% Similarity=0.071 Sum_probs=99.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC---CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP---PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p---~~D~v~~~~ 184 (283)
.++..+|+|||||+|.+++.+++..|..+++++|+ +..++.|++ .++|++..+|.++.++ .||+|++..
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 45668999999999999999999999999999999 888877764 4689999999999443 399998865
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACF 264 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 264 (283)
+ .-+-...||....+.|++ ++++++.- .. ..+.++++|.+.||
T Consensus 99 m----Gg~lI~~IL~~~~~~L~~---~~~lIlq~-~~-----------------------------~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLAG---VTKLILQP-NI-----------------------------AAWQLREWSEQNNW 141 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGTT---CCEEEEEE-SS-----------------------------CHHHHHHHHHHHTE
T ss_pred C----chHHHHHHHHHHHHHhCC---CCEEEEEc-CC-----------------------------ChHHHHHHHHHCCC
Confidence 4 335577899999999988 56655532 11 25678899999999
Q ss_pred CeeeEEEc--CC-cceEEEEe
Q 023384 265 SHYKITPI--FG-MRFLIEIY 282 (283)
Q Consensus 265 ~~~~~~~~--~~-~~~~i~~~ 282 (283)
.+.+..-. .+ +.-+|.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~ 162 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLA 162 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEE
Confidence 98764322 33 45666654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=96.88 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=88.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~vl 186 (283)
.....+|||+|||+|.++..+++ +..+++++|+ +.+++.+++ ..+++++.+|+.++++ .||+|++..+
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~- 109 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT- 109 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC-
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc-
Confidence 55668999999999999999998 7889999999 777776664 2689999999987544 5999999887
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
.....+++++++. | ||.+++...... +..++.++++++||.+
T Consensus 110 -----~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~~l~~~g~~~ 151 (183)
T 2yxd_A 110 -----KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIINEFESRGYNV 151 (183)
T ss_dssp -----SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHHHHHHTTCEE
T ss_pred -----ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHHHHHHcCCeE
Confidence 2345778888888 7 688888763110 2466788999999866
Q ss_pred eeE
Q 023384 267 YKI 269 (283)
Q Consensus 267 ~~~ 269 (283)
..+
T Consensus 152 ~~~ 154 (183)
T 2yxd_A 152 DAV 154 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=100.78 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=75.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC--CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP--PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p--~~D~v~~~~v 185 (283)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999999 777776653 3579999999987 3 44 4898887543
Q ss_pred ccCCChh------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 186 FHGLGDE------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 186 lh~~~d~------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
....... ....+|++++++|+| ||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 3211110 024789999999999 78887754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=104.89 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=93.9
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC-
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP- 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p- 175 (283)
.++. .++ .....+|||+|||+|.++..+++. .|..+++++|+ +..++.+++ .++++++.+|+.+.++
T Consensus 103 ~i~~-~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 103 FIAM-MLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHH-HhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 4445 444 667789999999999999999999 68899999999 877776654 2589999999988544
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHH
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 254 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 254 (283)
.||+|++ +.++. ..+|+++.++|+| ||.+++.+.... ..++
T Consensus 180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~----------------------------~~~~ 221 (277)
T 1o54_A 180 KDVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQE 221 (277)
T ss_dssp CSEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred CccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHH
Confidence 4999998 33443 3779999999999 788887663210 1345
Q ss_pred HHHHHHHCCCCeeeEE
Q 023384 255 WAKLFFDACFSHYKIT 270 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~~ 270 (283)
+.+.++++||+.+++.
T Consensus 222 ~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 222 TLKKLQELPFIRIEVW 237 (277)
T ss_dssp HHHHHHHSSEEEEEEE
T ss_pred HHHHHHHCCCceeEEE
Confidence 6667778888776654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-12 Score=107.18 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=77.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-CC---CceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-IP---PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~p---~~D~v 180 (283)
..+..+|||||||+|..+..+++.+| +.+++++|+ ++.++.+++ .++++++.+|+.+ + .+ .||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44568999999999999999999998 899999999 877776654 4689999999866 2 21 59999
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
++.. +......+++++.+.|+| ||.+++-+...
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVR 173 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCc
Confidence 9854 344456789999999999 67766655433
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=109.53 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=81.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-------CC-----C---CCeEEEEcCCCC-C--C--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL-------PE-----A---DNLKYIAGDMFQ-F--I-- 174 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~-----~---~rv~~~~~d~~~-~--~-- 174 (283)
.....+|||||||+|.++..+++.++..+++++|+ +..++.| ++ . .+++++.+|.+. + +
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~ 319 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 319 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc
Confidence 56678999999999999999999988889999999 7666655 32 2 689999875543 2 2
Q ss_pred --CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 175 --PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 175 --p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
..||+|++..+++ . ++....|+++.+.|+| ||++++.+.+.+..
T Consensus 320 ~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 320 LIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp HGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 3599999987774 2 3455779999999999 89999998777654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-12 Score=103.16 Aligned_cols=100 Identities=20% Similarity=0.273 Sum_probs=79.5
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC-
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP- 175 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p- 175 (283)
...+++ .++ .....+|||||||+|.++..+++..+ .+++++|+ +..++.+++ ..++++..+|+..+++
T Consensus 80 ~~~~~~-~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (235)
T 1jg1_A 80 VAIMLE-IAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP 155 (235)
T ss_dssp HHHHHH-HHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHH-hcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC
Confidence 344555 454 56778999999999999999999988 89999998 777776654 2469999999855544
Q ss_pred --CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 --PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.||+|++..+++++.+ ++.+.|+| ||++++..
T Consensus 156 ~~~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~ 189 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPV 189 (235)
T ss_dssp GCCEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEE
T ss_pred CCCccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEE
Confidence 3999999999998765 57789999 68777754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=101.36 Aligned_cols=99 Identities=11% Similarity=0.216 Sum_probs=75.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC--------CC-
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF--------IP- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~--------~p- 175 (283)
.....+|||+|||+|.++..+++++|..+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 34567999999999999999999999999999999 777765543 23699999999874 22
Q ss_pred -CceEEEecccccC----------------CChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 176 -PADAFLFKLVFHG----------------LGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 176 -~~D~v~~~~vlh~----------------~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.||+|++.-.++. ........+++.+.+.|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 4999999733322 2222356889999999999 7888774
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7e-12 Score=102.42 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--C--CC--CceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--F--IP--PADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~--~p--~~D~v~~~~ 184 (283)
...+|||||||+|.++..+++.+|+.+++++|+ +++++.+++ ..+++++.+|..+ + ++ .+|.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457999999999999999999999999999999 777766543 3579999999766 2 44 499998874
Q ss_pred cccCCChhHH------HHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDEDG------LKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~~------~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.......... ..+++.++++||| ||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 4332222111 2489999999999 78877654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=99.22 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=77.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C------CCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I------PPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~ 177 (283)
.....+|||||||+|..+..+++.+| +.+++++|+ +..++.+++ .++++++.+|..+. . ..|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 34557999999999999999999998 889999999 777776654 36799999998662 1 459
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
|+|++.. +......+++++.+.|+| ||.+++.+...
T Consensus 142 D~v~~~~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 177 (225)
T 3tr6_A 142 DLIYIDA-----DKANTDLYYEESLKLLRE---GGLIAVDNVLR 177 (225)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred cEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEeCCCc
Confidence 9999644 234456889999999999 67777665544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=101.67 Aligned_cols=96 Identities=13% Similarity=0.253 Sum_probs=76.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC-----CCceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI-----PPADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~-----p~~D~v~~ 182 (283)
..+..+|||||||+|..+..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 44568999999999999999999889999999999 888777664 358999999998732 24999997
Q ss_pred cccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 183 KLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
... ......+++++.+.|+| ||.+++-+.
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~ 177 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNV 177 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECT
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeC
Confidence 542 33356789999999999 676655443
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=106.24 Aligned_cols=95 Identities=18% Similarity=0.186 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
....+|||||||+|.++..++++ +..+++++|+.++++.+++ .++++++.+|+.+ ++| .||+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45589999999999999999987 6679999999656666553 4679999999998 666 49999987654
Q ss_pred cCC-ChhHHHHHHHHHHHhhccCCCCcEEE
Q 023384 187 HGL-GDEDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 187 h~~-~d~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
|.+ ..+....+++.+.+.|+| ||.++
T Consensus 144 ~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred ccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 443 223456789999999999 67765
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=100.88 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=76.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C------CCce
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I------PPAD 178 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~------p~~D 178 (283)
.+..+|||||||+|..+..+++.+| +.+++++|+ ++.++.+++ .++++++.+|..+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4558999999999999999999986 889999999 777766654 4689999999876 2 2 3599
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+|++... ......+++++.+.|+| ||.+++-+...
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 173 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFW 173 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCcc
Confidence 9988643 34456789999999999 66666655444
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=97.79 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=77.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC---CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP---PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p---~~D~v~~~~ 184 (283)
.....+|||||||+|.++..+++.. |+.+++++|+ +..++.+++ ..++++..+|+..+.+ .||+|++..
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 154 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTA 154 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECC
Confidence 5667899999999999999999987 7789999999 777777654 2579999999876443 499999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
++|++.+ ++.+.|+| ||++++...
T Consensus 155 ~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 155 AGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp BBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred chHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 9998873 67889999 788877653
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.9e-12 Score=103.57 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=99.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEecccccC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHG 188 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~ 188 (283)
....+|||||||.|-++..++...|..+++++|+ +.+++.+++ ..+.++...|+.. +.+ .||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 5578999999999999999999999999999999 777776664 5568899999998 444 4999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 268 (283)
+.++.....+ ++.++|+| +|.++-.+. ..=.+..+ +-.+.-.++|++.+.+.|+.+.+
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~-ksl~Grs~-----------------gm~~~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFPT-KSLGQRSK-----------------GMFQNYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEEC-C------------------------CHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEeccc-hhhcCCCc-----------------chhhHHHHHHHHHHHhcCCceee
Confidence 9988766777 89999999 444444443 11111110 00011257899999999985443
Q ss_pred EEEcCC
Q 023384 269 ITPIFG 274 (283)
Q Consensus 269 ~~~~~~ 274 (283)
...++
T Consensus 269 -~~~~n 273 (281)
T 3lcv_B 269 -LEIGN 273 (281)
T ss_dssp -EEETT
T ss_pred -eeecC
Confidence 44443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-11 Score=104.82 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~ 188 (283)
...+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ ..+ .||+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5579999999999999999987 569999999 777877664 3358999999998 444 5999999999987
Q ss_pred ---CChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 189 ---LGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 189 ---~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...+...++++++++.|+| ||.++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3456677999999999999 78888764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-11 Score=96.75 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=79.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC---
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI--- 174 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~--- 174 (283)
..+++ .++ .....+|||||||+|.++..+++. ..+++++|+ +..++.+++ ..+++++.+|..+..
T Consensus 67 ~~~~~-~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 67 ARMTE-LLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHH-hcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 33444 444 567789999999999999999998 679999999 777776654 357999999998832
Q ss_pred CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 175 PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..||+|++..++|++++ ++.+.|+| ||++++.-.
T Consensus 142 ~~~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 175 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVG 175 (210)
T ss_dssp CCEEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEEC
T ss_pred CCccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEc
Confidence 24999999999998886 47889999 788777554
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-11 Score=97.89 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=77.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C-----CCce
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I-----PPAD 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~-----p~~D 178 (283)
.....+|||||||+|..+..+++.+| +.+++++|+ +..++.+++ .++++++.+|..+. + ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 44568999999999999999999998 789999999 877776653 45799999998762 1 3499
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+|++... ......+++++.+.|+| ||.+++-+...
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 170 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVR 170 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCc
Confidence 9988554 33456889999999999 67666655443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.3e-11 Score=102.46 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=74.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
.....+|||||||+|.++..++++ +..+++++|+.++++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 456689999999999999998887 4568999999557666654 3789999999998 666 4999998763
Q ss_pred ccCC-ChhHHHHHHHHHHHhhccCCCCcEEE
Q 023384 186 FHGL-GDEDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 186 lh~~-~d~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
.+.+ .......+|+++.+.|+| ||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 2222 223455789999999999 67766
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=102.05 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcC-CCCCCeEEEE-cCCCC----CCC--CceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANL-PEADNLKYIA-GDMFQ----FIP--PADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~rv~~~~-~d~~~----~~p--~~D~v~~~~vlh~ 188 (283)
...+|||||||||.++..+++. +..+++++|+ +++++.+ ++..++.... .|+.. .+| .||++++..++|+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred cccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 4579999999999999988886 5568999999 7777653 3345654433 23322 133 3999999888885
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-cCCccCCHHHHHHHHHHCCCCee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDACFSHY 267 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll~~aGf~~~ 267 (283)
+ ..+|++++++|+| ||+++++- .|.....+ ...+..-... ..-..+..+++.++++++||++.
T Consensus 164 l-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~~------~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 164 L-----NLILPALAKILVD---GGQVVALV--KPQFEAGR------EQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK 227 (291)
T ss_dssp G-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSCG------GGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred H-----HHHHHHHHHHcCc---CCEEEEEE--CcccccCh------hhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 5 4779999999999 79988862 22111110 0000000000 00112367899999999999998
Q ss_pred eEEEcC
Q 023384 268 KITPIF 273 (283)
Q Consensus 268 ~~~~~~ 273 (283)
.+...+
T Consensus 228 ~~~~sp 233 (291)
T 3hp7_A 228 GLDFSP 233 (291)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 876653
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.2e-11 Score=94.00 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--C--CCceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--I--PPADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~--p~~D~v~~~~ 184 (283)
....+|||+|||+|.++..+++. +..+++++|+ +++++.+++ .++++++.+|+.+ . . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 5668999999 888877765 3589999999987 2 3 2599999988
Q ss_pred cccCCChhHHHHHHHHHHH--hhccCCCCcEEEEEeee
Q 023384 185 VFHGLGDEDGLKILKKRRA--AIASNGERGKVIIIDIV 220 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~d~~ 220 (283)
.+|+. .++..++++.+.+ .|+| ||.+++....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~ 155 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTRE---GTVAVVERAT 155 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCT---TCEEEEEEET
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCC---CeEEEEEecC
Confidence 87643 4556789999999 9999 6887775543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.7e-11 Score=92.15 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=78.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-C--------CC--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-F--------IP--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~--------~p--~~D~v~~~ 183 (283)
.....+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..+++++.+|+.+ + ++ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 3556799999999999999999995 779999999955322 2689999999988 5 55 49999999
Q ss_pred ccccCCChhH---------HHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 184 LVFHGLGDED---------GLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 184 ~vlh~~~d~~---------~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.++|...+.. ...+++++.+.|+| ||.+++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF 137 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEe
Confidence 9888765431 15889999999999 788877654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.4e-11 Score=97.87 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCC--C---C--CceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEA----FPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQF--I---P--PADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~--~---p--~~D~v~~~~ 184 (283)
...+|||||||+|..+..+++. .|+.+++++|+ +++++.++. ..+++++.+|..+. + + .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3479999999999999999998 78999999999 777777754 57899999999873 2 2 499998866
Q ss_pred cccCCChhHHHHHHHHHHH-hhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRRA-AIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~-~L~p~~~gg~lli~d~ 219 (283)
. |. +...+|+++.+ .|+| ||.+++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 4 52 34578999997 9999 788887664
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=101.08 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC---CC-------C----------------------
Q 023384 118 GLGSLVDVGGGNGSLSRIISEA--FPGIKCTVLDL-PHVVANLPE---AD-------N---------------------- 162 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~-------r---------------------- 162 (283)
...+|||+|||+|.++..+++. +|..+++++|+ +.+++.+++ .. +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4579999999999999999998 78889999999 888877663 22 2
Q ss_pred ---eE-------------EEEcCCCCCC-------C-CceEEEecccccCCCh-------hHHHHHHHHHHHhhccCCCC
Q 023384 163 ---LK-------------YIAGDMFQFI-------P-PADAFLFKLVFHGLGD-------EDGLKILKKRRAAIASNGER 211 (283)
Q Consensus 163 ---v~-------------~~~~d~~~~~-------p-~~D~v~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~g 211 (283)
++ ++.+|++++. . .||+|++...++...+ +....++++++++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 67 9999999843 3 5999999876655432 5667899999999999 7
Q ss_pred cEEEEEee
Q 023384 212 GKVIIIDI 219 (283)
Q Consensus 212 g~lli~d~ 219 (283)
|.+++++.
T Consensus 208 G~l~~~~~ 215 (250)
T 1o9g_A 208 AVIAVTDR 215 (250)
T ss_dssp CEEEEEES
T ss_pred cEEEEeCc
Confidence 98888543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.1e-11 Score=100.69 Aligned_cols=94 Identities=18% Similarity=0.243 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC-Cc---eEEEec--
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP-PA---DAFLFK-- 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-~~---D~v~~~-- 183 (283)
...+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++ .++++|+.+|++++.+ .| |+|++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999999 888877664 3479999999998554 48 999996
Q ss_pred ----------ccccCCCh------hHHHHHHHHHH-HhhccCCCCcEEEE
Q 023384 184 ----------LVFHGLGD------EDGLKILKKRR-AAIASNGERGKVII 216 (283)
Q Consensus 184 ----------~vlh~~~d------~~~~~iL~~~~-~~L~p~~~gg~lli 216 (283)
.+. +.+. ++...+++++. +.++| ||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 233 2222 11237899999 99999 677665
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=93.58 Aligned_cols=94 Identities=21% Similarity=0.227 Sum_probs=73.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC--CCeEEEeechHHHhcCCCCCCeEEEEcCCCC-C-------------------
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP--GIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-F------------------- 173 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~------------------- 173 (283)
+....+|||||||+|.++..+++.+| +.+++++|+.+. ....+++++.+|+.+ +
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~ 95 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVD 95 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----------CHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccccccccchhhH
Confidence 35567999999999999999999998 689999999542 124579999999987 4
Q ss_pred ------CC--CceEEEecccccCCC----hhH-----HHHHHHHHHHhhccCCCCcEEEE
Q 023384 174 ------IP--PADAFLFKLVFHGLG----DED-----GLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 174 ------~p--~~D~v~~~~vlh~~~----d~~-----~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++ .||+|++...+|... +.. ...+|++++++|+| ||.+++
T Consensus 96 ~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~ 152 (201)
T 2plw_A 96 YKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIV 152 (201)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred HHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEE
Confidence 34 499999988777532 211 13479999999999 787766
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.6e-11 Score=98.51 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--CceEEEecccccCCCh
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d 191 (283)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.+..+|+.+ +++ .||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4568999999999999999999999899999999 778877765 5678999999987 554 49999986653
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
..+++++++|+| ||++++..+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 248899999999 79998887654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.5e-11 Score=97.75 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEEcCCCC--C--CC--Cc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------------EADNLKYIAGDMFQ--F--IP--PA 177 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~rv~~~~~d~~~--~--~p--~~ 177 (283)
....+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...++.++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3457899999999999999999999999999999 77765432 14689999999986 3 43 48
Q ss_pred eEEEecccccCCChh--H----HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 178 DAFLFKLVFHGLGDE--D----GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 178 D~v~~~~vlh~~~d~--~----~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|.|++...-...... . ...+|++++++|+| ||.+++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 998874432211100 0 13689999999999 78887754
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=100.65 Aligned_cols=99 Identities=10% Similarity=0.146 Sum_probs=76.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC---CC------CCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ---FI------PPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~---~~------p~~ 177 (283)
..+..+|||||||+|..+..+++.++ +.+++++|+ +.+++.+++ .++++++.+|+.+ .. ..|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34568999999999999999999875 889999999 888877664 3579999999744 22 259
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
|+|++....|++.+ ..++++.+ +.|+| ||.+++.+..
T Consensus 136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCC
T ss_pred EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCC
Confidence 99999887776543 34667777 99999 6776664443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-11 Score=102.80 Aligned_cols=96 Identities=16% Similarity=0.272 Sum_probs=76.4
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC---CCC--CceEEEeccccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ---FIP--PADAFLFKLVFH 187 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p--~~D~v~~~~vlh 187 (283)
.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..|++++.+|..+ ..+ .||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4999999999999999999999999999999 888877764 4689999999876 233 499999865554
Q ss_pred CCChhH--HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 188 GLGDED--GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 188 ~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...... ...++++++++|+| ||.+++..
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~ 200 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANC 200 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEEe
Confidence 332222 25789999999999 67665544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.4e-11 Score=97.93 Aligned_cols=96 Identities=10% Similarity=0.239 Sum_probs=78.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C---CCceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I---PPADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~---p~~D~v~ 181 (283)
..+..+|||||||+|..+..+++.+|+.+++++|+ +..++.+++ ..+++++.+|+.+. . ..||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999999 777776654 35799999999872 2 2499999
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+....+ ....+|+++.+.|+| ||.+++.+.
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~ 161 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNV 161 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETT
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcC
Confidence 977654 345889999999999 677777543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-11 Score=106.33 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=77.6
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------------CCCeEE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-----------------ADNLKY 165 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~rv~~ 165 (283)
..++. .++ .....+|||+|||+|.++..+++. .|+.+++++|+ +..++.+++ ..++++
T Consensus 95 ~~~l~-~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 95 NMILS-MMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp HHHHH-HHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHH-hcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 33455 444 667789999999999999999998 58899999999 777766543 268999
Q ss_pred EEcCCCCC---CC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 166 IAGDMFQF---IP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 166 ~~~d~~~~---~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+.+|+.+. ++ .||+|++.. ++.. .+++++.++|+| ||.+++...
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~Lkp---gG~lv~~~~ 220 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKH---GGVCAVYVV 220 (336)
T ss_dssp EESCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEE---EEEEEEEES
T ss_pred EECChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCC---CcEEEEEeC
Confidence 99999872 33 399999843 2222 368999999999 788887664
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-10 Score=95.82 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=78.7
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCCCCC---C
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQFIP---P 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p---~ 176 (283)
..+++ .+. .....+|||||||+|.++..+++.. .+++++|+ +..++.+++ ..+++++.+|+.+..+ .
T Consensus 60 ~~~~~-~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (231)
T 1vbf_A 60 IFMLD-ELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (231)
T ss_dssp HHHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred HHHHH-hcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence 34444 444 5667899999999999999999986 78999999 777776654 2289999999987332 4
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
||+|++..++|++.+ ++.+.|+| ||++++...
T Consensus 135 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~ 166 (231)
T 1vbf_A 135 YDRVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG 166 (231)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred ccEEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence 999999999998874 47789999 788887754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=97.27 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec--hHHHhcCCC------------C----CCeEEEEcCCCCC---C-
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL--PHVVANLPE------------A----DNLKYIAGDMFQF---I- 174 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~------------~----~rv~~~~~d~~~~---~- 174 (283)
....+|||||||+|.++..+++. ...+++++|+ +.+++.+++ . +++++...|..+. +
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 45579999999999999988875 3458999999 455544322 1 4788886665442 2
Q ss_pred -----CCceEEEecccccCCChhHHHHHHHHHHHhhc---cCCCCcEEEEE
Q 023384 175 -----PPADAFLFKLVFHGLGDEDGLKILKKRRAAIA---SNGERGKVIII 217 (283)
Q Consensus 175 -----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~---p~~~gg~lli~ 217 (283)
..||+|++..++|+.++ ...+++.+.++|+ | .+||+++++
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 25999999999997655 4588999999999 7 335776663
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.6e-11 Score=96.79 Aligned_cols=91 Identities=8% Similarity=0.128 Sum_probs=71.8
Q ss_pred CeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------C-CCeEEEEcCCCC---CC-C-CceEEEecc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------A-DNLKYIAGDMFQ---FI-P-PADAFLFKL 184 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~-~rv~~~~~d~~~---~~-p-~~D~v~~~~ 184 (283)
.+|||||||+|..+..+++.+| +.+++++|+ ++.++.+++ . ++++++.+|..+ .+ + .||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3999999999999999999985 889999999 877776654 3 589999999876 23 2 499998864
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.. .....+++++.+.|+| ||.+++-+
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn 163 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLAD 163 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEETT
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEeC
Confidence 32 2345789999999999 56555533
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-11 Score=100.24 Aligned_cols=137 Identities=15% Similarity=0.041 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEE--------EE-cCCCCCCCCceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKY--------IA-GDMFQFIPPADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~--------~~-~d~~~~~p~~D~v~~~~vl 186 (283)
...+|||||||+|.++..+++. ...+++++|+ +++++.+.+ ..++.. .. .|+..+ .+|.+.+..++
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~D~v~ 113 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG--RPSFTSIDVSF 113 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC--CCSEEEECCSS
T ss_pred CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC--CCCEEEEEEEh
Confidence 4569999999999999999987 3349999999 777665432 333332 22 222211 13554444444
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc-cCCccCCHHHHHHHHHHCCCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN-ATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll~~aGf~ 265 (283)
..+ ..+|++++++|+| ||.++++. .+...... ....-.-... ......+.+++.++++++||+
T Consensus 114 ~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~~e~~~------~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~ 177 (232)
T 3opn_A 114 ISL-----DLILPPLYEILEK---NGEVAALI--KPQFEAGR------EQVGKNGIIRDPKVHQMTIEKVLKTATQLGFS 177 (232)
T ss_dssp SCG-----GGTHHHHHHHSCT---TCEEEEEE--CHHHHSCH------HHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEE
T ss_pred hhH-----HHHHHHHHHhccC---CCEEEEEE--CcccccCH------HHhCcCCeecCcchhHHHHHHHHHHHHHCCCE
Confidence 433 4789999999999 78888842 11100000 0000000000 001123778999999999999
Q ss_pred eeeEEEcC
Q 023384 266 HYKITPIF 273 (283)
Q Consensus 266 ~~~~~~~~ 273 (283)
+..+...+
T Consensus 178 v~~~~~~p 185 (232)
T 3opn_A 178 VKGLTFSP 185 (232)
T ss_dssp EEEEEECS
T ss_pred EEEEEEcc
Confidence 98876543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-11 Score=104.70 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=78.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC-CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~vl 186 (283)
.....+|||||||+|.++..++++. ..+++++|+.++++.+++ .++++++.+|+.+ +++ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4556899999999999999999873 348999999766655543 4679999999988 665 59999997766
Q ss_pred cCCCh-hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 187 HGLGD-EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 187 h~~~d-~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
|.... .....+++.+.+.|+| ||.+++.+.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~ 170 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHA 170 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecC
Confidence 66543 3356789999999999 677765443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-11 Score=96.68 Aligned_cols=98 Identities=8% Similarity=0.080 Sum_probs=77.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C------CCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I------PPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~ 177 (283)
.....+|||||||+|..+..+++.+| ..+++++|+ +..++.+++ .++++++.+|+.+. + ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 45668999999999999999999987 789999999 777776654 36899999998652 2 459
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
|+|++... ......+++++.+.|+| ||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence 99998543 33456889999999999 67776655443
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-10 Score=100.63 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
....+|||||||+|.++..++++ +..+++++|+.++++.+++ .++++++.+|+.+ ++| .||+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 34579999999999999988876 5568999999656665543 4689999999998 666 49999988655
Q ss_pred cCCC-hhHHHHHHHHHHHhhccCCCCcEEE
Q 023384 187 HGLG-DEDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 187 h~~~-d~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
+.+. ......+|+.+.+.|+| ||.++
T Consensus 116 ~~l~~~~~~~~~l~~~~~~Lkp---gG~li 142 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred hhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence 4432 23345789999999999 67765
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-10 Score=99.04 Aligned_cols=103 Identities=11% Similarity=0.120 Sum_probs=78.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C-CC-CceEEEec-
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F-IP-PADAFLFK- 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~-~p-~~D~v~~~- 183 (283)
.....+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56678999999999999999999975 489999999 777766654 3479999999987 3 23 59999983
Q ss_pred -----ccccC-------CChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 -----LVFHG-------LGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 -----~vlh~-------~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.+++. |+.++ ..++|+++.+.||| ||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCCC
Confidence 23433 22222 15889999999999 78887766433
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=99.93 Aligned_cols=101 Identities=13% Similarity=0.245 Sum_probs=80.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC--
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI-- 174 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~-- 174 (283)
..+++ .+. .....+|||||||+|.++..+++..+ +.+++++|+ +++++.+++ ..+++++.+|+.+..
T Consensus 65 ~~l~~-~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 65 ALFME-WVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHH-hcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 33444 444 56678999999999999999999987 488999999 888776654 256999999998732
Q ss_pred -CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 175 -PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 175 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..||+|++..++|++. +++.+.|+| ||++++...
T Consensus 142 ~~~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp GCCEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CCCeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 2499999999999887 457789999 788887643
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-11 Score=92.37 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC-------CceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP-------PADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p-------~~D~v~~~~ 184 (283)
...+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5689999999999999999998765 999999 888877764 2289999999876211 599999998
Q ss_pred cccCCChhHHHHHHHHHH--HhhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRR--AAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~--~~L~p~~~gg~lli~d~ 219 (283)
.+| -..+ .+++.+. +.|+| ||.+++...
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~ 148 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHP 148 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEE
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeC
Confidence 877 2223 3445555 99999 677666543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=93.49 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=78.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEecccccC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHG 188 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~ 188 (283)
....+|||||||+|-++..+. |..+++++|+ +.+++.+++ ..+..+...|... +.| .||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 457899999999999999877 8999999999 888877765 5678899999998 555 4999999999999
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+.+++....+ ++.++|++ ++++|.=+
T Consensus 181 LE~q~~~~~~-~ll~aL~~----~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT----PRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC----SEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC----CCEEEEcC
Confidence 9887766666 88999998 45555443
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=4.6e-11 Score=104.58 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCC------ccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--------CceE
Q 023384 117 EGLGSLVDVGGG------NGSLSRIISEA-FPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--------PADA 179 (283)
Q Consensus 117 ~~~~~vlDvGgG------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--------~~D~ 179 (283)
....+||||||| +|..+..++++ +|+.+++++|+ +.+. ....+++|+.+|+.+ ++. .||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccE
Confidence 345899999999 77777777765 69999999999 5553 235799999999988 443 4999
Q ss_pred EEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
|++. ..|++.+ ..+.|++++++||| ||.+++.|..
T Consensus 292 Visd-gsH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDD-GSHINAH--VRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEEC-SCCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEEC-Ccccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence 9876 4576544 46889999999999 7877777754
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-10 Score=95.78 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC--C-CC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ--F-IP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~-~p-~~D~v~ 181 (283)
....+|||||||+|..+.++++..|..+++++|+ +.+++.+++ .+|++++.+|..+ + .+ .||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3458999999999999999998877889999999 888766543 4689999999876 2 22 499999
Q ss_pred ecccccCCChhH--HHHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDED--GLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+....+..+.+. ...++++++++|+| ||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 965543322211 24789999999999 5666553
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.12 E-value=6.9e-11 Score=98.23 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=72.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEEcCCCC--C--CC-
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------------ADNLKYIAGDMFQ--F--IP- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~rv~~~~~d~~~--~--~p- 175 (283)
.+...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+++ + ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34567999999999999999999999999999999 777654421 2579999999986 2 33
Q ss_pred -CceEEEecccccCCChhHH-----------HHHHHHHHHhhccCCCCcEEEEE
Q 023384 176 -PADAFLFKLVFHGLGDEDG-----------LKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~-----------~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.+|.|++. ++++.. ..+++++.++|+| ||.+++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 37777643 233211 3789999999999 7887774
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-11 Score=95.95 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=75.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--CC-CCceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--FI-PPADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~~-p~~D~v~~~~ 184 (283)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3457999999999999999999988 889999999 888777664 3579999999875 32 2299998863
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
. ......+++++++.|+| ||.+++.+..
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~ 162 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNAL 162 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECcc
Confidence 2 23346889999999999 6776664443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=96.61 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=77.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C---------
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I--------- 174 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~--------- 174 (283)
..+..+|||||||+|..+..+++.+| ..+++++|+ +..++.+++ ..+++++.+|..+ + +
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34568999999999999999999988 789999999 777776654 2469999999865 2 1
Q ss_pred --------CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 175 --------PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 175 --------p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
..||+|++... .+....+++++.+.|+| ||.+++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEcccc
Confidence 45999998643 34456889999999999 67777655443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.4e-10 Score=97.40 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=78.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
+.+..+|||+|||+|.++++++... |+.+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++.-
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~np 280 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILANP 280 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEECC
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEECC
Confidence 5667899999999999999999988 8999999999 888877764 2389999999998 433 489999965
Q ss_pred cccCCCh--hH----HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGD--ED----GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d--~~----~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..+.... .+ ...+++.+++.|+| ||+++++.
T Consensus 281 Pyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t 317 (354)
T 3tma_A 281 PHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT 317 (354)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred CCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 4432111 11 26789999999999 78888864
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-10 Score=95.70 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=79.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC-CC-CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF-IP-PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~-~p-~~D~v~~~~vl 186 (283)
+....+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ ..++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 55678999999999999999999998889999999 888877664 35789999999873 32 49999986543
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
....+++++.+.|+| ||.+++.+....
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~ 223 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAE 223 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCcc
Confidence 234678999999999 788887765543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=90.84 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC-------CCCceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF-------IPPADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~-------~p~~D~v~ 181 (283)
....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3567999999999999999887 46679999999 888877764 25799999999872 23599999
Q ss_pred ecccccCCChhHHHHHHHHH--HHhhccCCCCcEEEEEee
Q 023384 182 FKLVFHGLGDEDGLKILKKR--RAAIASNGERGKVIIIDI 219 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~--~~~L~p~~~gg~lli~d~ 219 (283)
+...+|....+ .+++.+ .+.|+| ||.+++...
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~ 155 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETD 155 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeC
Confidence 98876633333 445555 788999 677666543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=95.77 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=76.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C-------CC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I-------PP 176 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~-------p~ 176 (283)
..+..+|||||||+|..+..+++.+| +.+++++|+ +..++.+++ .++++++.+|..+ + . ..
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 34568999999999999999999988 789999999 777776654 3589999999875 2 2 35
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
||+|++... ......+++++.+.|+| ||.+++-+..
T Consensus 157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~ 192 (247)
T 1sui_A 157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTL 192 (247)
T ss_dssp BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTT
T ss_pred EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCC
Confidence 999998643 23356889999999999 6776654433
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=92.75 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC----------------CCCCeEEEEcCCCCC---CCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP----------------EADNLKYIAGDMFQF---IPP 176 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~rv~~~~~d~~~~---~p~ 176 (283)
....+|||||||+|..+..+++. |..+++++|+ +.+++.++ ..+|++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 45589999999999999999998 8889999999 77776543 236899999998652 235
Q ss_pred ceEEEecccccCCChhH--HHHHHHHHHHhhccCCCCcEEEEE
Q 023384 177 ADAFLFKLVFHGLGDED--GLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
||+|++....+..+.+. ...++++++++|+| ||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 99999866543222222 25789999999999 6666554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-11 Score=93.74 Aligned_cols=96 Identities=9% Similarity=0.078 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C-CCceEEEecc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I-PPADAFLFKL 184 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~-p~~D~v~~~~ 184 (283)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35679999999999999999887 6679999999 778777654 25799999998772 2 2499999987
Q ss_pred cccCCChhHHHHHHHHHH--HhhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRR--AAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~--~~L~p~~~gg~lli~d~ 219 (283)
.+|. .....+++.+. +.|+| ||.+++...
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~ 139 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETD 139 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEEC
Confidence 6642 23345666666 89999 677666543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-10 Score=93.16 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=75.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C-------CC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I-------PP 176 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~-------p~ 176 (283)
..+..+|||||||+|..+..+++..| +.+++++|+ ++.++.+++ .++++++.+|..+ + . ..
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 44568999999999999999999988 789999999 777776653 3579999999876 2 2 35
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
||+|++.. .......+++++.+.|+| ||.+++-+
T Consensus 148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDN 181 (237)
T ss_dssp EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEEC
T ss_pred cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEec
Confidence 99999753 334467889999999999 56554433
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=93.63 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C--CCeEEEEcCCCC-C-C---CC-ceEEEe
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------A--DNLKYIAGDMFQ-F-I---PP-ADAFLF 182 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~rv~~~~~d~~~-~-~---p~-~D~v~~ 182 (283)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ . ++++++.+|+.+ . . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 347999999999999998777643 58999999 888877764 2 689999999876 2 1 36 999999
Q ss_pred cccccCCChhHHHHHHHHH--HHhhccCCCCcEEEEEee
Q 023384 183 KLVFHGLGDEDGLKILKKR--RAAIASNGERGKVIIIDI 219 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~--~~~L~p~~~gg~lli~d~ 219 (283)
...+| .. ....+++.+ .+.|+| ||.+++...
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~ 164 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETE 164 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEEC
Confidence 88865 33 345778888 557999 677766554
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-09 Score=89.53 Aligned_cols=93 Identities=24% Similarity=0.207 Sum_probs=75.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCCC----
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-----PGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQFI---- 174 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~---- 174 (283)
.....+|||||||+|.++..+++.. |..+++++|+ +..++.+++ ..+++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4566899999999999999999986 6789999999 777776654 258999999998743
Q ss_pred ---CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 175 ---PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 175 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..||+|++...+|++ ++++.+.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence 249999999998864 4678899999 788777653
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-10 Score=89.91 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=72.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC---------CeEEEeechHHHhcCCCCCCeEEE-EcCCCC-C--------CC-
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG---------IKCTVLDLPHVVANLPEADNLKYI-AGDMFQ-F--------IP- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~rv~~~-~~d~~~-~--------~p- 175 (283)
+....+|||||||+|.++..+++.++. .+++++|+.+.. ...+++++ .+|+.+ + ++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 456689999999999999999999875 899999995421 13578899 999876 3 22
Q ss_pred -CceEEEecccccC----CChhH-----HHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 176 -PADAFLFKLVFHG----LGDED-----GLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 176 -~~D~v~~~~vlh~----~~d~~-----~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.||+|++...+|. ..+.. ...+++++.++|+| ||++++...
