Citrus Sinensis ID: 023390

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR
ccHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccccccccccccccEEEEEcccccccccccccccHHHHHcccccEEEEEEEcEEEEEcEEEEEccccccccccccEEEEEccEEEEEEEcEEEEEccEEEccccccccccccccccccccccccccEEEEccccEEEEEcccccccccccEEEEEcccEEEEEEEEEEccccEEEEccccccccccccEEEEEcccccccccccccc
cHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEEEcccEEEEEccccccccEEEEEccccccccccccEEEEEEccccccccccccc
MAIPLLLWLLLCLLaptfissspvqdpelVVEEVHKSINASrrnlgflscgtgnpiddcwrcdpkweeNRQQLADCAIGfgkqaiggkdgkiyvvtdsgdddpvnpkpgtlryaviqdepLWIIFARDMVITLKEELIMNSFKtidgrgasvhiaggpcitvQYVTNIIIHGinihdckrggnanvrdspshygwrtisdgdgvsifggSHVWvdhcslsncndglidaihgstaitisnnymthhnkvmllghsdtftqdkNMQVTIAFNHFGEglvqrmpr
MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINasrrnlgflscGTGNPIDDCWRCDPKWEENRQQLADCAIGFgkqaiggkDGKIYVVTdsgdddpvnpkpGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHfgeglvqrmpr
MAIPlllwlllcllAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR
**IPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTD***********GTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGL******
*AIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVH******************NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMP*
MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR
MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLV*****
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iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAIPLLLWLLLCLLAPTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query283 2.2.26 [Sep-21-2011]
Q9FXD8 408 Probable pectate lyase 5 yes no 0.946 0.656 0.888 1e-142
Q93Z25 432 Probable pectate lyase 22 no no 0.992 0.650 0.809 1e-137
Q9C5M8 408 Probable pectate lyase 18 no no 0.961 0.666 0.833 1e-130
O24554 401 Pectate lyase OS=Zinnia e N/A no 0.982 0.693 0.758 1e-118
Q944R1 470 Probable pectate lyase 15 no no 0.954 0.574 0.674 1e-116
Q9LJ42 440 Probable pectate lyase 10 no no 0.918 0.590 0.740 1e-116
Q9LTZ0 412 Putative pectate lyase 11 no no 0.975 0.669 0.747 1e-115
Q9M8Z8 416 Probable pectate lyase 8 no no 1.0 0.680 0.666 1e-115
P24396 404 Probable pectate lyase P1 N/A no 0.925 0.648 0.768 1e-113
Q940Q1 431 Probable pectate lyase 1 no no 0.918 0.603 0.696 1e-111
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function desciption
 Score =  503 bits (1296), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 238/268 (88%), Positives = 254/268 (94%)

Query: 16  PTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLAD 75
           PTFI+S+PV +PELVV+EV++ INASRRNLG LSCGTGNPIDDCWRCDPKWE+NRQ+LAD
Sbjct: 22  PTFIASTPVSEPELVVQEVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLAD 81

Query: 76  CAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLKE 135
           CAIGFGK AIGG+DGKIYVVTDS D D VNPKPGTLR+AVIQDEPLWIIFARDMVI LKE
Sbjct: 82  CAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKE 141

Query: 136 ELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGW 195
           ELIMNSFKTIDGRGASVHIAGG CITVQYVTNIIIHG+NIHDCKR GNA VRDSPSHYGW
Sbjct: 142 ELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYGW 201

Query: 196 RTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHS 255
           RT SDGD VSIFGGSHVWVDHCSLSNC DGLIDAIHGSTAITISNNY++HHNKVMLLGHS
Sbjct: 202 RTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGHS 261

Query: 256 DTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
           D++T+DKNMQVTIAFNHFGEGLVQRMPR
Sbjct: 262 DSYTRDKNMQVTIAFNHFGEGLVQRMPR 289