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 4999998654442 12221 14789999999999 788877653
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=8.6e-10 Score=95.17 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC---CC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF---IP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~v~ 181 (283)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+. .+ .||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 4558999999999999999998878899999999 888766543 36899999998762 23 499999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDEDG--LKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+...-+.-+.+.. ..++++++++|+| ||.+++.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8643221112221 5889999999999 5666553
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-10 Score=94.69 Aligned_cols=101 Identities=15% Similarity=0.234 Sum_probs=79.3
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCC-C
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQ-F 173 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~-~ 173 (283)
.++. .++ .....+|||+|||+|.++..+++. .|..+++++|+ +..++.+++ .++++++.+|+.+ +
T Consensus 90 ~i~~-~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 90 QIVH-EGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHH-HcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 4444 444 667789999999999999999996 57899999999 777766543 2589999999987 5
Q ss_pred CC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 174 IP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 174 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
++ .||+|++ +.++.. .+|+++.++|+| ||.+++...
T Consensus 167 ~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~p---gG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEES
T ss_pred CCCCceeEEEE-----CCcCHH--HHHHHHHHhCCC---CCEEEEEeC
Confidence 53 4999998 233333 679999999999 788888764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.7e-10 Score=93.61 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=70.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--EcCCCC-CCCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE--AD------NLKYI--AGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------rv~~~--~~d~~~-~~p~~D~v~~~~ 184 (283)
+....+|||||||+|.++..+++. .+++++|+.+++..+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 456689999999999999998887 68999999445433322 11 68899 999987 533599999976
Q ss_pred cccCCChh----H-HHHHHHHHHHhhccCCCCc--EEEEEe
Q 023384 185 VFHGLGDE----D-GLKILKKRRAAIASNGERG--KVIIID 218 (283)
Q Consensus 185 vlh~~~d~----~-~~~iL~~~~~~L~p~~~gg--~lli~d 218 (283)
. +...+. . ...+|+.+.++|+| || .+++-.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv 185 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKV 185 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEe
Confidence 6 433221 1 23489999999999 78 766644
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=86.38 Aligned_cols=94 Identities=15% Similarity=0.316 Sum_probs=69.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCC--------------CCceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFI--------------PPADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~--------------p~~D~v~ 181 (283)
+....+|||+|||+|.++..+++. ..+++++|+.+. ....+++++.+|+.+.. ..||+|+
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vl 96 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEe
Confidence 456789999999999999999988 789999999432 12468999999998831 3699999
Q ss_pred ecccccC---CC-h-----hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 182 FKLVFHG---LG-D-----EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 182 ~~~vlh~---~~-d-----~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+...... +. | +.+..+|+.+.+.|+| ||.+++..
T Consensus 97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~ 139 (191)
T 3dou_A 97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQ 139 (191)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 8542211 11 1 2245789999999999 67776543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-10 Score=97.06 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC---CC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF---IP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~v~ 181 (283)
+...+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..|++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4558999999999999999998888899999999 888776543 36899999998762 23 499999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDEDG--LKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+....+..+.+.. ..++++++++|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8654443233322 5889999999999 6776654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=89.03 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=75.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC-C--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI-P--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~-p--~~D~v~~~~ 184 (283)
.....+|||+|||+|.++..+++. ..+++++|+ ++.++.+++ ..++++..+|+.+.. + .||+|++.
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~- 165 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD- 165 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC-
Confidence 566789999999999999999998 779999999 777776654 268999999999854 4 49999972
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.++. ..+++++.++|+| ||++++...
T Consensus 166 ----~~~~--~~~l~~~~~~L~~---gG~l~~~~~ 191 (248)
T 2yvl_A 166 ----VREP--WHYLEKVHKSLME---GAPVGFLLP 191 (248)
T ss_dssp ----SSCG--GGGHHHHHHHBCT---TCEEEEEES
T ss_pred ----CcCH--HHHHHHHHHHcCC---CCEEEEEeC
Confidence 3333 3679999999999 799888774
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-10 Score=91.86 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=74.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC------CCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCCCC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP------GIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p-- 175 (283)
.....+|||||||+|.++..+++..+ ..+++++|+ ++.++.+++ ..+++++.+|..++++
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45668999999999999999998765 379999999 777776654 2589999999987543
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.||+|++...+|++. +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 499999999998765 568889999 68777653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.6e-10 Score=94.22 Aligned_cols=96 Identities=19% Similarity=0.094 Sum_probs=69.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC--CC------CeEEE--EcCCCC-CCCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE--AD------NLKYI--AGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------rv~~~--~~d~~~-~~p~~D~v~~~~ 184 (283)
+....+|||||||+|.++..+++. .+++++|+.+++..+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456689999999999999999887 58999999445433322 11 68999 999987 533599999976
Q ss_pred cccCCCh----hH-HHHHHHHHHHhhccCCCCc--EEEEEe
Q 023384 185 VFHGLGD----ED-GLKILKKRRAAIASNGERG--KVIIID 218 (283)
Q Consensus 185 vlh~~~d----~~-~~~iL~~~~~~L~p~~~gg--~lli~d 218 (283)
. +.... .. ...+|+.+.++|+| || .+++-.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEe
Confidence 6 43322 11 23479999999999 78 766633
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=92.58 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=71.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC--C-CC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ--F-IP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~-~p-~~D~v~ 181 (283)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ + .+ .||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 3458999999999999999999888899999999 777766543 3689999999765 2 22 499999
Q ss_pred ecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+...-+..... ....++++++++|+| ||.+++.
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 84332201111 125889999999999 6766653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-10 Score=94.23 Aligned_cols=97 Identities=13% Similarity=0.197 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC--C-C------CCce
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ--F-I------PPAD 178 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~--~-~------p~~D 178 (283)
.+..+|||||||+|..+..+++.+| +.+++++|+ ++.++.+++ .++++++.+|..+ + + ..||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3457999999999999999999987 789999999 777776654 3579999999754 1 1 4599
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+|++... ......+++++.+.|+| ||.+++.+...
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 185 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLW 185 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCc
Confidence 9997643 34456889999999999 67766655433
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=106.57 Aligned_cols=104 Identities=15% Similarity=0.232 Sum_probs=83.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC---CCC--CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ---FIP--PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~---~~p--~~D~v~~~ 183 (283)
+....+|||||||.|.++..|++. +.+++++|. +..++.|+. .-+++|..+|..+ ..+ .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 445689999999999999999997 789999999 777776653 2468999999876 232 49999999
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.+|||.+|++...-+.++.+.|++ +++.++...+..+.
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKEE 179 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTTS
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEeccccc
Confidence 999999988766667778888988 67777777655443
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.02 E-value=4.1e-10 Score=97.63 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CCC--CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FIP--PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p--~~D~v 180 (283)
....+|||||||+|..++.+++..|..+++++|+ +.+++.+++ ..|++++.+|..+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888899999999 888776653 3689999999865 222 49999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhhccCCCCcEEEEE
Q 023384 181 LFKLVFHGLGDED--GLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 181 ~~~~vlh~~~d~~--~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
++....+....+. ...++++++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9855422111111 36889999999999 6766654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.2e-10 Score=94.93 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=71.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-----hHHHhcCCC----CCCeEEEEc-CCCC-CCCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-----PHVVANLPE----ADNLKYIAG-DMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~----~~rv~~~~~-d~~~-~~p~~D~v~~~~ 184 (283)
+.+..+|||||||+|.++..++++ .+++++|+ +..++.... .+++.++.+ |+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 455689999999999999999887 47899998 433332221 257999999 9987 544699999976
Q ss_pred ccc---CCChhH-HHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 185 VFH---GLGDED-GLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 185 vlh---~~~d~~-~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
.++ ...+.. ...+|+.++++|+| ||.+++ ....+
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~-kv~~~ 194 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV-KVLNP 194 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE-EESCC
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE-EeCCC
Confidence 553 222222 23689999999999 686655 44433
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-10 Score=97.60 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCC---CC-CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQF---IP-PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~---~p-~~D~v 180 (283)
+...+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..|++++.+|..+. .+ .||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4558999999999999999999888889999999 777765543 36899999998762 22 49999
Q ss_pred EecccccC---CChhH--HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 181 LFKLVFHG---LGDED--GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 181 ~~~~vlh~---~~d~~--~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++....|. -+.+. ...++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99776654 11111 35889999999999 67777653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-10 Score=97.05 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC--CC-C-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ--FI-P-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~~-p-~~D~v~ 181 (283)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+ +. + .||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888899999999 888766553 4689999999865 22 2 499999
Q ss_pred ecccccCCChh--HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 182 FKLVFHGLGDE--DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 182 ~~~vlh~~~d~--~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+....+..+.. ....++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 86544322211 124789999999999 56665543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=95.94 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=80.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC--CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP--PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p--~~D~v~~ 182 (283)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|+.+ + ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 566789999999999999999999887 89999999 766665543 3479999999987 3 44 3999996
Q ss_pred ------cccccCCChh-------HH-------HHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 183 ------KLVFHGLGDE-------DG-------LKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 183 ------~~vlh~~~d~-------~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
..+++..++. +. .++|+++.+.||| ||++++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 3455544432 11 5789999999999 788888776543
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=94.83 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=69.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCCC-ceEEEecccccCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIPP-ADAFLFKLVFHGL 189 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~ 189 (283)
.++|||||||+|.+++..+++ -..+++++|..++++.|++ .++|+++.+|+.+ ++|. +|+|++-..-+.+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l 162 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL 162 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred CCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence 479999999999999866665 3358999998656655543 6889999999998 7774 9999874433332
Q ss_pred Ch-hHHHHHHHHHHHhhccCCCCcEEE
Q 023384 190 GD-EDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 190 ~d-~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
-. .....++....+.|+| ||.++
T Consensus 163 ~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp TTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred cccchhhhHHHHHHhhCCC---CceEC
Confidence 22 2456788888899999 57654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=88.65 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=74.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCC-C--CCceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQF-I--PPADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~-~--p~~D~ 179 (283)
.....+|||||||+|..+..+++.. |..+++++|+ +..++.+++ .++++++.+|.... . ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4566899999999999999999885 6789999999 777776653 24899999998763 2 24999
Q ss_pred EEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|++...++++ ++++.+.|+| ||++++..
T Consensus 155 i~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAPVV--------PQALIDQLKP---GGRLILPV 182 (226)
T ss_dssp EEECSBBSSC--------CHHHHHTEEE---EEEEEEEE
T ss_pred EEECCchHHH--------HHHHHHhcCC---CcEEEEEE
Confidence 9999988755 3578899999 78877754
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-10 Score=98.15 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC----CCCceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF----IPPADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~----~p~~D~v~ 181 (283)
....+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .+|++++.+|..+. ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 4558999999999999999999888899999999 888766543 36899999998762 22499999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhhccCCCCcEEEEE
Q 023384 182 FKLVFHGLGDEDG--LKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 182 ~~~vlh~~~d~~~--~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+...-|.-+++.. ..++++++++|+| ||.+++.
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~ 221 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQ 221 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEE
Confidence 8554332222221 6889999999999 5666554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-10 Score=89.41 Aligned_cols=95 Identities=14% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--CCC--CceEEEecccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--FIP--PADAFLFKLVF 186 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~~p--~~D~v~~~~vl 186 (283)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 347999999999999998887743 48999999 888877764 2589999999876 332 49999998776
Q ss_pred cCCChhHHHHHHHHHHHh--hccCCCCcEEEEEee
Q 023384 187 HGLGDEDGLKILKKRRAA--IASNGERGKVIIIDI 219 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~--L~p~~~gg~lli~d~ 219 (283)
| ..+ ...+++.+.+. |+| ||.+++...
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~ 161 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVESE 161 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEEEC
Confidence 5 332 34667777664 999 677665543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=87.80 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=66.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCCCCCceEEEecccccCCChhH
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDED 193 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~ 193 (283)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+-...||+|++...+|++.+..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCch
Confidence 345679999999999999999887 5568999999 888877765 3389999999987214699999999999987754
Q ss_pred HHHHHHHHHHhh
Q 023384 194 GLKILKKRRAAI 205 (283)
Q Consensus 194 ~~~iL~~~~~~L 205 (283)
..++++++.+.+
T Consensus 128 ~~~~l~~~~~~~ 139 (200)
T 1ne2_A 128 DRAFIDKAFETS 139 (200)
T ss_dssp CHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc
Confidence 456777777665
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-11 Score=100.26 Aligned_cols=135 Identities=16% Similarity=0.114 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----C--CCeEEEEcCCCC-CCC-CceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----A--DNLKYIAGDMFQ-FIP-PADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~--~rv~~~~~d~~~-~~p-~~D~v~~~~vl 186 (283)
....+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ . .+++++.+|+.+ +.+ .||+|++...+
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred cCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence 356899999999999999999874 89999999 888877664 1 589999999988 422 59999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
|+..+.. ..+.+++++|+| ||.+ +++...... .+.... -.+....+++.+++...|.-.
T Consensus 155 ~~~~~~~--~~~~~~~~~L~p---gG~~-i~~~~~~~~------------~~~~~~---lp~~~~~~~~~~~l~~~g~~~ 213 (241)
T 3gdh_A 155 GGPDYAT--AETFDIRTMMSP---DGFE-IFRLSKKIT------------NNIVYF---LPRNADIDQVASLAGPGGQVE 213 (241)
T ss_dssp SSGGGGG--SSSBCTTTSCSS---CHHH-HHHHHHHHC------------SCEEEE---EETTBCHHHHHHTTCTTCCEE
T ss_pred CCcchhh--hHHHHHHhhcCC---ccee-HHHHHHhhC------------CceEEE---CCCCCCHHHHHHHhccCCCEE
Confidence 9877654 357789999999 6763 333211100 000000 122346778888888887665
Q ss_pred eeEEEcCC
Q 023384 267 YKITPIFG 274 (283)
Q Consensus 267 ~~~~~~~~ 274 (283)
++.....+
T Consensus 214 i~~~~~~~ 221 (241)
T 3gdh_A 214 IEQNFLNN 221 (241)
T ss_dssp EEEEEETT
T ss_pred EEehhhcC
Confidence 55544444
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=91.09 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCCCCCceEEEeccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQFIPPADAFLFKLV 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~~p~~D~v~~~~v 185 (283)
+...+|||||||+|..+..+++. + .+++++|+ +.+++.+++ .+|++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35579999999999999999988 7 89999999 888888775 258999999988733569999985
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.+++. .++++++++|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 34443 489999999999 6776664
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.97 E-value=6.2e-10 Score=94.53 Aligned_cols=102 Identities=22% Similarity=0.364 Sum_probs=75.0
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI 174 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~ 174 (283)
...+++ .++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 17 ~~~i~~-~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 17 INSIID-KAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285)
T ss_dssp HHHHHH-HTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHH-hcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence 344555 554 5567899999999999999999984 58999999 777765543 1589999999998 77
Q ss_pred CCceEEEecccccCCChhHHHHHHH--------------HH--HHhhccCCCCcEE
Q 023384 175 PPADAFLFKLVFHGLGDEDGLKILK--------------KR--RAAIASNGERGKV 214 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d~~~~~iL~--------------~~--~~~L~p~~~gg~l 214 (283)
+.||+|++.... +|+.+....+|. ++ +.+++| ||++
T Consensus 92 ~~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~ 143 (285)
T 1zq9_A 92 PFFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKL 143 (285)
T ss_dssp CCCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTT
T ss_pred hhhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCcc
Confidence 789998885443 455555555553 22 358899 6754
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=91.68 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=76.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CC-----C-CceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FI-----P-PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~-----p-~~D~v 180 (283)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|+.+ +. + .||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 556789999999999999999999877 89999999 777766543 3489999999877 32 3 59999
Q ss_pred Eecc------cccC---CChh-------HHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 181 LFKL------VFHG---LGDE-------DGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 181 ~~~~------vlh~---~~d~-------~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
++.- +++. |+.+ ...++|+++.+.||| ||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCC
Confidence 9862 2221 2221 236889999999999 78887766544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.9e-09 Score=87.17 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=81.3
Q ss_pred cCCCCeEEEEcCCc------cHHHHHHHHHCC-CCeEEEeechHHHhcCCCCCCeEE-EEcCCCC-CCC-CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGN------GSLSRIISEAFP-GIKCTVLDLPHVVANLPEADNLKY-IAGDMFQ-FIP-PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~------G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~rv~~-~~~d~~~-~~p-~~D~v~~~~v 185 (283)
+....+|||||||+ |. ..+++..| +.+++++|+.+.+ .++++ +.+|+.+ +++ .||+|++...
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV------SDADSTLIGDCATVHTANKWDLIISDMY 132 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB------CSSSEEEESCGGGCCCSSCEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC------CCCEEEEECccccCCccCcccEEEEcCC
Confidence 55678999999944 66 55566776 6899999994331 36889 9999988 554 4999998533
Q ss_pred ccC-----CC----hhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHH
Q 023384 186 FHG-----LG----DEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWA 256 (283)
Q Consensus 186 lh~-----~~----d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 256 (283)
.+. .. .+....+|+.++++||| ||++++...... ..+++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~l~ 181 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNADLY 181 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHHHH
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHHHH
Confidence 211 01 12345789999999999 788777432110 124677
Q ss_pred HHHHHCCCCeeeEE
Q 023384 257 KLFFDACFSHYKIT 270 (283)
Q Consensus 257 ~ll~~aGf~~~~~~ 270 (283)
+++++.||..+++.
T Consensus 182 ~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 182 KLMGHFSWWTAFVT 195 (290)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHHHcCCcEEEEE
Confidence 88888888877765
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-09 Score=93.99 Aligned_cols=121 Identities=15% Similarity=0.085 Sum_probs=90.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~ 184 (283)
+.+..+|||+|||+|.+++.+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ +.+ .||+|++.-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45668999999999999999999988779999999 888877764 2589999999998 554 499999965
Q ss_pred cccCCC-----hhH-HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHH
Q 023384 185 VFHGLG-----DED-GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKL 258 (283)
Q Consensus 185 vlh~~~-----d~~-~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 258 (283)
..+... -++ -..+++.+++.| + |+++++.. +.+.+++.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~----g~~~~i~~-------------------------------~~~~~~~~ 338 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL-E----KRGVFITT-------------------------------EKKAIEEA 338 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE-E----EEEEEEES-------------------------------CHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc-C----CeEEEEEC-------------------------------CHHHHHHH
Confidence 544221 111 256788888888 5 44444321 24567788
Q ss_pred HHHCCCCeeeEEEc
Q 023384 259 FFDACFSHYKITPI 272 (283)
Q Consensus 259 l~~aGf~~~~~~~~ 272 (283)
+.+.||+..+....
T Consensus 339 ~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 339 IAENGFEIIHHRVI 352 (373)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHcCCEEEEEEEE
Confidence 99999998887665
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-08 Score=81.94 Aligned_cols=88 Identities=19% Similarity=0.167 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCCCceEEEecccccCCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIPPADAFLFKLVFHGLG 190 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~ 190 (283)
....+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .-+++++.+|+.+-...||+|++.-.+|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 356799999999999999998873 347999999 777776654 2279999999987223699999999998887
Q ss_pred hhHHHHHHHHHHHhh
Q 023384 191 DEDGLKILKKRRAAI 205 (283)
Q Consensus 191 d~~~~~iL~~~~~~L 205 (283)
......+++++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 655567788777775
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.8e-09 Score=86.99 Aligned_cols=120 Identities=16% Similarity=0.055 Sum_probs=89.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC-CCceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI-PPADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~-p~~D~v~~~~v 185 (283)
...+.+|||+|||+|.+++.+++. ...+++++|+ |..++.+++ .++++++.+|..+ .. ..||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 566789999999999999999887 4578999999 888776654 6789999999988 32 24999988643
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
- .+...|..+.++|+| ||.+.+.+.+..+.. .....+.++++.++.|++
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~----------------------~~~~~e~i~~~~~~~g~~ 250 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYD 250 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCE
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEEeeeccccc----------------------chhHHHHHHHHHHHcCCc
Confidence 2 123678888899999 677766655432211 112456788899999987
Q ss_pred ee
Q 023384 266 HY 267 (283)
Q Consensus 266 ~~ 267 (283)
+.
T Consensus 251 v~ 252 (278)
T 3k6r_A 251 VE 252 (278)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-08 Score=90.26 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-C-CCceEEEecccccC-----
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-I-PPADAFLFKLVFHG----- 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-~-p~~D~v~~~~vlh~----- 188 (283)
...+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+++. . ..||+|++.-....
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~~ 115 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEAS 115 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCTT
T ss_pred CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCccccc
Confidence 45699999999999999999987 6789999999 7777666 6899999999983 3 35999999522211
Q ss_pred -----CChhHH-----------------HHHHHHHHHhhccCCCCcEEEEEee
Q 023384 189 -----LGDEDG-----------------LKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 189 -----~~d~~~-----------------~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..++.. ..+++++.+.|+| ||+++++-+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p 165 (421)
T 2ih2_A 116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP 165 (421)
T ss_dssp TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 223221 2568999999999 788877653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-08 Score=88.31 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=71.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEEcCCCCC-------CCCceEEE
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------AD-NLKYIAGDMFQF-------IPPADAFL 181 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-rv~~~~~d~~~~-------~p~~D~v~ 181 (283)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .+ +++++.+|+++. -..||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999864 49999999 888877664 22 599999999872 12599999
Q ss_pred ecccccC-------C-ChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 182 FKLVFHG-------L-GDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 182 ~~~vlh~-------~-~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+.-.... + ..++...+++++.+.|+| ||.+++..
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~ 272 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLT 272 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 8322100 0 123456889999999999 68766654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-09 Score=89.14 Aligned_cols=89 Identities=16% Similarity=0.314 Sum_probs=64.6
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p 175 (283)
...+++ ..+ .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 31 ~~~i~~-~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 31 LDKIIY-AAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHH-HHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred HHHHHH-hcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence 344555 444 566789999999999999999987 568999999 777766553 3689999999998 677
Q ss_pred CceEEEecccccCCChhHHHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKIL 198 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL 198 (283)
.||+|++.-. ++++.+...++|
T Consensus 106 ~~D~Vv~n~p-y~~~~~~~~~ll 127 (299)
T 2h1r_A 106 KFDVCTANIP-YKISSPLIFKLI 127 (299)
T ss_dssp CCSEEEEECC-GGGHHHHHHHHH
T ss_pred cCCEEEEcCC-cccccHHHHHHH
Confidence 8999988554 456666666666
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.1e-09 Score=90.35 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCC--CceEEEecc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPG-----IKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIP--PADAFLFKL 184 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p--~~D~v~~~~ 184 (283)
...+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++.+..+|.+++.+ .||+|++.-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999998765 68999999 777776654 3478999999998433 599999988
Q ss_pred cccCCChhHH----------------HHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDEDG----------------LKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~~----------------~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.++.++.++. ..+++++.+.|+| ||+++++.
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~ 256 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLV 256 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEE
Confidence 8776654432 2579999999999 78877765
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=91.72 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=78.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-C--CC--CceEEEe--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-F--IP--PADAFLF-- 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~p--~~D~v~~-- 182 (283)
.....+|||+|||+|..+..+++..|+.+++++|+ +..++.+++ .-++.++.+|+.+ + ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45668999999999999999999999899999999 666655543 3368899999987 3 33 4999996
Q ss_pred ----cccccCCChh-------HH-------HHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 183 ----KLVFHGLGDE-------DG-------LKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 183 ----~~vlh~~~d~-------~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
..+++..++. +. .++|+++.+.||| ||++++.+..+
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 2344443331 11 4889999999999 78888877544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.1e-08 Score=89.07 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEec--
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFK-- 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~-- 183 (283)
...+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 578999999 777766553 3579999999987 3 34 49999982
Q ss_pred ----ccc-------cCCChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 ----LVF-------HGLGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ----~vl-------h~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.++ ..|+.++ -.++|+++.+.||| ||++++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccC
Confidence 122 2344332 24789999999999 78887766544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.8e-09 Score=93.06 Aligned_cols=103 Identities=12% Similarity=0.084 Sum_probs=76.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-C--CC-CceEEEec-
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-F--IP-PADAFLFK- 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~p-~~D~v~~~- 183 (283)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ .-.+.++.+|..+ + .+ .||+|++.
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 566789999999999999999999875 78999999 777766654 2228999999876 3 23 49999961
Q ss_pred -----ccc-------cCCChhHH-------HHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 -----LVF-------HGLGDEDG-------LKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 -----~vl-------h~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.++ ..|+.++. .++|+++.+.||| ||+++.....+
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~ 232 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF 232 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence 122 23333332 6789999999999 78877765433
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=82.48 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=95.1
Q ss_pred CCeEEEEcCCccHHHHHH--------HHHC-------CCCeEEEeechHHH--------hcCCC-----------C-CC-
Q 023384 119 LGSLVDVGGGNGSLSRII--------SEAF-------PGIKCTVLDLPHVV--------ANLPE-----------A-DN- 162 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l--------~~~~-------p~~~~~~~D~~~~~--------~~a~~-----------~-~r- 162 (283)
..+|+|+|||+|..+..+ .+++ |.++++.-|+|..- ...++ . ..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 478999999999988876 3333 78899999986431 22111 0 11
Q ss_pred -eEEEEcCCCC-CCC--CceEEEecccccCCCh------------------------------------hHHHHHHHHHH
Q 023384 163 -LKYIAGDMFQ-FIP--PADAFLFKLVFHGLGD------------------------------------EDGLKILKKRR 202 (283)
Q Consensus 163 -v~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d------------------------------------~~~~~iL~~~~ 202 (283)
+.-+.+.|.. .+| .+|+++++.+||.+++ .+...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346678887 566 3999999999998772 13456799999
Q ss_pred HhhccCCCCcEEEEEeeecCCCccch----hhh----hhhhhccccccc----------ccCCccCCHHHHHHHHH-HCC
Q 023384 203 AAIASNGERGKVIIIDIVINAEEEEH----ELT----ETKFLFDIVMSV----------NATGKERTESEWAKLFF-DAC 263 (283)
Q Consensus 203 ~~L~p~~~gg~lli~d~~~~~~~~~~----~~~----~~~~~~~~~~~~----------~~~~~~~t~~e~~~ll~-~aG 263 (283)
+.|+| ||++++.-...++..... ... ....+.++..-. ...-..++.+|++++++ ++|
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGS 289 (374)
T ss_dssp HHEEE---EEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCS
T ss_pred HHhCC---CCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCC
Confidence 99999 788877766554432100 000 000111111000 01123468999999998 599
Q ss_pred CCeeeEEE
Q 023384 264 FSHYKITP 271 (283)
Q Consensus 264 f~~~~~~~ 271 (283)
|++.++..
T Consensus 290 F~I~~le~ 297 (374)
T 3b5i_A 290 FAIDKLVV 297 (374)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEE
Confidence 99877643
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=90.75 Aligned_cols=103 Identities=15% Similarity=0.168 Sum_probs=75.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~ 183 (283)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 566789999999999999999998764 78999999 777766553 3579999999876 3 33 49999983
Q ss_pred c------cccC-------CChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 L------VFHG-------LGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 ~------vlh~-------~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
- +++. |+.++ ..++|+++.+.||| ||+++.....+
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence 2 2221 22111 13789999999999 78877766444
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-08 Score=82.72 Aligned_cols=82 Identities=12% Similarity=0.288 Sum_probs=59.4
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCC-c
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPP-A 177 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~-~ 177 (283)
..+++ .++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 20 ~~i~~-~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 20 DKIMT-NIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHT-TCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHH-hCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 44455 444 4566899999999999999999985 78999999 777766553 3689999999998 6662 3
Q ss_pred eEEEecccccCCCh
Q 023384 178 DAFLFKLVFHGLGD 191 (283)
Q Consensus 178 D~v~~~~vlh~~~d 191 (283)
+..++++.-++++.
T Consensus 95 ~~~vv~nlPy~~~~ 108 (244)
T 1qam_A 95 SYKIFGNIPYNIST 108 (244)
T ss_dssp CCEEEEECCGGGHH
T ss_pred CeEEEEeCCcccCH
Confidence 33444444444443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.70 E-value=9.3e-09 Score=85.26 Aligned_cols=104 Identities=14% Similarity=0.232 Sum_probs=73.7
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC---
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--- 175 (283)
..+++ .++ .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 19 ~~i~~-~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 93 (245)
T 1yub_A 19 NQIIK-QLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHH-HCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHH-hcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence 44555 444 5566799999999999999999985 78999999 778877765 3579999999998 655
Q ss_pred CceEEEecccccCCChhHHHHHH--------------HHHHHhhccCCCCcEEEEEe
Q 023384 176 PADAFLFKLVFHGLGDEDGLKIL--------------KKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL--------------~~~~~~L~p~~~gg~lli~d 218 (283)
.| .|+ ++.-++.+.+....++ +.+.+.|+| ||++.++.
T Consensus 94 ~f-~vv-~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 94 RY-KIV-GNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp EE-EEE-EECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred Cc-EEE-EeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 25 333 3333333333333333 568899999 68776544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.5e-08 Score=87.27 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CC-CeEEEEcCCCC--C-C---C-CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------AD-NLKYIAGDMFQ--F-I---P-PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-rv~~~~~d~~~--~-~---p-~~D~v 180 (283)
....+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+ +++|+.+|+++ + . + .||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999862 348999999 888877664 23 89999999977 2 1 2 59999
Q ss_pred Eecccc-----cCCCh--hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 181 LFKLVF-----HGLGD--EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 181 ~~~~vl-----h~~~d--~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++.-.. +...+ +...++++.+.+.|+| ||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 984322 11221 3345678899999999 56655543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.67 E-value=9.5e-08 Score=84.83 Aligned_cols=98 Identities=7% Similarity=0.003 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------C-C-CeEEEEcCCCCCC-------CCceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------A-D-NLKYIAGDMFQFI-------PPADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-rv~~~~~d~~~~~-------p~~D~v 180 (283)
....+|||+|||+|.++..+++.. ..+++++|+ +..++.+++ . . +++++.+|+++.. ..||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999874 458999999 788776654 2 3 7999999998721 259999
Q ss_pred EecccccCCC-------hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 181 LFKLVFHGLG-------DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 181 ~~~~vlh~~~-------d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++.-.....+ ......++.++.+.|+| ||.+++..
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 339 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFS 339 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 9853221110 13456889999999999 67666544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9.6e-08 Score=84.38 Aligned_cols=97 Identities=10% Similarity=0.088 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC------C-CceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI------P-PADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~------p-~~D~v~~~ 183 (283)
...+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+++.. + .||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999998 668999999 888877664 245999999998721 2 59999984
Q ss_pred ccccCCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 184 LVFHGLGD-------EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 184 ~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
-..+..+. +....+++++.+.|+| ||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 33222211 3456789999999999 677766653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.2e-08 Score=85.15 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=73.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~~D~v~~~~vlh 187 (283)
+....+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ .++++++.+|.++....||+|++.-.-
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~- 268 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK- 268 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT-
T ss_pred cCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH-
Confidence 35668999999999999999 76 5789999999 888776654 368999999999844569999984221
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
....+++.+.+.|+| ||.+++.+...
T Consensus 269 -----~~~~~l~~~~~~L~~---gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 -----FAHKFIDKALDIVEE---GGVIHYYTIGK 294 (336)
T ss_dssp -----TGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred -----hHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence 123789999999999 67777766543
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.1e-07 Score=82.40 Aligned_cols=84 Identities=10% Similarity=0.164 Sum_probs=62.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC-----C--CceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI-----P--PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~-----p--~~D~v~ 181 (283)
.....+|||+|||+|.++..+++. ..+++++|+ +++++.|++ ..+++|+.+|+.+.+ + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 456689999999999999999987 678999999 888877664 348999999998732 1 499999
Q ss_pred ecccccCCChhHHHHHHHHHHHhhcc
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
+.- +...+..+++.+.+ ++|
T Consensus 362 ~dP-----Pr~g~~~~~~~l~~-~~p 381 (433)
T 1uwv_A 362 LDP-----ARAGAAGVMQQIIK-LEP 381 (433)
T ss_dssp ECC-----CTTCCHHHHHHHHH-HCC
T ss_pred ECC-----CCccHHHHHHHHHh-cCC
Confidence 832 22222345555543 677
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-07 Score=79.77 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCeEEEEcCCccHHHHHHHHH-----------------CCCCeEEEeech-----------HHH-hcC----CCCCCeEE
Q 023384 119 LGSLVDVGGGNGSLSRIISEA-----------------FPGIKCTVLDLP-----------HVV-ANL----PEADNLKY 165 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~~-~~a----~~~~rv~~ 165 (283)
..+|+|+||++|..+..+... .|.++++.-|+| +.. +.. ....+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999999887766 477889999987 111 100 01112234
Q ss_pred ---EEcCCCC-CCC--CceEEEecccccCCChhH-------------------------H------------HHHHHHHH
Q 023384 166 ---IAGDMFQ-FIP--PADAFLFKLVFHGLGDED-------------------------G------------LKILKKRR 202 (283)
Q Consensus 166 ---~~~d~~~-~~p--~~D~v~~~~vlh~~~d~~-------------------------~------------~~iL~~~~ 202 (283)
++|.|.. .+| .+|+++++.+||.+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776 566 399999999999766421 1 22388889
Q ss_pred HhhccCCCCcEEEEEeeecCCC--ccchhhhhhhhhccccccc----------ccCCccCCHHHHHHHHHHCC-CCeeeE
Q 023384 203 AAIASNGERGKVIIIDIVINAE--EEEHELTETKFLFDIVMSV----------NATGKERTESEWAKLFFDAC-FSHYKI 269 (283)
Q Consensus 203 ~~L~p~~~gg~lli~d~~~~~~--~~~~~~~~~~~~~~~~~~~----------~~~~~~~t~~e~~~ll~~aG-f~~~~~ 269 (283)
+.|+| ||++++.-...++. ...........+.++.... ...-..++.+|++++++++| |++.++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 99999 78877766655543 2110000111122111100 01234468999999999985 777665
Q ss_pred E
Q 023384 270 T 270 (283)
Q Consensus 270 ~ 270 (283)
.
T Consensus 290 e 290 (384)
T 2efj_A 290 E 290 (384)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.62 E-value=4.4e-08 Score=86.97 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC--C----C-CceEEEe
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF--I----P-PADAFLF 182 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~--~----p-~~D~v~~ 182 (283)
...+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+++. . + .||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6689999999999999999986 4458999999 878776664 22899999998872 1 2 5999998
Q ss_pred cccccCCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 183 KLVFHGLGD-------EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 183 ~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.-..+..+. .....+++++.+.|+| ||.+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 543222222 4456889999999999 677766653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=80.63 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=62.8
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCC-
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPP- 176 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~- 176 (283)
...+++ ..+ .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 39 ~~~Iv~-~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 39 VNKAVE-SAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS
T ss_pred HHHHHH-hcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC
Confidence 345555 554 566789999999999999999998 578999999 777776654 4789999999998 7664
Q ss_pred -ceEEEeccccc
Q 023384 177 -ADAFLFKLVFH 187 (283)
Q Consensus 177 -~D~v~~~~vlh 187 (283)
||+|+.+...|
T Consensus 114 ~fD~Iv~NlPy~ 125 (295)
T 3gru_A 114 DFNKVVANLPYQ 125 (295)
T ss_dssp CCSEEEEECCGG
T ss_pred CccEEEEeCccc
Confidence 99998765443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.3e-07 Score=82.03 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCC---CC-CceEEEecccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQF---IP-PADAFLFKLVF 186 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~---~p-~~D~v~~~~vl 186 (283)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ .-..++..+|.++. .+ .||+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 34689999999999999999987 445999999 888877664 22235779998872 22 39999985433
Q ss_pred cCCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 187 HGLGD-------EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 187 h~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
...+. ..-.++++.+.+.|+| ||.+++...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~ 327 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSC 327 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence 22111 2335789999999999 787776654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-07 Score=83.99 Aligned_cols=103 Identities=8% Similarity=0.033 Sum_probs=76.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG--------------------------------------IKCTVLDL-PHVVAN 156 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~~~~ 156 (283)
+.+...|||.+||+|.++++.+....+ .+++++|+ +.+++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 566789999999999999988876543 56999999 888877
Q ss_pred CCC-------CCCeEEEEcCCCC-CCC-CceEEEecccccC-CC-hhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 157 LPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHG-LG-DEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 157 a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
|++ .++++++.+|+++ +.+ .||+|++.-..+. .. .++...+.+.+.+.|++ -+|++++|+..
T Consensus 279 Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~ 351 (393)
T 3k0b_A 279 AKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEEEEEC
T ss_pred HHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEEEEEC
Confidence 664 4579999999998 544 4999999743321 12 24566777777777776 33788888764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.8e-07 Score=80.35 Aligned_cols=103 Identities=12% Similarity=0.036 Sum_probs=78.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG--------------------------------------IKCTVLDL-PHVVAN 156 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~~~~ 156 (283)
+.+...|||.+||+|.++++.+....+ .+++++|+ +.+++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 566789999999999999998875544 56999999 888877
Q ss_pred CCC-------CCCeEEEEcCCCC-CCC-CceEEEecccccC-C-ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 157 LPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHG-L-GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 157 a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~-~-~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
|++ .++++++.+|+.+ +.+ .||+|++.=..+. + ..++...+.+.+.+.|++ -+|+++.|+..
T Consensus 272 Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~ 344 (384)
T 3ldg_A 272 ARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQFILTN 344 (384)
T ss_dssp HHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEEEEES
T ss_pred HHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEEEEEC
Confidence 664 4579999999998 544 5999999744321 2 345677788888888876 33788888764
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=85.66 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------C--CCeEEEEcCCCC-C
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF-------------PGIKCTVLDL-PHVVANLPE------A--DNLKYIAGDMFQ-F 173 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~--~rv~~~~~d~~~-~ 173 (283)
....+|+|.|||+|.++..+++.. +..+++++|+ +.+++.|+. . .++.+..+|.+. +
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 445799999999999999988764 4578999999 777766543 1 168899999998 4
Q ss_pred CC-CceEEEecccccCCChh---------------HHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 174 IP-PADAFLFKLVFHGLGDE---------------DGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 174 ~p-~~D~v~~~~vlh~~~d~---------------~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.. .||+|++.-.++..... .-..+++++.+.|+| ||++.++-+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 43 59999998666543211 124779999999999 798887764
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-07 Score=77.97 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=74.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCCC----CCceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQFI----PPADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~----p~~D~ 179 (283)
-++.++||-||||.|..++++++..|..+++++|+ |.+++.+++ ..|++++.+|.++-+ ..||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 35668999999999999999998877789999999 888876653 589999999998832 24999
Q ss_pred EEecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 180 FLFKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 180 v~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
|++-..= ..... -....++.++++|+| ||.++..
T Consensus 161 Ii~D~~d-p~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 161 IISDCTD-PIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EEESCCC-CCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEEeCCC-cCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 9984321 11111 124679999999999 5655543
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.5e-07 Score=80.71 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=77.3
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC--------------------------------------CeEEEeec-hHHHhc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG--------------------------------------IKCTVLDL-PHVVAN 156 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~~~D~-~~~~~~ 156 (283)
+.+..+|||++||+|.++++.+....+ .+++++|+ +.+++.
T Consensus 193 ~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~ 272 (385)
T 3ldu_A 193 WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDI 272 (385)
T ss_dssp CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHH
Confidence 556789999999999999998876432 57999999 888887
Q ss_pred CCC-------CCCeEEEEcCCCC-CCC-CceEEEecccccC-CC-hhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 157 LPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHG-LG-DEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 157 a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
|++ .++++|..+|+.+ +.+ .+|+|++.-..+. +. .++...+.+.+.+.|++ -+|+++.++..
T Consensus 273 Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~iit~ 345 (385)
T 3ldu_A 273 ARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYYLITS 345 (385)
T ss_dssp HHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEEEEES
T ss_pred HHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEEEEEC
Confidence 765 3479999999998 444 4999999654432 22 34566778888888876 23678877753
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-07 Score=88.40 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=82.4
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhh--cCCCCeEEEEcCCccHHHHHHHHHC----CCCeEEEeec
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQI--FEGLGSLVDVGGGNGSLSRIISEAF----PGIKCTVLDL 150 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~D~ 150 (283)
..||.+++++-.-..|.+++... +.+ ..... ......|+|||||+|-++...+++. -.+++.+++-
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~A-------l~d-~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEk 393 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKC-------LLD-RVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEK 393 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------HHH-HSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred hhhhhhcCChhhHHHHHHHHHHH-------HHH-hhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 34777888887777776665432 111 11100 1233579999999999955443332 2347889998
Q ss_pred hHHHhcCCC-------CCCeEEEEcCCCC-CCCC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEE
Q 023384 151 PHVVANLPE-------ADNLKYIAGDMFQ-FIPP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 151 ~~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~l 214 (283)
.++...+.+ .++|+++.+|+.+ ..|. +|+|++-..=...-.|-...+|....+.||| ||.+
T Consensus 394 np~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 394 NPNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp CHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred CHHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 445444433 7899999999999 7774 9999875433333344456778777889999 5654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-07 Score=79.73 Aligned_cols=77 Identities=25% Similarity=0.285 Sum_probs=61.6
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-C--C-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-F--I- 174 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--~- 174 (283)
..+++ .+. .....+|||+|||+|..+..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ + +
T Consensus 16 ~e~l~-~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 16 REVIE-FLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHH-HHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHH-hcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 44455 444 55678999999999999999999999899999999 888877654 3689999999876 3 1
Q ss_pred ----CCceEEEecc
Q 023384 175 ----PPADAFLFKL 184 (283)
Q Consensus 175 ----p~~D~v~~~~ 184 (283)
..||.|++.-
T Consensus 93 ~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 93 TLGIEKVDGILMDL 106 (301)
T ss_dssp HTTCSCEEEEEEEC
T ss_pred hcCCCCCCEEEEcC
Confidence 3599998743
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.6e-07 Score=75.16 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=65.3
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-CCCC-c-
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-FIPP-A- 177 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p~-~- 177 (283)
...+++ ..+ .....+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. +
T Consensus 20 ~~~iv~-~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 95 (249)
T 3ftd_A 20 LKKIAE-ELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGK 95 (249)
T ss_dssp HHHHHH-HTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCS
T ss_pred HHHHHH-hcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccC
Confidence 344555 554 556789999999999999999987 5679999999 777776654 4689999999998 6653 2
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHh
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAA 204 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~ 204 (283)
+.+++.+.=++.+. .++.++.+.
T Consensus 96 ~~~vv~NlPy~i~~----~il~~ll~~ 118 (249)
T 3ftd_A 96 ELKVVGNLPYNVAS----LIIENTVYN 118 (249)
T ss_dssp SEEEEEECCTTTHH----HHHHHHHHT
T ss_pred CcEEEEECchhccH----HHHHHHHhc
Confidence 34555554444443 444444443
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=5.1e-07 Score=75.70 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=65.0
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---CCCeEEEEcCCCC-CCC---C
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---ADNLKYIAGDMFQ-FIP---P 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~rv~~~~~d~~~-~~p---~ 176 (283)
..+++ ..+ .... +|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .
T Consensus 37 ~~Iv~-~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~ 110 (271)
T 3fut_A 37 RRIVE-AAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQ 110 (271)
T ss_dssp HHHHH-HHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCT
T ss_pred HHHHH-hcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccC
Confidence 44555 554 5566 99999999999999999984 68999999 777766554 4689999999998 665 4
Q ss_pred ceEEEecccccCCChhHHHHHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKK 200 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~ 200 (283)
+|.|+.+- -++.+.+-..++|..
T Consensus 111 ~~~iv~Nl-Py~iss~il~~ll~~ 133 (271)
T 3fut_A 111 GSLLVANL-PYHIATPLVTRLLKT 133 (271)
T ss_dssp TEEEEEEE-CSSCCHHHHHHHHHH
T ss_pred ccEEEecC-cccccHHHHHHHhcC
Confidence 67665544 445566555555544
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.43 E-value=6e-06 Score=71.31 Aligned_cols=142 Identities=13% Similarity=0.119 Sum_probs=104.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------------------------CCCeEEEEcC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE---------------------------ADNLKYIAGD 169 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~rv~~~~~d 169 (283)
.+...||.+|||.......+...+|+++++-+|.|++++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4568999999999999999999889999999999988754321 2689999999
Q ss_pred CCC-CC----------CC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhh-h-h
Q 023384 170 MFQ-FI----------PP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTET-K-F 235 (283)
Q Consensus 170 ~~~-~~----------p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~-~-~ 235 (283)
+.+ +. ++ ..++++--+|+.++.+++.++|+.+.+.. | +|.+++.|.+.+..... ++... . .
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~-~fg~~m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPND-RFGAIMQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTC-CHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcc-hHHHHHHHH
Confidence 987 32 12 57889999999999999999999999987 4 48888899887722111 11110 0 0
Q ss_pred h---cccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 236 L---FDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 236 ~---~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
. ....+. ......+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~--~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMP--TLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCT--TTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCccc--ccccCCCHHHHHHHHHHCCCC
Confidence 0 111111 112345889999999999997
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=75.23 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHH----------------CCCCeEEEeechHH-H----hcCCC---CCCe---EEEEcC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEA----------------FPGIKCTVLDLPHV-V----ANLPE---ADNL---KYIAGD 169 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~----------------~p~~~~~~~D~~~~-~----~~a~~---~~rv---~~~~~d 169 (283)
+...+|+|+||++|..+..+... .|.++++.-|+|.. . ..... ..+- .-++|.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34467999999999877654433 56788899999642 1 11111 1122 235678
Q ss_pred CCC-CCC--CceEEEecccccCCCh-------------------------------hHHHHHHHHHHHhhccCCCCcEEE
Q 023384 170 MFQ-FIP--PADAFLFKLVFHGLGD-------------------------------EDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 170 ~~~-~~p--~~D~v~~~~vlh~~~d-------------------------------~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
|.. .+| .+|+++++..||.+++ .+...+|+..++.|+| ||+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 887 567 3999999999997764 1334569999999999 78888
Q ss_pred EEeeecCCCccchh----hh--hhhhhccccccc----------ccCCccCCHHHHHHHHHHCCC-CeeeE
Q 023384 216 IIDIVINAEEEEHE----LT--ETKFLFDIVMSV----------NATGKERTESEWAKLFFDACF-SHYKI 269 (283)
Q Consensus 216 i~d~~~~~~~~~~~----~~--~~~~~~~~~~~~----------~~~~~~~t~~e~~~ll~~aGf-~~~~~ 269 (283)
+.-...++...... +. ....+.++..-. ...-..++.+|++++++++|+ ++.++
T Consensus 207 l~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 207 LTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 77766655421000 00 011121111100 012345689999999999964 66554
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=72.24 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=53.7
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP 175 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p 175 (283)
...+++ ..+ .....+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 18 ~~~iv~-~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVS-AIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHH-HHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHH-hcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 344555 554 5667899999999999999999874 68999999 777776654 4789999999998 653
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.7e-07 Score=79.19 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=65.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC-CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh 187 (283)
.....+|||+|||+|.++..+++. ..+++++|+ +++++.+++ .. ++|+.+|+++..+ .||+|++.-.-.
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRA 364 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTT
T ss_pred cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCcc
Confidence 455689999999999999999886 468999999 888877764 23 9999999998444 699999844321
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
... ..+++.+. .|+| +|.+++.
T Consensus 365 g~~----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 365 GLH----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp CSC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred chH----HHHHHHHH-hcCC---CcEEEEE
Confidence 111 13455554 4898 5655553
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1e-06 Score=83.53 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=72.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------C-CCeEEEEcCCCCC---CC-CceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------A-DNLKYIAGDMFQF---IP-PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~rv~~~~~d~~~~---~p-~~D~v~~ 182 (283)
.....+|||+|||+|.++..+++.. ..+++.+|+ +.+++.+++ . ++++++.+|.++. .. .||+|++
T Consensus 537 ~~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 537 MSKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp HCTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred hcCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence 3456899999999999999988753 346999999 778777664 2 5899999999872 22 5999998
Q ss_pred ccccc--------CCC-hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 183 KLVFH--------GLG-DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 183 ~~vlh--------~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.-.-. .+. .....++++++.+.|+| ||.+++..
T Consensus 616 DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~ 657 (703)
T 3v97_A 616 DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN 657 (703)
T ss_dssp CCCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 44211 111 23456889999999999 67766433
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.34 E-value=5.4e-07 Score=74.86 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=59.7
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCC-
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPP- 176 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~- 176 (283)
...+++ ... .....+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 10 ~~~iv~-~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~ 84 (252)
T 1qyr_A 10 IDSIVS-AIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp HHHHHH-HHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred HHHHHH-hcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence 344555 444 5666899999999999999 54 554444999999 888877665 2489999999988 6543
Q ss_pred c-----eEEEecccccCCChhHHHHHH
Q 023384 177 A-----DAFLFKLVFHGLGDEDGLKIL 198 (283)
Q Consensus 177 ~-----D~v~~~~vlh~~~d~~~~~iL 198 (283)
+ +.+++++.-++.+.+-..++|
T Consensus 85 ~~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 85 AEKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred hcccCCceEEEECCCCCccHHHHHHHH
Confidence 2 344444444444443333333
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-07 Score=77.88 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=54.7
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-CCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-FIPP 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p~ 176 (283)
..+++ ..+ .....+|||||||+|.++..++++.+. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++.
T Consensus 32 ~~iv~-~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVA-AIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHH-HHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHH-hcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 44555 554 566789999999999999999998654 55999999 888777654 4689999999998 6654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.7e-06 Score=62.74 Aligned_cols=76 Identities=16% Similarity=0.085 Sum_probs=56.9
Q ss_pred cCCCCeEEEEcCCcc-HHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCC----CceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGGNG-SLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIP----PADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p----~~D~v~~~~vlh~~ 189 (283)
.....+|||||||+| ..+..|++. .+..+++.|+ |..++ ++..|+|+|.. +||+|...+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir----- 97 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR----- 97 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred CCCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence 445579999999999 588888764 4788999998 55444 89999999654 699998766
Q ss_pred ChhHHHHHHHHHHHhhc
Q 023384 190 GDEDGLKILKKRRAAIA 206 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~ 206 (283)
++.+...-+.++++...
T Consensus 98 PP~El~~~i~~lA~~v~ 114 (153)
T 2k4m_A 98 PPAEIHSSLMRVADAVG 114 (153)
T ss_dssp CCTTTHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555666666666654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-06 Score=70.89 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHH-------CCC-----CeEEEeec-h---HHHhcC-----------C------------
Q 023384 118 GLGSLVDVGGGNGSLSRIISEA-------FPG-----IKCTVLDL-P---HVVANL-----------P------------ 158 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~------------ 158 (283)
...+|||||+|+|..+..+++. .|+ ++++.++. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3468999999999999887765 674 58899987 5 222111 0
Q ss_pred ------C--CCCeEEEEcCCCC--C-CC-----CceEEEeccc-ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 159 ------E--ADNLKYIAGDMFQ--F-IP-----PADAFLFKLV-FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 159 ------~--~~rv~~~~~d~~~--~-~p-----~~D~v~~~~v-lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+ ..+++++.||..+ + .+ .||+|++--. -..-++--...+|+.+++.|+| ||.++...
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tys--- 213 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFT--- 213 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESC---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEe---
Confidence 1 2456789999866 2 22 4899998421 1000110124789999999999 67655311
Q ss_pred CCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeE
Q 023384 222 NAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKI 269 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 269 (283)
. ...+++.|.++||++.++
T Consensus 214 -a----------------------------a~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 214 -S----------------------------AGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp -C----------------------------BHHHHHHHHHHTEEEEEE
T ss_pred -C----------------------------CHHHHHHHHHCCCEEEeC
Confidence 0 124678889999987654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=80.55 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=79.8
Q ss_pred chhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-------------CCC
Q 023384 77 KFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-------------PGI 143 (283)
Q Consensus 77 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~ 143 (283)
..|+.+.+++-+...|.+++... +.+ ... .-.+...|||||||+|.++...+++. ...
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~a-------l~d-~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~ 447 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGA-------LKD-LGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKV 447 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH-------HHH-HHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHH-------HHH-hhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCcccccccccccc
Confidence 34666777776666666655432 112 111 01124679999999999975432221 235
Q ss_pred eEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CC------C-CceEEEecccccCCChhHHHHHHHHHHHhhccC
Q 023384 144 KCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FI------P-PADAFLFKLVFHGLGDEDGLKILKKRRAAIASN 208 (283)
Q Consensus 144 ~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~------p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~ 208 (283)
+++++|. |..+...+. .++|+++.+|+.+ .. | ..|+|+.-..=.....+-....|..+.+.|+|
T Consensus 448 kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp- 526 (745)
T 3ua3_A 448 KLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP- 526 (745)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT-
T ss_pred EEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC-
Confidence 8999998 544322221 6889999999998 55 4 59999886653323344456778888899999
Q ss_pred CCCcE
Q 023384 209 GERGK 213 (283)
Q Consensus 209 ~~gg~ 213 (283)
||.
T Consensus 527 --~Gi 529 (745)
T 3ua3_A 527 --TTI 529 (745)
T ss_dssp --TCE
T ss_pred --CcE
Confidence 564
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=4e-06 Score=69.46 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=65.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHh-cCCC----CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVA-NLPE----ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~-~a~~----~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
+....+|||||||+|.++..+++..+..+++++|+..-+. .... ..++.+...++.. +++ .+|+|++....+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 5666799999999999999888876666677777642221 1111 1134444555432 333 499999976554
Q ss_pred ---CCChh-HHHHHHHHHHHhhccCCCC-cEEEEEeeec
Q 023384 188 ---GLGDE-DGLKILKKRRAAIASNGER-GKVIIIDIVI 221 (283)
Q Consensus 188 ---~~~d~-~~~~iL~~~~~~L~p~~~g-g~lli~d~~~ 221 (283)
.+.|. ....+|+.+.+.|+| | |.+++ ..+.
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~ 186 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLA 186 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESC
T ss_pred cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecC
Confidence 12232 334568999999999 6 76555 5554
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.4e-06 Score=78.18 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=71.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH------------------------------------------CCCCeEEEeec-hH
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA------------------------------------------FPGIKCTVLDL-PH 152 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~p~~~~~~~D~-~~ 152 (283)
+.+...|||.+||+|.++++.+.. .+..+++++|+ +.
T Consensus 188 ~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~ 267 (703)
T 3v97_A 188 WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDAR 267 (703)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHH
T ss_pred CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHH
Confidence 556789999999999999987764 23468999999 88
Q ss_pred HHhcCCC-------CCCeEEEEcCCCC-CCC----CceEEEecccccC-C-ChhHHHHHHHHHHHhhc---cCCCCcEEE
Q 023384 153 VVANLPE-------ADNLKYIAGDMFQ-FIP----PADAFLFKLVFHG-L-GDEDGLKILKKRRAAIA---SNGERGKVI 215 (283)
Q Consensus 153 ~~~~a~~-------~~rv~~~~~d~~~-~~p----~~D~v~~~~vlh~-~-~d~~~~~iL~~~~~~L~---p~~~gg~ll 215 (283)
+++.|+. .++++|..+|+.+ ..| .+|+|+++=.... + .+++...+.+.+.+.|+ | ||++.
T Consensus 268 av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~---g~~~~ 344 (703)
T 3v97_A 268 VIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFG---GWNLS 344 (703)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCT---TCEEE
T ss_pred HHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCC---CCeEE
Confidence 8877664 4569999999987 323 5899999733321 1 23445555655555544 6 78888
Q ss_pred EEee
Q 023384 216 IIDI 219 (283)
Q Consensus 216 i~d~ 219 (283)
|+..
T Consensus 345 ilt~ 348 (703)
T 3v97_A 345 LFSA 348 (703)
T ss_dssp EEES
T ss_pred EEeC
Confidence 8763
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00022 Score=61.36 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=104.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeechHHHhcCC-----------------------------CCCCeEEEE
Q 023384 118 GLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDLPHVVANLP-----------------------------EADNLKYIA 167 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~rv~~~~ 167 (283)
+...||-+|||.=.....+... .++++++-+|.|++++.-+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5689999999998888888765 3688999999998865311 146888999
Q ss_pred cCCCC--CC---------C-C-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhh
Q 023384 168 GDMFQ--FI---------P-P-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETK 234 (283)
Q Consensus 168 ~d~~~--~~---------p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~ 234 (283)
.|+.+ .+ . + .-++++--+|..++.+++..+|+.+.+...+ |.+++.|.+.++......+....
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d~fg~~M~~~l 245 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGDRFGQIMIENL 245 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTSHHHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCCHHHHHHHHHH
Confidence 99976 11 1 1 4578888899999999999999999998875 77888898866542211010000
Q ss_pred hhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 235 FLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 235 ~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
......+... ....+.++..+.|.++||+.+++..+
T Consensus 246 ~~~g~pl~sl--~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 246 RRRQCDLAGV--ETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HTTTCCCTTG--GGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHhCCCCccc--ccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111111110 12347888899999999998877654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-06 Score=76.69 Aligned_cols=88 Identities=15% Similarity=0.208 Sum_probs=64.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC---C--------------
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF---I-------------- 174 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~-------------- 174 (283)
..+|||+|||+|.++..+++. ..+++++|+ +++++.+++ .++++|+.+|.++- .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 478999999999999988875 358999999 888877654 35899999998761 1
Q ss_pred --CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 175 --PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 175 --p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..||+|++.- +.. .+.+++.+.|++ +|+++.+..
T Consensus 292 ~~~~fD~Vv~dP-----Pr~---g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDP-----PRS---GLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECC-----CTT---CCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECc-----Ccc---ccHHHHHHHHhC---CCEEEEEEC
Confidence 1589998732 211 234456666777 688877763
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.8e-06 Score=69.93 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=54.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-h-------HHHhcCCC-------CCCeEEEEcCCCC--C-C---
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-P-------HVVANLPE-------ADNLKYIAGDMFQ--F-I--- 174 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~rv~~~~~d~~~--~-~--- 174 (283)
.....+|||+|||+|..+..+++. ..+++++|+ + +.++.+++ ..|++++.+|..+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 344579999999999999999986 578999999 7 66666543 3579999999876 2 3
Q ss_pred -CCceEEEecccccC
Q 023384 175 -PPADAFLFKLVFHG 188 (283)
Q Consensus 175 -p~~D~v~~~~vlh~ 188 (283)
..||+|++.-.+++
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 35999999765554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=68.74 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=54.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CC-----CCceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FI-----PPADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~-----p~~D~v~ 181 (283)
.....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|+.+ +. ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5667899999999999999999875 5689999999 777765553 3579999999876 32 2489998
Q ss_pred e
Q 023384 182 F 182 (283)
Q Consensus 182 ~ 182 (283)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.6e-06 Score=74.87 Aligned_cols=91 Identities=10% Similarity=0.045 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C-----------------CCeEEEEcCCCCC--
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----A-----------------DNLKYIAGDMFQF-- 173 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----------------~rv~~~~~d~~~~-- 173 (283)
...+|||+|||+|..++.++++.+..+++++|+ ++.++.+++ . .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 457999999999999999999988889999999 777655443 1 2388999998762
Q ss_pred -CC-CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 174 -IP-PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 174 -~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.+ .||+|++.- .. . ...+|..+.+.|+| ||.+++.
T Consensus 127 ~~~~~fD~I~lDP-~~---~--~~~~l~~a~~~lk~---gG~l~vt 163 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG---S--PMEFLDTALRSAKR---RGILGVT 163 (378)
T ss_dssp HSTTCEEEEEECC-SS---C--CHHHHHHHHHHEEE---EEEEEEE
T ss_pred hccCCCCEEEeCC-CC---C--HHHHHHHHHHhcCC---CCEEEEE
Confidence 23 499999532 11 1 24778999999999 6765554
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-05 Score=74.08 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC------CC-----CeEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFP------------------GIKCTVLDL-PHVVANLPE------AD-----NLKYI 166 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~-----rv~~~ 166 (283)
....+|+|.+||+|.++..+++... ..+++++|+ +.++..|+. .. ++.+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 4457999999999999998876532 247999999 777665542 22 27889
Q ss_pred EcCCCC-C---CCCceEEEecccccCCCh------------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 167 AGDMFQ-F---IPPADAFLFKLVFHGLGD------------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 167 ~~d~~~-~---~p~~D~v~~~~vlh~~~d------------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.+|.+. + .+.||+|++.=.+..... +.-...+.++.+.|+| ||++.++-
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~ 312 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVV 312 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEe
Confidence 999987 3 235999999655443211 1224679999999999 79888775
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.99 E-value=9.9e-06 Score=67.20 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=64.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeech-HHHhcCCC----CCC-eEEEEc-CCCC-CCCCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLP-HVVANLPE----ADN-LKYIAG-DMFQ-FIPPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~r-v~~~~~-d~~~-~~p~~D~v~~~~vlh 187 (283)
+....+|||||||.|.++...++..+-..++++|+. .....+.. ..+ +.+... |+.. +...+|+|++....+
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSDmApn 167 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPGDTLLCDIGES 167 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCcCEEEecCccC
Confidence 667779999999999999998887777778888883 22122211 222 333332 4433 222499999976655
Q ss_pred ----CCChhHHHHHHHHHHHhhccCCCC--cEEEEEeeec
Q 023384 188 ----GLGDEDGLKILKKRRAAIASNGER--GKVIIIDIVI 221 (283)
Q Consensus 188 ----~~~d~~~~~iL~~~~~~L~p~~~g--g~lli~d~~~ 221 (283)
..+......+|+-+.+.|+| | |.+++ -.+.
T Consensus 168 sG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~-KvF~ 203 (282)
T 3gcz_A 168 SPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI-KVLC 203 (282)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE-EESC
T ss_pred CCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE-EEec
Confidence 11112334578888899999 5 65544 4443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.5e-06 Score=73.01 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-------CCC-eEEEEcCCCC--C--CC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-------ADN-LKYIAGDMFQ--F--IP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~r-v~~~~~d~~~--~--~p-~~D~v~ 181 (283)
.+..+|||++||+|.+++.++++.++ .+++.+|+ +..++.+++ .++ ++++.+|.++ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 34579999999999999999998765 57999999 777766654 345 9999999866 2 22 499999
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+.- . .. ...+++.+.+.|+| ||.+++..
T Consensus 131 lDP-~---g~--~~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 131 LDP-F---GT--PVPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp ECC-S---SC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECC-C---cC--HHHHHHHHHHHhCC---CCEEEEEe
Confidence 854 1 11 13578899999999 56554443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0001 Score=63.84 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=61.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCChh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d~ 192 (283)
+..+.++||+||++|.++..++++ +.+++++|..++-......++|+++.+|.++ ..+ .+|++++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 567899999999999999999987 6899999975443333336789999999998 333 499999976653 33
Q ss_pred HHHHHHHHHHHhhc
Q 023384 193 DGLKILKKRRAAIA 206 (283)
Q Consensus 193 ~~~~iL~~~~~~L~ 206 (283)
....++.+......
T Consensus 284 ~~~~l~~~wl~~~~ 297 (375)
T 4auk_A 284 KVAALMAQWLVNGW 297 (375)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HhHHHHHHHHhccc
Confidence 34444444433333
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=3.4e-05 Score=67.12 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------------CCCeEEEEcCCCCCC-------C
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------------ADNLKYIAGDMFQFI-------P 175 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~rv~~~~~d~~~~~-------p 175 (283)
+.++||=||||.|..++++++. |..+++++|+ |.+++.+++ .+|++++.+|..+-+ .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4589999999999999999975 5578999999 888876543 357899999987521 2
Q ss_pred CceEEEecccccCC-C-------hhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 176 PADAFLFKLVFHGL-G-------DEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 176 ~~D~v~~~~vlh~~-~-------d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.||+|+.-..-... + ..-...+++.++++|+| ||.++.
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~ 329 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFT 329 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 49999985321110 1 11235778999999999 565443
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00036 Score=59.52 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeechHHHhcCCC---------CCCeEEEEcCCCCCC----------C-
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQFI----------P- 175 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~----------p- 175 (283)
.+...||+||||-=.....+. .| +++++-+|.|.+++..++ .++..++..|+.+.+ +
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~ 178 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS 178 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence 345789999999877755543 24 488999999998764432 567889999998621 1
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhc-c-ccccc-----c-cCC
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLF-D-IVMSV-----N-ATG 247 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~-~~~ 247 (283)
..-++++-.+||.+++++...+|+.+.+.+.| |..++.|.+.++..... ....... . +.-.. . .+-
T Consensus 179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~l~~~ 252 (310)
T 2uyo_A 179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLHGDEWR--EQMQLRFRRVSDALGFEQAVDVQEL 252 (310)
T ss_dssp SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTTCSHHH--HHHHHHHHHHHC-----------CC
T ss_pred CCEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCCCcchh--HHHHHHHHHHHHHcCCcCCCCcccc
Confidence 13478888999999999999999999999888 55677777665432110 0000000 0 00000 0 111
Q ss_pred cc-CC-HHHHHHHHHHCCCCee
Q 023384 248 KE-RT-ESEWAKLFFDACFSHY 267 (283)
Q Consensus 248 ~~-~t-~~e~~~ll~~aGf~~~ 267 (283)
.. .+ .++..++|.+.||+.+
T Consensus 253 ~~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 253 IYHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCTTCCCHHHHHTTTTEEEE
T ss_pred ccCCCChHHHHHHHHHCcCccc
Confidence 22 25 7889999999999987
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.3e-05 Score=85.67 Aligned_cols=141 Identities=16% Similarity=0.163 Sum_probs=66.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCC-----CeEEEeec-hHHHhcCCCC---CCeEEEEcCCCCC---CC-CceEEEeccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPG-----IKCTVLDL-PHVVANLPEA---DNLKYIAGDMFQF---IP-PADAFLFKLV 185 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~rv~~~~~d~~~~---~p-~~D~v~~~~v 185 (283)
..+||+||+|+|..+..+++.... .+++..|+ +...+.+++. -.++....|..++ .+ .||+|+..++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 468999999999988777766532 36888898 5556666541 1233222233332 22 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
||.-++. ...|+++++.|+| ||.+++.+......-.. ...+.+-. ...+....+.++|.++|+++||.
T Consensus 1321 l~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~~g~-----~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf~ 1388 (2512)
T 2vz8_A 1321 LATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHPLGE-----MVGFLTSP--EQGGRHLLSQDQWESLFAGASLH 1388 (2512)
T ss_dssp -------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTEE
T ss_pred ccccccH--HHHHHHHHHhcCC---CcEEEEEeccccccccc-----cccccccc--cccCCcccCHHHHHHHHHhCCCc
Confidence 9965543 4779999999999 79988877532100000 00000000 00012234678899999999998
Q ss_pred eeeEEE
Q 023384 266 HYKITP 271 (283)
Q Consensus 266 ~~~~~~ 271 (283)
.+.+..
T Consensus 1389 ~~~~~~ 1394 (2512)
T 2vz8_A 1389 LVALKR 1394 (2512)
T ss_dssp EEEEEE
T ss_pred eeeecc
Confidence 876643
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.69 E-value=2.8e-05 Score=64.59 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=53.5
Q ss_pred cCCC--CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHH-------HhcCC----C-C---CCeEEEEcCCCC--C-C
Q 023384 116 FEGL--GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHV-------VANLP----E-A---DNLKYIAGDMFQ--F-I 174 (283)
Q Consensus 116 ~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~----~-~---~rv~~~~~d~~~--~-~ 174 (283)
..+. .+|||++||+|..+..+++. +.+++++|+ +.+ ++.++ . . .|++++.+|..+ + +
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4555 79999999999999999998 568999999 543 33221 1 1 579999999876 2 3
Q ss_pred C-CceEEEecccccC
Q 023384 175 P-PADAFLFKLVFHG 188 (283)
Q Consensus 175 p-~~D~v~~~~vlh~ 188 (283)
+ .||+|++.-.+++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 4999999766654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=67.89 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC---CCeEEEeec-hHHHhcC--CC----------CCCeEEEEcCCCCC----CCCc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFP---GIKCTVLDL-PHVVANL--PE----------ADNLKYIAGDMFQF----IPPA 177 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~----------~~rv~~~~~d~~~~----~p~~ 177 (283)
...+|+|.|||+|.++.++++..+ ..+++++|+ +.+++.| +. .....+...|++.+ ...|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 467999999999999999999886 357999999 7666555 10 12235566677662 2359
Q ss_pred eEEEecccccC-CChh-H-------------------------HHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 178 DAFLFKLVFHG-LGDE-D-------------------------GLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 178 D~v~~~~vlh~-~~d~-~-------------------------~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
|+|++.=..-. +..+ . ...+++++.+.|+| ||++.++-+
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 99999554411 1111 1 23467888999999 788877653
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=60.98 Aligned_cols=97 Identities=14% Similarity=0.180 Sum_probs=62.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechH-HHhcCC--C--C-CCeEEEEc-CCCC-CCCCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPH-VVANLP--E--A-DNLKYIAG-DMFQ-FIPPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~-~~~~a~--~--~-~rv~~~~~-d~~~-~~p~~D~v~~~~vlh 187 (283)
+....+||||||++|.++..+++..+-..++++|+.. ...... + . +-+.+..+ |++. +-..+|+|++...-+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 5677899999999999999999876666778888832 111111 0 1 22334433 5444 223599999865544
Q ss_pred CCC----h-hHHHHHHHHHHHhhccCCCC-cEEEE
Q 023384 188 GLG----D-EDGLKILKKRRAAIASNGER-GKVII 216 (283)
Q Consensus 188 ~~~----d-~~~~~iL~~~~~~L~p~~~g-g~lli 216 (283)
-. | .....+|+-+.+.|+| | |.+++
T Consensus 159 -sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~ 189 (300)
T 3eld_A 159 -SSNPLVERDRTMKVLENFERWKHV---NTENFCV 189 (300)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence 11 2 1235668888899999 6 76555
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.59 E-value=2.9e-05 Score=68.60 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----C----CCeEEEEcCCCCC--C---CCceEEEe
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----A----DNLKYIAGDMFQF--I---PPADAFLF 182 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~rv~~~~~d~~~~--~---p~~D~v~~ 182 (283)
....+|||+|||+|..+..+++. ..+++++|+ +.+++.+++ . ++++++.+|+++. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 33689999999999999998887 469999999 777776653 1 4799999999873 2 25999998
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.58 E-value=5.4e-05 Score=69.63 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=67.5
Q ss_pred CeEEEEcCCccHHHHHHHHHCC---------------CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C-C
Q 023384 120 GSLVDVGGGNGSLSRIISEAFP---------------GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F-I 174 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~-~ 174 (283)
.+|+|.+||+|.++..+++..+ ..+++++|+ +.++..|+. ..++.+..+|.+. + .
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 4999999999999998765432 567999999 777666542 2344458889887 4 2
Q ss_pred C--CceEEEeccccc--CCChh-------------------------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 175 P--PADAFLFKLVFH--GLGDE-------------------------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 175 p--~~D~v~~~~vlh--~~~d~-------------------------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+ .||+|++.=.+. .|..+ .-...++++.+.|+| ||++.++-
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVl 395 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLL 395 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEe
Confidence 2 499999954333 23211 112578999999999 79887764
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00013 Score=60.75 Aligned_cols=74 Identities=23% Similarity=0.207 Sum_probs=57.4
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-C--C---
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-F--I--- 174 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~--~--- 174 (283)
.+.+++ .+. ......+||.+||.|..+..++++ +.+++++|. |.+++.+++ .+|+.++.+||.+ + +
T Consensus 11 l~e~le-~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~ 85 (285)
T 1wg8_A 11 YQEALD-LLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 85 (285)
T ss_dssp HHHHHH-HHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHH-hhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence 455666 665 667789999999999999999998 789999999 877755432 2689999998876 2 1
Q ss_pred --CCceEEEe
Q 023384 175 --PPADAFLF 182 (283)
Q Consensus 175 --p~~D~v~~ 182 (283)
..+|.|++
T Consensus 86 g~~~vDgIL~ 95 (285)
T 1wg8_A 86 GVERVDGILA 95 (285)
T ss_dssp TCSCEEEEEE
T ss_pred CCCCcCEEEe
Confidence 24777776
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00057 Score=54.34 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCCC-------------
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQF------------- 173 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~~------------- 173 (283)
.+..+|||||+| ..++.+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 345899999984 55555555 46789999998 666555442 35799999995431
Q ss_pred -----------C---CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 174 -----------I---PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 174 -----------~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
. ..||+|++-.-. ....+..+.+.|+| |.++|+|.+...
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~----GG~Iv~DNv~~r 158 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITR----PVTLLFDDYSQR 158 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSS----CEEEEETTGGGC
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCC----CeEEEEeCCcCC
Confidence 1 249999995521 12445557788999 455577765433
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0004 Score=63.79 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHC---CCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC-CCC-----CceE
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAF---PGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ-FIP-----PADA 179 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~-~~p-----~~D~ 179 (283)
...+|+|.+||+|.++..+++.. +..+++++|+ +.+...++. .+++.+..+|.+. +.| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999998885 3678999999 776665542 2467899999987 322 4999
Q ss_pred EEeccccc-CCChh--------------------HHHHHHHHHHHhhc-cCCCCcEEEEEe
Q 023384 180 FLFKLVFH-GLGDE--------------------DGLKILKKRRAAIA-SNGERGKVIIID 218 (283)
Q Consensus 180 v~~~~vlh-~~~d~--------------------~~~~iL~~~~~~L~-p~~~gg~lli~d 218 (283)
|++.=.+. .|..+ .-...+.++.+.|+ | ||++.++-
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVL 358 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEe
Confidence 99752221 12100 01247899999999 8 79887765
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00035 Score=57.09 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=59.2
Q ss_pred hcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHH--HhcCCC-CCCe---EEEEc-CCCCCCC-CceEEEecccc
Q 023384 115 IFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHV--VANLPE-ADNL---KYIAG-DMFQFIP-PADAFLFKLVF 186 (283)
Q Consensus 115 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~--~~~a~~-~~rv---~~~~~-d~~~~~p-~~D~v~~~~vl 186 (283)
.++...+|||+||+.|.++...++.-+-..+.+.++... +..... ...+ .|.++ ||++..+ .+|+|++-..=
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~DvVLSDMAP 149 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIGE 149 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCCCEEEeCCCC
Confidence 377889999999999999998887521112233333111 111111 1345 45557 9998333 59999984321
Q ss_pred c--CC-ChhH-HHHHHHHHHHhhccCCCCc-EEEEEeeecC
Q 023384 187 H--GL-GDED-GLKILKKRRAAIASNGERG-KVIIIDIVIN 222 (283)
Q Consensus 187 h--~~-~d~~-~~~iL~~~~~~L~p~~~gg-~lli~d~~~~ 222 (283)
. ++ .|.. ...+|.-+.+.|+| || .+++ -.+.+
T Consensus 150 nSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv-KVFqg 186 (269)
T 2px2_A 150 SSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI-KILCP 186 (269)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESCT
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE-EECCC
Confidence 1 11 1211 22357667789999 56 5444 44443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00081 Score=54.19 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=66.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC--C---CCCeEEEEc-CCCC-CCCCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP--E---ADNLKYIAG-DMFQ-FIPPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--~---~~rv~~~~~-d~~~-~~p~~D~v~~~~vlh 187 (283)
+....+||||||++|.++...+....-.+++++|+ +.-.+.-. + -..|+|..+ |++. +...+|.+++--.=-
T Consensus 76 l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~DtllcDIgeS 155 (267)
T 3p8z_A 76 VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDIGES 155 (267)
T ss_dssp SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccccEEEEecCCC
Confidence 66677999999999999998887766668999998 32222111 1 467899999 9776 333499998833211
Q ss_pred CCC---hh-HHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 188 GLG---DE-DGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 188 ~~~---d~-~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.=+ |+ ...++|+-+.+.|++ |.+++ -.+.|..