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9C5M8|PLY18_ARATH Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2 Back     alignment and function description
>sp|O24554|PLY_ZINEL Pectate lyase OS=Zinnia elegans PE=1 SV=1 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q9LJ42|PLY10_ARATH Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|P24396|PLY18_SOLLC Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1 Back     alignment and function description
>sp|Q940Q1|PLY1_ARATH Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
14289169 409 pectate lyase [Salix gilgiana] 0.950 0.657 0.921 1e-148
225424562 403 PREDICTED: probable pectate lyase 5 [Vit 0.943 0.662 0.925 1e-145
356563159 406 PREDICTED: probable pectate lyase 22 iso 0.946 0.660 0.9 1e-143
345104287 411 pectate lyase [Gossypium schwendimanii] 0.936 0.644 0.909 1e-142
363806820 406 uncharacterized protein LOC100779940 pre 0.946 0.660 0.892 1e-142
225456814 458 PREDICTED: probable pectate lyase 5-like 0.946 0.585 0.888 1e-141
297733652 403 unnamed protein product [Vitis vinifera] 0.946 0.665 0.888 1e-141
127464581312 pectate lyase precursor [Glycine max] 0.946 0.858 0.896 1e-141
118484987 402 unknown [Populus trichocarpa] 1.0 0.703 0.915 1e-141
147781724 403 hypothetical protein VITISV_004734 [Viti 0.946 0.665 0.888 1e-141
>gi|14289169|dbj|BAB59066.1| pectate lyase [Salix gilgiana] Back     alignment and taxonomy information
 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/269 (92%), Positives = 261/269 (97%)

Query: 15  APTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLA 74
           AP FIS SPVQDPE+VVEEVH+SINASRR LGFLSCGTGNPIDDCWRCDPKW ENRQ+LA
Sbjct: 22  APNFISCSPVQDPEVVVEEVHRSINASRRKLGFLSCGTGNPIDDCWRCDPKWGENRQRLA 81

Query: 75  DCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK 134
           DCAIGFGK AIGG+DGKIY VTDSGDDDPVNPKPGTLRYAVIQDEPLWI+FARDMVI L+
Sbjct: 82  DCAIGFGKHAIGGRDGKIYAVTDSGDDDPVNPKPGTLRYAVIQDEPLWIVFARDMVIKLR 141

Query: 135 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYG 194
           EELIMNSFKTIDGRGASVHIAGGPCIT+QYVTNIIIHG+NIHDCKRGGNA+VRDSPSHYG
Sbjct: 142 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGVNIHDCKRGGNAHVRDSPSHYG 201

Query: 195 WRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGH 254
           WRT+SDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNY+THHNKVMLLGH
Sbjct: 202 WRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYLTHHNKVMLLGH 261

Query: 255 SDTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
           SD++ QDKNMQVTIAFNHFGEGLVQRMPR
Sbjct: 262 SDSYKQDKNMQVTIAFNHFGEGLVQRMPR 290

Source: Salix gilgiana

Species: Salix gilgiana

Genus: Salix

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424562|ref|XP_002285340.1| PREDICTED: probable pectate lyase 5 [Vitis vinifera] gi|296081403|emb|CBI16836.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563159|ref|XP_003549832.1| PREDICTED: probable pectate lyase 22 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|345104287|gb|AEN70965.1| pectate lyase [Gossypium schwendimanii] Back     alignment and taxonomy information
>gi|363806820|ref|NP_001242543.1| uncharacterized protein LOC100779940 precursor [Glycine max] gi|255641960|gb|ACU21247.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225456814|ref|XP_002275781.1| PREDICTED: probable pectate lyase 5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733652|emb|CBI14899.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|127464581|gb|ABO28477.1| pectate lyase precursor [Glycine max] Back     alignment and taxonomy information
>gi|118484987|gb|ABK94358.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147781724|emb|CAN76500.1| hypothetical protein VITISV_004734 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
TAIR|locus:2008550 408 AT1G67750 [Arabidopsis thalian 0.950 0.659 0.884 1.8e-133
TAIR|locus:2121914 408 AT4G24780 [Arabidopsis thalian 0.946 0.656 0.841 7.6e-128
TAIR|locus:2161992 432 AT5G63180 [Arabidopsis thalian 0.932 0.611 0.849 7.6e-128
TAIR|locus:2086656 412 AT3G27400 [Arabidopsis thalian 0.939 0.645 0.765 7.1e-116
TAIR|locus:2154384 417 AT5G48900 [Arabidopsis thalian 0.918 0.623 0.744 2.3e-110
TAIR|locus:2093131 440 AT3G24670 [Arabidopsis thalian 0.918 0.590 0.740 1.1e-108
TAIR|locus:2077622 416 AT3G07010 [Arabidopsis thalian 0.918 0.625 0.725 1.5e-108
TAIR|locus:2005487 470 AT4G13710 [Arabidopsis thalian 0.911 0.548 0.708 6.3e-108
TAIR|locus:2197808 431 AT1G04680 [Arabidopsis thalian 0.918 0.603 0.696 6.5e-106
TAIR|locus:2093761 452 AT3G24230 [Arabidopsis thalian 0.936 0.586 0.656 1.3e-100
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 238/269 (88%), Positives = 255/269 (94%)

Query:    15 APTFISSSPVQDPELVVEEVHKSINASRRNLGFLSCGTGNPIDDCWRCDPKWEENRQQLA 74
             +PTFI+S+PV +PELVV+EV++ INASRRNLG LSCGTGNPIDDCWRCDPKWE+NRQ+LA
Sbjct:    21 SPTFIASTPVSEPELVVQEVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLA 80

Query:    75 DCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK 134
             DCAIGFGK AIGG+DGKIYVVTDS D D VNPKPGTLR+AVIQDEPLWIIFARDMVI LK
Sbjct:    81 DCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLK 140

Query:   135 EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYG 194
             EELIMNSFKTIDGRGASVHIAGG CITVQYVTNIIIHG+NIHDCKR GNA VRDSPSHYG
Sbjct:   141 EELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYG 200

Query:   195 WRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGH 254
             WRT SDGD VSIFGGSHVWVDHCSLSNC DGLIDAIHGSTAITISNNY++HHNKVMLLGH
Sbjct:   201 WRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGH 260

Query:   255 SDTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
             SD++T+DKNMQVTIAFNHFGEGLVQRMPR
Sbjct:   261 SDSYTRDKNMQVTIAFNHFGEGLVQRMPR 289
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2121914 AT4G24780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093131 AT3G24670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197808 AT1G04680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FXD8PLY5_ARATH4, ., 2, ., 2, ., 20.88800.94690.6568yesno
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.75890.98230.6932N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.76890.92570.6485N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
smart00656190 smart00656, Amb_all, Amb_all domain 8e-58
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 4e-52
COG3866 345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 2e-19
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  182 bits (465), Expect = 8e-58
 Identities = 82/167 (49%), Positives = 101/167 (60%), Gaps = 28/167 (16%)

Query: 128 DMVITLK--EELIMNSFKTIDGRGASVHIAGGPCITVQYVTNIIIHGINIHDCKRGGNAN 185
           D+ ITL     +I+NS KTIDGRG+ V I GG  +T++ V+N+II  + IHD K      
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVYG-- 57

Query: 186 VRDSPSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC---------NDGLIDAIHGSTAI 236
                        SDGD +SI G S+VW+DH SLS C          DGLID  +GST +
Sbjct: 58  -------------SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 237 TISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
           TISNNY  +H KVMLLGHSD+ T D  M+VTIA N+FG  L QR PR
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPR 150

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 283
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 98.57
PLN02155 394 polygalacturonase 98.27
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 98.26
PLN03003 456 Probable polygalacturonase At3g15720 98.22
PLN02218 431 polygalacturonase ADPG 98.2
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 98.16
PLN02793 443 Probable polygalacturonase 98.16
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.97
PLN03010 409 polygalacturonase 97.94
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 97.88
PLN02218 431 polygalacturonase ADPG 97.86
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.84
PLN03003 456 Probable polygalacturonase At3g15720 97.73
PLN02155 394 polygalacturonase 97.7
PLN02793 443 Probable polygalacturonase 97.54
PLN03010 409 polygalacturonase 97.46
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.36
PLN02480343 Probable pectinesterase 97.33
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.2
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 97.2
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.08
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 97.05
PLN02197 588 pectinesterase 96.87
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.58
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.41
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 96.37
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.37
PLN02176340 putative pectinesterase 96.23
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.65
PLN02682369 pectinesterase family protein 95.6
PLN02432293 putative pectinesterase 95.6
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 95.13
PLN02665 366 pectinesterase family protein 94.97
PLN02634359 probable pectinesterase 94.93
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.9
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 94.76
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 94.73
PLN02301 548 pectinesterase/pectinesterase inhibitor 94.64
PLN02304379 probable pectinesterase 94.61
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 94.58
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 94.58
PLN02916 502 pectinesterase family protein 94.34
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.31
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 94.17
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 94.11
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 94.09
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 93.97
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 93.97
PLN02313 587 Pectinesterase/pectinesterase inhibitor 93.9
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 93.84
PLN02773317 pectinesterase 93.72
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 93.59
PLN02314 586 pectinesterase 93.41
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 93.4
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 93.4
PLN02497331 probable pectinesterase 93.25
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 93.17
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 92.94
PF0443156 Pec_lyase_N: Pectate lyase, N terminus; InterPro: 92.85
PLN02671359 pectinesterase 92.84
PRK10531 422 acyl-CoA thioesterase; Provisional 91.99
smart00656190 Amb_all Amb_all domain. 91.96
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 89.41
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 85.23
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 84.59
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 80.4
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-44  Score=335.18  Aligned_cols=174  Identities=33%  Similarity=0.488  Sum_probs=155.1