T Consensus 156 s~~~~vE~~RtlrvLela~~wL~~----~~fc~-KVl~py~ 191 (267)
T 3p8z_A 156 SPSPTVEESRTIRVLKMVEPWLKN----NQFCI-KVLNPYM 191 (267)
T ss_dssp CSCHHHHHHHHHHHHHHHGGGCSS----CEEEE-EESCCCS
T ss_pred CCChhhhhhHHHHHHHHHHHhccc----CCEEE-EEccCCC
Confidence 111 11 224466666788887 44444 4444443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0018 Score=54.28 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=67.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC-----CCCeEEEeec-hH--------------------------HHhcCCC-----
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF-----PGIKCTVLDL-PH--------------------------VVANLPE----- 159 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~~----- 159 (283)
....+||++|+..|..++.+++.. |+.+++++|. .. .++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 345799999999999999887765 5788999994 11 0111111
Q ss_pred ---CCCeEEEEcCCCC--C-CC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 160 ---ADNLKYIAGDMFQ--F-IP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 160 ---~~rv~~~~~d~~~--~-~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
.++|+++.||+.+ + .+ .+|++++-.- + -+.....|+.+.+.|+| |.++|+|..
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~-y~~~~~~Le~~~p~L~p----GGiIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---L-YESTWDTLTNLYPKVSV----GGYVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---S-HHHHHHHHHHHGGGEEE----EEEEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---c-cccHHHHHHHHHhhcCC----CEEEEEcCC
Confidence 3789999999977 2 32 4899888542 1 13346789999999999 667777754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.016 Score=54.93 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=101.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCC--------CCeEEEeechHHHhcCCC------------------------------
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFP--------GIKCTVLDLPHVVANLPE------------------------------ 159 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 159 (283)
+...||-+|||.=.....+...+| +++++-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 457899999999999998887755 778899999988643211
Q ss_pred CCCeEEEEcCCCCC--C-----------CC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCc
Q 023384 160 ADNLKYIAGDMFQF--I-----------PP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEE 225 (283)
Q Consensus 160 ~~rv~~~~~d~~~~--~-----------p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~ 225 (283)
.++..++..|+.+. + ++ .-++++--+|..++.+++.++|+.+.+ + | ++.+++.|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 14889999999872 1 22 346777889999999999999999885 4 5 488888898877532
Q ss_pred cchhhhhhhhhcccccccc---cCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 226 EEHELTETKFLFDIVMSVN---ATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
..+ +... ....+..... .-....+.++..+.|.+.||+.+.....
T Consensus 262 ~d~-f~~~-m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 262 FEP-FSKQ-MLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TSH-HHHH-HHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCh-HHHH-HHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 221 1110 0001110000 0113447999999999999987766543
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0049 Score=51.36 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=65.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhc---CCC--CCCeEEEEc-CCCC-CCCCceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVAN---LPE--ADNLKYIAG-DMFQ-FIPPADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~--~~rv~~~~~-d~~~-~~p~~D~v~~~~vlh 187 (283)
+....+||||||++|.++...+....-.+++++|+ ..--+. .++ -.-|.+..+ |++. +...+|++++--. -
T Consensus 92 l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ivcDig-e 170 (321)
T 3lkz_A 92 LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIG-E 170 (321)
T ss_dssp CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCSEEEECCC-C
T ss_pred CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCCEEEEECc-c
Confidence 56667999999999999997777765557999998 331111 111 134888888 8776 3345899887443 2
Q ss_pred CCCh----h-HHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 188 GLGD----E-DGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 188 ~~~d----~-~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
--+. + ...++|.-+.+.|++ +| |-++| -.+.|
T Consensus 171 Ss~~~~ve~~Rtl~vLel~~~wL~~-~~-~~f~~-KVl~p 207 (321)
T 3lkz_A 171 SSSSAEVEEHRTIRVLEMVEDWLHR-GP-REFCV-KVLCP 207 (321)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTT-CC-CEEEE-EESCT
T ss_pred CCCChhhhhhHHHHHHHHHHHHhcc-CC-CcEEE-EEcCC
Confidence 1121 1 224467777888988 22 55444 44444
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0087 Score=50.54 Aligned_cols=120 Identities=20% Similarity=0.189 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCccHHHHHH----HHHCCCCe--EEEeec-h--------HHH--------hcCCC--CCCe--EEEEcCC
Q 023384 118 GLGSLVDVGGGNGSLSRII----SEAFPGIK--CTVLDL-P--------HVV--------ANLPE--ADNL--KYIAGDM 170 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l----~~~~p~~~--~~~~D~-~--------~~~--------~~a~~--~~rv--~~~~~d~ 170 (283)
..-+|+|+|=|+|...... .+..|+.+ ++.++. | +.. ..... ..++ .+.-||.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 3468999999999876543 34577765 455553 1 000 00000 3444 4677887
Q ss_pred CCC---CC--CceEEEecccccCCChh-HHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 171 FQF---IP--PADAFLFKLVFHGLGDE-DGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 171 ~~~---~p--~~D~v~~~~vlh~~~d~-~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
.+. ++ .+|++++-..=-.-.++ -...+++++++.++| ||.+.-..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt-------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS-------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC--------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe--------------------------
Confidence 662 33 38998884321111111 124789999999999 56543110
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
....+++-|++|||++.++...
T Consensus 227 ------aag~VRR~L~~aGF~V~k~~G~ 248 (308)
T 3vyw_A 227 ------SSLSVRKSLLTLGFKVGSSREI 248 (308)
T ss_dssp ------CCHHHHHHHHHTTCEEEEEECC
T ss_pred ------CcHHHHHHHHHCCCEEEecCCC
Confidence 1346788999999997766443
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0035 Score=53.50 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=53.3
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ 172 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~ 172 (283)
.+.+++ .+. ......+||..+|.|..+.+++++. |+.+++++|. |.+++.++. .+|++++.++|.+
T Consensus 46 l~Evl~-~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 46 LDEAVN-GLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp THHHHH-HTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHHH-hhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456666 555 5667899999999999999999985 8899999999 888887643 5678888877665
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.017 Score=48.18 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=59.3
Q ss_pred cCCCCeEEEEcC------CccHHHHHHHHHCCC-CeEEEeechHHHhcCCCCCCeEEEEcCCCC-CC-CCceEEEeccc-
Q 023384 116 FEGLGSLVDVGG------GNGSLSRIISEAFPG-IKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FI-PPADAFLFKLV- 185 (283)
Q Consensus 116 ~~~~~~vlDvGg------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~-p~~D~v~~~~v- 185 (283)
.+...+|||+|+ ..|.+ .+.+..|. ..++..|+.+....+ . .++.||+.+ .. ..+|+|++-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 456689999996 66773 44556786 689999995544322 1 459999876 33 35999987221
Q ss_pred ------ccCC--ChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 186 ------FHGL--GDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 186 ------lh~~--~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
-++- ...-+..+|.=+.+.|+| ||.+++
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvV 215 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAV 215 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEE
Confidence 1111 122356667778889999 676655
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.014 Score=50.61 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=73.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC------------CCCCeEEEEcCCCC-C--CC-Cce
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP------------EADNLKYIAGDMFQ-F--IP-PAD 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~rv~~~~~d~~~-~--~p-~~D 178 (283)
...+.+|||+-+|.|.=+..+++..++..++..|+ +.-+...+ ...++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56678999999999999999999887778899998 54433221 13578888888776 2 23 499
Q ss_pred EEEecc--------c-------ccCCChhHH-------HHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 179 AFLFKL--------V-------FHGLGDEDG-------LKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 179 ~v~~~~--------v-------lh~~~d~~~-------~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.|++-- + ...|..++. .+||+++.+.||| ||+|+-....+..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCch
Confidence 998721 1 122222221 4789999999999 7877666554443
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.008 Score=51.96 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEEcCCCC
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP---EADNLKYIAGDMFQ 172 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~rv~~~~~d~~~ 172 (283)
...|||||.|.|.++..|+++...-+++++++ +..+...+ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 47899999999999999998754457888887 44433222 25789999999976
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.041 Score=50.36 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC-------------CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CC-
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF-------------PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FI- 174 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~- 174 (283)
....+|+|-.||+|.++....+.. ....+.++|+ +.+...++- .+.-.+..+|.+. +.
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~ 295 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLR 295 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGG
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchh
Confidence 445689999999999998766532 1356899998 666554442 2344667888776 32
Q ss_pred -----CCceEEEecccccC-CC-------------hhHHHHHHHHHHHhhc-------cCCCCcEEEEEee
Q 023384 175 -----PPADAFLFKLVFHG-LG-------------DEDGLKILKKRRAAIA-------SNGERGKVIIIDI 219 (283)
Q Consensus 175 -----p~~D~v~~~~vlh~-~~-------------d~~~~~iL~~~~~~L~-------p~~~gg~lli~d~ 219 (283)
..||+|+..=.+-. +. .+.....+..+.+.|+ | ||++.++-+
T Consensus 296 ~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avVlP 363 (530)
T 3ufb_A 296 EMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVVVP 363 (530)
T ss_dssp GCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEEEE
T ss_pred hhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEEec
Confidence 14999998655421 11 1122345777888886 5 788877653
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.026 Score=47.53 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=33.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE 159 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 159 (283)
.....|||++||+|..+.+.++. +.+++++|+ +..++.+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 45679999999999999998876 568999999 777766653
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.21 Score=40.96 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCeEEEEcCCccHHHHHHHHH-------CCCCeEEEeec----hHH------------------------Hh-------c
Q 023384 119 LGSLVDVGGGNGSLSRIISEA-------FPGIKCTVLDL----PHV------------------------VA-------N 156 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~-------~ 156 (283)
...|+|+|+-.|..+..++.. .++-++.++|. |+. ++ .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 479999999999988886642 46778999993 221 00 0
Q ss_pred CCC----CCCeEEEEcCCCCCC-------C--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 157 LPE----ADNLKYIAGDMFQFI-------P--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 157 a~~----~~rv~~~~~d~~~~~-------p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
.+. .++|+++.|++.+.+ | .+|++++-. ++ -+.....|+.+...|+| |.++++|..
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~-Y~~t~~~le~~~p~l~~----GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DL-YEPTKAVLEAIRPYLTK----GSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CC-HHHHHHHHHHHGGGEEE----EEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---cc-cchHHHHHHHHHHHhCC----CcEEEEcCC
Confidence 011 378999999997721 3 378888754 22 13356779999999999 666676643
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.58 Score=40.70 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=63.7
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeE-EEeec-hHHHhcCCC-CCCeEEEEcCCCC-C---C-------CCceEEEeccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKC-TVLDL-PHVVANLPE-ADNLKYIAGDMFQ-F---I-------PPADAFLFKLV 185 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~---~-------p~~D~v~~~~v 185 (283)
.+++|+=||.|.++..+.++ +.++ ..+|+ +..++..+. -....++.+|+.+ . + +.+|+++..--
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 58999999999999999988 4554 58888 555544332 3456778888876 2 2 35899998776
Q ss_pred ccCCC-------hhHHHHHHH---HHHHhhccCCCCcEEEEEeeecC
Q 023384 186 FHGLG-------DEDGLKILK---KRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 186 lh~~~-------d~~~~~iL~---~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
...|+ ++..-.++. ++.+.++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchH
Confidence 66665 111223333 44455676 6788887653
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.39 Score=41.20 Aligned_cols=124 Identities=10% Similarity=0.061 Sum_probs=72.7
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCC-eEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-C---CC--CceEEEecccccCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGI-KCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-F---IP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~---~p--~~D~v~~~~vlh~~~ 190 (283)
.+|+|+-||.|.++..+.++.-.. .+..+|+ +..++..+. .....++.+|+.+ . ++ .+|+++..--...|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 579999999999999999884323 3678888 665554443 3344577888876 2 23 589999976655554
Q ss_pred hh--------HHHHHHHHHHHhhccCCCC--cEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHH
Q 023384 191 DE--------DGLKILKKRRAAIASNGER--GKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 260 (283)
Q Consensus 191 d~--------~~~~iL~~~~~~L~p~~~g--g~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 260 (283)
.. ..-.++..+.+.++.. . -+++++|.+..=. .+ .+.+.+.+.|+
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l~---------------------~~--~~~~~i~~~l~ 137 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGFE---------------------VS--STRDLLIQTIE 137 (343)
T ss_dssp -------------CHHHHHHHHGGGC--SSCCSEEEEEEETTGG---------------------GS--HHHHHHHHHHH
T ss_pred hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCcccc---------------------CH--HHHHHHHHHHH
Confidence 21 1112444444443320 1 2567777655210 00 13567888889
Q ss_pred HCCCCeee
Q 023384 261 DACFSHYK 268 (283)
Q Consensus 261 ~aGf~~~~ 268 (283)
+.|+.+..
T Consensus 138 ~~GY~v~~ 145 (343)
T 1g55_A 138 NCGFQYQE 145 (343)
T ss_dssp HTTEEEEE
T ss_pred HCCCeeEE
Confidence 99987653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=91.95 E-value=0.97 Score=38.45 Aligned_cols=121 Identities=14% Similarity=0.095 Sum_probs=74.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEEcCCCC----CCCCceEEEecccccCCC-
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPE-ADNLKYIAGDMFQ----FIPPADAFLFKLVFHGLG- 190 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~----~~p~~D~v~~~~vlh~~~- 190 (283)
..+++|+-||.|.++..+.++ +.+ +..+|+ +..++..+. ..... .+|+.+ .++.+|+++..--...|+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ 86 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHcCHhhCCCCCEEEECCCCCCcch
Confidence 368999999999999999887 455 456788 555443332 01111 567765 245689999876655554
Q ss_pred --------hhH--HHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHH
Q 023384 191 --------DED--GLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 260 (283)
Q Consensus 191 --------d~~--~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 260 (283)
|+. ...-+-++.+.++| +++++|.+..-... .+..+.+.+.+.|+
T Consensus 87 ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~gl~~~--------------------~~~~~~~~i~~~l~ 141 (327)
T 2c7p_A 87 SGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKNFASH--------------------DNGNTLEVVKNTMN 141 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGGGGTG--------------------GGGHHHHHHHHHHH
T ss_pred hcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHHHHhc--------------------cccHHHHHHHHHHH
Confidence 211 12223334455677 67888876531100 11124577888899
Q ss_pred HCCCCeee
Q 023384 261 DACFSHYK 268 (283)
Q Consensus 261 ~aGf~~~~ 268 (283)
+.|+.+..
T Consensus 142 ~~GY~v~~ 149 (327)
T 2c7p_A 142 ELDYSFHA 149 (327)
T ss_dssp HTTBCCEE
T ss_pred hCCCEEEE
Confidence 99987653
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=91.74 E-value=0.48 Score=39.33 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=71.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC--C--CC---CceEEEecccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ--F--IP---PADAFLFKLVF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~--~--~p---~~D~v~~~~vl 186 (283)
...+||+=+|||.++++.++ +.-+++.+|+ +..++..++ .++++++..|.++ . .| .+|+|++-=..
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 46789999999999999988 4578999999 776655444 5789999999765 1 12 49999995444
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
.. .++..++++.+.+..+- .++|.++|.=++....
T Consensus 170 e~--k~~~~~vl~~L~~~~~r-~~~Gi~v~WYPi~~~~ 204 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSK-FSTGLYCVWYPVVNKA 204 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHH-CTTSEEEEEEEESSHH
T ss_pred CC--CcHHHHHHHHHHHhCcc-CCCeEEEEEEeccchH
Confidence 32 22455667766665432 1268888887776543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=90.35 E-value=0.53 Score=41.06 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHC-------CCCeEEEeechHHH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAF-------PGIKCTVLDLPHVV 154 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~-------p~~~~~~~D~~~~~ 154 (283)
..-.|+|+|+|+|.++..+++.. ..++++.++.++.+
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 34579999999999999888653 34689999985443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=0.95 Score=38.23 Aligned_cols=83 Identities=14% Similarity=0.060 Sum_probs=52.0
Q ss_pred CeEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEecccccCCChhHHH
Q 023384 120 GSLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 120 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
.+|.=||+|. +.++..+++.....+++++|. ++.++.+.+..-+.-...|..+ ....+|+|+++- +.....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~~ 108 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR 108 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHHH
Confidence 6899998763 334444555433338999998 6666655432222122334433 344689999854 455667
Q ss_pred HHHHHHHHhhcc
Q 023384 196 KILKKRRAAIAS 207 (283)
Q Consensus 196 ~iL~~~~~~L~p 207 (283)
.+++++.+.++|
T Consensus 109 ~vl~~l~~~l~~ 120 (314)
T 3ggo_A 109 EIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHhhccCC
Confidence 889999999998
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.91 Score=42.65 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=54.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHC-------CC-----CeEEEeec----hHHHhc-CC-----------------C-----
Q 023384 119 LGSLVDVGGGNGSLSRIISEAF-------PG-----IKCTVLDL----PHVVAN-LP-----------------E----- 159 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~-------p~-----~~~~~~D~----~~~~~~-a~-----------------~----- 159 (283)
.-+|+|+|-|+|......++.+ |+ ++++.++. ++.+.. .. .
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 3589999999999888876653 32 55788875 223321 00 0
Q ss_pred ------C--CCeEEEEcCCCC--C-C-----CCceEEEecccccCCChh-HHHHHHHHHHHhhccCCCCcEE
Q 023384 160 ------A--DNLKYIAGDMFQ--F-I-----PPADAFLFKLVFHGLGDE-DGLKILKKRRAAIASNGERGKV 214 (283)
Q Consensus 160 ------~--~rv~~~~~d~~~--~-~-----p~~D~v~~~~vlh~~~d~-~~~~iL~~~~~~L~p~~~gg~l 214 (283)
. -++++.-||..+ + + ..+|++++--.--.-+++ -...+++.+++.++| ||.+
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~---g~~~ 215 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTL 215 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE---EEEE
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC---CCEE
Confidence 1 223456677655 1 2 238998874321111111 134789999999999 5654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=89.36 E-value=1.9 Score=33.51 Aligned_cols=95 Identities=11% Similarity=0.161 Sum_probs=59.8
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC----CCCceEEEecccccCCChhH
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF----IPPADAFLFKLVFHGLGDED 193 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~----~p~~D~v~~~~vlh~~~d~~ 193 (283)
+||=.| |+|..+..+++.+ .+.++++++. ++...... .+++++.+|+.++ +.+.|+++.......-..+.
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 78 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEK 78 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTS
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCccccch
Confidence 456554 5666666655543 3578888888 55444332 6789999999873 23578888765443222333
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 194 GLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 194 ~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.....+++.++++..+ .++++++..
T Consensus 79 ~~~~~~~l~~a~~~~~-~~~~v~~SS 103 (221)
T 3ew7_A 79 HVTSLDHLISVLNGTV-SPRLLVVGG 103 (221)
T ss_dssp HHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred HHHHHHHHHHHHHhcC-CceEEEEec
Confidence 4566778888887622 467777654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=0.63 Score=43.86 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHC-------CC-----CeEEEeec-h---HHHhcCC---------------C-------
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAF-------PG-----IKCTVLDL-P---HVVANLP---------------E------- 159 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~---------------~------- 159 (283)
..-+|+|+|-|+|.......+.+ |+ ++++.++. | +.+..+- .
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34689999999999988877653 32 56788875 3 2222100 0
Q ss_pred -------CC--CeEEEEcCCCC--C-C-----CCceEEEecccccCC-ChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 160 -------AD--NLKYIAGDMFQ--F-I-----PPADAFLFKLVFHGL-GDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 160 -------~~--rv~~~~~d~~~--~-~-----p~~D~v~~~~vlh~~-~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.. ++++.-||..+ + + ..+|++++--.--.- ++--...+++.+.+.++| |+.+.-..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~--- 211 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFSTFT--- 211 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEEESC---
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEEecc---
Confidence 12 44567788865 2 2 238988873321100 110124778999999998 56532100
Q ss_pred CCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 222 NAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
.....++.|.++||.+.++.
T Consensus 212 -----------------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 -----------------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp -----------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred -----------------------------CcHHHHHHHHhCCeEEEecc
Confidence 12457788899999876654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=88.61 E-value=0.69 Score=40.70 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCCccHHHHHHH-HHCCC-CeEEEeec-hHHHhc
Q 023384 117 EGLGSLVDVGGGNGSLSRIIS-EAFPG-IKCTVLDL-PHVVAN 156 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~ 156 (283)
++...|+|||++.|.++..++ +..++ .+++.++. |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 566899999999999999988 66765 79999998 765543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.43 E-value=0.45 Score=39.01 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP 158 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 158 (283)
.....|||..||+|..+.+..+. +.+++++|+ +..++.++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 45679999999999999988776 678999999 76665543
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=87.68 E-value=2.2 Score=36.18 Aligned_cols=124 Identities=10% Similarity=0.046 Sum_probs=76.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCe-E-EEeec-hHHHhcCCC--CCCeEEEEcCCCC-C---CC--CceEEEeccccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIK-C-TVLDL-PHVVANLPE--ADNLKYIAGDMFQ-F---IP--PADAFLFKLVFH 187 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~---~p--~~D~v~~~~vlh 187 (283)
..+++|+-||.|.++..+.++.-..+ + ..+|+ +..++..+. ... ++.+|+.+ . ++ .+|+++..--..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 45899999999999999988742234 4 58898 555443332 122 56677776 2 23 489999877666
Q ss_pred CC-----------ChhHHHHHHHHHHH-hhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 188 GL-----------GDEDGLKILKKRRA-AIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 188 ~~-----------~d~~~~~iL~~~~~-~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
.| .|+ .-.++..+.+ .++....--+++++|.+..=. .+ .+.+.+
T Consensus 88 ~fs~S~ag~~~~~~d~-r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~---------------------~~--~~~~~i 143 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDP-RAKSVLHLYRDILPYLINKPKHIFIENVPLFK---------------------ES--LVFKEI 143 (327)
T ss_dssp TCSHHHHTTTCTTTCG-GGHHHHHHHHTTGGGCSSCCSEEEEEECGGGG---------------------GS--HHHHHH
T ss_pred CcccccCCCCCCCccc-cchhHHHHHHHHHHHhccCCCEEEEEchhhhc---------------------Ch--HHHHHH
Confidence 66 222 2245555555 443200003678888665210 01 245788
Q ss_pred HHHHHHCCCCeee
Q 023384 256 AKLFFDACFSHYK 268 (283)
Q Consensus 256 ~~ll~~aGf~~~~ 268 (283)
.+.|++.|+.+..
T Consensus 144 ~~~l~~~GY~v~~ 156 (327)
T 3qv2_A 144 YNILIKNQYYIKD 156 (327)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHhCCCEEEE
Confidence 8889999997654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=87.35 E-value=2 Score=35.52 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=50.1
Q ss_pred CeEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 120 GSLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 120 ~~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
.+|.=||+|. +.++..+++..+..++++.|. ++..+.+.+.........|..+...++|+|++.- ++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHHH
Confidence 5788898875 233444555545678999998 6655543321111112233333334589998854 5555677
Q ss_pred HHHHHHHh-hcc
Q 023384 197 ILKKRRAA-IAS 207 (283)
Q Consensus 197 iL~~~~~~-L~p 207 (283)
+++.+.+. +++
T Consensus 82 v~~~l~~~~l~~ 93 (290)
T 3b1f_A 82 FIKILADLDLKE 93 (290)
T ss_dssp HHHHHHTSCCCT
T ss_pred HHHHHHhcCCCC
Confidence 88888888 887
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=85.06 E-value=2 Score=36.63 Aligned_cols=120 Identities=11% Similarity=0.096 Sum_probs=74.0
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCe-EEEeec-hHHHhcCCC-CCCeEEEEcCCCC-C---CC--CceEEEecccccCCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIK-CTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-F---IP--PADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~---~p--~~D~v~~~~vlh~~~ 190 (283)
-+++|+=||.|.++..+.++.-..+ +..+|+ +...+..+. -....+..+|+.+ . ++ .+|+++...-...|+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS 83 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT 83 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence 4799999999999999998843334 457888 554433322 2234466778766 2 33 489998866555553
Q ss_pred ---------hhHHHHHHHHHHHh---hc-cCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 191 ---------DEDGLKILKKRRAA---IA-SNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 191 ---------d~~~~~iL~~~~~~---L~-p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
|+ .-.++..+.+. ++ | +++++|.+..-.. + .+.+.+.+
T Consensus 84 ~ag~~~~~~d~-r~~L~~~~~r~i~~~~~P-----~~~vlENV~gl~~---------------------~--~~~~~i~~ 134 (333)
T 4h0n_A 84 RNGKYLDDNDP-RTNSFLYLIGILDQLDNV-----DYILMENVKGFEN---------------------S--TVRNLFID 134 (333)
T ss_dssp ETTEECCTTCT-TSCCHHHHHHHGGGCTTC-----CEEEEEECTTGGG---------------------S--HHHHHHHH
T ss_pred hhhhccCCcCc-ccccHHHHHHHHHHhcCC-----CEEEEecchhhhh---------------------h--hHHHHHHH
Confidence 21 11233344444 44 5 6788886653110 0 12467888
Q ss_pred HHHHCCCCeee
Q 023384 258 LFFDACFSHYK 268 (283)
Q Consensus 258 ll~~aGf~~~~ 268 (283)
.|++.|+.+..
T Consensus 135 ~l~~~GY~v~~ 145 (333)
T 4h0n_A 135 KLKECNFIYQE 145 (333)
T ss_dssp HHHHTTEEEEE
T ss_pred HHHhCCCeEEE
Confidence 99999987654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=84.68 E-value=6.8 Score=30.42 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=60.6
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC----CCCceEEEeccccc--CCCh
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF----IPPADAFLFKLVFH--GLGD 191 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~----~p~~D~v~~~~vlh--~~~d 191 (283)
+||=.| |+|..+..+++++ .+.++++++. ++...... ..+++++.+|+.++ +.+.|+++...... ....
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~ 79 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL-GATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRG 79 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT-CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCT
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEeccccccccc-CCCceEEecccccccHhhcccCCEEEECCccCCCcchh
Confidence 455554 5677666666544 3568888888 54444322 36799999999873 23578887765442 1122
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.......+++.++++. . |++++++..
T Consensus 80 ~~n~~~~~~l~~a~~~-~-~~~~v~~SS 105 (224)
T 3h2s_A 80 YLHLDFATHLVSLLRN-S-DTLAVFILG 105 (224)
T ss_dssp HHHHHHHHHHHHTCTT-C-CCEEEEECC
T ss_pred hHHHHHHHHHHHHHHH-c-CCcEEEEec
Confidence 3456677888888887 2 577777753
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=84.31 E-value=3.5 Score=34.86 Aligned_cols=92 Identities=13% Similarity=0.151 Sum_probs=58.7
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC---CC----CCceEEEecccc
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ---FI----PPADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~---~~----p~~D~v~~~~vl 186 (283)
.....+||-+|+|. |..+..+++.. +.++++.|. ++..+.+++..--.++..+-.+ .+ +.+|+++....
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g- 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAV- 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCC-
Confidence 56678899999764 88999999886 559999998 6666655541111122211111 01 24788776432
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
. ...++.+.+.|+| +|+++++..
T Consensus 242 ----~---~~~~~~~~~~l~~---~G~iv~~G~ 264 (340)
T 3s2e_A 242 ----S---PKAFSQAIGMVRR---GGTIALNGL 264 (340)
T ss_dssp ----C---HHHHHHHHHHEEE---EEEEEECSC
T ss_pred ----C---HHHHHHHHHHhcc---CCEEEEeCC
Confidence 1 2457888899999 799887653
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=83.96 E-value=9.2 Score=30.98 Aligned_cols=94 Identities=17% Similarity=0.122 Sum_probs=58.1
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEecccccCCChhHHH
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDEDGL 195 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~ 195 (283)
.+||=.| + |..+..+++++ .+.++++++. +....... ..+++++.+|+.+ .+.+.|+|+.........+....
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~ 82 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLA 82 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHH
T ss_pred CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh-hCCCeEEEecccccccCCCCEEEECCCccccccHHHH
Confidence 5899998 4 88888877765 2467888887 43332221 2578999999887 44468988876655444444444
Q ss_pred HHHHHHHHhhccCCCCcEEEEEee
Q 023384 196 KILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 196 ~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.+++.+.+.-.. -.+++.+..
T Consensus 83 ~l~~a~~~~~~~---~~~~v~~Ss 103 (286)
T 3ius_A 83 ALGDQIAARAAQ---FRWVGYLST 103 (286)
T ss_dssp HHHHHHHHTGGG---CSEEEEEEE
T ss_pred HHHHHHHhhcCC---ceEEEEeec
Confidence 455544443121 256666553
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=83.00 E-value=6 Score=28.05 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=47.2
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGL 189 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~ 189 (283)
.+|+=+|+ |..+..+++.+ .+.+++++|. ++.++...+...+.++.+|..++ ...+|+++..-
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~----- 77 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT----- 77 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee-----
Confidence 57888877 45554444332 3568999998 65555443222466777877541 33589888763
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 023384 190 GDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p 207 (283)
++++....+..+.+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~ 95 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGI 95 (140)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHHHcCC
Confidence 223333344455566776
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=82.57 E-value=5.8 Score=28.49 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=47.1
Q ss_pred CeEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCC
Q 023384 120 GSLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGL 189 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~ 189 (283)
.+|+=+|+| ..+..+++.+ -+.+++++|. ++.++.+++ ..+.++.+|..++ ...+|+++..--
T Consensus 7 ~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~---- 79 (141)
T 3llv_A 7 YEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLITGS---- 79 (141)
T ss_dssp CSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEECCS----
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEecC----
Confidence 578889885 4555444433 2568999998 666655543 3577888998873 235888877442
Q ss_pred ChhHHHHHHHHHHH
Q 023384 190 GDEDGLKILKKRRA 203 (283)
Q Consensus 190 ~d~~~~~iL~~~~~ 203 (283)
+++....+...+++
T Consensus 80 ~~~~n~~~~~~a~~ 93 (141)
T 3llv_A 80 DDEFNLKILKALRS 93 (141)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 34444444444333
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=81.82 E-value=4.6 Score=34.73 Aligned_cols=94 Identities=9% Similarity=0.082 Sum_probs=59.4
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcC-----CCCC----CC-CceEEEec
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGD-----MFQF----IP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d-----~~~~----~p-~~D~v~~~ 183 (283)
.....+||-+|+| .|.++..+++..-..+++++|. ++.++.+++..--.++... +.+. .+ .+|+++-.
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~ 270 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFEC 270 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEEC
Confidence 5567889999876 4888888888764448999996 7666666552111122211 1110 01 48888764
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCC-cEEEEEeee
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGER-GKVIIIDIV 220 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~g-g~lli~d~~ 220 (283)
.- . ...++...++|++ | |+++++-..
T Consensus 271 ~g-----~---~~~~~~~~~~l~~---g~G~iv~~G~~ 297 (378)
T 3uko_A 271 IG-----N---VSVMRAALECCHK---GWGTSVIVGVA 297 (378)
T ss_dssp SC-----C---HHHHHHHHHTBCT---TTCEEEECSCC
T ss_pred CC-----C---HHHHHHHHHHhhc---cCCEEEEEccc
Confidence 32 2 2457888899998 6 898887653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.19 E-value=4 Score=34.62 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=57.8
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCC-CceEEEecccccCCChh
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIP-PADAFLFKLVFHGLGDE 192 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~d~ 192 (283)
.....+||-+|+|. |..+..+++.. +.++++.|. ++..+.+++..--.++ .|. +.+. .+|+++-.-- .+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~-~~~-~~~~~~~D~vid~~g-----~~ 245 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY-TDP-KQCKEELDFIISTIP-----TH 245 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE-SSG-GGCCSCEEEEEECCC-----SC
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec-CCH-HHHhcCCCEEEECCC-----cH
Confidence 66778999999765 88888888876 569999887 5555554441111122 221 1222 5888875432 11
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 193 DGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 193 ~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
..++...+.|+| +|+++++-.
T Consensus 246 ---~~~~~~~~~l~~---~G~iv~~G~ 266 (348)
T 3two_A 246 ---YDLKDYLKLLTY---NGDLALVGL 266 (348)
T ss_dssp ---CCHHHHHTTEEE---EEEEEECCC
T ss_pred ---HHHHHHHHHHhc---CCEEEEECC
Confidence 236778889999 799888754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=80.85 E-value=7.7 Score=27.96 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=52.7
Q ss_pred CeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCCC
Q 023384 120 GSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGLG 190 (283)
Q Consensus 120 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~ 190 (283)
.+|+=+|+|. |......+.+ -+.+++++|. ++.++.+++ ..+.++.+|..++ ...+|++++.-- +
T Consensus 8 ~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~----~ 81 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP----N 81 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS----C
T ss_pred CCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC----C
Confidence 5788898864 4333333333 3678999999 777766553 4677889998773 124888877431 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++....+.. ..+.+.| +.+++.
T Consensus 82 ~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 82 GYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp HHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred hHHHHHHHH-HHHHHCC---CCeEEE
Confidence 333444444 4455666 455443
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=80.63 E-value=3.7 Score=35.67 Aligned_cols=101 Identities=19% Similarity=0.119 Sum_probs=61.6
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEc---CC-CCCC-----C-CceEEEec
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAG---DM-FQFI-----P-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~-~~~~-----p-~~D~v~~~ 183 (283)
+....+||-+|+|. |.++..+++..-..++++.|. ++..+.+++.. ..++.. |+ .+.+ . .+|+++-.
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 66778999999876 888888988764338999997 66666665421 123322 21 1100 1 48998765
Q ss_pred ccccCCC--h----hHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 184 LVFHGLG--D----EDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 184 ~vlh~~~--d----~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
---.... + ......++...++|++ ||+++++-..
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 262 VGFEAHGLGDEANTETPNGALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp SCTTCBCSGGGTTSBCTTHHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCccccccccccccccHHHHHHHHHHHhc---CCEEEEeccc
Confidence 4321100 0 0011357888899999 7998876543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=80.11 E-value=17 Score=28.64 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCC--CeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPG--IKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh 187 (283)
...+|+=+|+ |..+..+++..-. . ++++|. ++.++.+. ..+.++.+|..++ +..+|++++..
T Consensus 8 ~~~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~--- 79 (234)
T 2aef_A 8 KSRHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDL--- 79 (234)
T ss_dssp --CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECC---
T ss_pred CCCEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcC---
Confidence 3468888887 6777888777643 4 788888 66665544 4588999998762 33588888743
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++++....+....+.+.| ..+++.