Q ss_pred             CCccCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEEeeeeEEEeC------ceEEecCCcEEEeeCCceEEe
Q 023390           82 KQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVITLK------EELIMNSFKTIDGRGASVHIA  155 (283)
Q Consensus        82 ~~ttGG~gG~v~~VT~~~d~d~~~~~pGtLr~av~~~~P~~IvF~~~g~I~L~------~~L~i~snkTI~G~ga~~~I~  155 (283)
                      .+||||.||++++|++.+|          |..+++..+|..+++-+.|+|.+.      .+|.+.|||||.|.|++++|.
T Consensus        46 ~GTtGG~~g~~v~v~ta~~----------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~  115 (345)
T COG3866          46 TGTTGGSGGDIVTVRTAND----------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLV  115 (345)
T ss_pred             CCcccCCCCcEEEEeeHHH----------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEE
Confidence            3899999999999999998          999999999995555556688887      567789999999999999999


Q ss_pred             CCCeEEEEeeccEEEEeeEEEecccCCCceeecCCCccccCcCCCCCeEEe-eCCceEEEeeeeeec--------CCCCc
Q 023390          156 GGPCITVQYVTNIIIHGINIHDCKRGGNANVRDSPSHYGWRTISDGDGVSI-FGGSHVWVDHCSLSN--------CNDGL  226 (283)
Q Consensus       156 ~G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~~~~g~r~~~~~DaI~I-~gs~nVWIDHcs~s~--------~~Dgl  226 (283)
                       |++|+|+.+.|||||||+|++...+.                ...|+|+| .+++|||||||+|+.        ..||+
T Consensus       116 -g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl  178 (345)
T COG3866         116 -GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL  178 (345)
T ss_pred             -eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence             66999999999999999999865321                12599999 579999999999999        78999


Q ss_pred             eecccCCceEEEEcceecccCeEEEeecCCCcC-CCCceeEEEEceEEcCCCCCCCCC
Q 023390          227 IDAIHGSTAITISNNYMTHHNKVMLLGHSDTFT-QDKNMQVTIAFNHFGEGLVQRMPR  283 (283)
Q Consensus       227 iDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~-~D~~~~VTih~N~F~~~~~~R~PR  283 (283)
                      +|+++++++||||||+|++|+|.+|+|.+|+.. +|...+||+||||| +|+.||+||
T Consensus       179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~Pr  235 (345)
T COG3866         179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPR  235 (345)
T ss_pred             EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCc
Confidence            999999999999999999999999999999854 46789999999999 699999998

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
1pxz_A 346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 1e-65
3zsc_A 340 Catalytic Function And Substrate Recognition Of The 5e-11
1bn8_A 420 Bacillus Subtilis Pectate Lyase Length = 420 9e-10
2bsp_A 420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 2e-09
3krg_A 399 Structural Insights Into Substrate Specificity And 4e-09
1vbl_A 416 Structure Of The Thermostable Pectate Lyase Pl 47 L 4e-09
2nzm_A 399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 6e-09
1ooc_A 361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 7e-09
1jrg_A 361 Crystal Structure Of The R3 Form Of Pectate Lyase A 7e-09
2qx3_A 330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 5e-06
2qxz_A 330 Pectate Lyase R236f From Xanthomonas Campestris Len 5e-06
2qy1_A 330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 5e-06
1pcl_A 355 Unusual Structural Features In The Parallel Beta-He 1e-05
3vmv_A 326 Crystal Structure Of Pectate Lyase Bsp165pela From 5e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/237 (51%), Positives = 163/237 (68%), Gaps = 13/237 (5%)
Query: 54  NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRY 113
           NPID CWR D  W++NR +LADCA+GFG   +GGK G  Y VT S DD+PVNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRY 60
Query: 114 AVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIA-GGPCITVQYVTNIIIHG 172
              +++ LWIIF+++M I LK  L +   KTIDGRGA VH+  GGPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120
Query: 173 INIHDCKRG--GNANVRDS----PSHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGL 226
           ++IH C     G+  V +S    P H       DGD +++   ++ W+DH SLS+C+DGL
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVH-----AQDGDAITMRNVTNAWIDHNSLSDCSDGL 175
Query: 227 IDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
           ID   GST ITISNN+  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR
Sbjct: 176 IDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR 232
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 1e-103
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 3e-73
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 1e-61
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 5e-59
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 3e-56
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 1e-51
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 1e-49
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 8e-48
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 5e-47
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 1e-40
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 2e-37
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 6e-07
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 7e-07
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  303 bits (778), Expect = e-103
 Identities = 119/232 (51%), Positives = 159/232 (68%), Gaps = 3/232 (1%)

Query: 54  NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRY 113
           NPID CWR D  W++NR +LADCA+GFG   +GGK G  Y VT + DD+PVNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 114 AVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHG 172
              +++ LWIIF+++M I LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 173 INIHDCKRGGNANVRDSPSHYGW-RTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIH 231
           ++IH C      +V  S S         DGD +++   ++ W+DH SLS+C+DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 232 GSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
           GST ITISNN+  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR 232
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
3vmv_A 326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
2qy1_A 330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.43
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.41
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 98.37
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.34
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.33
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.33
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 98.27
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.25
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.23
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 98.23
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.22
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.21
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 98.16
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.14
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 98.12
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.03
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 97.97
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 97.9
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.9
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.78
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 97.67
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.66
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.66
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 97.62
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.5
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.25
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.24
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 97.23
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.22
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 97.2
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 97.14
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 97.13
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.06
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 97.03
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 96.93
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.49
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 96.48
2inu_A 410 Insulin fructotransferase; right-handed parallel b 96.46
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 96.04
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.8
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.72
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 95.07
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 94.66
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 93.73
2inu_A410 Insulin fructotransferase; right-handed parallel b 93.52
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 92.86
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 92.81
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 92.77
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 92.54
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 92.22
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 89.34
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 88.64
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 88.6
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 88.18
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 87.64
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 86.79
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 84.12
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=3.4e-77  Score=567.95  Aligned_cols=230  Identities=50%  Similarity=0.945  Sum_probs=220.9

Q ss_pred             CCCCcceeecCccccccccccccCcccccCCccCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEEeeeeEEE
Q 023390           53 GNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIT  132 (283)
Q Consensus        53 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~d~~~~~pGtLr~av~~~~P~~IvF~~~g~I~  132 (283)
                      +||||+||||+|+|+.+||+||+||+|||++||||+||++|+||+++| ++++|+|||||+|+++++|+||+|+++|+|+
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d-~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~   79 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHH-cccccCcchhHHHhccCCCeEEEEcCCcEEe
Confidence            699999999999999999999999999999999999999999998866 7899999999999999999999999999999


Q ss_pred             eCceEEecCCcEEEeeCCceEEeC-CCeEEEEeeccEEEEeeEEEecccCCCcee-ecCCCccccCcCCCCCeEEeeCCc
Q 023390          133 LKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANV-RDSPSHYGWRTISDGDGVSIFGGS  210 (283)
Q Consensus       133 L~~~L~i~snkTI~G~ga~~~I~~-G~~i~i~~a~NVIIrnL~i~~~~~~g~~~i-r~~~~~~g~r~~~~~DaI~I~gs~  210 (283)
                      |+++|.|+|||||+|+|++++|.+ |+||+|++++|||||||+|+++.|.+++.| |++++|+|.+...++|||+|++++
T Consensus        80 l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~  159 (346)
T 1pxz_A           80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             cCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCc
Confidence            999999999999999999999996 689999999999999999999998888877 999999998888999999999999


Q ss_pred             eEEEeeeeeecCCCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEcCCCCCCCCC
Q 023390          211 HVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR  283 (283)
Q Consensus       211 nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~F~~~~~~R~PR  283 (283)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+...|+.|+||||||+|++++.|||||
T Consensus       160 nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr  232 (346)
T 1pxz_A          160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR  232 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTE
T ss_pred             eEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCcc
Confidence            9999999999999999999999999999999999999999999999887788899999999995599999997
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 283
d1pxza_ 346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-103
d1pe9a_ 361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-55
d1bn8a_ 399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 5e-43
d1qcxa_ 359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-42
d1idka_ 359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 3e-38
d1o88a_ 353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 6e-22
d1ia5a_ 339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-05
d1czfa_ 335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.001
d1nhca_ 336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 0.004
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  303 bits (778), Expect = e-103
 Identities = 119/232 (51%), Positives = 159/232 (68%), Gaps = 3/232 (1%)