T Consensus 80 --~~d~~n~~~~~~a~~~~~---~~~iia 103 (234)
T 2aef_A 80 --ESDSETIHCILGIRKIDE---SVRIIA 103 (234)
T ss_dssp --SCHHHHHHHHHHHHHHCS---SSEEEE
T ss_pred --CCcHHHHHHHHHHHHHCC---CCeEEE
Confidence 333323334445556777 345544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 283 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 2e-78 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 1e-65 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 6e-52 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 2e-31 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 1e-25 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 1e-06 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 7e-06 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 235 bits (601), Expect = 2e-78
Identities = 115/246 (46%), Positives = 162/246 (65%), Gaps = 3/246 (1%)
Query: 38 CLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMA 97
CL+P V +DP Y L W +LTL+ G FW+F+++NP N FN+AMA
Sbjct: 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 61
Query: 98 SDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANL 157
SD++++ + +C +F+GL S+VDVGGG G+ ++II E FP +KC V D P VV NL
Sbjct: 62 SDSKLINLAL--RDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL 119
Query: 158 PEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217
++NL Y+ GDMF IP ADA L K + H D+D L+ILKK + A+ ++G+RGKV II
Sbjct: 120 SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179
Query: 218 DIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFGMRF 277
D+VI+ +++E+++T+ K L D+ M+ GKER E EW KLF +A F HYKI+P+ G
Sbjct: 180 DMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLS 238
Query: 278 LIEIYP 283
LIEIYP
Sbjct: 239 LIEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 203 bits (517), Expect = 1e-65
Identities = 71/245 (28%), Positives = 121/245 (49%), Gaps = 6/245 (2%)
Query: 39 LSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMAS 98
L+ + P + + + ++ L++ VHG+ +EFM ++ +NQ FN++M
Sbjct: 4 LASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD 63
Query: 99 DTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLP 158
++ E FEG+ +LVDVGGG+G +I +P IK DLP V+ N P
Sbjct: 64 VCATEMKRML--EIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 121
Query: 159 EADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218
++++ GDMF +P DA + K V H DE ++ L A+ GKVII++
Sbjct: 122 PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVE 178
Query: 219 IVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT-PIFGMRF 277
++ E E ++ D +M + G+ERTE ++ KL + FS +++ F
Sbjct: 179 FILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLG 238
Query: 278 LIEIY 282
++E Y
Sbjct: 239 VMEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 168 bits (426), Expect = 6e-52
Identities = 72/244 (29%), Positives = 116/244 (47%), Gaps = 7/244 (2%)
Query: 38 CLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMA 97
+S + D + + L + +G+ +E+ +P N+ FN+ M+
Sbjct: 4 SISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMS 62
Query: 98 SDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANL 157
+ I ++ E FEGL SLVDVGGG G++ I +P IK DLPHV+ +
Sbjct: 63 DHSTITMKKIL--ETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 158 PEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217
P ++++ GDMF IP ADA K + H DE LK LK A+ + GKVI+
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEAL---PDNGKVIVA 177
Query: 218 DIVINAEEEEHELTETKFLFDIVM-SVNATGKERTESEWAKLFFDACFSHYKITPIFGMR 276
+ ++ + T+ D++M + N GKERT+ E+ L A F +K+
Sbjct: 178 ECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNT 237
Query: 277 FLIE 280
+++E
Sbjct: 238 YIME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 115 bits (287), Expect = 2e-31
Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 21/227 (9%)
Query: 70 WETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGN 129
+ +G FWE ++ + + F+ M+ D ++ A + + ++DVGGGN
Sbjct: 36 YAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD---WSAVRHVLDVGGGN 92
Query: 130 GSLSRIISEAFPGIKCTVLDLPHVVA-------NLPEADNLKYIAGD-MFQFIPPADAFL 181
G + I+ P ++ T+++L + AD + GD AD L
Sbjct: 93 GGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVL 152
Query: 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVM 241
V DED L IL+ A+ G+++++D + T L D+ M
Sbjct: 153 LSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADVEGDGADRFFST--LLDLRM 207
Query: 242 SVNATGKERTESEWAKLFFDACFSHYKITPIFGMRF-----LIEIYP 283
G+ RT E L A + ++E
Sbjct: 208 LTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 99.7 bits (247), Expect = 1e-25
Identities = 38/225 (16%), Positives = 79/225 (35%), Gaps = 18/225 (8%)
Query: 70 WETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGN 129
+E+++G F+E + P + F+ +A D ++ + + ++DVGGG
Sbjct: 35 YESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPA---AAYDWTNVRHVLDVGGGK 91
Query: 130 GSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGL 189
G + I+ P + TVL++ V + ++ + L + +
Sbjct: 92 GGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAII 151
Query: 190 GDEDGLKILKKRRAAIASNGER-----GKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244
L I + G+++I + E+ E D+ M V
Sbjct: 152 LSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD---LHENSFNEQFTELDLRMLVF 208
Query: 245 ATGKERTESEWAKLFFDACFSHYKITPI------FGMRFLIEIYP 283
G RT +W L A ++ + + + L+ + P
Sbjct: 209 LGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLS-LLVLAP 252
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 44.0 bits (104), Expect = 1e-06
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 1 MRLLVHSGCFKKTKV----NGQEEAYGLTAASTLLIKDK 35
+RLL + + YGL + L+K++
Sbjct: 69 LRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 42.1 bits (99), Expect = 7e-06
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 1 MRLLVHSGCFKKTKV----NGQEEAYGLTAASTLLIKDK 35
+RLL T G E YGL+ L+ D+
Sbjct: 71 LRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 109
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 283 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.89 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.85 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.84 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.82 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.82 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.8 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.8 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.79 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.71 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.7 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.7 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.69 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.68 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.68 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.67 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.66 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.61 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.57 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.55 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.55 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.52 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.52 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.51 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.5 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.48 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.48 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.41 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.38 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.37 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.36 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.33 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.33 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.33 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.32 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.32 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.3 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.29 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.21 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.19 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.14 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.11 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.09 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.07 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.01 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.01 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.92 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.9 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.89 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.87 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.86 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.82 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.68 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.62 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.61 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.61 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.6 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.57 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.57 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.46 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.45 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.45 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.43 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.35 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.33 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.32 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.29 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.28 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.27 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.25 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.25 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.19 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.11 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.08 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.0 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.0 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.99 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.97 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.89 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.84 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.7 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.64 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.6 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.46 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.43 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.35 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.24 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.18 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.09 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.94 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 96.85 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.73 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 96.62 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.33 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.87 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.74 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.31 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.73 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.46 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.95 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.93 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.91 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.71 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.32 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 92.87 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.38 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 92.22 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.64 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.55 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.1 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.06 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.66 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.49 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.26 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.95 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 89.37 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.09 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.28 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.74 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 87.58 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 87.57 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 86.54 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.45 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 86.31 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.18 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 85.21 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 84.45 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 84.25 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 81.08 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.59 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=2.6e-51 Score=339.77 Aligned_cols=242 Identities=29% Similarity=0.499 Sum_probs=209.0
Q ss_pred CChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhc
Q 023384 37 YCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIF 116 (283)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 116 (283)
.|+++++.++++|..+++|.+|+++++++++++|+.+||.++|+|+.++|+..+.|+.+|...+....+.+++ .++ .+
T Consensus 2 g~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~-~~~-~f 79 (244)
T d1fp1d2 2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE-IYT-GF 79 (244)
T ss_dssp CCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHH-HCC-TT
T ss_pred ccHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH-hcc-cc
Confidence 3789999999889899999999999999887899999999999999999999999999999999988899999 887 36
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
++..+|||||||+|.+++++++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|+|+++++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~ 159 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIE 159 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHH
Confidence 88899999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEc-CCc
Q 023384 197 ILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPI-FGM 275 (283)
Q Consensus 197 iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~ 275 (283)
+|++++++|+| ||+++|+|.++++....+........+|+.|+...+|++||.+||+++|++|||+.+++++. .+.
T Consensus 160 iL~~~~~aL~p---gg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~ 236 (244)
T d1fp1d2 160 FLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNS 236 (244)
T ss_dssp HHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTT
T ss_pred HHHHHHHHcCC---CcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCC
Confidence 99999999999 89999999999887655422223457788888888999999999999999999999999766 467
Q ss_pred ceEEEEeC
Q 023384 276 RFLIEIYP 283 (283)
Q Consensus 276 ~~~i~~~~ 283 (283)
.+|||++|
T Consensus 237 ~~viE~~K 244 (244)
T d1fp1d2 237 LGVMEFYK 244 (244)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 89999998
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.2e-50 Score=333.43 Aligned_cols=240 Identities=47% Similarity=0.877 Sum_probs=217.0
Q ss_pred ChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcC
Q 023384 38 CLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFE 117 (283)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~ 117 (283)
++.+++.++.+|.++.+|..|+++++++.+++|+.++|+++|+|+.++|+..+.|+++|...+......+.+ . .+.++
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~-~~~~~ 79 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-C-DFVFD 79 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-C-HHHHT
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-h-ccccc
Confidence 578899999899899999999999999988999999999999999999999999999999888776666554 2 23378
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
+..+|||||||+|.++++++++||+++++++|+|++++.+...+||+++.+||++++|++|+|+++++||+|+|++|++|
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~i 159 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI 159 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHH
Confidence 88999999999999999999999999999999999999998899999999999998889999999999999999999999
Q ss_pred HHHHHHhhccCCCC---cEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCC
Q 023384 198 LKKRRAAIASNGER---GKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFG 274 (283)
Q Consensus 198 L~~~~~~L~p~~~g---g~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 274 (283)
|++++++|+| | |+++|+|.++++....+........+|++|+. .+|++||.+||+++|++|||+.+++++.++
T Consensus 160 L~~~~~al~p---gg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~~~ 235 (244)
T d1fp2a2 160 LKKCKEAVTN---DGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTG 235 (244)
T ss_dssp HHHHHHHHSG---GGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEET
T ss_pred HHHHHHHcCc---ccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEECCC
Confidence 9999999999 5 89999999998876654333334567787765 689999999999999999999999999999
Q ss_pred cceEEEEeC
Q 023384 275 MRFLIEIYP 283 (283)
Q Consensus 275 ~~~~i~~~~ 283 (283)
..+|||++|
T Consensus 236 ~~svIE~~p 244 (244)
T d1fp2a2 236 FLSLIEIYP 244 (244)
T ss_dssp TEEEEEEEC
T ss_pred CeEEEEEeC
Confidence 999999997
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=2.6e-48 Score=322.65 Aligned_cols=240 Identities=29% Similarity=0.479 Sum_probs=218.6
Q ss_pred CChhhhhhhhcCccchhhhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhc
Q 023384 37 YCLSPTVSVFVDPFFVAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIF 116 (283)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~ 116 (283)
.|+++++.+..++.+++.|.+|++++|+|+ ++|+.++|+++|+|+.++|+..+.|..+|...+....+.+++ .+++ +
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~-~~~~-~ 79 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILE-TYTG-F 79 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHH-HCCT-T
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHH-hccc-c
Confidence 488999999988888999999999999998 689999999999999999999999999999998888888888 8873 4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHH
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
++..+|||||||+|.+++++++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|+++++||+|+|+++++
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~ 159 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK 159 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHH
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHH
Confidence 66789999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccccccccc-CCccCCHHHHHHHHHHCCCCeeeEEEcCCc
Q 023384 197 ILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNA-TGKERTESEWAKLFFDACFSHYKITPIFGM 275 (283)
Q Consensus 197 iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 275 (283)
+|++++++|+| ||+++|+|.++++....+........+|+.|+.++ +|++||.+||+++|++|||+.+++++.++.
T Consensus 160 iL~~~~~al~p---gg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~ 236 (243)
T d1kyza2 160 FLKNCYEALPD---NGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFN 236 (243)
T ss_dssp HHHHHHHHCCS---SSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETT
T ss_pred HHHHHHHhcCC---CceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 99999999999 89999999998876654322233457888888764 899999999999999999999999998888
Q ss_pred ceEEEEe
Q 023384 276 RFLIEIY 282 (283)
Q Consensus 276 ~~~i~~~ 282 (283)
.+|||.+
T Consensus 237 ~~viE~~ 243 (243)
T d1kyza2 237 TYIMEFL 243 (243)
T ss_dssp EEEEEEC
T ss_pred CEEEEeC
Confidence 9999963
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=4.1e-44 Score=299.73 Aligned_cols=240 Identities=20% Similarity=0.293 Sum_probs=205.5
Q ss_pred CCCChhhhhhhhcCccc-hhhhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhh
Q 023384 35 KPYCLSPTVSVFVDPFF-VAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECK 113 (283)
Q Consensus 35 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~ 113 (283)
+|.++++|+.+...... ..+|.+|.+++|+|. .+|+..+|.++|+|+.++|+..+.|+++|...+....+.+++ .++
T Consensus 1 hp~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~-~~d 78 (256)
T d1qzza2 1 HPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPAD-AYD 78 (256)
T ss_dssp CTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHH-TSC
T ss_pred CcHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHh-cCC
Confidence 35678888876543222 246999999999998 579999999999999999999999999999998888899999 898
Q ss_pred hhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCCCCC-CceEEEeccc
Q 023384 114 QIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQFIP-PADAFLFKLV 185 (283)
Q Consensus 114 ~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~~~p-~~D~v~~~~v 185 (283)
|++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|+.++.+|+++++| +||+|+++++
T Consensus 79 --~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~v 156 (256)
T d1qzza2 79 --WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFV 156 (256)
T ss_dssp --CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESC
T ss_pred --CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccc
Confidence 89999999999999999999999999999999999988876653 6899999999999777 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
||+|+|+++.++|++++++||| ||+++|+|.+.++.....+ .....+|+.|+...+|++||.+||++++++|||+
T Consensus 157 Lh~~~d~~~~~lL~~i~~~Lkp---gG~llI~d~~~~~~~~~~~--~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~ 231 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR--FFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 231 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H--HHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred ccccCcHHHHHHHHHHHhhcCC---cceeEEEEeccCCCCcccH--HHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCc
Confidence 9999999999999999999999 8999999988765543321 2345679999988899999999999999999999
Q ss_pred eeeEEEcCC-----cceEEEEeC
Q 023384 266 HYKITPIFG-----MRFLIEIYP 283 (283)
Q Consensus 266 ~~~~~~~~~-----~~~~i~~~~ 283 (283)
++++++.+. ..+|||+++
T Consensus 232 ~~~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 232 LASERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEEEECCSSCSSCEEEEEEEE
T ss_pred eeEEEEeCCcCccCceEEEEEEe
Confidence 999987643 358999874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=8.3e-42 Score=285.56 Aligned_cols=222 Identities=23% Similarity=0.390 Sum_probs=195.3
Q ss_pred hhhhhhHHHhhccCCcchhHHhhCCchhhHhhcCccHHHHHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccH
Q 023384 52 VAPYQSLSSWFKGAELTLWETVHGIKFWEFMNQNPGINQRFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGS 131 (283)
Q Consensus 52 ~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~ 131 (283)
..+|.+|++++|+|+ .+|..++|+++|+|+.++|+..+.|..+|...+....+.+++ .++ +++..+|||||||+|.
T Consensus 18 ~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~-~~d--~~~~~~VLDvGcG~G~ 93 (253)
T d1tw3a2 18 DISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAA-AYD--WTNVRHVLDVGGGKGG 93 (253)
T ss_dssp GGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHH-HSC--CTTCSEEEEETCTTSH
T ss_pred cccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHh-hcC--CccCCEEEEeCCCCCH
Confidence 456999999999998 579999999999999999999999999999988888899999 999 8999999999999999
Q ss_pred HHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCCCCC-CceEEEecccccCCChhHHHHHHHHHHH
Q 023384 132 LSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQFIP-PADAFLFKLVFHGLGDEDGLKILKKRRA 203 (283)
Q Consensus 132 ~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~ 203 (283)
++..+++++|+++++++|+|++++.+++ .+|++++.+|++++.| +||+|+++++||+|+|+++.++|+++++
T Consensus 94 ~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~ 173 (253)
T d1tw3a2 94 FAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAE 173 (253)
T ss_dssp HHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHH
Confidence 9999999999999999999888776653 5899999999999665 5999999999999999999999999999
Q ss_pred hhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEEcCC-----cceE
Q 023384 204 AIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITPIFG-----MRFL 278 (283)
Q Consensus 204 ~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-----~~~~ 278 (283)
+||| ||+++|.|...++..... .....+|+.|+...+|++||.+||++++++|||++++++..+. ...+
T Consensus 174 ~LkP---GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~l 247 (253)
T d1tw3a2 174 ALEP---GGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSL 247 (253)
T ss_dssp TEEE---EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEE
T ss_pred hcCC---CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEE
Confidence 9999 899999998766554432 2345678888888899999999999999999999999877643 2466
Q ss_pred EEEeC
Q 023384 279 IEIYP 283 (283)
Q Consensus 279 i~~~~ 283 (283)
|+..|
T Consensus 248 i~~~P 252 (253)
T d1tw3a2 248 LVLAP 252 (253)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.89 E-value=4.4e-22 Score=162.26 Aligned_cols=164 Identities=12% Similarity=0.094 Sum_probs=125.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH--CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA--FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~v~~~~ 184 (283)
.++..+|||||||+|..+..+++. .|+.+++++|+ +++++.|++ ..++.+..+|+.+ +.+.+|++++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 466789999999999999999986 48999999999 888887764 5678888999887 666799999999
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc--------------cCCccC
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN--------------ATGKER 250 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 250 (283)
++|++++++..++|++++++|+| ||.+++.|...++........ ...+..+..... ..-..+
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHLL-IDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSHHHHHHH-HHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred eccccChhhHHHHHHHHHHhCCC---CceeecccccccccchhhhHH-HHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 99999988889999999999999 899999998877664322110 001111100000 001346
Q ss_pred CHHHHHHHHHHCCCCeeeEEEcCCcceEEEEeC
Q 023384 251 TESEWAKLFFDACFSHYKITPIFGMRFLIEIYP 283 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 283 (283)
+.+++.++|+++||+.++++......+.+.|+|
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 889999999999999999875555566677776
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.85 E-value=1.1e-20 Score=158.94 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=121.2
Q ss_pred hhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEE
Q 023384 96 MASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIA 167 (283)
Q Consensus 96 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~ 167 (283)
...........+.. ..+ +++..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++|+.
T Consensus 48 ~~~~~~~~~~~l~~-~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~ 123 (282)
T d2o57a1 48 SLRTDEWLASELAM-TGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 123 (282)
T ss_dssp HHHHHHHHHHHHHH-TTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHHHHH-hcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccc
Confidence 33333334444444 444 7788999999999999999999875 679999999 777776664 57999999
Q ss_pred cCCCC-CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 168 GDMFQ-FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 168 ~d~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
+|+.+ +++ .||+|++..++||+++.+ ++|++++++||| ||++++.+....+....... ....+...
T Consensus 124 ~d~~~l~~~~~sfD~V~~~~~l~h~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~---~~~~~~~~--- 192 (282)
T d2o57a1 124 GSFLEIPCEDNSYDFIWSQDAFLHSPDKL--KVFQECARVLKP---RGVMAITDPMKEDGIDKSSI---QPILDRIK--- 192 (282)
T ss_dssp CCTTSCSSCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEECTTCCGGGG---HHHHHHHT---
T ss_pred cccccccccccccchhhccchhhhccCHH--HHHHHHHHhcCC---CcEEEEEEeecCCCCchhHH---HHHHHHhc---
Confidence 99998 766 399999999999998865 789999999999 89999999887665433211 11111111
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEEc
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
.....+.+++.++++++||+.+++...
T Consensus 193 -~~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 193 -LHDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp -CSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred -cCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 122357899999999999998887654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.84 E-value=1.2e-20 Score=154.04 Aligned_cols=152 Identities=13% Similarity=0.250 Sum_probs=114.8
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP-- 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-- 175 (283)
.+++ ..+ +.+..+|||||||+|.++..+++.. .+++++|+ +++++.|++ .++++|+.+|+.+ +++
T Consensus 6 ~ll~-~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 6 KLMQ-IAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHH-HHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHH-hcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence 3445 444 7888999999999999999999885 47899999 888877653 5789999999998 766
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
.||+|++..++||++|.+ ++|++++++||| ||++++.+...++......... ... ........+.++.++|
T Consensus 81 ~fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~ 151 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDAFDVFYN---YVE-KERDYSHHRAWKKSDW 151 (231)
T ss_dssp CEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHHHHHHHH---HHH-HHHCTTCCCCCBHHHH
T ss_pred ccccccccccccccCCHH--HHHHHHHHhcCC---CcEEEEEeCCCCCCHHHHHHHH---HHH-hhcccCcccCCCHHHH
Confidence 499999999999998876 779999999999 8999999987765432210100 000 0001112355688999
Q ss_pred HHHHHHCCCCeeeEEE
Q 023384 256 AKLFFDACFSHYKITP 271 (283)
Q Consensus 256 ~~ll~~aGf~~~~~~~ 271 (283)
.++|+++||+++++..
T Consensus 152 ~~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 152 LKMLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHCCCEEEEEEE
Confidence 9999999999887643
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=3.2e-20 Score=153.68 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=115.3
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--Cc
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--PA 177 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~~ 177 (283)
.+++ .++ ..+..+|||+|||+|.++..++..+.+ +++++|. +.+++.|++ ..+++|..+|+.+ +++ .|
T Consensus 84 ~fl~-~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T d1xtpa_ 84 NFIA-SLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHH-TST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHh-hCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence 3444 444 456789999999999999999887655 7899999 888887764 4568999999987 554 39
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHH
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAK 257 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 257 (283)
|+|++..+|||++|++..++|++++++|+| ||.++|.|.+....... .+. ..+...|+.++|++
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~~---------~d~----~d~~~~rs~~~~~~ 223 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKR 223 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHH
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcce---------ecc----cCCceeCCHHHHHH
Confidence 999999999999999999999999999999 79999988766543221 000 01234579999999
Q ss_pred HHHHCCCCeeeEEEc
Q 023384 258 LFFDACFSHYKITPI 272 (283)
Q Consensus 258 ll~~aGf~~~~~~~~ 272 (283)
+++++||++++....
T Consensus 224 l~~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 224 LFNESGVRVVKEAFQ 238 (254)
T ss_dssp HHHHHTCCEEEEEEC
T ss_pred HHHHcCCEEEEEEee
Confidence 999999999887654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.5e-20 Score=150.55 Aligned_cols=140 Identities=13% Similarity=0.143 Sum_probs=113.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
..+..+|||||||+|.++..+++..+ .+++++|+ +++++.|++ ..+++|+++|+.+ +++ .||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 35568999999999999999887765 38999999 888877664 3567999999988 554 4999999999
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
+||+++++..++|++++++|+| ||.+++.+...++..... .......|+.++|+++++++||+
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~aGf~ 199 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVILD--------------DVDSSVCRDLDVVRRIICSAGLS 199 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEEE--------------TTTTEEEEBHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhHHHHHHHhcCC---cceEEEEEcccccccccc--------------cCCceeeCCHHHHHHHHHHcCCE
Confidence 9999999888999999999999 799999987765432211 00123456899999999999999
Q ss_pred eeeEEEcC
Q 023384 266 HYKITPIF 273 (283)
Q Consensus 266 ~~~~~~~~ 273 (283)
+++.....
T Consensus 200 ii~~~~q~ 207 (222)
T d2ex4a1 200 LLAEERQE 207 (222)
T ss_dssp EEEEEECC
T ss_pred EEEEEEeC
Confidence 99876643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=2.2e-19 Score=146.88 Aligned_cols=150 Identities=17% Similarity=0.289 Sum_probs=115.6
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC--C
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP--P 176 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p--~ 176 (283)
+++ ..+ +++..+|||||||+|.++..++++. .+++++|+ +.+++.|++ .+++.++.+|..+ +++ +
T Consensus 8 l~~-~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 82 (234)
T d1xxla_ 8 MIK-TAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 82 (234)
T ss_dssp HHH-HHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHH-HhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence 445 566 8889999999999999999999986 47899999 778877764 4689999999998 766 3
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccc-cccCCccCCHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS-VNATGKERTESEW 255 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~e~ 255 (283)
||+|++..++|+++|.+ .+|++++++||| ||++++.+...++......+ ...+... .....+.++..+|
T Consensus 83 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T d1xxla_ 83 FDIITCRYAAHHFSDVR--KAVREVARVLKQ---DGRFLLVDHYAPEDPVLDEF-----VNHLNRLRDPSHVRESSLSEW 152 (234)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH-----HHHHHHHHCTTCCCCCBHHHH
T ss_pred cceeeeeceeecccCHH--HHHHHHHHeeCC---CcEEEEEEcCCCCCHHHHHH-----HHHHHhhCCCcccccCCHHHH
Confidence 99999999999998865 889999999999 79999988776654322101 0011111 1123456789999
Q ss_pred HHHHHHCCCCeeeEEE
Q 023384 256 AKLFFDACFSHYKITP 271 (283)
Q Consensus 256 ~~ll~~aGf~~~~~~~ 271 (283)
.++++++||.+.++..
T Consensus 153 ~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 153 QAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHTTEEEEEEEE
T ss_pred HHHHHHCCCceeEEEE
Confidence 9999999998766543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=3.5e-19 Score=146.65 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=115.2
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-- 175 (283)
.+.+ .+. +.+..+|||||||+|..+..++++++ ++++++|+ +.+++.+++ .++++|+.+|+.+..+
T Consensus 24 ~l~~-~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 24 TLGR-VLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHH-HTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHH-HcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 3445 555 77789999999999999999998875 79999999 777776654 5789999999998433
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHH
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEW 255 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 255 (283)
.||+|++..++|+++|.+ ++|++++++||| ||++++.+............ ..... ........+..++
T Consensus 100 ~fD~v~~~~~~~~~~d~~--~~l~~~~r~LkP---GG~l~i~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~ 167 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGFA--GAEELLAQSLKP---GGIMLIGEPYWRQLPATEEI---AQACG----VSSTSDFLTLPGL 167 (245)
T ss_dssp CEEEEEEESCGGGTSSSH--HHHHHHTTSEEE---EEEEEEEEEEETTCCSSHHH---HHTTT----CSCGGGSCCHHHH
T ss_pred ceeEEEEEehhhccCCHH--HHHHHHHHHcCc---CcEEEEEeccccCCCChHHH---HHHhc----cCCCcccCCHHHH
Confidence 499999999999999865 789999999999 89999998776554332101 10000 0112345688999
Q ss_pred HHHHHHCCCCeeeEEEc
Q 023384 256 AKLFFDACFSHYKITPI 272 (283)
Q Consensus 256 ~~ll~~aGf~~~~~~~~ 272 (283)
.++++++||+++.....
T Consensus 168 ~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 168 VGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHTTTBCCCEEEEC
T ss_pred HHHHHHcCCEEEEEEeC
Confidence 99999999998876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=8.2e-19 Score=140.75 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=103.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEecccccCCCh
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d 191 (283)
+.+..+|||||||+|.++..+. +.+++|+ +.+++.+++ .+++++.+|+.+ +++ .||+|++.++||+++|
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d 106 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDD 106 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred hCCCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-cccccccccccccccccccccccccccccccccc
Confidence 3445689999999999988773 3589999 888888764 479999999998 665 4999999999999987
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
.. ++|++++++|+| ||.+++.++........ .............+...+|.+++.++|+++||+++++..
T Consensus 107 ~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 107 PE--RALKEAYRILKK---GGYLIVGIVDRESFLGR-----EYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HH--HHHHHHHHHEEE---EEEEEEEEECSSSHHHH-----HHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cc--cchhhhhhcCCC---CceEEEEecCCcchhHH-----hhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 54 789999999999 78888887644321110 000000111111234567999999999999999888764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.73 E-value=6.3e-18 Score=141.81 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=107.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~~vl 186 (283)
+....+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++|+.+|+.+ +++ +||+|++.++|
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 567789999999999999999998875 78999999 788877764 3478999999988 665 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC--------ccchhhhhhhhhcccc-cccccCCccC-CHHHHH
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE--------EEEHELTETKFLFDIV-MSVNATGKER-TESEWA 256 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~-t~~e~~ 256 (283)
||+++.+ ++|++++++||| ||.+++.|+..... ...........+..+. ......++.. -..++.
T Consensus 105 ~~~~d~~--~~l~~~~~~Lkp---gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 179 (281)
T d2gh1a1 105 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP 179 (281)
T ss_dssp GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHH
T ss_pred hcCCCHH--HHHHHHHHHcCc---CcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999876 789999999999 89999988542111 0000000000000000 0011122222 124678
Q ss_pred HHHHHCCCCeeeEEE
Q 023384 257 KLFFDACFSHYKITP 271 (283)
Q Consensus 257 ~ll~~aGf~~~~~~~ 271 (283)
.+++++||+.+++.-
T Consensus 180 ~~l~eaGf~~i~~~~ 194 (281)
T d2gh1a1 180 IYLSELGVKNIECRV 194 (281)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHcCCeEEEEEE
Confidence 899999999987654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=1.2e-16 Score=131.52 Aligned_cols=96 Identities=20% Similarity=0.277 Sum_probs=81.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCCC-ceEEEec-ccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIPP-ADAFLFK-LVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p~-~D~v~~~-~vl 186 (283)
.++..+|||||||+|..+..++++ +.+++++|+ +.+++.|++ ..++++..+|+.+ ++++ ||+|++. .++
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~ 116 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI 116 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhh
Confidence 456679999999999999999987 458999999 888887775 4589999999988 7664 9999885 688
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
|+++.++..++|+++++.|+| ||.+++
T Consensus 117 ~~~~~~~~~~~L~~~~~~Lkp---gG~lii 143 (251)
T d1wzna1 117 MYFDEEDLRKLFSKVAEALKP---GGVFIT 143 (251)
T ss_dssp GGSCHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hcCChHHHHHHHHHHHHHcCC---CcEEEE
Confidence 888888889999999999999 676655
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.70 E-value=4.2e-17 Score=132.33 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=103.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-CCC-CceEEEecccccCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-FIP-PADAFLFKLVFHGLG 190 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~~p-~~D~v~~~~vlh~~~ 190 (283)
+....+|||||||+|.++..++++. .+++++|+ +++++.+++ ..+++++.+|+.+ +.+ .||+|++.++|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 4456789999999999999998875 46999999 888888765 5689999999887 444 499999999999998
Q ss_pred hhHHHHHHHHHH-HhhccCCCCcEEEEEeeecCCCccchhhh--hhhhhccccc--ccccCCccCCHHHHHHHHHHCCCC
Q 023384 191 DEDGLKILKKRR-AAIASNGERGKVIIIDIVINAEEEEHELT--ETKFLFDIVM--SVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 191 d~~~~~iL~~~~-~~L~p~~~gg~lli~d~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
|+. .+|++++ ++|+| ||.+++.-+............ .......+.- .....-+.++.++++++++++||+
T Consensus 96 d~~--~~l~~i~~~~Lk~---gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~ 170 (225)
T d2p7ia1 96 DPV--ALLKRINDDWLAE---GGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQ 170 (225)
T ss_dssp SHH--HHHHHHHHTTEEE---EEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred CHH--HHHHHHHHHhcCC---CceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCE
Confidence 875 7799998 68999 788877654322110000000 0000000000 001123456899999999999999
Q ss_pred eeeEE
Q 023384 266 HYKIT 270 (283)
Q Consensus 266 ~~~~~ 270 (283)
+++..
T Consensus 171 i~~~~ 175 (225)
T d2p7ia1 171 VTYRS 175 (225)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88754
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=1e-16 Score=133.84 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=119.1
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~ 176 (283)
..+++ .+. +++..+|||||||.|.++..++++++ ++++++|+ ++.++.+++ ..++.+...|+.+....
T Consensus 42 ~~~~~-~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~ 117 (280)
T d2fk8a1 42 DLNLD-KLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP 117 (280)
T ss_dssp HHHHT-TSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred HHHHH-HcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccc
Confidence 44566 665 78889999999999999999888875 69999999 777665543 56788888887654346
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchh----h-hhhhhhccccc-ccccCCccC
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHE----L-TETKFLFDIVM-SVNATGKER 250 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~----~-~~~~~~~~~~~-~~~~~~~~~ 250 (283)
||.|++..+++|++++....+|++++++||| ||+++|.+.+..+...... . .......++.. ....+|...
T Consensus 118 fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP 194 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP 194 (280)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred hhhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence 9999999999999998888999999999999 7999998866544321100 0 00001112211 112466778
Q ss_pred CHHHHHHHHHHCCCCeeeEEEc
Q 023384 251 TESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
+.+++.+.++++||++.++...
T Consensus 195 S~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 195 STEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp CHHHHHHHHHHTTCBCCCCEEC
T ss_pred chHhhhhhHHhhccccceeeec
Confidence 9999999999999999887654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=2.7e-16 Score=124.97 Aligned_cols=100 Identities=24% Similarity=0.270 Sum_probs=84.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-CCC-CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-FIP-PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~v~~~~vl 186 (283)
+....+|||||||+|..+..++++ ..+++++|+ +++++.+++ .+++.+...|+.+ +.+ .||+|++..++
T Consensus 28 ~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~ 105 (198)
T d2i6ga1 28 VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM 105 (198)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence 344579999999999999999998 468999999 777776553 4679999999988 444 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
|++++++..++|++++++|+| ||.+++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~ 136 (198)
T d2i6ga1 106 MFLEAQTIPGLIANMQRCTKP---GGYNLIVAAM 136 (198)
T ss_dssp GGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred ecCCHHHHHHHHHHHHHHcCC---CcEEEEEEec
Confidence 999999999999999999999 7888776654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.68 E-value=2.9e-16 Score=131.12 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=120.3
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~ 176 (283)
+.+++ .+. +++..+|||||||.|.+++.+++++ +++++++++ ++.++.+++ .+++++..+|+.+....
T Consensus 52 ~~~~~-~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 127 (285)
T d1kpga_ 52 DLALG-KLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 127 (285)
T ss_dssp HHHHT-TTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCC
T ss_pred HHHHH-HcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Confidence 45566 666 8888999999999999999999998 589999999 665554432 68999999998763236
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccch----hhh-hhhhhcccc-cccccCCccC
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEH----ELT-ETKFLFDIV-MSVNATGKER 250 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~----~~~-~~~~~~~~~-~~~~~~~~~~ 250 (283)
||.|++...+.|+..+....++++++++||| ||++++.+.....+.... +.. ......++. .....+|...
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP 204 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP 204 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence 9999999999999877667899999999999 899999887754322110 000 001111111 1112467777
Q ss_pred CHHHHHHHHHHCCCCeeeEEEc
Q 023384 251 TESEWAKLFFDACFSHYKITPI 272 (283)
Q Consensus 251 t~~e~~~ll~~aGf~~~~~~~~ 272 (283)
+.+++.++++++||++.++...
T Consensus 205 sl~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 205 SIPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp CHHHHHHHHHTTTCEEEEEEEC
T ss_pred ChhhHHHHHHHhchhhcccccc
Confidence 9999999999999999888665
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.68 E-value=2.5e-16 Score=129.33 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC-CceEEEec-cccc
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP-PADAFLFK-LVFH 187 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p-~~D~v~~~-~vlh 187 (283)
....+|||||||+|.++..++++. .+++++|+ +++++.|++ ..+++++.+|+.+ +.+ .||+|++. ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 345799999999999999999985 47999999 888887764 5589999999988 555 49998864 6776
Q ss_pred CC-ChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 188 GL-GDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 188 ~~-~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++ +.++..++|+++++.|+| ||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence 66 566788999999999999 676554
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.67 E-value=3.1e-16 Score=127.10 Aligned_cols=142 Identities=10% Similarity=0.065 Sum_probs=110.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCCCC--C--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQFI--P--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~--p--~~D~v~~~~vl 186 (283)
+.+..+|||||||+|..+..+++..|+.+++++|+ |.+++.+.+ ..++..+.+|...+. . .+|++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 67889999999999999999999999999999999 777765543 677888888887732 2 37888888888
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
|++.+. ..+++++++.||| ||.+++.+.........++ ....+++.+.|+++||++
T Consensus 152 ~~~~~~--~~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~~~-------------------~~~~~e~~~~L~~aGF~i 207 (230)
T d1g8sa_ 152 AQPNQA--EILIKNAKWFLKK---GGYGMIAIKARSIDVTKDP-------------------KEIFKEQKEILEAGGFKI 207 (230)
T ss_dssp CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEGGGTCSSSCH-------------------HHHHHHHHHHHHHHTEEE
T ss_pred cchHHH--HHHHHHHHHhccc---CceEEEEeeccccCCCCCH-------------------HHHHHHHHHHHHHcCCEE
Confidence 877654 4779999999999 7998888765544332210 112467889999999999
Q ss_pred eeEEEcCCc---ceEEEE
Q 023384 267 YKITPIFGM---RFLIEI 281 (283)
Q Consensus 267 ~~~~~~~~~---~~~i~~ 281 (283)
++...+.++ +.++++
T Consensus 208 ve~idL~py~~~H~~vvg 225 (230)
T d1g8sa_ 208 VDEVDIEPFEKDHVMFVG 225 (230)
T ss_dssp EEEEECTTTSTTEEEEEE
T ss_pred EEEecCCCCcCCeEEEEE
Confidence 999887543 666665
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=6.1e-16 Score=129.52 Aligned_cols=162 Identities=19% Similarity=0.184 Sum_probs=119.8
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCCC
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIPP 176 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p~ 176 (283)
..+++ .+. ++++.+|||||||.|.+++.++++++ ++++++++ ++.++.+++ ..++.+...|+..+-..
T Consensus 51 ~~~~~-~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 126 (291)
T d1kpia_ 51 KLALD-KLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 126 (291)
T ss_dssp HHHHH-TTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHH-hcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence 45566 666 88899999999999999999999986 69999999 665554432 67899988887554346
Q ss_pred ceEEEecccccCCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhh-----hhhhhccccc-cc
Q 023384 177 ADAFLFKLVFHGLGD-------EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELT-----ETKFLFDIVM-SV 243 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~-----~~~~~~~~~~-~~ 243 (283)
||.|++...+.|+++ +.-..++++++++||| ||++++.....++........ ......++.. ..
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi 203 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI 203 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence 999999999988886 3356899999999999 899999988876542211000 0001112111 11
Q ss_pred ccCCccCCHHHHHHHHHHCCCCeeeEEEcC
Q 023384 244 NATGKERTESEWAKLFFDACFSHYKITPIF 273 (283)
Q Consensus 244 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 273 (283)
..+|...+.+++..+++++||++.++....
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeecc
Confidence 246777899999999999999998886653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.66 E-value=4e-16 Score=126.02 Aligned_cols=100 Identities=19% Similarity=0.318 Sum_probs=86.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-CCC--CceEEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-FIP--PADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~~p--~~D~v~~~~vl 186 (283)
++...+|||||||+|.++..+++. +.+++++|+ +++++.|++ ...+.++.+|+.+ +++ .||+|++..++
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSI 112 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecch
Confidence 456689999999999999999985 678999999 888877764 4678899999998 665 49999999999
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
|++++++..++|+++.++||| ||+++|....
T Consensus 113 ~~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~ 143 (226)
T d1ve3a1 113 VHFEPLELNQVFKEVRRVLKP---SGKFIMYFTD 143 (226)
T ss_dssp GGCCHHHHHHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred hhCChhHHHHHHHHHHHHcCc---CcEEEEEEcC
Confidence 999988888999999999999 7888876654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.61 E-value=2.8e-15 Score=118.38 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=86.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------------------CCCeEEEEcCCCCCC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------------------ADNLKYIAGDMFQFI-- 174 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~rv~~~~~d~~~~~-- 174 (283)
.++..+|||||||+|..+..|+++ +.+++++|+ +.+++.+++ ...+++..+|+++..
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 677899999999999999999998 789999999 778876653 345688999998832
Q ss_pred C--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 175 P--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 175 p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
+ .+|+|+.+.++|++++++....+++++++||| ||++++.......
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~~ 143 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQ 143 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCS
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEccccc
Confidence 2 49999999999999999889999999999999 7888776654433
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.58 E-value=1.5e-14 Score=118.99 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=80.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC--C-CceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI--P-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~--p-~~D~v~~~ 183 (283)
.+...+|||||||+|..+..+++... .+++++|+ +++++.|++ ..++.|..+|++. ++ . .||+|++.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence 45678999999999999999988743 47999999 888877753 4579999999977 43 2 39999999
Q ss_pred ccccCC--ChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFHGL--GDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh~~--~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.++|++ +.++..++|+++++.|+| ||.+++.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~ 133 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMT 133 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCC---CCEEEEE
Confidence 999986 346678899999999999 6776664
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.7e-14 Score=117.00 Aligned_cols=130 Identities=7% Similarity=-0.019 Sum_probs=101.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------------------CCCeEEEEcCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------------------ADNLKYIAGDMF 171 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~rv~~~~~d~~ 171 (283)
.....+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++..+|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 566789999999999999999987 779999999 777764321 468999999998
Q ss_pred C-C-CC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCC
Q 023384 172 Q-F-IP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATG 247 (283)
Q Consensus 172 ~-~-~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (283)
+ + .+ .||+|+.+.++|++++++....+++++++||| ||++++.....+...... .-
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~~~~g-----------------pp 180 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPTKHPG-----------------PP 180 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTTCCC-----------------SS
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCCCCCC-----------------CC
Confidence 8 3 22 49999999999999999999999999999999 788877766554322110 01
Q ss_pred ccCCHHHHHHHHHHCCCCeee
Q 023384 248 KERTESEWAKLFFDACFSHYK 268 (283)
Q Consensus 248 ~~~t~~e~~~ll~~aGf~~~~ 268 (283)
...+.+|+++++.. +|.+..
T Consensus 181 ~~~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 181 FYVPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp CCCCHHHHHHHHTT-TEEEEE
T ss_pred CCCCHHHHHHHhcC-CCEEEE
Confidence 12478999999965 666543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=2.7e-14 Score=116.98 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=104.6
Q ss_pred HHHHHhhhhhhhhHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeE
Q 023384 91 RFNEAMASDTEILTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLK 164 (283)
Q Consensus 91 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~ 164 (283)
.|..+.+..+++....+.+ ......+|||+|||+|.+++.+++. +.+++++|+ +.+++.+++ .-+++
T Consensus 98 aFGTG~H~TT~l~l~~l~~-----~~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~ 170 (254)
T d2nxca1 98 AFGTGHHETTRLALKALAR-----HLRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPR 170 (254)
T ss_dssp ----CCSHHHHHHHHHHHH-----HCCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCE
T ss_pred ccCccccchhhHHHHHHHh-----hcCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCcee
Confidence 3555555555444443333 2456789999999999999987775 568999999 888877764 44678
Q ss_pred EEEcCCCCCC--CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccc
Q 023384 165 YIAGDMFQFI--PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMS 242 (283)
Q Consensus 165 ~~~~d~~~~~--p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
+..+|..+.. ..||+|++.... +...++++.++++||| ||++++.+....
T Consensus 171 ~~~~d~~~~~~~~~fD~V~ani~~-----~~l~~l~~~~~~~Lkp---GG~lilSgil~~-------------------- 222 (254)
T d2nxca1 171 FLEGSLEAALPFGPFDLLVANLYA-----ELHAALAPRYREALVP---GGRALLTGILKD-------------------- 222 (254)
T ss_dssp EEESCHHHHGGGCCEEEEEEECCH-----HHHHHHHHHHHHHEEE---EEEEEEEEEEGG--------------------
T ss_pred EEeccccccccccccchhhhcccc-----ccHHHHHHHHHHhcCC---CcEEEEEecchh--------------------
Confidence 8999987743 359999985433 3456788999999999 788887553211
Q ss_pred cccCCccCCHHHHHHHHHHCCCCeeeEEEcCCcceE
Q 023384 243 VNATGKERTESEWAKLFFDACFSHYKITPIFGMRFL 278 (283)
Q Consensus 243 ~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~ 278 (283)
..+++.+.++++||++++......+.++
T Consensus 223 --------~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l 250 (254)
T d2nxca1 223 --------RAPLVREAMAGAGFRPLEEAAEGEWVLL 250 (254)
T ss_dssp --------GHHHHHHHHHHTTCEEEEEEEETTEEEE
T ss_pred --------hHHHHHHHHHHCCCEEEEEEEECCEEEE
Confidence 2467889999999999998887777655
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3e-15 Score=123.35 Aligned_cols=138 Identities=13% Similarity=0.032 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCC----------------------------
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADN---------------------------- 162 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~r---------------------------- 162 (283)
....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ...
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 445789999999999887666553 237999999 777776643 111
Q ss_pred --e-EEEEcCC----CC-CCC--CceEEEecccccCCCh--hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhh
Q 023384 163 --L-KYIAGDM----FQ-FIP--PADAFLFKLVFHGLGD--EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHEL 230 (283)
Q Consensus 163 --v-~~~~~d~----~~-~~p--~~D~v~~~~vlh~~~d--~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~ 230 (283)
+ .....+. .. +.+ .||+|++..+||+.+. ++...+++++++.||| ||.+++.+.........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~~~~~--- 202 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYMV--- 202 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEEE---
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEeccccccee---
Confidence 0 1111121 11 233 4999999999998753 5677899999999999 78888877543221110
Q ss_pred hhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEEE
Q 023384 231 TETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKITP 271 (283)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 271 (283)
.+. ......++.++++++|++|||+++++..
T Consensus 203 ------~~~----~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 233 (257)
T d2a14a1 203 ------GKR----EFSCVALEKGEVEQAVLDAGFDIEQLLH 233 (257)
T ss_dssp ------TTE----EEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ------ccc----cccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000 0112346899999999999999888743
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.52 E-value=1.6e-14 Score=117.93 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=78.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCC--CceEEEe-cccccCCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIP--PADAFLF-KLVFHGLG 190 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~v~~-~~vlh~~~ 190 (283)
.+...+|||||||+|.++..+++. +.+++++|+ +.+++.+++.....++.+|+.+ +++ .||+|++ ..++||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 556789999999999999999876 679999999 8888888763333467889888 765 3999987 57899998
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|.+ ++|+++++.||| ||.+++..
T Consensus 118 d~~--~~l~~i~r~Lk~---gG~~ii~~ 140 (246)
T d2avna1 118 NKD--KAFSEIRRVLVP---DGLLIATV 140 (246)
T ss_dssp CHH--HHHHHHHHHEEE---EEEEEEEE
T ss_pred hHH--HHHHHHHhhcCc---CcEEEEEE
Confidence 876 689999999999 67776654
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.52 E-value=1e-13 Score=109.46 Aligned_cols=102 Identities=12% Similarity=0.291 Sum_probs=80.8
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCCC--
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~p-- 175 (283)
+++ .++ .....+|||||||+|.++..+++..| +++++|+ +.+++.+++ ..++++..+|++++++
T Consensus 44 Li~-~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~ 118 (194)
T d1dusa_ 44 LVE-NVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHH-HCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHH-hCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence 344 444 55678999999999999999998876 6788898 777766653 4579999999998544
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.||+|++.-++|.. .+...++++++.+.|+| ||.++++
T Consensus 119 ~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~ 156 (194)
T d1dusa_ 119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVV 156 (194)
T ss_dssp CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEE
Confidence 49999998888754 44456899999999999 7887664
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=3.6e-14 Score=117.40 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=94.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CC----------------------------
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----AD---------------------------- 161 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~---------------------------- 161 (283)
.....+|||||||+|.++...+..... +++++|. +.+++.+++ ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 445689999999999887655544433 7999999 777775542 10
Q ss_pred --C-eEEEEcCCCCC-------C-C-CceEEEecccccCCCh--hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccc
Q 023384 162 --N-LKYIAGDMFQF-------I-P-PADAFLFKLVFHGLGD--EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEE 227 (283)
Q Consensus 162 --r-v~~~~~d~~~~-------~-p-~~D~v~~~~vlh~~~d--~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~ 227 (283)
. ......|..++ . + .||+|++..+||+.+. ++..++|+++++.||| ||.+++.+.........
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~~~~~ 207 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYLA 207 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEEE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCccccc
Confidence 0 12344566541 1 1 3999999999998753 4578899999999999 78888777644321110
Q ss_pred hhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCeeeEE
Q 023384 228 HELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSHYKIT 270 (283)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 270 (283)
.-.. ......+.++++++|+++||+++++.
T Consensus 208 ----------~~~~---~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 208 ----------GEAR---LTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp ----------TTEE---EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ----------CCcc---cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0000 11234699999999999999987653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.2e-13 Score=115.23 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=90.8
Q ss_pred CCeEEEEcCCccHHHHHHHHH----CCCC--eEEEeec-hHHHhcCCC-------CCCeEE--EEcCCC-------CCC-
Q 023384 119 LGSLVDVGGGNGSLSRIISEA----FPGI--KCTVLDL-PHVVANLPE-------ADNLKY--IAGDMF-------QFI- 174 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~----~p~~--~~~~~D~-~~~~~~a~~-------~~rv~~--~~~d~~-------~~~- 174 (283)
..+|||||||+|.++..++++ +|+. +++++|. +.+++.+++ ...+.+ ...++. .+.
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence 347999999999998776554 5554 5789998 677766543 234443 333331 122
Q ss_pred -CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhccc-ccccc-cCCccCC
Q 023384 175 -PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDI-VMSVN-ATGKERT 251 (283)
Q Consensus 175 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~t 251 (283)
..||+|++.++||+++|.. ++|+++++.|+| ||.++|....- ..... ..+..+ ..+.. .....++
T Consensus 121 ~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~Lkp---gG~l~i~~~~~-~~~~~------~l~~~~~~~~~~~~~~~~~~ 188 (280)
T d1jqea_ 121 LQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSG-SSGWD------KLWKKYGSRFPQDDLCQYIT 188 (280)
T ss_dssp CCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECT-TSHHH------HHHHHHGGGSCCCTTSCCCC
T ss_pred CCceeEEEEccceecCCCHH--HHHHHHHhhCCC---CCEEEEEEecC-cchHH------HHHHHHHHhcCCCcccccCC
Confidence 2499999999999998865 789999999999 78877765422 11111 001111 11111 2345678
Q ss_pred HHHHHHHHHHCCCCeee
Q 023384 252 ESEWAKLFFDACFSHYK 268 (283)
Q Consensus 252 ~~e~~~ll~~aGf~~~~ 268 (283)
.+++.++|++.||+...
T Consensus 189 ~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 189 SDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp HHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHCCCceEE
Confidence 99999999999998544
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=6.6e-14 Score=116.09 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC-CCC--CceEEEecccccCCCh
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ-FIP--PADAFLFKLVFHGLGD 191 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh~~~d 191 (283)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.+..+|..+ +++ .||+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4567999999999999999999999999999999 888887765 6789999999998 766 3999999888875
Q ss_pred hHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 192 EDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 192 ~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+++++++||| ||.+++..+.
T Consensus 160 ------~~e~~rvLkp---gG~l~~~~p~ 179 (268)
T d1p91a_ 160 ------AEELARVVKP---GGWVITATPG 179 (268)
T ss_dssp ------HHHHHHHEEE---EEEEEEEEEC
T ss_pred ------HHHHHHHhCC---CcEEEEEeeC
Confidence 4678899999 7888887753
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=1.3e-13 Score=109.75 Aligned_cols=142 Identities=11% Similarity=0.093 Sum_probs=97.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCC--Cce-EEEecccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIP--PAD-AFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p--~~D-~v~~~~vl 186 (283)
+++..+|||||||+|..+..+++..|+.+++++|+ |.+++.+++ ..++.++.+|... +.+ .+| +.++.+.+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 67889999999999999999999999999999999 888877654 6789999999887 322 222 22333445
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCCe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFSH 266 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 266 (283)
+++.+. ..+++++++.||| ||++++.+.........++. . ...+..+.+ ++||++
T Consensus 134 ~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~d~~~~~~---~----------------~~~~~~~~l-~~gf~i 188 (209)
T d1nt2a_ 134 AQKNQI--EILKANAEFFLKE---KGEVVIMVKARSIDSTAEPE---E----------------VFKSVLKEM-EGDFKI 188 (209)
T ss_dssp CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEHHHHCTTSCHH---H----------------HHHHHHHHH-HTTSEE
T ss_pred cChhhH--HHHHHHHHHHhcc---CCeEEEEEEccccCCCCCHH---H----------------HHHHHHHHH-HcCCEE
Confidence 555544 4779999999999 79988876432221111100 0 011222333 479999
Q ss_pred eeEEEcCC---cceEEEEe
Q 023384 267 YKITPIFG---MRFLIEIY 282 (283)
Q Consensus 267 ~~~~~~~~---~~~~i~~~ 282 (283)
.+...+.. .+.+|.++
T Consensus 189 ~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 189 VKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp EEEEECTTTCTTEEEEEEE
T ss_pred EEEEccCCCccCcEEEEEE
Confidence 99888754 35566553
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.4e-14 Score=113.50 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=89.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC---CCC--CceEEE----
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ---FIP--PADAFL---- 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~---~~p--~~D~v~---- 181 (283)
....+|||||||+|..+..+++..| .+++++|+ +.+++.+++ ..++.++.+|... +++ .||+|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4457999999999999999988755 47999999 888887764 4567777777543 344 488876
Q ss_pred -ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHH
Q 023384 182 -FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 260 (283)
Q Consensus 182 -~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 260 (283)
....++++.+.. .++++++++||| ||++++.+........ .... ........+.+...|.
T Consensus 131 ~~~~~~~~~~~~~--~~~~~~~r~Lkp---GG~~~~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~~l~ 191 (229)
T d1zx0a1 131 PLSEETWHTHQFN--FIKNHAFRLLKP---GGVLTYCNLTSWGELM-------KSKY-------SDITIMFEETQVPALL 191 (229)
T ss_dssp CCBGGGTTTHHHH--HHHHTHHHHEEE---EEEEEECCHHHHHHHT-------TTTC-------SCHHHHHHHHTHHHHH
T ss_pred ccccccccccCHH--HHHHHHHHHcCC---CcEEEEEecCCcchhh-------hhhh-------hhcchhhhhHHHHHHH
Confidence 456666666644 789999999999 7877654321110000 0000 0001112356677888
Q ss_pred HCCCCeeeEE
Q 023384 261 DACFSHYKIT 270 (283)
Q Consensus 261 ~aGf~~~~~~ 270 (283)
++||+..++.
T Consensus 192 ~agF~~~~i~ 201 (229)
T d1zx0a1 192 EAGFRRENIR 201 (229)
T ss_dssp HTTCCGGGEE
T ss_pred HCCCeeEEEE
Confidence 9999877653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=4.8e-12 Score=104.24 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--CceEEEeccc--
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP--PADAFLFKLV-- 185 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p--~~D~v~~~~v-- 185 (283)
....+|||+|||+|..++.+++.+|+++++++|+ +.+++.|++ ..+++++.+|++++++ .||+|+++=.
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999999 888877765 4589999999999655 4999998522
Q ss_pred -----------ccCCC------h----hHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccc
Q 023384 186 -----------FHGLG------D----EDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVN 244 (283)
Q Consensus 186 -----------lh~~~------d----~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
+.+-+ . +...++++.+.+.|+| ||.+++ |...
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l-Eig~----------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL-EHGW----------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE-ECCS-----------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE-EECc-----------------------
Confidence 11101 0 2345788899999999 555444 4211
Q ss_pred cCCccCCHHHHHHHHHHCCCCeeeEEE-cCCcceEEEEe
Q 023384 245 ATGKERTESEWAKLFFDACFSHYKITP-IFGMRFLIEIY 282 (283)
Q Consensus 245 ~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~~i~~~ 282 (283)
...+.+.+++++.||..+++.. ..+...+|.++
T Consensus 240 -----~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 240 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred -----hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 1246778999999999887655 45666677664
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.37 E-value=7.8e-13 Score=107.69 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=78.0
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC--
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p-- 175 (283)
++. .++ ..++.+|||+|||+|.++..+++. .|+.+++.+|. ++.++.|++ ..++++..+|+.+.++
T Consensus 77 Ii~-~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 77 IIM-RCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHH-HcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 344 445 778899999999999999999987 68899999999 777776654 5789999999988544
Q ss_pred CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 176 PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.||+|++ +.+++. .+|++++++||| ||++++..
T Consensus 154 ~fD~V~l-----d~p~p~--~~l~~~~~~LKp---GG~lv~~~ 186 (250)
T d1yb2a1 154 MYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYL 186 (250)
T ss_dssp CEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEE
T ss_pred eeeeeee-----cCCchH--HHHHHHHHhcCC---CceEEEEe
Confidence 4999986 345544 679999999999 78887654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=4.6e-12 Score=101.78 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=98.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCCC--C----CCceEEEec
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQF--I----PPADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~--~----p~~D~v~~~ 183 (283)
++++.+|||+|||+|..+..+++.. |+-+++++|+ +.+++.+.+ ..++..+.+|...+ . +.+|+++.
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6788999999999999999999985 8899999999 777766543 56778888887652 1 23666654
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
.+++..+ ...+++++++.||| ||+++|...........+ .+.-..+..++ .+.|
T Consensus 150 -d~~~~~~--~~~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~~-------------------~~~v~~~v~~l-~~~g 203 (227)
T d1g8aa_ 150 -DVAQPTQ--AKILIDNAEVYLKR---GGYGMIAVKSRSIDVTKE-------------------PEQVFREVERE-LSEY 203 (227)
T ss_dssp -CCCSTTH--HHHHHHHHHHHEEE---EEEEEEEEEGGGTCTTSC-------------------HHHHHHHHHHH-HHTT
T ss_pred -Eccccch--HHHHHHHHHHhccc---CCeEEEEEECCccCCCCC-------------------HHHHHHHHHHH-HHcC
Confidence 3444333 45789999999999 788877653322211110 00012334444 4669
Q ss_pred CCeeeEEEcCC---cceEEEEeC
Q 023384 264 FSHYKITPIFG---MRFLIEIYP 283 (283)
Q Consensus 264 f~~~~~~~~~~---~~~~i~~~~ 283 (283)
|++.+.+.+.+ .+.+++++|
T Consensus 204 f~iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 204 FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp SEEEEEEECTTTSSSEEEEEEEC
T ss_pred CEEEEEEcCCCCCCceEEEEEEe
Confidence 99999888754 478999987
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.33 E-value=1.6e-12 Score=101.67 Aligned_cols=93 Identities=22% Similarity=0.320 Sum_probs=76.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-C--CCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-F--IPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~--~p~~D~v~~~~ 184 (283)
.....+|||||||+|.+++.+++.. .+++++|+ +++++.+++ .++++++.+|+.+ . .+.||+|++..
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 6778999999999999999998764 48999999 888887765 4799999999887 3 34699999987
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
..+++ ..+++.+.+.||| ||++++..
T Consensus 109 ~~~~~-----~~~~~~~~~~Lkp---gG~lvi~~ 134 (186)
T d1l3ia_ 109 SGGEL-----QEILRIIKDKLKP---GGRIIVTA 134 (186)
T ss_dssp CTTCH-----HHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccccc-----hHHHHHHHHHhCc---CCEEEEEe
Confidence 66543 4679999999999 78877654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=2.1e-12 Score=106.28 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=95.5
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC-
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP- 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p- 175 (283)
.++. .++ ..+..+|||+|||+|.++..+++.. |+.+++.+|. ++.++.|++ .+++.+..+|+...++
T Consensus 94 ~Ii~-~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 94 FIAM-MLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHH-hhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 4455 566 8889999999999999999999885 8899999999 888877765 4788899999876444
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHH
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESE 254 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 254 (283)
.+|.|+ ++.+++. .+|+++.++||| ||++++..+... ..++
T Consensus 171 ~~~D~V~-----~d~p~p~--~~l~~~~~~LKp---GG~lv~~~P~~~----------------------------Qv~~ 212 (266)
T d1o54a_ 171 KDVDALF-----LDVPDPW--NYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQE 212 (266)
T ss_dssp CSEEEEE-----ECCSCGG--GTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred cceeeeE-----ecCCCHH--HHHHHHHhhcCC---CCEEEEEeCccc----------------------------HHHH
Confidence 478765 4677765 679999999999 799887653220 1345
Q ss_pred HHHHHHHCCCCeeeEE
Q 023384 255 WAKLFFDACFSHYKIT 270 (283)
Q Consensus 255 ~~~ll~~aGf~~~~~~ 270 (283)
..+.++++||..+++.
T Consensus 213 ~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 213 TLKKLQELPFIRIEVW 228 (266)
T ss_dssp HHHHHHHSSEEEEEEE
T ss_pred HHHHHHHCCceeEEEE
Confidence 5677788898766654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.7e-12 Score=110.38 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=87.4
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEEEEc
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------------ADNLKYIAG 168 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~~~~ 168 (283)
..+++ .+. +....+|||||||+|..+..+++.++..+++++|+ +..++.|++ ..+++|+.+
T Consensus 141 ~~~~~-~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 141 AQMID-EIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHH-HSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHH-HcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 44555 555 67788999999999999999999999889999999 777665542 467999999
Q ss_pred CCCC-CCC----CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 169 DMFQ-FIP----PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 169 d~~~-~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
|+.+ ++. .+|+|++...+| + ++..+.|+++.+.||| ||++++.+.+.+..
T Consensus 218 d~~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LKp---Gg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 218 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLN 272 (328)
T ss_dssp CTTSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred cccccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCCC---CcEEEEecccCCCC
Confidence 9998 543 368888876654 3 3345779999999999 89999888766543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=2.2e-12 Score=105.64 Aligned_cols=104 Identities=14% Similarity=0.241 Sum_probs=85.6
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC---------CCCeEEEEcCCCC-
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE---------ADNLKYIAGDMFQ- 172 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~rv~~~~~d~~~- 172 (283)
..++. .++ ..+..+|||+|||+|.++..|++. .|+.+++.+|+ ++.++.|++ .+++.+..+|+.+
T Consensus 86 s~Ii~-~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 86 AQIVH-EGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHH-HhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 34455 555 788999999999999999999998 69999999999 888877754 5799999999987
Q ss_pred CCC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 173 FIP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 173 ~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
+++ .||.|++ |.+++. .++.+++++||| ||++++..+..
T Consensus 163 ~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp---GG~lv~~~P~i 203 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVATV 203 (264)
T ss_dssp CCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESSH
T ss_pred cccCCCcceEEE-----ecCCHH--HHHHHHHhccCC---CCEEEEEeCcc
Confidence 665 4999986 467765 669999999999 79988776443
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=3.5e-12 Score=100.87 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=77.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC--CceEEEecccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP--PADAFLFKLVF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p--~~D~v~~~~vl 186 (283)
...|||||||+|.++..+++.+|+..++++|+ +..+..+.+ ..++.++.+|+.. . ++ .+|.|++....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 35799999999999999999999999999998 766655442 5789999999876 2 44 38999888777
Q ss_pred cCCChhH------HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGDED------GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d~~------~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.++.... ...+|+.++++||| ||.+.|..
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 6544332 14789999999999 79887764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=3.1e-12 Score=107.14 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=73.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC-C--CC---Cce
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ-F--IP---PAD 178 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~-~--~p---~~D 178 (283)
..+..+|||||||+|..+..|+++ +.+++++|+ +++++.|++ ..+..+...|+.. + +| .||
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 456689999999999999999987 579999999 888877653 1244566677654 1 22 499
Q ss_pred EEEe-cccccCCCh-----hHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 179 AFLF-KLVFHGLGD-----EDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 179 ~v~~-~~vlh~~~d-----~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
+|++ ..+++|+++ ++...+|++++++||| ||.+++
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~ 172 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVI 172 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEE
Confidence 8876 458888764 4577899999999999 666544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.29 E-value=6e-12 Score=100.41 Aligned_cols=98 Identities=14% Similarity=0.304 Sum_probs=79.3
Q ss_pred HHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--
Q 023384 106 FVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 106 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-- 175 (283)
.+++ .++ ++...+|||||||+|..+..+++.. |+.+++.+|+ ++.++.+++ ..++.++.+|..+..+
T Consensus 66 ~~l~-~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~ 142 (213)
T d1dl5a1 66 LFME-WVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (213)
T ss_dssp HHHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHH-hhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence 3455 555 7888999999999999999999875 6889999999 888877765 5788999999887322
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.||+|++...+++.++ .+.+.||| ||++++.
T Consensus 143 ~~fD~I~~~~~~~~~p~--------~l~~~Lkp---GG~lv~p 174 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVPE--------TWFTQLKE---GGRVIVP 174 (213)
T ss_dssp CCEEEEEECSBBSCCCH--------HHHHHEEE---EEEEEEE
T ss_pred cchhhhhhhccHHHhHH--------HHHHhcCC---CcEEEEE
Confidence 4999999999998765 34567999 7888773
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=2e-11 Score=105.60 Aligned_cols=111 Identities=17% Similarity=0.194 Sum_probs=83.7
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------CCCeEE-EE
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------------ADNLKY-IA 167 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~rv~~-~~ 167 (283)
..+++ .++ +....+|||||||+|..+..+++.+|..+++++|+ +.+++.|++ ...+.+ ..
T Consensus 206 ~~Il~-~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 206 SDVYQ-QCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHH-HTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHH-HhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 44555 555 77888999999999999999999999889999999 777776653 233444 45
Q ss_pred cCCCC-C-----CCCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCC
Q 023384 168 GDMFQ-F-----IPPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAE 224 (283)
Q Consensus 168 ~d~~~-~-----~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~ 224 (283)
++++. + ++.+|++++.+.+| +++....|+++.+.||| ||++++.+.+.+..
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LKP---GGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAKV---GCKIISLKSLRSLT 339 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred echhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcCC---CcEEEEecccCCCc
Confidence 66665 2 23588999876554 23456889999999999 89999888766544
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.19 E-value=8e-11 Score=92.91 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=74.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC--CceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP--PADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p--~~D~v~~~~v 185 (283)
....|||||||+|.++..+++.+|+..++++|+ +..+..+.+ ..++.++.+|+.+ . ++ .+|.|++...
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence 346899999999999999999999999999999 666665532 5789999999876 2 44 3788876554
Q ss_pred ccCCChhH-------HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 186 FHGLGDED-------GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 186 lh~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
-. |+... ...+|+.+++.|+| ||.+.+..
T Consensus 111 dP-w~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~T 146 (204)
T d1yzha1 111 DP-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 146 (204)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred cc-ccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence 32 33221 14789999999999 79887753
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=9.6e-11 Score=93.92 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=74.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCC-CCC--CceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQ-FIP--PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~-~~p--~~D~ 179 (283)
.+...+|||||||+|..+..+++. .|..+++++|+ +++++.+++ ..++.++.+|... ..+ .||+
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~ 153 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 153 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence 567789999999999999988885 57889999999 888776653 4689999999887 322 4999
Q ss_pred EEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 180 FLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 180 v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
|++...+++.++ .+.+.||| ||++++.
T Consensus 154 I~~~~~~~~ip~--------~l~~~Lkp---GG~LV~p 180 (224)
T d1i1na_ 154 IHVGAAAPVVPQ--------ALIDQLKP---GGRLILP 180 (224)
T ss_dssp EEECSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred hhhhcchhhcCH--------HHHhhcCC---CcEEEEE
Confidence 999999987765 35678999 7888773
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=1.4e-10 Score=97.86 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
..++|||||||+|.++..++++.+ .+++++|..+....+++ .++|+++.+|..+ +.+ .+|+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 458899999999999998887643 47999998443332221 6889999999998 655 499999877777
Q ss_pred CCChh-HHHHHHHHHHHhhccCCCCcEEE
Q 023384 188 GLGDE-DGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 188 ~~~d~-~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
....+ ....++..+.+.|+| ||+++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp---~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAP---DGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence 65544 466889999999999 67765
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.6e-10 Score=97.27 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=87.2
Q ss_pred HHHHhhhhhhhh----HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHH-CCCCeEEEeec-hHHHhcCCC------
Q 023384 92 FNEAMASDTEIL----TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEA-FPGIKCTVLDL-PHVVANLPE------ 159 (283)
Q Consensus 92 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------ 159 (283)
|...|...++.. +..++. .++ ..++.+|||+|||+|.++..|++. .|+.+++.+|+ ++.++.|++
T Consensus 71 ~~~~~~r~tqiiypkD~~~Il~-~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~ 147 (324)
T d2b25a1 71 YVVLMKRGTAITFPKDINMILS-MMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147 (324)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHH-HHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCcccccccHHHHHH-HhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhh
Confidence 444565544432 334555 666 888999999999999999999987 58999999999 777765542
Q ss_pred -----------CCCeEEEEcCCCCC---CC--CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 160 -----------ADNLKYIAGDMFQF---IP--PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 160 -----------~~rv~~~~~d~~~~---~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.+++.+..+|+.+. ++ .||.|++ |.+++. .+|.+++++||| ||++++.-+.+
T Consensus 148 ~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp---GG~lv~~~P~i 215 (324)
T d2b25a1 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH---GGVCAVYVVNI 215 (324)
T ss_dssp HHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE---EEEEEEEESSH
T ss_pred hhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC---CCEEEEEeCCH
Confidence 47899999998762 22 3899876 455554 569999999999 79988866544
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=2.6e-10 Score=96.76 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC-------CCCeEEEEcCCCC-CCC--CceEEEeccccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE-------ADNLKYIAGDMFQ-FIP--PADAFLFKLVFH 187 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~v~~~~vlh 187 (283)
..++|||||||+|.++..++++. ..+++++|..+++..+++ .+++.++.+|+.+ ++| .+|+|++..+.|
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 35899999999999998777764 348999999655544432 6789999999998 665 499999877766
Q ss_pred CCCh-hHHHHHHHHHHHhhccCCCCcEEE
Q 023384 188 GLGD-EDGLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 188 ~~~d-~~~~~iL~~~~~~L~p~~~gg~ll 215 (283)
.... .....++..+.+.||| ||+++
T Consensus 117 ~~~~e~~~~~~~~a~~r~Lkp---gG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeccchhHHHHHHHHHhccCC---CeEEE
Confidence 5544 3456788888999999 67654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.01 E-value=7e-10 Score=88.48 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=75.1
Q ss_pred HHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCCCCC---Cce
Q 023384 107 VVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQFIP---PAD 178 (283)
Q Consensus 107 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~~~p---~~D 178 (283)
+++ .++ +....+|||||||+|..+..+++.. .+++.+|. ++.++.+++ ..++.++.+|.....+ +||
T Consensus 62 ml~-~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 62 MLD-ELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHH-HTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHH-Hhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 455 566 7888999999999999998888874 57999998 777766654 6799999999887332 499
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
+|++...+++.++ .+.+.|+| ||++++.
T Consensus 137 ~Iiv~~a~~~ip~--------~l~~qLk~---GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred HHHhhcchhhhhH--------HHHHhcCC---CCEEEEE
Confidence 9999988887765 34567999 7888773
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=9.6e-10 Score=92.49 Aligned_cols=96 Identities=22% Similarity=0.195 Sum_probs=73.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCC-------CCCCeEEEEcCCCC-CCC--CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLP-------EADNLKYIAGDMFQ-FIP--PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~rv~~~~~d~~~-~~p--~~D~v~~~~v 185 (283)
....++|||||||+|.++..++++.+ .+++++|..+....+. ..+++.++.+|..+ +.+ .+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 34568999999999999998888754 4899999944332222 16889999999998 655 4999999888
Q ss_pred ccCCChhH-HHHHHHHHHHhhccCCCCcEEE
Q 023384 186 FHGLGDED-GLKILKKRRAAIASNGERGKVI 215 (283)
Q Consensus 186 lh~~~d~~-~~~iL~~~~~~L~p~~~gg~ll 215 (283)
.|....+. ...++....+.|+| ||+++
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~ii 139 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 139 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred eeecccccccHHHHHHHHhcCCC---CcEEe
Confidence 77766553 45667777889999 67765
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=1.1e-09 Score=85.27 Aligned_cols=114 Identities=24% Similarity=0.267 Sum_probs=86.7
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCC-C---
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQ-F--- 173 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~-~--- 173 (283)
...+++ .+. ......+||++||+|..+..+++++|+.+++++|. +++++.+++ .+|+.++.++|.+ +
T Consensus 12 l~evi~-~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 12 VREVIE-FLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp HHHHHH-HHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHH-hhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 345566 555 56678999999999999999999999999999999 888887764 6799999999876 2
Q ss_pred ----CCCceEEEeccccc--CC-----ChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 174 ----IPPADAFLFKLVFH--GL-----GDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 174 ----~p~~D~v~~~~vlh--~~-----~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
..++|.|++-.-+- .+ .-....+.|..+.+.|+| ||+++++.....+
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s~E 146 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHSLE 146 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSHHH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeeccccHH
Confidence 23589888753321 00 012345778999999999 8999998865443
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.90 E-value=4e-09 Score=86.06 Aligned_cols=120 Identities=16% Similarity=0.052 Sum_probs=88.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CCC-CceEEEeccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FIP-PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~p-~~D~v~~~~v 185 (283)
.....+|||+|||+|.+++.+++. +..+++++|+ |..++.+++ .++++++.+|.++ ... .||.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 567799999999999999999887 4679999999 888776654 6789999999988 322 4999988543
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCCCC
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDACFS 265 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 265 (283)
- .+...|..+.+.|+| ||.+.+.+.+..+. ......+.+.++.++.|++
T Consensus 184 ~------~~~~~l~~a~~~l~~---gG~lh~~~~~~~~~----------------------~~~~~~e~~~~~~~~~g~~ 232 (260)
T d2frna1 184 V------RTHEFIPKALSIAKD---GAIIHYHNTVPEKL----------------------MPREPFETFKRITKEYGYD 232 (260)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEEEEEEGGG----------------------TTTTTHHHHHHHHHHTTCE
T ss_pred C------chHHHHHHHHhhcCC---CCEEEEEecccccc----------------------chhhHHHHHHHHHHHcCCc
Confidence 1 123567888889999 67766655432211 1122456778889999997
Q ss_pred ee
Q 023384 266 HY 267 (283)
Q Consensus 266 ~~ 267 (283)
+.
T Consensus 233 v~ 234 (260)
T d2frna1 233 VE 234 (260)
T ss_dssp EE
T ss_pred eE
Confidence 64
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.89 E-value=1.6e-09 Score=84.64 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCCccHHH----HHHHHHC----CCCeEEEeec-hHHHhcCCC----------------------------
Q 023384 117 EGLGSLVDVGGGNGSLS----RIISEAF----PGIKCTVLDL-PHVVANLPE---------------------------- 159 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~----~~l~~~~----p~~~~~~~D~-~~~~~~a~~---------------------------- 159 (283)
.+..+|+++|||+|.-. +.+.+.. +.+++++.|+ +..++.|++
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 34569999999999943 3333332 3457899999 777766541
Q ss_pred ---------CCCeEEEEcCCCCC-C---CCceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 160 ---------ADNLKYIAGDMFQF-I---PPADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 160 ---------~~rv~~~~~d~~~~-~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
...+.+...+...+ . ..+|+|++.+||+.++++...+++++++++|+| ||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 13356666766652 2 249999999999999999999999999999999 665554
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=3.1e-08 Score=80.26 Aligned_cols=73 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC----C-----CCceE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF----I-----PPADA 179 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~----~-----p~~D~ 179 (283)
+...++||||||+|..+..+++++|+.+++++|+ +++++.|++ .+|+.+...+..+. + ..||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4457999999999999999999999999999999 888877765 68898887654432 1 13999
Q ss_pred EEecccccCC
Q 023384 180 FLFKLVFHGL 189 (283)
Q Consensus 180 v~~~~vlh~~ 189 (283)
|++.=..+.-
T Consensus 140 ivsNPPY~~~ 149 (250)
T d2h00a1 140 CMCNPPFFAN 149 (250)
T ss_dssp EEECCCCC--
T ss_pred EEecCccccc
Confidence 9998887743
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.86 E-value=4.1e-09 Score=83.41 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=76.4
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCCC--
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~p-- 175 (283)
..+++ .++ .....+|||||||+|..+..+++.. +.+++.+|. ++.++.+++ ..++.++.+|..+..+
T Consensus 68 a~ml~-~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~ 143 (215)
T d1jg1a_ 68 AIMLE-IAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 143 (215)
T ss_dssp HHHHH-HHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHH-hhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence 34455 566 7888999999999999999888764 456888988 777776664 5899999999988333
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.||+|++...+...++. +.+.|+| ||++++.
T Consensus 144 ~pfD~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p 175 (215)
T d1jg1a_ 144 APYDVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP 175 (215)
T ss_dssp CCEEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred CcceeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence 49999999988876653 4457999 7888763
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.82 E-value=7.8e-09 Score=82.33 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=72.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHH------CCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCCCC--
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEA------FPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQFIP-- 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~~p-- 175 (283)
+.+..+|||||||+|..+..+++. .+..+++.+|. ++.++.+++ ..++.+..+|..+..+
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 157 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence 667899999999999999888775 35568999998 777766643 3589999999988322
Q ss_pred -CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 176 -PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 176 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
.||+|++...+.+.++ .+.+.|+| ||++++.
T Consensus 158 ~~fD~Iiv~~a~~~~p~--------~l~~~Lk~---gG~lV~p 189 (223)
T d1r18a_ 158 APYNAIHVGAAAPDTPT--------ELINQLAS---GGRLIVP 189 (223)
T ss_dssp CSEEEEEECSCBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred cceeeEEEEeechhchH--------HHHHhcCC---CcEEEEE
Confidence 4999999999887665 24678999 7888763
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.68 E-value=3e-08 Score=80.94 Aligned_cols=65 Identities=17% Similarity=0.353 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCCC----CceEEEec
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFIP----PADAFLFK 183 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~p----~~D~v~~~ 183 (283)
+..+++|+|||+|..+..++ ++|+.+++++|+ +..++.|++ ..++.+..+|++++.+ .||+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 45789999999999999987 579999999999 888877664 5688999999998543 58999885
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5.6e-08 Score=77.01 Aligned_cols=98 Identities=9% Similarity=0.067 Sum_probs=76.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---------CCCc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---------IPPA 177 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---------~p~~ 177 (283)
..+.++|||||+++|..+..+++..| +.+++.+|. ++..+.|++ .++++++.||..+. ...|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 45679999999999999999999987 789999998 776666553 68999999997661 1249
Q ss_pred eEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 178 DAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 178 D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
|+|++.+ ..+.-...++.+.+.|+| |.++|+|.++.
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~----GGvii~Dn~l~ 172 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRP----GGILAVLRVLW 172 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEE----EEEEEEECCSG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcC----CcEEEEeCCcc
Confidence 9999843 333456778899999999 66666675553
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.61 E-value=3.6e-08 Score=76.65 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=54.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCCCCCceEEEecccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQFIPPADAFLFKLVF 186 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~~p~~D~v~~~~vl 186 (283)
+++|||+|||+|.+++.++...+ .+++++|+ +.+++.+++ ..+++++.+|+.+....||+|++.=.+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCccc
Confidence 58999999999999987777644 47999999 888887776 678999999987633469999986443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.61 E-value=4.1e-08 Score=73.39 Aligned_cols=94 Identities=10% Similarity=0.137 Sum_probs=68.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC----CCCceEEEeccc
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF----IPPADAFLFKLV 185 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~----~p~~D~v~~~~v 185 (283)
...+|||+|||+|.++++.+.+... +++.+|. +.+++.+++ .++++++.+|.++. ...||+|++.-.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4589999999999999998887654 8999999 777765543 57899999998762 235999988432
Q ss_pred ccCCChhHHHHHHHHHHH--hhccCCCCcEEEEEee
Q 023384 186 FHGLGDEDGLKILKKRRA--AIASNGERGKVIIIDI 219 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~d~ 219 (283)
. .......+|..+.+ .|+| +.++++|.
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~----~g~iiiE~ 121 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSE----QVMVVCET 121 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEE----EEEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCC----CeEEEEEe
Confidence 1 23344566776654 5898 45556664
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=1.2e-07 Score=79.09 Aligned_cols=97 Identities=15% Similarity=0.226 Sum_probs=73.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----------CCCeEEEEcCCCCC---CC-CceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----------ADNLKYIAGDMFQF---IP-PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~rv~~~~~d~~~~---~p-~~D~ 179 (283)
-+..++||.||+|.|..+.++++..|..+++++|+ |++++.+++ .+|++++.+|..+- .+ .||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 35668999999999999999999888889999999 888876653 57999999999872 23 4999
Q ss_pred EEecccccCCCh----h--HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 180 FLFKLVFHGLGD----E--DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 180 v~~~~vlh~~~d----~--~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
|++-.. +.+.. . -..+.++.+++.|+| ||.+++
T Consensus 155 Ii~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~ 193 (312)
T d1uira_ 155 VIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGM 193 (312)
T ss_dssp EEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEE
T ss_pred EEEeCC-CcccccchhhhhhhHHHHHHHHHhcCC---CceEEE
Confidence 996432 11111 0 125789999999999 565444
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.57 E-value=2.4e-08 Score=79.03 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=73.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCCC---------CCce
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQFI---------PPAD 178 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~~---------p~~D 178 (283)
...++|||||||+|..+..++++.+ +.+++.+|. ++..+.+++ .++|+++.||..+-+ ..+|
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 4558999999999999999999875 689999999 777776653 578999999987621 2489
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 179 AFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 179 ~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
++++-+ +.........+.++.+.|+| |.++|+|.++-
T Consensus 135 ~ifiD~---~~~~~~~~~~l~~~~~lLkp----GGvIv~Ddvl~ 171 (214)
T d2cl5a1 135 MVFLDH---WKDRYLPDTLLLEKCGLLRK----GTVLLADNVIV 171 (214)
T ss_dssp EEEECS---CGGGHHHHHHHHHHTTCEEE----EEEEEESCCCC
T ss_pred eeeecc---cccccccHHHHHHHhCccCC----CcEEEEeCcCC
Confidence 998752 22222223346777788999 55777776553
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.57 E-value=1.1e-07 Score=80.06 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=72.8
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C----CCceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I----PPADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~----p~~D~v 180 (283)
.++..+|||++||+|.+++.+++... .+++.+|+ +..++.+++ .++++++.+|.++. . ..||+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 45678999999999999999887743 48999999 888777664 46899999998862 1 249999
Q ss_pred EecccccCCCh---h----HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 181 LFKLVFHGLGD---E----DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 181 ~~~~vlh~~~d---~----~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
++.-.-..-.. . .-.++++.+.+.|+| ||.++...
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s 263 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCS 263 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEE
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEe
Confidence 98432211111 1 224578888999999 67766654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=8.1e-07 Score=72.90 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=71.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CCC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FIP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p-~~D~v~ 181 (283)
+..++||-||+|.|..+.++++..+..+++++|+ |++++.+++ .+|++++.+|..+ ..+ .||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4668999999999999999998777889999999 889887764 5899999999876 223 499999
Q ss_pred ecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 182 FKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 182 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
+-. .+..... -....++.+++.|+| ||.+++
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~ 190 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKE---DGVLCC 190 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEE---EEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCC---CCeEEE
Confidence 853 2222211 123569999999999 455444
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.45 E-value=2.7e-07 Score=72.04 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCCCCceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFIPPADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~p~~D~v~~~~vlh~ 188 (283)
.+.+|||+|||+|.++++++.. +..+++++|+ +..++.+++ ..+.+++.+|..+....||+|++.=..+.
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGS 121 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccc
Confidence 3479999999999999987765 3458999999 777766553 66789999998774446999998655543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.45 E-value=9.7e-07 Score=72.07 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=73.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC--C-CC-CceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ--F-IP-PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~--~-~p-~~D~v 180 (283)
-+..++||-||+|.|..+.++++..|..+++++|+ |++++.+++ ..|++++.+|... . .+ .||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 35568999999999999999998877889999999 888877653 6799999999877 2 22 49999
Q ss_pred EecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 181 LFKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 181 ~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++-..-. .... -....++.+++.|+| +|.++.
T Consensus 153 i~D~~~p-~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~ 187 (274)
T d1iy9a_ 153 MVDSTEP-VGPAVNLFTKGFYAGIAKALKE---DGIFVA 187 (274)
T ss_dssp EESCSSC-CSCCCCCSTTHHHHHHHHHEEE---EEEEEE
T ss_pred EEcCCCC-CCcchhhccHHHHHHHHhhcCC---CceEEE
Confidence 9753211 1110 134779999999999 455443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=8.6e-07 Score=72.97 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC---CC-CceEEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF---IP-PADAFL 181 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~v~ 181 (283)
+..++||-||||.|..+.++++..|..+++++|+ |.+++.+++ .+|++++.+|..+- .+ .||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4568999999999999999998877889999999 888887764 58999999998872 22 499999
Q ss_pred ecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 182 FKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 182 ~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
+-..-..-... -....++.+++.|+| ||.+++
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~ 202 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSA 202 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEE
Confidence 74322110111 125789999999999 465443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.35 E-value=1.2e-07 Score=75.41 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=75.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC---C-------CC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF---I-------PP 176 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~---~-------p~ 176 (283)
..+.++||+||+++|..+..+++..| +.+++.+|. ++..+.|++ .++++++.||..+- + ..
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 44668999999999999999999987 689999998 766665553 67899999998762 1 24
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
||+|++-. ........++.+.+.|+| |.++|+|.++
T Consensus 137 fD~iFiDa-----~k~~y~~~~e~~~~ll~~----gGiii~DNvl 172 (227)
T d1susa1 137 YDFIFVDA-----DKDNYLNYHKRLIDLVKV----GGVIGYDNTL 172 (227)
T ss_dssp BSEEEECS-----CSTTHHHHHHHHHHHBCT----TCCEEEETTT
T ss_pred eeEEEecc-----chhhhHHHHHHHHhhcCC----CcEEEEccCC
Confidence 99999843 334456889999999999 5566777554
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.33 E-value=1.8e-06 Score=71.34 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=70.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCCC---C-CCceEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQF---I-PPADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~~---~-p~~D~v 180 (283)
-+..++||-||+|.|..+.++++..|-.+++++|+ +++++.+++ .+|++++.+|..+- - ..||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 35668999999999999999998777778999999 888876653 58999999998872 2 249999
Q ss_pred EecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 181 LFKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 181 ~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++-..- ..... -....++.++++|+| ||.++.
T Consensus 184 I~D~~d-p~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~ 218 (312)
T d2b2ca1 184 ITDSSD-PVGPAESLFGQSYYELLRDALKE---DGILSS 218 (312)
T ss_dssp EECCC--------------HHHHHHHHEEE---EEEEEE
T ss_pred EEcCCC-CCCcchhhhhHHHHHHHHhhcCC---CcEEEE
Confidence 984321 11111 235678999999999 455444
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.32 E-value=6.2e-07 Score=68.10 Aligned_cols=94 Identities=12% Similarity=0.212 Sum_probs=60.9
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC-----CCCceEEEe
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF-----IPPADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~-----~p~~D~v~~ 182 (283)
.....+|||+|||+|.++++.+.+ ..+++.+|. +.+++.+++ ..++.....|.+.+ ...||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 556789999999999999988876 468889999 888776654 44555555554321 125999998
Q ss_pred cccccCCChhHHHHHHHHHH--HhhccCCCCcEEEEEee
Q 023384 183 KLVFHGLGDEDGLKILKKRR--AAIASNGERGKVIIIDI 219 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~--~~L~p~~~gg~lli~d~ 219 (283)
.=..+ .... +++..+. ..|+| || +++++.
T Consensus 117 DPPY~-~~~~---~~l~~l~~~~ll~~---~g-~ivie~ 147 (171)
T d1ws6a1 117 APPYA-MDLA---ALFGELLASGLVEA---GG-LYVLQH 147 (171)
T ss_dssp CCCTT-SCTT---HHHHHHHHHTCEEE---EE-EEEEEE
T ss_pred ccccc-cCHH---HHHHHHHHcCCcCC---Ce-EEEEEe
Confidence 53322 1221 2233332 46898 44 566664
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.29 E-value=1e-06 Score=72.90 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=71.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCC-------CCceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFI-------PPADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~-------p~~D~ 179 (283)
.....+|||+.||+|.++..+++. ..+++.+|. +..++.+++ ..+++|+.+|.++-+ ..||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456689999999999999988876 568999999 777777764 357999999998721 24999
Q ss_pred EEec---cccc----CCC-hhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 180 FLFK---LVFH----GLG-DEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 180 v~~~---~vlh----~~~-d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
|++. ..-. .|. .+....+++.+.+.|+| ||.+++...
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~ 252 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTA 252 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEec
Confidence 9982 1110 111 12344567788889998 566565543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.28 E-value=5.7e-07 Score=73.63 Aligned_cols=96 Identities=15% Similarity=0.220 Sum_probs=70.7
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------------CCCeEEEEcCCCC---CCC
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------------ADNLKYIAGDMFQ---FIP 175 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~rv~~~~~d~~~---~~p 175 (283)
-++..+||.||||.|..+.++++ +|..+++++|+ |.+++.+++ .+|++++.+|..+ .-.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 35668999999999999999886 56678999999 888876642 4799999999875 223
Q ss_pred CceEEEecccccCCChhH---HHHHHHHHHHhhccCCCCcEEEE
Q 023384 176 PADAFLFKLVFHGLGDED---GLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 176 ~~D~v~~~~vlh~~~d~~---~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.||+|++-.. +..+... ....++.+++.|+| +|.+++
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~ 188 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNN---PGIYVT 188 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEE---EEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCC---CceEEE
Confidence 5999987433 2222211 25789999999999 465443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.27 E-value=6.1e-07 Score=75.05 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCC---C----CCceEEEe
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQF---I----PPADAFLF 182 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~---~----p~~D~v~~ 182 (283)
....+|||++||+|.+++++++. ..+++.+|+ +..++.+++ -++++++.+|.++. . ..||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 34689999999999999998765 558999999 888877764 46799999998761 1 24999998
Q ss_pred cccccCCCh-------hHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 183 KLVFHGLGD-------EDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 183 ~~vlh~~~d-------~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.-.-...+. ..-.++++.+.+.|+| ||.|+...
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~s 261 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATAS 261 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 432211111 1224688899999999 67666544
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=1e-06 Score=67.62 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC--CC--CCceEEEeccccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ--FI--PPADAFLFKLVFH 187 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~--~~--p~~D~v~~~~vlh 187 (283)
..+|||++||+|.++++.+.+... +++.+|. +.+++.+++ ..++.++.+|.++ .. ..||+|++.=...
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 379999999999999998888654 7999999 777765553 5678899999876 22 2499999965433
Q ss_pred CCChhHHHHHHHHHHH--hhccCCCCcEEEEEeee
Q 023384 188 GLGDEDGLKILKKRRA--AIASNGERGKVIIIDIV 220 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~d~~ 220 (283)
.....+++..+.+ .|++ +.++++|..
T Consensus 123 ---~~~~~~~l~~l~~~~~L~~----~~iIiiE~~ 150 (183)
T d2fpoa1 123 ---RGLLEETINLLEDNGWLAD----EALIYVESE 150 (183)
T ss_dssp ---TTTHHHHHHHHHHTTCEEE----EEEEEEEEE
T ss_pred ---cchHHHHHHHHHHCCCCCC----CeEEEEEec
Confidence 2233455666654 4898 556666643
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.25 E-value=7.4e-07 Score=73.37 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=73.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----------CCCeEEEEcCCCC---CCC--CceEE
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----------ADNLKYIAGDMFQ---FIP--PADAF 180 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~rv~~~~~d~~~---~~p--~~D~v 180 (283)
++.++||=||+|.|..+.++++..|-.+++++|+ +++++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4668999999999999999999777778999999 888877764 6899999999776 222 49999
Q ss_pred EecccccCCChh---HHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 181 LFKLVFHGLGDE---DGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 181 ~~~~vlh~~~d~---~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
++-.. ...... -....++.+++.|+| ||.+++.
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 194 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 194 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCC---CcEEEEe
Confidence 97432 111111 135789999999999 4555443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=2.9e-06 Score=66.10 Aligned_cols=92 Identities=18% Similarity=0.241 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHH---hcCCC---CCCeEEEEcCCCCC--CCCceEEEecccccC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV---ANLPE---ADNLKYIAGDMFQF--IPPADAFLFKLVFHG 188 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~---~~a~~---~~rv~~~~~d~~~~--~p~~D~v~~~~vlh~ 188 (283)
...+|+|||+|.|.-++.++-.+|+.+++++|. ..-+ +.+.. -.+++++.....+. ...||+|+++.+-
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~-- 142 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA-- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence 347999999999999999999999999999997 3322 22211 46899999988883 2359999887653
Q ss_pred CChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 189 LGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 189 ~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
+ ...+++-+...+++ +|++++.-
T Consensus 143 --~--~~~ll~~~~~~l~~---~g~~~~~K 165 (207)
T d1jsxa_ 143 --S--LNDMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp --S--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred --C--HHHHHHHHHHhcCC---CcEEEEEC
Confidence 3 34778888888998 68877654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.11 E-value=2.4e-06 Score=68.46 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=65.3
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CCCC-
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FIPP- 176 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~p~- 176 (283)
...+++ ..+ .....+|||||||+|.++..|++. ..+++++|+ +..++.+++ ..+++++.+|+.+ +++.
T Consensus 18 i~kIv~-~~~--~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 18 LNQIIK-QLN--LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp HHHHHH-HCC--CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHH-hcC--CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccc
Confidence 355666 555 667789999999999999999998 457899998 666666654 4689999999999 7764
Q ss_pred ceEEEecccccCCChhHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~ 196 (283)
.+..+.++.=++.+.+-..+
T Consensus 93 ~~~~vv~NLPY~Ist~il~~ 112 (245)
T d1yuba_ 93 QRYKIVGNIPYHLSTQIIKK 112 (245)
T ss_dssp SEEEEEEECCSSSCHHHHHH
T ss_pred eeeeEeeeeehhhhHHHHHH
Confidence 44445566656777754333
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.08 E-value=1.7e-06 Score=72.19 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=69.2
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCCCC------C-CceE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQFI------P-PADA 179 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~~~------p-~~D~ 179 (283)
.....+|||+.||+|.+++..++. ...+++.+|+ +..++.+++ ..+++++.+|.++.+ . .||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 456789999999999999887664 3347899999 766665543 468999999998621 2 4999
Q ss_pred EEeccc--------ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 180 FLFKLV--------FHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 180 v~~~~v--------lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
|++-=. ++.. -.+-.++++.+.+.|+| ||.+++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~p---gG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSE---NGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence 998311 1110 11245789999999999 56655533
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.00 E-value=6e-06 Score=65.68 Aligned_cols=90 Identities=13% Similarity=0.278 Sum_probs=62.2
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC----CCCCeEEEEcCCCC-CCCC-
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP----EADNLKYIAGDMFQ-FIPP- 176 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~rv~~~~~d~~~-~~p~- 176 (283)
...+++ ..+ .....+|||||||+|.++..|++.. .+++++|+ +..++..+ ..++++++.+|+.+ +++.
T Consensus 10 ~~~iv~-~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~ 84 (235)
T d1qama_ 10 IDKIMT-NIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN 84 (235)
T ss_dssp HHHHHT-TCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred HHHHHH-hcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccc
Confidence 455566 554 6778999999999999999999984 47888888 66555443 26799999999998 6664
Q ss_pred ceEEEecccccCCChhHHHHHHHHHH
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRR 202 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~ 202 (283)
....+.++. |-.-...|+.++.
T Consensus 85 ~~~~vv~NL----PYnIss~il~~ll 106 (235)
T d1qama_ 85 QSYKIFGNI----PYNISTDIIRKIV 106 (235)
T ss_dssp CCCEEEEEC----CGGGHHHHHHHHH
T ss_pred ccceeeeee----hhhhhHHHHHHHH
Confidence 233333333 3333445566554
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.00 E-value=4.8e-06 Score=63.66 Aligned_cols=96 Identities=15% Similarity=0.112 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCCC------C-CCceEEEe
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQF------I-PPADAFLF 182 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~~------~-p~~D~v~~ 182 (283)
...+|||+.||+|.++.+.+.+... +++.+|. +.+++.+++ .++++++.+|.++- . ..||+|++
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 4689999999999999999988543 7899998 777666553 56899999998762 1 14999998
Q ss_pred cccccCCChhHHHHHHHHHHH--hhccCCCCcEEEEEeeec
Q 023384 183 KLVFHGLGDEDGLKILKKRRA--AIASNGERGKVIIIDIVI 221 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~d~~~ 221 (283)
.=..+ ......+|..+.+ .|++ +.++|+|.-.
T Consensus 120 DPPY~---~~~~~~~l~~i~~~~~L~~----~giIi~E~~~ 153 (182)
T d2fhpa1 120 DPPYA---KQEIVSQLEKMLERQLLTN----EAVIVCETDK 153 (182)
T ss_dssp CCCGG---GCCHHHHHHHHHHTTCEEE----EEEEEEEEET
T ss_pred chhhh---hhHHHHHHHHHHHCCCCCC----CEEEEEEcCC
Confidence 43321 2334567777765 5898 4566777543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.99 E-value=2.7e-05 Score=60.92 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=68.4
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCC-CeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CC-CCceEEEecccccCCC-
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPG-IKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FI-PPADAFLFKLVFHGLG- 190 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~-p~~D~v~~~~vlh~~~- 190 (283)
.....+|||.|||+|.++.++.++.+. ..++++|+ +..+..+ .+..++.+|++. +. ..||+++..-......
T Consensus 17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~npP~~~~~~ 93 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGE 93 (223)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSC
T ss_pred CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceecccCccccccc
Confidence 455689999999999999999887665 56899999 5443333 356778899888 32 3599999865543211
Q ss_pred --h------h------------------HHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 191 --D------E------------------DGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 191 --d------~------------------~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
. . -...++.++.+.|+| ||++.++-
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~ 144 (223)
T d2ih2a1 94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVV 144 (223)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEE
Confidence 0 0 123557888899999 78877764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.97 E-value=1e-05 Score=67.74 Aligned_cols=99 Identities=11% Similarity=0.153 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHH-----CCCCeEEEeec-hHHHhcCCC-----CCCeEEEEcCCCCCC--CCceEEEec
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEA-----FPGIKCTVLDL-PHVVANLPE-----ADNLKYIAGDMFQFI--PPADAFLFK 183 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~-----~~rv~~~~~d~~~~~--p~~D~v~~~ 183 (283)
....+|+|.+||+|.++.++.+. .++.+++++|+ +.++..|+. .....+..+|.+... ..||+|++.
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 34568999999999999998764 34567899999 766665543 567788888888733 359999997
Q ss_pred ccccCCChhH----------------HHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 184 LVFHGLGDED----------------GLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 184 ~vlh~~~d~~----------------~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
=.+......+ -..++.++.+.|+| ||++.++-
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~ 243 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLV 243 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEe
Confidence 5542211111 12368899999999 78876654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.89 E-value=4.4e-05 Score=60.45 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHH---hcCCC---CCCeEEEEcCCCC-C----C-CCceEEEec
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVV---ANLPE---ADNLKYIAGDMFQ-F----I-PPADAFLFK 183 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~---~~a~~---~~rv~~~~~d~~~-~----~-p~~D~v~~~ 183 (283)
....+++|||+|.|.-++.++-.+|+.+++.+|. ..-+ +.+.+ -.++.++.....+ . . ..||+|+++
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 3567999999999999999999999999999997 3222 22221 4678887776543 1 2 249999998
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHHCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFDAC 263 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 263 (283)
.+- + ...++.-+...+++ ||++++.---. . .-..++.++.++..|
T Consensus 149 Ava----~--l~~ll~~~~~~l~~---~g~~i~~KG~~----~----------------------~~El~~a~~~~~~~~ 193 (239)
T d1xdza_ 149 AVA----R--LSVLSELCLPLVKK---NGLFVALKAAS----A----------------------EEELNAGKKAITTLG 193 (239)
T ss_dssp CCS----C--HHHHHHHHGGGEEE---EEEEEEEECC-----C----------------------HHHHHHHHHHHHHTT
T ss_pred hhh----C--HHHHHHHHhhhccc---CCEEEEECCCC----h----------------------HHHHHHHHHHHHHcC
Confidence 753 2 44788889999999 68877654110 0 001344566778889
Q ss_pred CCeeeEEE
Q 023384 264 FSHYKITP 271 (283)
Q Consensus 264 f~~~~~~~ 271 (283)
++..++..
T Consensus 194 ~~~~~v~~ 201 (239)
T d1xdza_ 194 GELENIHS 201 (239)
T ss_dssp EEEEEEEE
T ss_pred CEEEEEEE
Confidence 88776644
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.84 E-value=3.5e-05 Score=58.57 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=78.6
Q ss_pred HHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC-C-------
Q 023384 105 SFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ-F------- 173 (283)
Q Consensus 105 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~-~------- 173 (283)
..+++ .+. ......+||..+|.|..+..++++ +.+++++|. |+++..+++ ..|+.++.++|.+ .
T Consensus 8 ~Evl~-~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~ 82 (182)
T d1wg8a2 8 QEALD-LLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 82 (182)
T ss_dssp HHHHH-HHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHH-hcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence 45556 554 567789999999999999999997 568999999 888877654 6799999998876 2
Q ss_pred CCCceEEEeccc-----ccCCCh--hHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 174 IPPADAFLFKLV-----FHGLGD--EDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 174 ~p~~D~v~~~~v-----lh~~~d--~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
...+|.|++-.- |.+-.+ ......|....+.|+| ||+++++..
T Consensus 83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~f 132 (182)
T d1wg8a2 83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAF 132 (182)
T ss_dssp CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEec
Confidence 124888877331 211111 1234568888999999 799888775
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00025 Score=53.63 Aligned_cols=98 Identities=17% Similarity=0.239 Sum_probs=67.8
Q ss_pred hhhhhcCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeechHHHhcCCCCCCeEEEEcCCCC-CC----------CCce
Q 023384 111 ECKQIFEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDLPHVVANLPEADNLKYIAGDMFQ-FI----------PPAD 178 (283)
Q Consensus 111 ~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~rv~~~~~d~~~-~~----------p~~D 178 (283)
.|+ .+++..+||||||+.|.++..+.+.. +..+++++|+.++ .....+.++.+|+.+ .. ..+|
T Consensus 16 k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 16 SDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp HHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred HhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhccCccee
Confidence 444 35778899999999999999988764 5578999998432 235678999999987 21 1489
Q ss_pred EEEecccccCCC----hh-----HHHHHHHHHHHhhccCCCCcEEEE
Q 023384 179 AFLFKLVFHGLG----DE-----DGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 179 ~v~~~~vlh~~~----d~-----~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
+|++-....--. |+ -+...|.-+.+.|++ ||.+++
T Consensus 91 lVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~ 134 (180)
T d1ej0a_ 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVV 134 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred EEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEE
Confidence 998865543222 11 123456667788999 566544
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.64 E-value=0.00011 Score=57.90 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=62.7
Q ss_pred CCeEEEEcCCccHHHHHHHHH----CCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCC--C---C--CceEEEeccc
Q 023384 119 LGSLVDVGGGNGSLSRIISEA----FPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQF--I---P--PADAFLFKLV 185 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~--~---p--~~D~v~~~~v 185 (283)
.++||+||++.|..+..++.. .++.+++++|+ +........ ..|++++.+|..++ + . .+|+|++-..
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 479999999999877655432 37889999998 544333322 68999999997662 1 2 3788777543
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
|.. +.....+ ...+.|++ ||.++|-|.
T Consensus 161 -H~~--~~v~~~~-~~~~lLk~---GG~iIveD~ 187 (232)
T d2bm8a1 161 -HAN--TFNIMKW-AVDHLLEE---GDYFIIEDM 187 (232)
T ss_dssp -CSS--HHHHHHH-HHHHTCCT---TCEEEECSC
T ss_pred -cch--HHHHHHH-HHhcccCc---CCEEEEEcC
Confidence 643 2233334 46688998 666666554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00025 Score=57.36 Aligned_cols=91 Identities=21% Similarity=0.322 Sum_probs=62.7
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEEEEcCCCC-CC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKYIAGDMFQ-FI 174 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~~~~d~~~-~~ 174 (283)
...+++ ... ......|||||+|.|.++..|++..+ +++++++ +..++..++ .++++++.+|+.+ +.
T Consensus 10 ~~kIv~-~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 10 INSIID-KAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHH-HTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHH-HhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 455566 444 56678999999999999999999854 6777776 444433321 4689999999999 77
Q ss_pred CCceEEEecccccCCChhHHHHHHHHHHHh
Q 023384 175 PPADAFLFKLVFHGLGDEDGLKILKKRRAA 204 (283)
Q Consensus 175 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~~ 204 (283)
|..+.++.+ +|=.-...|+.++...
T Consensus 85 ~~~~~vV~N-----LPY~Iss~il~~~~~~ 109 (278)
T d1zq9a1 85 PFFDTCVAN-----LPYQISSPFVFKLLLH 109 (278)
T ss_dssp CCCSEEEEE-----CCGGGHHHHHHHHHHC
T ss_pred hhhhhhhcc-----hHHHHHHHHHHHHHhh
Confidence 766655543 3433445666665544
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00086 Score=56.20 Aligned_cols=84 Identities=10% Similarity=0.142 Sum_probs=62.1
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCCCC-------CCceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQFI-------PPADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~~~-------p~~D~v~ 181 (283)
..+..+|||+-||+|.++..|++. ..+++++|. ++.++.|++ ..+++|+.+|..+.+ ..+|+++
T Consensus 210 ~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 210 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred cCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 456789999999999999999886 357999999 777777664 678999999988732 1379988
Q ss_pred ecccccCCChhHHHHHHHHHHHhhcc
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p 207 (283)
+ |-|..-+.++++.+.+. +|
T Consensus 288 l-----DPPR~G~~~~~~~l~~~-~~ 307 (358)
T d1uwva2 288 L-----DPARAGAAGVMQQIIKL-EP 307 (358)
T ss_dssp E-----CCCTTCCHHHHHHHHHH-CC
T ss_pred e-----CCCCccHHHHHHHHHHc-CC
Confidence 8 43443344556666554 56
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.43 E-value=0.00039 Score=54.64 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=62.6
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcC---CC---CCCeEEEEcCCCCC-CC-CceEEEeccccc
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANL---PE---ADNLKYIAGDMFQF-IP-PADAFLFKLVFH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a---~~---~~rv~~~~~d~~~~-~p-~~D~v~~~~vlh 187 (283)
+....+|||+|||.|.++..++...+...+.++|+..-.... .+ .+-+++...+-... .+ ..|++++--.=+
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~vlcDm~es 143 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGES 143 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCCEEEeeCCCC
Confidence 666789999999999999999888766677777762111111 11 23345555543332 23 489999864322
Q ss_pred CCC----hhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 188 GLG----DEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 188 ~~~----d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.-+ .+...++|.-+.+.|+| ||-+++ -.+.
T Consensus 144 s~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv-KVl~ 177 (257)
T d2p41a1 144 SPNPTVEAGRTLRVLNLVENWLSN---NTQFCV-KVLN 177 (257)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE-EESC
T ss_pred CCCchhhhhhHHHHHHHHHHHccc---CCEEEE-EECC
Confidence 111 12345778888899999 676444 4333
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.35 E-value=0.00065 Score=55.45 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCCC---------CCCeEEEEcCCCCCCC----------C-
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLPE---------ADNLKYIAGDMFQFIP----------P- 176 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~rv~~~~~d~~~~~p----------~- 176 (283)
.+...||.+|||-=.-...+ ...++++++-+|.|++++.-++ ..+..++..|+.++.+ +
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45578999999977766554 3357889999999998763221 4556778888775421 1
Q ss_pred ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 177 ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 177 ~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.-++++-.++..++.++..++|+.+.+...| |+. +++|...
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~-l~~d~~~ 207 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSR-IAVETSP 207 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCE-EEEECCC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CCE-EEEEecc
Confidence 3467777889999999999999999999998 455 5566543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=0.00012 Score=58.59 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC----CCCeEEEEcCCCC-CC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE----ADNLKYIAGDMFQ-FI 174 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~rv~~~~~d~~~-~~ 174 (283)
...+++ ... ......||+||||+|.++..|++.. .+++++|+ +..++..++ .++++++.+|+.+ +.
T Consensus 10 ~~~Iv~-~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 10 IDSIVS-AIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHH-HHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred HHHHHH-hcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 455666 554 5677899999999999999999874 46778887 655544332 5789999999997 54
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.18 E-value=0.00044 Score=52.35 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=65.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--------CCCeEEEEcCCCC----C--CCCceEEEec
Q 023384 119 LGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE--------ADNLKYIAGDMFQ----F--IPPADAFLFK 183 (283)
Q Consensus 119 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~rv~~~~~d~~~----~--~p~~D~v~~~ 183 (283)
..+|||+-||||.++.+.+.+... +++.+|. +..+...++ .....+...|.++ . .+.||+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 379999999999999999988543 7899998 665543332 3456677776544 1 1249999985
Q ss_pred ccccCCChhHHHHHHHHHHH--hhccCCCCcEEEEEeeecC
Q 023384 184 LVFHGLGDEDGLKILKKRRA--AIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~--~L~p~~~gg~lli~d~~~~ 222 (283)
=... .+....+|..+.+ .|++ +.++++|.-..
T Consensus 123 PPY~---~~~~~~~l~~l~~~~~L~~----~~liiiE~~~~ 156 (183)
T d2ifta1 123 PPFH---FNLAEQAISLLCENNWLKP----NALIYVETEKD 156 (183)
T ss_dssp CCSS---SCHHHHHHHHHHHTTCEEE----EEEEEEEEESS
T ss_pred hhHh---hhhHHHHHHHHHHhCCcCC----CcEEEEEecCC
Confidence 4432 2234566777765 5898 66777776443
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.09 E-value=0.016 Score=48.07 Aligned_cols=149 Identities=16% Similarity=0.185 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCccHHHH-------HHHH-H--------CCCCeEEEeechHH-----HhcCCC----CCC--eEEEEcCC
Q 023384 118 GLGSLVDVGGGNGSLSR-------IISE-A--------FPGIKCTVLDLPHV-----VANLPE----ADN--LKYIAGDM 170 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~-------~l~~-~--------~p~~~~~~~D~~~~-----~~~a~~----~~r--v~~~~~d~ 170 (283)
+.-+|.|+||.+|..+. ...+ + -|.+++..-|+|.. ...... ..+ +.-++|.|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 34679999999999873 2222 1 35677888898642 222222 122 34577899
Q ss_pred CC-CCCC--ceEEEecccccCCCh-------------------------------hHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 171 FQ-FIPP--ADAFLFKLVFHGLGD-------------------------------EDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 171 ~~-~~p~--~D~v~~~~vlh~~~d-------------------------------~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
.. =+|. -++++++..||.++. .+...+|+.=++-|.| ||++++
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mvl 207 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEEE
Confidence 99 4663 899999999998752 1445688877888999 899999
Q ss_pred EeeecCCCccchh----hhh--hhhhcccccccc----------cCCccCCHHHHHHHHHHCC-CCeeeE
Q 023384 217 IDIVINAEEEEHE----LTE--TKFLFDIVMSVN----------ATGKERTESEWAKLFFDAC-FSHYKI 269 (283)
Q Consensus 217 ~d~~~~~~~~~~~----~~~--~~~~~~~~~~~~----------~~~~~~t~~e~~~ll~~aG-f~~~~~ 269 (283)
.-...++...... ... ...+.|+..... ..-..++.+|+++.+++.| |++.++
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 8877765433210 000 001112111111 1124469999999998876 555443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.94 E-value=0.0011 Score=56.90 Aligned_cols=109 Identities=16% Similarity=0.142 Sum_probs=72.8
Q ss_pred HHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC-------------CCeEEEeec-hHHHhcCCC--------CC
Q 023384 104 TSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP-------------GIKCTVLDL-PHVVANLPE--------AD 161 (283)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~--------~~ 161 (283)
++.+++ .++ .....+|+|-.||+|.++.++.+... .....++|+ +.....++. ..
T Consensus 151 v~~mv~-ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 151 IQAMVD-CIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHH-HHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hHhhhe-ecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence 344444 443 34568999999999999998877542 234788898 655544431 34
Q ss_pred CeEEEEcCCCCCCC--CceEEEecccccCCC---------------hhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 162 NLKYIAGDMFQFIP--PADAFLFKLVFHGLG---------------DEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 162 rv~~~~~d~~~~~p--~~D~v~~~~vlh~~~---------------d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
...+..+|.+...+ .||+|++.=.+..-. ...-...+.++.+.|++ ||++.++-
T Consensus 228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~ 298 (425)
T d2okca1 228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVL 298 (425)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEe
Confidence 56678889988433 499999866553211 01124579999999999 78877764
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=96.85 E-value=0.00013 Score=47.93 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=28.1
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCC
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDK 35 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~ 35 (283)
||+|+++|+|++++ ++.|++|+.|+.|.+|+
T Consensus 55 Lr~l~a~gl~~e~~----~~~y~lt~~s~~L~~Dh 85 (85)
T d1tw3a1 55 IRHLVAIGLLEEDA----PGEFVPTEVGELLADDH 85 (85)
T ss_dssp HHHHHHTTSEEEEE----TTEEEECTTGGGGSTTS
T ss_pred HHHHHHCCCeEecC----CCeEecCHHHHHhhcCC
Confidence 68999999999987 69999999999998874
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.018 Score=47.21 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeechHHHhcCC---------------------------CCCCeEEEEcCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDLPHVVANLP---------------------------EADNLKYIAGDM 170 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------------------------~~~rv~~~~~d~ 170 (283)
+...||-+|||.=.....+...+|+++++-+|.|++++.-+ ..++...+..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 44689999999999888898899999999999998875211 046788899998
Q ss_pred CC-CC----------CC-ceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 171 FQ-FI----------PP-ADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 171 ~~-~~----------p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
.+ .. ++ .-++++--+|..++.+++.++|+.+.+..+. +.+++.|++.+.
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~ 236 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGS 236 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCC
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCC
Confidence 86 21 11 3478888899999999999999999998875 888999998653
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.62 E-value=0.0002 Score=48.58 Aligned_cols=33 Identities=45% Similarity=0.738 Sum_probs=27.3
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhcCC
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIKDK 35 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~~~ 35 (283)
||+|++.|+|++... ++++|+||+.|++|++++
T Consensus 68 LR~L~~~gi~~~~~~--~~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 68 MRYLAHNGFFEIITK--EEESYALTVASELLVRGS 100 (101)
T ss_dssp HHHHHHTTSEEEEES--SSEEEEECHHHHTTSTTS
T ss_pred HHHHHhCCceeeecC--CCCeEecCHHHHHhhcCC
Confidence 689999999987542 157899999999998875
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.33 E-value=0.017 Score=47.03 Aligned_cols=103 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCC-CCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C-C-CCceEEEec-
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFP-GIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F-I-PPADAFLFK- 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~-~-p~~D~v~~~- 183 (283)
...+.+|||+.+|.|.=+..++.... +..++..|. +.-+...++ ..++.+...|... + . ..||.|++-
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 45678999999999999999888765 567889998 555544332 4567777777665 2 2 249999871
Q ss_pred -----cccc-------CCChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 -----LVFH-------GLGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 -----~vlh-------~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.+++ .+..++ -.++|+++.+.+|| ||.++-....+
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeeccC
Confidence 1221 122221 25788999999999 67766655444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.87 E-value=0.013 Score=43.08 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=57.7
Q ss_pred eEEEEcCCc--cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEecccccCCChhHHHH
Q 023384 121 SLVDVGGGN--GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDEDGLK 196 (283)
Q Consensus 121 ~vlDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~~~~ 196 (283)
+|+=||||. |.++..|.+..++.+++++|. ++.++.+++...+....-+... .....|+|+++- +.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhhh
Confidence 578899984 445667777778889999999 7777777653333333333322 223589998854 5667889
Q ss_pred HHHHHHHhhcc
Q 023384 197 ILKKRRAAIAS 207 (283)
Q Consensus 197 iL~~~~~~L~p 207 (283)
+++.+.+.+++
T Consensus 78 vl~~l~~~~~~ 88 (171)
T d2g5ca2 78 IAKKLSYILSE 88 (171)
T ss_dssp HHHHHHHHSCT
T ss_pred hhhhhhccccc
Confidence 99999999998
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.0077 Score=49.47 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=41.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCC---CCCCeEEEEcCCCC
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLP---EADNLKYIAGDMFQ 172 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~rv~~~~~d~~~ 172 (283)
...+|||||.|.|.++..|+++.---++++++. +...+..+ +.++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 456899999999999999998742237888887 44433332 26789999999875
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.047 Score=43.71 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=68.0
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--CC-CceEEEec-
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--IP-PADAFLFK- 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~v~~~- 183 (283)
.....+|||+.+|.|.=+..++....+.+++..|. +.-+...++ ...+.....|... . .+ .||.|++-
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56678999999999999999999988889999998 444433222 2334444444443 1 22 49999872
Q ss_pred -----cccc-------CCChhH-------HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 184 -----LVFH-------GLGDED-------GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 184 -----~vlh-------~~~d~~-------~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
.++. .|+..+ -.+||+++.+.|+| ||+|+-....+
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS~ 233 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSV 233 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeecC
Confidence 2222 222221 26789999999999 67766655443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.04 Score=48.17 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=67.5
Q ss_pred hHHHHHHHhhhhhcCCCCeEEEEcCCccHHHHHHHHHCC------------------CCeEEEeec-hHHHhcCCC----
Q 023384 103 LTSFVVKAECKQIFEGLGSLVDVGGGNGSLSRIISEAFP------------------GIKCTVLDL-PHVVANLPE---- 159 (283)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~---- 159 (283)
++..+++ .+. .....+|+|-.||+|.++....+... .....++|+ +.+...++-
T Consensus 152 Iv~~mv~-ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l 228 (524)
T d2ar0a1 152 LIKTIIH-LLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 228 (524)
T ss_dssp HHHHHHH-HHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred hhHhhhh-ccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence 3444444 443 34457999999999999987665421 124789998 655443321
Q ss_pred -------CCCeEEEEcCCCC-C---CCCceEEEecccccCCC------------hhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 160 -------ADNLKYIAGDMFQ-F---IPPADAFLFKLVFHGLG------------DEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 160 -------~~rv~~~~~d~~~-~---~p~~D~v~~~~vlh~~~------------d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
...-.+..++.+. + .+.||+|+..=.+-.-. ...-...+.++.+.|+| ||++.+
T Consensus 229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---gGr~ai 305 (524)
T d2ar0a1 229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAV 305 (524)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc---cCcEEE
Confidence 1122455666665 2 23599999855442100 11123579999999999 798877
Q ss_pred Ee
Q 023384 217 ID 218 (283)
Q Consensus 217 ~d 218 (283)
+-
T Consensus 306 Il 307 (524)
T d2ar0a1 306 VV 307 (524)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.46 E-value=0.032 Score=46.56 Aligned_cols=91 Identities=10% Similarity=0.035 Sum_probs=64.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC---------------------CCCeEEEEcCCCC---
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE---------------------ADNLKYIAGDMFQ--- 172 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------------~~rv~~~~~d~~~--- 172 (283)
+..+|||..||+|..++..++..+..+++..|+ +..++.+++ ...+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 347999999999999999988888778999999 777765543 1234555555443
Q ss_pred CCC-CceEEEecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 173 FIP-PADAFLFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 173 ~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
... .||+|.+-- +.. ....|..+.++++. ||.|.|.
T Consensus 125 ~~~~~fDvIDiDP----fGs--~~pfldsAi~a~~~---~Gll~vT 161 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAKR---RGILGVT 161 (375)
T ss_dssp HSTTCEEEEEECC----SSC--CHHHHHHHHHHEEE---EEEEEEE
T ss_pred hhcCcCCcccCCC----CCC--cHHHHHHHHHHhcc---CCEEEEE
Confidence 122 399988743 233 24689999999997 5555554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.00 E-value=0.25 Score=36.15 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=60.6
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEc---CCCC--------CCC-CceEEE
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAG---DMFQ--------FIP-PADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~--------~~p-~~D~v~ 181 (283)
.+...+||-+|+| .|.++..+++..-..++++.|. ++.++.+++-.--.++.. |..+ .-+ ++|+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 4566899999977 4788888888875447999998 766666655211112221 1110 012 389887
Q ss_pred ecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 182 FKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 182 ~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
-.-- . ...++...+.|+| ||+++++-...+
T Consensus 106 d~vG-----~---~~~~~~a~~~l~~---~G~iv~~G~~~~ 135 (182)
T d1vj0a2 106 EATG-----D---SRALLEGSELLRR---GGFYSVAGVAVP 135 (182)
T ss_dssp ECSS-----C---TTHHHHHHHHEEE---EEEEEECCCCSC
T ss_pred ecCC-----c---hhHHHHHHHHhcC---CCEEEEEeecCC
Confidence 5431 1 1347788899999 799988875433
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.95 E-value=0.18 Score=36.70 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=59.7
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC------C-C-CceEEEeccc
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF------I-P-PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~------~-p-~~D~v~~~~v 185 (283)
.+...+||=+||| .|..+..+++.....++++.|. ++-++.+++-.-..++..+-.+. . + .+|+++-+--
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G 105 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 105 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence 5667889999976 4556667777776667888887 66676666522222333221110 1 2 3888776432
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
. ...++...+.++| +|+++++-.
T Consensus 106 -----~---~~~~~~~~~~~~~---~G~i~~~G~ 128 (174)
T d1f8fa2 106 -----S---PEILKQGVDALGI---LGKIAVVGA 128 (174)
T ss_dssp -----C---HHHHHHHHHTEEE---EEEEEECCC
T ss_pred -----c---HHHHHHHHhcccC---ceEEEEEee
Confidence 1 2567888999999 799888754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.93 E-value=0.2 Score=36.63 Aligned_cols=93 Identities=11% Similarity=-0.004 Sum_probs=62.1
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCC---------C-CceEEEec
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFI---------P-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~---------p-~~D~v~~~ 183 (283)
.+...+||=+|||. |..+..+++..-..++++.|. ++-.+.+++-.-..++...-.+.. + .+|+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 56678999999886 889999999887678899998 666666665222222221111110 1 37888764
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCC-cEEEEEee
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGER-GKVIIIDI 219 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~g-g~lli~d~ 219 (283)
.- . ...+....+.+++ | |+++++-.
T Consensus 106 ~G-----~---~~~~~~a~~~~~~---g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AG-----T---AQTLKAAVDCTVL---GWGSCTVVGA 131 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCT---TTCEEEECCC
T ss_pred cc-----c---chHHHHHHHHhhc---CCeEEEecCC
Confidence 42 2 2558888999998 5 88888764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.91 E-value=0.074 Score=38.54 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=51.2
Q ss_pred eEEEEcCC--ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccccCCChhHHHHH
Q 023384 121 SLVDVGGG--NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVFHGLGDEDGLKI 197 (283)
Q Consensus 121 ~vlDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~i 197 (283)
+|.=||+| -+.++..|.++ +.+++++|. ++.++.+++...+.. ..+..+...++|+|++.- ++....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~~~~DiIilav-----p~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDE-AGQDLSLLQTAKIIFLCT-----PIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSE-EESCGGGGTTCSEEEECS-----CHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccce-eeeecccccccccccccC-----cHhhhhhh
Confidence 46667776 33444555544 678999999 777776654222221 122223345689998743 67778899
Q ss_pred HHHHHHhhcc
Q 023384 198 LKKRRAAIAS 207 (283)
Q Consensus 198 L~~~~~~L~p 207 (283)
++++...+++
T Consensus 74 l~~l~~~l~~ 83 (165)
T d2f1ka2 74 LEKLIPHLSP 83 (165)
T ss_dssp HHHHGGGSCT
T ss_pred hhhhhhhccc
Confidence 9999999998
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.71 E-value=0.058 Score=39.35 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=57.4
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCC---CC-CCceEEEeccc-cc
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQ---FI-PPADAFLFKLV-FH 187 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~---~~-p~~D~v~~~~v-lh 187 (283)
.....+||-+|+| .|.++..+++.. +++++++|. ++.++.+++ .....+...+-.+ .. ..+|+++-.-. -+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6677899999987 677777777764 789999998 666666665 2221121111111 12 24898776422 22
Q ss_pred CCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 188 GLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 188 ~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
... +....+.|+| +|+++++-.
T Consensus 104 ~~~-------~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1piwa2 104 DID-------FNIMPKAMKV---GGRIVSISI 125 (168)
T ss_dssp TCC-------TTTGGGGEEE---EEEEEECCC
T ss_pred cch-------HHHHHHHhhc---cceEEEecc
Confidence 111 3456778999 799988763
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.32 E-value=0.092 Score=39.36 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=66.4
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-CC---------C-CceEEEe
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-FI---------P-PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~~---------p-~~D~v~~ 182 (283)
.+...+||.+|||. |..+..+++.....++++.|. ++.++.+++..-..++ +..+ ++ + .+|+++-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~--~~~~~~~~~~i~~~t~g~g~D~vid 100 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIAD--LSLDTPLHEQIAALLGEPEVDCAVD 100 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEE--TTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEE--eCCCcCHHHHHHHHhCCCCcEEEEE
Confidence 67788999999987 667778888887779999998 7777777652211111 2211 11 1 3788875
Q ss_pred cccc------cC-CChhHHHHHHHHHHHhhccCCCCcEEEEEeeecC
Q 023384 183 KLVF------HG-LGDEDGLKILKKRRAAIASNGERGKVIIIDIVIN 222 (283)
Q Consensus 183 ~~vl------h~-~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~ 222 (283)
.--. |. .......+.|+.+.++++| ||++.++-...+
T Consensus 101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~~ 144 (195)
T d1kola2 101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYVT 144 (195)
T ss_dssp CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCCS
T ss_pred CccccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecCC
Confidence 4321 10 1111123679999999999 899988875443
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=92.87 E-value=0.0096 Score=39.20 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=24.7
Q ss_pred CccccccCeeEeeccCCCCceEecchhcchhhc
Q 023384 1 MRLLVHSGCFKKTKVNGQEEAYGLTAASTLLIK 33 (283)
Q Consensus 1 Lr~L~~~g~l~~~~~~~~~~~y~~t~~~~~l~~ 33 (283)
||+|+++|+|+++++ +.+.|++|+.|+.|..
T Consensus 61 lr~L~a~gll~~~~d--~~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 61 VRHLTVVGVLEGGEK--QGRPLRPTRLGMLLAD 91 (92)
T ss_dssp HHHHHHTTSEECCCC---CCCCEECTTGGGGST
T ss_pred HHHHHHCCCeeeecC--CCceecccHHHHhccC
Confidence 689999999998862 1356899999988864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.38 E-value=0.22 Score=35.93 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=60.3
Q ss_pred cCCCCeEEEEcC--CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCC--------CC-CceEEEe
Q 023384 116 FEGLGSLVDVGG--GNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQF--------IP-PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~--------~p-~~D~v~~ 182 (283)
.....+||=+|| +.|..+..+++.....++++.|. ++-.+.+++ ... .++..+-.+. .+ .+|+++-
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 667789999995 46777777888877678999998 666666554 211 2233222211 12 3888877
Q ss_pred cccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 183 KLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
... . ...++...++++| ||+++++-.
T Consensus 104 ~~g-----~---~~~~~~a~~~l~~---~G~iv~~G~ 129 (170)
T d1jvba2 104 LNN-----S---EKTLSVYPKALAK---QGKYVMVGL 129 (170)
T ss_dssp SCC-----C---HHHHTTGGGGEEE---EEEEEECCS
T ss_pred ccc-----c---chHHHhhhhhccc---CCEEEEecc
Confidence 542 1 2456777889999 799888864
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.22 E-value=0.23 Score=39.62 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=50.5
Q ss_pred cCCCCeEEEEcCCccHHHHHHHHHC-CCCeEEEeec-hHHHhcCCC------CCCeEEEEcCCCC-C--C---CCceEEE
Q 023384 116 FEGLGSLVDVGGGNGSLSRIISEAF-PGIKCTVLDL-PHVVANLPE------ADNLKYIAGDMFQ-F--I---PPADAFL 181 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~rv~~~~~d~~~-~--~---p~~D~v~ 181 (283)
.....+|||+.+|.|.-+..++... ++.+++.+|+ +.-+...++ ..++.+...|+.. + . ..||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 4567899999999999999888764 5678999998 555544432 4678888888765 2 1 2489988
Q ss_pred ec
Q 023384 182 FK 183 (283)
Q Consensus 182 ~~ 183 (283)
+-
T Consensus 172 ~D 173 (293)
T d2b9ea1 172 LD 173 (293)
T ss_dssp EC
T ss_pred ec
Confidence 73
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.64 E-value=0.55 Score=33.55 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=57.0
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccc
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vl 186 (283)
.+...+||=+|+| .|..+..+++.. +.+++++|. ++.++.+++..-..++..+-.+. ...+|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 5667788889976 566666777776 589999999 66777666522223333222111 123455444322
Q ss_pred cCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 187 HGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 187 h~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
.. ..+....+.|+| +|+++++-
T Consensus 103 ---~~----~~~~~~~~~l~~---~G~iv~~G 124 (166)
T d1llua2 103 ---SN----SAFGQAIGMARR---GGTIALVG 124 (166)
T ss_dssp ---CH----HHHHHHHTTEEE---EEEEEECC
T ss_pred ---cc----hHHHHHHHHhcC---CcEEEEEE
Confidence 12 457788899999 79988875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.55 E-value=1.2 Score=31.67 Aligned_cols=93 Identities=11% Similarity=0.126 Sum_probs=60.2
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCC-----------CC-CceEE
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQF-----------IP-PADAF 180 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~-----------~p-~~D~v 180 (283)
.+...+||-+|+| .|.++..+++.. +.+++++|. ++-++.+++ .....+..-+..++ .+ .+|++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5667889999977 677777777765 579999998 677776665 22222222111111 12 37887
Q ss_pred EecccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 181 LFKLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 181 ~~~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
+-.-- . ...+....+.++| +|+++++-..
T Consensus 103 id~~g-----~---~~~~~~a~~~~~~---~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSG-----N---EKCITIGINITRT---GGTLMLVGMG 131 (170)
T ss_dssp EECSC-----C---HHHHHHHHHHSCT---TCEEEECSCC
T ss_pred eecCC-----C---hHHHHHHHHHHhc---CCceEEEecC
Confidence 76432 1 2457788889999 7998887643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.10 E-value=0.057 Score=39.36 Aligned_cols=92 Identities=11% Similarity=0.080 Sum_probs=57.0
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC----CCCCceEEEecccccCC
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ----FIPPADAFLFKLVFHGL 189 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~----~~p~~D~v~~~~vlh~~ 189 (283)
.+...+||=+|+| .|.++..+++.. +.+.++.|. ++..+.+++..--.++..+-.. ....+|+++-..-
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g---- 102 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA---- 102 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS----
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeee----
Confidence 6677888889876 577888888876 677778887 5555555541111222211111 1124898876432
Q ss_pred ChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 190 GDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 190 ~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
.+ ..++...+.+++ +|+++++-.
T Consensus 103 -~~---~~~~~~~~~l~~---~G~iv~~G~ 125 (168)
T d1uufa2 103 -AP---HNLDDFTTLLKR---DGTMTLVGA 125 (168)
T ss_dssp -SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred -cc---hhHHHHHHHHhc---CCEEEEecc
Confidence 11 235677789999 799888754
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=1.8 Score=30.86 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=60.5
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC----------CC-CceEEEe
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF----------IP-PADAFLF 182 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~----------~p-~~D~v~~ 182 (283)
.+...+|+=+|+|. |..+..+++.....++++.|. ++-++.+++-.--.++..+-.++ .+ .+|+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 56678899999875 555566677665558999998 77777766521111222211111 12 3788776
Q ss_pred cccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 183 KLVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 183 ~~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
..- . ...++...+.+++ ||+++++-...
T Consensus 104 ~~G-----~---~~~~~~a~~~~~~---gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG-----A---EASIQAGIYATRS---GGTLVLVGLGS 131 (171)
T ss_dssp CSC-----C---HHHHHHHHHHSCT---TCEEEECSCCC
T ss_pred ccC-----C---chhHHHHHHHhcC---CCEEEEEecCC
Confidence 442 2 2568888999999 79998887533
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.66 E-value=0.73 Score=33.12 Aligned_cols=93 Identities=10% Similarity=0.030 Sum_probs=59.3
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCC--CC-----CC-CceEEEeccc
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMF--QF-----IP-PADAFLFKLV 185 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~--~~-----~p-~~D~v~~~~v 185 (283)
..+..+||-+|+| .|..+..+++..-..++++.|. ++-++.+++.....++..+-. +. -+ .+|+++-..-
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 4566889999976 4555567777776678899998 666666655323333332211 10 11 3788776442
Q ss_pred ccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 186 FHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
. ...++...+.+++ ||+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~---~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGR---MGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEE---EEEEEECCC
T ss_pred -----c---chHHHHHHHHHhC---CCEEEEEeC
Confidence 2 2457888899999 799998763
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.49 E-value=1.1 Score=32.17 Aligned_cols=133 Identities=13% Similarity=-0.011 Sum_probs=71.3
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEc-CCCCCC--------C-CceEEEec
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAG-DMFQFI--------P-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~-d~~~~~--------p-~~D~v~~~ 183 (283)
.+...+||=+|+| .|..+..+++..-..++++.|. ++-.+.+++.....++.. +-.+.. + .+|+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 5677889999875 5556667788877789999998 666666655222222221 111111 1 48988775
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHH
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFF 260 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 260 (283)
.--. ..++.....+++ +++.+++-...+...... .................|..+..+++.++++
T Consensus 106 ~G~~--------~~~~~a~~~~~~---~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~i~Gs~~G~~~~~~~~~~li~ 170 (176)
T d2jhfa2 106 IGRL--------DTMVTALSCCQE---AYGVSVIVGVPPDSQNLS-MNPMLLLSGRTWKGAIFGGFKSKDSVPKLVA 170 (176)
T ss_dssp SCCH--------HHHHHHHHHBCT---TTCEEEECSCCCTTCCEE-ECTHHHHTTCEEEECSGGGCCHHHHHHHHHH
T ss_pred CCch--------hHHHHHHHHHhc---CCcceEEecCCCCccccc-ccHHHHhCCCEEEEEEEeCCCHHHHHHHHHH
Confidence 5432 445667777887 444444443333322211 0001112223322223344455777877765
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.26 E-value=0.84 Score=33.07 Aligned_cols=134 Identities=10% Similarity=-0.019 Sum_probs=74.0
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-CCCeEEEEcCCCCC--------CC-CceEEEec
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-ADNLKYIAGDMFQF--------IP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~rv~~~~~d~~~~--------~p-~~D~v~~~ 183 (283)
.+...+||=+|+| .|..+..+++..-..+++++|. ++-++.+++ .....+-.-|.... .+ .+|+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 5667889999976 5566667777776678999999 888888776 22222211111111 12 38887765
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCCCccchhhhhhhhhcccccccccCCccCCHHHHHHHHHH
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINAEEEEHELTETKFLFDIVMSVNATGKERTESEWAKLFFD 261 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 261 (283)
..- . ..++.....+.+ + +|+++++-.......... ................|......++.++++.
T Consensus 107 ~g~-----~---~~~~~a~~~~~~-~-~G~~v~vG~~~~~~~~~~--~~~~~~~~~~i~Gs~~G~~~~~~dip~li~~ 172 (176)
T d1d1ta2 107 IGH-----L---ETMIDALASCHM-N-YGTSVVVGVPPSAKMLTY--DPMLLFTGRTWKGCVFGGLKSRDDVPKLVTE 172 (176)
T ss_dssp SCC-----H---HHHHHHHTTSCT-T-TCEEEECSCCCTTCCEEE--CTHHHHTTCEEEECSGGGCCHHHHHHHHHHH
T ss_pred CCc-----h---HHHHHHHHHhhc-C-CeEEEEEEccccccccCC--CHHHHhCCCEEEEEEEeCCCcHHHHHHHHHH
Confidence 431 1 334555555654 1 588888765433332211 0111222233333334555567777777653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.95 E-value=0.69 Score=32.92 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=53.8
Q ss_pred cCCCCeEEEEcCCccH-HHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCC-C--------CCCceEEEecc
Q 023384 116 FEGLGSLVDVGGGNGS-LSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQ-F--------IPPADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~-~--------~p~~D~v~~~~ 184 (283)
.+...+||=.|+|.-. .+..+++. .+.++++.|. ++-++.+++-.--.++ |..+ + .++.|.++...
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~ 101 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVV--NPLKEDAAKFMKEKVGGVHAAVVTA 101 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEE--CTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceec--ccccchhhhhcccccCCCceEEeec
Confidence 6667888889977544 44445554 5678999997 6666665541111111 1211 1 12345554433
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDI 219 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~ 219 (283)
+ . ...+....++|+| +|+++++-.
T Consensus 102 ~----~----~~~~~~a~~~l~~---~G~i~~~g~ 125 (168)
T d1rjwa2 102 V----S----KPAFQSAYNSIRR---GGACVLVGL 125 (168)
T ss_dssp C----C----HHHHHHHHHHEEE---EEEEEECCC
T ss_pred C----C----HHHHHHHHHHhcc---CCceEeccc
Confidence 2 2 2457889999999 788888753
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=89.37 E-value=0.31 Score=40.11 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=28.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHC-------CCCeEEEeechHHH
Q 023384 117 EGLGSLVDVGGGNGSLSRIISEAF-------PGIKCTVLDLPHVV 154 (283)
Q Consensus 117 ~~~~~vlDvGgG~G~~~~~l~~~~-------p~~~~~~~D~~~~~ 154 (283)
+...+|||+|+|+|.++..+++.. ..++++.++..+.+
T Consensus 78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L 122 (365)
T d1zkda1 78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 122 (365)
T ss_dssp CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhH
Confidence 345689999999999999887754 23568888874443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.09 E-value=0.54 Score=32.25 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=51.5
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCCC
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGLG 190 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~ 190 (283)
+|+=+|+ |.++..+++.+ .+..++++|. ++.++.+.+.-.+.++.||..++ +..+|.++... +
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t-----~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT-----G 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----S
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC-----C
Confidence 4566665 67777776654 3578999999 88777654433678899999873 23588877732 3
Q ss_pred hhHHHHHHHHHHHhhcc
Q 023384 191 DEDGLKILKKRRAAIAS 207 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p 207 (283)
+++.-.+.....+.+.+
T Consensus 75 ~d~~N~~~~~~~k~~~~ 91 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGI 91 (132)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 33333345555666776
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=3.1 Score=29.57 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=57.8
Q ss_pred cCCCCeEEEEcC--CccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEc---CCCCCC-----C-CceEEEec
Q 023384 116 FEGLGSLVDVGG--GNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAG---DMFQFI-----P-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~~~-----p-~~D~v~~~ 183 (283)
+....+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++..--.++.. |+.+.+ + .+|+++-.
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 566789999985 6788888888876 578888776 655665554111122221 221111 2 38888764
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
. . ...++...++|+| +|+++.+-
T Consensus 105 ~-----g----~~~~~~~~~~l~~---~G~iv~~G 127 (174)
T d1yb5a2 105 L-----A----NVNLSKDLSLLSH---GGRVIVVG 127 (174)
T ss_dssp C-----H----HHHHHHHHHHEEE---EEEEEECC
T ss_pred c-----c----HHHHHHHHhccCC---CCEEEEEe
Confidence 2 1 1457888899999 79988874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.74 E-value=1.2 Score=31.75 Aligned_cols=92 Identities=14% Similarity=0.022 Sum_probs=55.8
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEc-CCCCC--------CC-CceEEEec
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAG-DMFQF--------IP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~-d~~~~--------~p-~~D~v~~~ 183 (283)
.+...+||=+||| .|..+..++++.-..++++.|. ++-.+.+++-.--.++.. +-.++ .+ .+|+++-.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 5667888888764 5667777888876678888888 666666665111122221 11111 12 38888774
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEe
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIID 218 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d 218 (283)
-- .+ ..++.....+++ |+.++++-
T Consensus 106 ~G-----~~---~~~~~~~~~~~~---g~~~~~v~ 129 (176)
T d2fzwa2 106 IG-----NV---KVMRAALEACHK---GWGVSVVV 129 (176)
T ss_dssp SC-----CH---HHHHHHHHTBCT---TTCEEEEC
T ss_pred CC-----CH---HHHHHHHHhhcC---CceeEEEE
Confidence 32 22 557778888888 56665554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=87.58 E-value=0.24 Score=36.01 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=49.9
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCC-------CCCeEE------EEcCCCCCCCCceEEEeccc
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPE-------ADNLKY------IAGDMFQFIPPADAFLFKLV 185 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~rv~~------~~~d~~~~~p~~D~v~~~~v 185 (283)
++|.=||+|.-..+.+..-.--+.+++++|. ++.++..++ ...... ...|..+.++++|++++.-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v- 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV- 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS-
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE-
Confidence 5788899986555544333323679999998 666554432 111111 1112111235689998853
Q ss_pred ccCCChhHHHHHHHHHHHhhcc
Q 023384 186 FHGLGDEDGLKILKKRRAAIAS 207 (283)
Q Consensus 186 lh~~~d~~~~~iL~~~~~~L~p 207 (283)
+......+++.+.+.|++
T Consensus 81 ----~~~~~~~~~~~i~~~l~~ 98 (184)
T d1bg6a2 81 ----PAIHHASIAANIASYISE 98 (184)
T ss_dssp ----CGGGHHHHHHHHGGGCCT
T ss_pred ----chhHHHHHHHHhhhccCC
Confidence 444567889999999998
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=87.57 E-value=0.22 Score=36.38 Aligned_cols=94 Identities=13% Similarity=0.008 Sum_probs=59.7
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEc---CCCCC---C--C-CceEEEecc
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAG---DMFQF---I--P-PADAFLFKL 184 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~---d~~~~---~--p-~~D~v~~~~ 184 (283)
.+...+||=+|||. |..+..+++..--.++++.|. ++-.+.+++..-..++.. ++.+. . + .+|+++-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 56677888899886 788888888764457999998 666666655111122211 11110 1 1 389887644
Q ss_pred cccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeee
Q 023384 185 VFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIV 220 (283)
Q Consensus 185 vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~ 220 (283)
-- ...++...+.++| +|+++++-..
T Consensus 105 g~--------~~~~~~a~~~~~~---~G~iv~~G~~ 129 (174)
T d1jqba2 105 GG--------SETLSQAVKMVKP---GGIISNINYH 129 (174)
T ss_dssp SC--------TTHHHHHHHHEEE---EEEEEECCCC
T ss_pred CC--------HHHHHHHHHHHhc---CCEEEEEeec
Confidence 32 1446788899999 7998887643
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=86.54 E-value=0.86 Score=31.00 Aligned_cols=81 Identities=16% Similarity=0.200 Sum_probs=52.6
Q ss_pred CCccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCCChhHHHHHH
Q 023384 127 GGNGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGLGDEDGLKIL 198 (283)
Q Consensus 127 gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~d~~~~~iL 198 (283)
||.|..+..+++.+.+-.++++|. ++..+... ...+.++.||..++ +..++.+++.. . +|.....++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--~--~d~~n~~~~ 80 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL--E--SDSETIHCI 80 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC--S--SHHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec--c--chhhhHHHH
Confidence 466889999999887777888887 66555443 35688999999883 23577777633 1 345545444
Q ss_pred HHHHHhhccCCCCcEEEE
Q 023384 199 KKRRAAIASNGERGKVII 216 (283)
Q Consensus 199 ~~~~~~L~p~~~gg~lli 216 (283)
.. .+.+.| ..+++.
T Consensus 81 ~~-~r~~~~---~~~iia 94 (129)
T d2fy8a1 81 LG-IRKIDE---SVRIIA 94 (129)
T ss_dssp HH-HHHHCS---SSCEEE
T ss_pred HH-HHHHCC---CceEEE
Confidence 44 455677 355444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.45 E-value=2.1 Score=28.95 Aligned_cols=85 Identities=8% Similarity=0.098 Sum_probs=50.1
Q ss_pred eEEEEcCCccHHHHHHHHHC--CCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCC-------CCCceEEEecccccCCC
Q 023384 121 SLVDVGGGNGSLSRIISEAF--PGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQF-------IPPADAFLFKLVFHGLG 190 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~v~~~~vlh~~~ 190 (283)
+++=+|+ |.++..+++.+ -+.+++++|. ++.++.++. .....+.+|..++ +.++|.+++... +
T Consensus 2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~-~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~ 74 (134)
T d2hmva1 2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS-YATHAVIANATEENELLSLGIRNFEYVIVAIG----A 74 (134)
T ss_dssp CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT-TCSEEEECCTTCTTHHHHHTGGGCSEEEECCC----S
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH-hCCcceeeecccchhhhccCCccccEEEEEcC----c
Confidence 4555555 56666665554 3678999999 888888775 3345677888774 224777666331 2
Q ss_pred hhHHHHHHHHHHHhhccCCCCcEEEE
Q 023384 191 DEDGLKILKKRRAAIASNGERGKVII 216 (283)
Q Consensus 191 d~~~~~iL~~~~~~L~p~~~gg~lli 216 (283)
++....+...+++.+.. .+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~----~~iia 96 (134)
T d2hmva1 75 NIQASTLTTLLLKELDI----PNIWV 96 (134)
T ss_dssp CHHHHHHHHHHHHHTTC----SEEEE
T ss_pred hHHhHHHHHHHHHHcCC----CcEEe
Confidence 33434444444454443 56544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=86.31 E-value=4 Score=28.85 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=53.3
Q ss_pred cCCCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEEcCCCCCC---------C-CceEEEec
Q 023384 116 FEGLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIAGDMFQFI---------P-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~~d~~~~~---------p-~~D~v~~~ 183 (283)
.+...+||=+|+|. |..+..++++.-..++++.|. ++-++.+++..-..++..+-.+.. + .+|+++-.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~ 105 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 105 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence 56778899998887 555555677777778999998 666776665222223321111110 1 37888764
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEE
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIII 217 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~ 217 (283)
--- ...+......+++ |+.++++
T Consensus 106 ~G~--------~~~~~~a~~~~~~---g~~~~~~ 128 (175)
T d1cdoa2 106 VGN--------VGVMRNALESCLK---GWGVSVL 128 (175)
T ss_dssp SCC--------HHHHHHHHHTBCT---TTCEEEE
T ss_pred cCC--------HHHHHHHHHHhhC---CCcceeE
Confidence 431 1445666666666 4444443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.18 E-value=3.7 Score=29.24 Aligned_cols=98 Identities=9% Similarity=-0.034 Sum_probs=60.3
Q ss_pred cCCCCeEEEEcCC-ccHHHHHHHHHCCCCeEEEeec-hHHHhcCCCCCCeEEEE---cCCCC-C-----CC-CceEEEec
Q 023384 116 FEGLGSLVDVGGG-NGSLSRIISEAFPGIKCTVLDL-PHVVANLPEADNLKYIA---GDMFQ-F-----IP-PADAFLFK 183 (283)
Q Consensus 116 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~rv~~~~---~d~~~-~-----~p-~~D~v~~~ 183 (283)
.+...+||=+||| .|..+..+++..-..++++.|. ++-++.+++..-..++. .|... . -+ .+|+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 5667899999976 4556666777776778999998 66677776522222332 22111 0 11 37887764
Q ss_pred ccccCCChhHHHHHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 184 LVFHGLGDEDGLKILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 184 ~vlh~~~d~~~~~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
-.- ...+......+++ + +|+++++-...++
T Consensus 105 ~g~--------~~~~~~~~~~~~~-~-~G~~v~vG~~~~~ 134 (174)
T d1p0fa2 105 AGR--------IETMMNALQSTYC-G-SGVTVVLGLASPN 134 (174)
T ss_dssp SCC--------HHHHHHHHHTBCT-T-TCEEEECCCCCTT
T ss_pred CCC--------chHHHHHHHHHHH-h-cCceEEEEEecCc
Confidence 322 2456677777765 1 5888887754443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=85.21 E-value=0.18 Score=39.20 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=46.7
Q ss_pred CeEEEEcCCccHHHHHHHHHCCCCeEEEeec-hHHHh-------cCCC--------CCCeEEEEcCCCC---CC-CCceE
Q 023384 120 GSLVDVGGGNGSLSRIISEAFPGIKCTVLDL-PHVVA-------NLPE--------ADNLKYIAGDMFQ---FI-PPADA 179 (283)
Q Consensus 120 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~--------~~rv~~~~~d~~~---~~-p~~D~ 179 (283)
.+|||.=||.|..+..++.. +.+++.++. |.+.. .+.. ..|++++.+|..+ .. +.+|+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 48999999999999999988 578999998 43321 1111 3489999998655 22 24898
Q ss_pred EEecccc
Q 023384 180 FLFKLVF 186 (283)
Q Consensus 180 v~~~~vl 186 (283)
|++-=.+
T Consensus 168 IYlDPMF 174 (250)
T d2oyra1 168 VYLDPMF 174 (250)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8874433
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=84.45 E-value=2.6 Score=27.69 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHCCCCeEEEeec---hHHHhcCCCCCCeEEEEcCCCC-CCCCceEEEecccccCCChhH
Q 023384 118 GLGSLVDVGGGNGSLSRIISEAFPGIKCTVLDL---PHVVANLPEADNLKYIAGDMFQ-FIPPADAFLFKLVFHGLGDED 193 (283)
Q Consensus 118 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~~rv~~~~~d~~~-~~p~~D~v~~~~vlh~~~d~~ 193 (283)
..++||=||+|.-...++-.-.--+.++++++. ++....+. ..++++....+.. ++.++++++... +++
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~-~~~i~~~~~~~~~~dl~~~~lv~~at-----~d~- 83 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWAN-EGMLTLVEGPFDETLLDSCWLAIAAT-----DDD- 83 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHT-TTSCEEEESSCCGGGGTTCSEEEECC-----SCH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHh-cCCceeeccCCCHHHhCCCcEEeecC-----CCH-
Confidence 358999999987555443222223667777764 34433333 5789999988877 677788888754 232
Q ss_pred HHHHHHHHHHhhcc
Q 023384 194 GLKILKKRRAAIAS 207 (283)
Q Consensus 194 ~~~iL~~~~~~L~p 207 (283)
.+-+++++..++
T Consensus 84 --~~n~~i~~~a~~ 95 (113)
T d1pjqa1 84 --TVNQRVSDAAES 95 (113)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 223455555665
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=84.25 E-value=3.7 Score=32.04 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=61.4
Q ss_pred eEEEEcCCccHHHHHHHHHCCCCeEE-Eeec-hHHHhcCCCCCCeEEEEcCCCC-C---CCCceEEEecccccCCC----
Q 023384 121 SLVDVGGGNGSLSRIISEAFPGIKCT-VLDL-PHVVANLPEADNLKYIAGDMFQ-F---IPPADAFLFKLVFHGLG---- 190 (283)
Q Consensus 121 ~vlDvGgG~G~~~~~l~~~~p~~~~~-~~D~-~~~~~~a~~~~rv~~~~~d~~~-~---~p~~D~v~~~~vlh~~~---- 190 (283)
+|||+=||.|.+...+.++ +.+++ .+|+ +...+..+..-.-..+.+|+.+ + +|..|+++.......|+
T Consensus 2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~ 79 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGS 79 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSC
T ss_pred eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeecccccccccccc
Confidence 6999999999999998887 46654 7787 5444433321223557788877 2 56789999876666554
Q ss_pred -----hhH--HHHHHHHHHHhhccCCCCcEEEEEeeec
Q 023384 191 -----DED--GLKILKKRRAAIASNGERGKVIIIDIVI 221 (283)
Q Consensus 191 -----d~~--~~~iL~~~~~~L~p~~~gg~lli~d~~~ 221 (283)
|+. ..--+-++.+.++| +++++|.+.
T Consensus 80 ~~g~~d~r~~l~~~~~~~i~~~~P-----k~~~lENV~ 112 (324)
T d1dcta_ 80 LRGIDDPRGKLFYEYIRILKQKKP-----IFFLAENVK 112 (324)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHCC-----SEEEEEEEG
T ss_pred cccccccccchHHHHHHHHHhhCC-----ceeeccccc
Confidence 332 11123345667787 678888774
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=81.08 E-value=2.6 Score=27.03 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=45.3
Q ss_pred cCCCCeEEEEc-CCccHHHHHHHHHCCCCeEEEeec--hHHHhcCCCCCCeEEEEcCCCCCCCCceEEEecccc
Q 023384 116 FEGLGSLVDVG-GGNGSLSRIISEAFPGIKCTVLDL--PHVVANLPEADNLKYIAGDMFQFIPPADAFLFKLVF 186 (283)
Q Consensus 116 ~~~~~~vlDvG-gG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~rv~~~~~d~~~~~p~~D~v~~~~vl 186 (283)
+...++|.=|| ||+|-.+.+..-.--+.++++.|. .+..+...+ ..+.+..+...+.+++.|+|+.+..+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~-~Gi~v~~g~~~~~i~~~d~vV~S~AI 77 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ-AGAKIYIGHAEEHIEGASVVVVSSAI 77 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH-TTCEEEESCCGGGGTTCSEEEECTTS
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH-CCCeEEECCccccCCCCCEEEECCCc
Confidence 45567888888 778866644333334789999997 333333332 35666665554455678999998876
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.59 E-value=0.2 Score=36.33 Aligned_cols=97 Identities=13% Similarity=0.294 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHCCCCeEEEeec-hHHHhcCCC--CCCeEEEEcCCCC---CCCCceEEEecccccCCC
Q 023384 118 GLGSLVDVGGGN-GSLSRIISEAFPGIKCTVLDL-PHVVANLPE--ADNLKYIAGDMFQ---FIPPADAFLFKLVFHGLG 190 (283)
Q Consensus 118 ~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~rv~~~~~d~~~---~~p~~D~v~~~~vlh~~~ 190 (283)
...+|+=||+|. |..++..++.. ..+++++|. ++.++..+. ..++++...+-.. .+..+|+++..-.+ +
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali---p 106 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV---P 106 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC---T
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec---C
Confidence 357999999995 56666666665 689999999 777766554 4455554433221 23468999886644 2
Q ss_pred hhHHH-HHHHHHHHhhccCCCCcEEEEEeeecCC
Q 023384 191 DEDGL-KILKKRRAAIASNGERGKVIIIDIVINA 223 (283)
Q Consensus 191 d~~~~-~iL~~~~~~L~p~~~gg~lli~d~~~~~ 223 (283)
-..+. -|-++..+.||| |+ +|+|...+.
T Consensus 107 G~~aP~lIt~~mv~~Mk~---GS--VIVDvaidq 135 (168)
T d1pjca1 107 GRRAPILVPASLVEQMRT---GS--VIVDVAVDQ 135 (168)
T ss_dssp TSSCCCCBCHHHHTTSCT---TC--EEEETTCTT
T ss_pred CcccCeeecHHHHhhcCC---Cc--EEEEeecCC
Confidence 22222 234677889999 55 567766544
|