Query: 54  NPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRY 113
           NPID CWR D  W++NR +LADCA+GFG   +GGK G  Y VT + DD+PVNP PGTLRY
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTST-DDNPVNPTPGTLRY 60

Query: 114 AVIQDEPLWIIFARDMVITLKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHG 172
              +++ LWIIF+++M I LK  L +   KTIDGRGA VH+   GPC+ ++ V+++I+H 
Sbjct: 61  GATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHS 120

Query: 173 INIHDCKRGGNANVRDSPS-HYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIH 231
           ++IH C      +V  S S         DGD +++   ++ W+DH SLS+C+DGLID   
Sbjct: 121 LHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180

Query: 232 GSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR 283
           GST ITISNN+  +H+KVMLLGH DT+  DK+M+VT+AFN FG    QRMPR
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR 232
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 99.97
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.42
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.31
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 98.19
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 98.06
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.97
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.89
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.88
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.83
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 97.73
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 97.57
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.32
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.23
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 97.2
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 96.63
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.62
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.23
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 95.16
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.11
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 94.53
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.35
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 93.1
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 91.69
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 91.15
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 90.64
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 88.6
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 87.52
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 86.28
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 80.17
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=2.3e-75  Score=552.36  Aligned_cols=230  Identities=51%  Similarity=0.941  Sum_probs=208.9

Q ss_pred             CCCCcceeecCccccccccccccCcccccCCccCCCCCeEEEEcCCCCCCCCCCCchhHHHhhhcCCCeEEEEeeeeEEE
Q 023390           53 GNPIDDCWRCDPKWEENRQQLADCAIGFGKQAIGGKDGKIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIT  132 (283)
Q Consensus        53 ~n~id~cwr~~~~w~~~r~~la~~a~GfG~~ttGG~gG~v~~VT~~~d~d~~~~~pGtLr~av~~~~P~~IvF~~~g~I~  132 (283)
                      .||||+||||+|+|+.+||+||+||+|||++||||+||+||+||+++| ++++|+|||||+|++|++||||||+++|+|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D-~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~   79 (346)
T d1pxza_           1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDD-NPVNPTPGTLRYGATREKALWIIFSQNMNIK   79 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCC-CTTSCCTTSHHHHHHCSSCEEEEESSCEEEC
T ss_pred             CCCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhh-ccccCCCccHHHHhhCCCCeEEEEeccEEEe
Confidence            499999999999999999999999999999999999999999999976 6889999999999999999999999999999


Q ss_pred             eCceEEecCCcEEEeeCCceEEeC-CCeEEEEeeccEEEEeeEEEecccCCCceeecCC-CccccCcCCCCCeEEeeCCc
Q 023390          133 LKEELIMNSFKTIDGRGASVHIAG-GPCITVQYVTNIIIHGINIHDCKRGGNANVRDSP-SHYGWRTISDGDGVSIFGGS  210 (283)
Q Consensus       133 L~~~L~i~snkTI~G~ga~~~I~~-G~~i~i~~a~NVIIrnL~i~~~~~~g~~~ir~~~-~~~g~r~~~~~DaI~I~gs~  210 (283)
                      |+++|.|+|||||+|||++++|.+ |.+|++++++|||||||+|+++.+..++.+...+ .+.+.....++|+|+|++++
T Consensus        80 l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~  159 (346)
T d1pxza_          80 LKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVT  159 (346)
T ss_dssp             CSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCE
T ss_pred             ccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCc
Confidence            999999999999999999999874 5569999999999999999998776555433332 23333455789999999999


Q ss_pred             eEEEeeeeeecCCCCceecccCCceEEEEcceecccCeEEEeecCCCcCCCCceeEEEEceEEcCCCCCCCCC
Q 023390          211 HVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPR  283 (283)
Q Consensus       211 nVWIDHcs~s~~~DgliDv~~gs~~ITISnn~f~~H~k~~LiG~sd~~~~D~~~~VTih~N~F~~~~~~R~PR  283 (283)
                      |||||||+|+|+.||++|+++++++||||||+|++|+|++|+|+++....+..++||||||+|.++..+|+||
T Consensus       160 nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~  232 (346)
T d1pxza_         160 NAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPR  232 (346)
T ss_dssp             EEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTE
T ss_pred             eEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCc
Confidence            9999999999999999999999999999999999999999999998877778899999999998677788885
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure