Citrus Sinensis ID: 023411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHEEEEEEEcccEEcccccccccccccEccccEEEEEEccccccEEEEccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHEEEEccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccccEEEEEEEcccHcHHHHHHHHHHHHccccccEEEEEEccccccEEcccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEcc
Coil and Loop (DISEMBL)
MASSLVANRFAFVLLKTEKTVAkfhsfplserlrlrpckfktknqfttnccvssahdekysnkqvisvtpplydyiLRNVREPEILRQLREEtagmrgsqmqvsPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVlpesgclvaCERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILngeassydfaFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKnlmedervsismvpigdgmticqkr
Flexible Loop (DISEMBL)
MASSLVANRFAFVLlktektvakfhsfplserlrlrpckfktknqfttnccvssahdekysnkqvisvtppLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYyeragvshkvkiKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNfnknlmedervsismvpigdgmticqkr
Low Complexity Region (SEG)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFElllqlllqIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered region (IsUnstruct)
****LVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEIL*********************AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGM******
Disordered Region (DISOPRED)
********RFAFVLLKTEKTVAKFHSFPLSERL************************************PPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered Region (DISEMBL)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREET***********PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered Region (DISPRO)
*ASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q9XGP7	252	Tricin synthase 1 OS=Oryz	no	no	0.804	0.900	0.423	4e-44
Q9C5D7	232	Probable caffeoyl-CoA O-m	no	no	0.723	0.879	0.427	7e-40
Q00719	221	O-methyltransferase MdmC	N/A	no	0.751	0.959	0.374	2e-39
Q9XGD5	264	Caffeoyl-CoA O-methyltran	N/A	no	0.726	0.776	0.423	1e-38
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.684	0.831	0.421	3e-37
Q86IC9	230	Probable caffeoyl-CoA O-m	yes	no	0.631	0.773	0.423	5e-37
P28034	241	Caffeoyl-CoA O-methyltran	N/A	no	0.730	0.854	0.384	5e-37
Q86IC8	231	Probable caffeoyl-CoA O-m	yes	no	0.631	0.770	0.423	5e-37
Q9C9W4	233	Tapetum-specific methyltr	no	no	0.769	0.931	0.386	8e-37
Q43237	242	Caffeoyl-CoA O-methyltran	no	no	0.726	0.847	0.405	8e-37

>sp|Q9XGP7|OMT15_ORYSJ Tricin synthase 1 OS=Oryza sativa subsp. japonica GN=ROMT-15 PE=1 SV=1

 Score =  178 bits (452), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/243 (42%), Positives = 146/243 (60%), Gaps = 16/243 (6%)

Query: 52  VSSAHDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQA 108
           + +AH +  S  + +  +  LY Y+L      REPE +R LR  T   +   MQ S D+A
Sbjct: 11  IKNAHSDIDSTNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEA 70

Query: 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
           QLL ML+++ GA+R IEVGV+TGYS LA AL LPE G +VA + D  S E+ + + E+AG
Sbjct: 71  QLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAG 130

Query: 169 VSHKVKIKHGLAADSLKALI----LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRV 224
           V+HKV  + G   + L  L+      G  +++DFAFVDA+K  Y +Y E LLQL   +RV
Sbjct: 131 VAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQL---VRV 187

Query: 225 GGIIVIDNVLWHGKVA---DQMVNDAK---TISIRNFNKNLMEDERVSISMVPIGDGMTI 278
           GG IV DN LW G VA   D  ++D     +++IR+ N  L  D R+ +  + I DG+TI
Sbjct: 188 GGHIVYDNTLWAGTVALPPDTPLSDLDRRFSVAIRDLNSRLAADPRIDVCQLAIADGITI 247

Query: 279 CQK 281
           C++
Sbjct: 248 CRR 250

Catalyzes the stepwise methylation of tricetin to its 3'-mono- and 3',5'-dimethyl ethers. No 3',4',5'-trimethylated ester derivatives are produced. Can use caffeoyl-CoA, 5-hydroxyferulic acid, luteolin, tricetin, quercetin, myrcetin and 7,8-dihydroxyflavone as substrates, but not naringenin, apigenin or kaempferol. The 2,3-double bond and the O-dihydroxyl group of the substrate are both required for catalytic activity of the enzyme.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 5

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  164 bits (415), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 18/222 (8%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE+LR+LR  T     + M  +PD  QL+ ML+ ++ A++ IEVGV
Sbjct: 15  LYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGV 74

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           +TGYS L  AL LPE G ++A + +  S E+     ++AGV HK+  K   A  +L  L+
Sbjct: 75  FTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELL 134

Query: 189 LNG-EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDA 247
            N      +DFAFVDA+K  Y  Y E L++L   I+VGGIIV DN LW G VA+    D+
Sbjct: 135 NNKVNEGGFDFAFVDADKLNYWNYHERLIRL---IKVGGIIVYDNTLWGGSVAEP---DS 188

Query: 248 KTISIR--------NFNKNLMEDERVSISMVPIGDGMTICQK 281
            T   R          NK L  D+RV IS   +GDG+TIC++
Sbjct: 189 STPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRR 230

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q00719|MDMC_STRMY O-methyltransferase MdmC OS=Streptomyces mycarofaciens GN=mdmC PE=3 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 138/219 (63%), Gaps = 7/219 (3%)

Query: 67  SVTPPLYDYILRNV--REPEILRQLREETAGMRGSQ-MQVSPDQAQLLAMLVQILGAQRC 123
           +++P L DY  R+V  RE  +LR+L + TA + G + MQ+ P++AQ L +L++++GA+R 
Sbjct: 6   TLSPALLDYA-RSVALREDGLLRELHDMTAQLPGGRAMQIMPEEAQFLGLLIRLVGARRV 64

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183
           +E+G +TGYS+L +A  LP  G +V C+   +   +   +++RAGV   + ++ G AA +
Sbjct: 65  LEIGTFTGYSTLCMARALPAGGRIVTCDISDKWPGIGAPFWQRAGVDGLIDLRIGDAART 124

Query: 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQM 243
           L  L       ++D  FVDA+K  Y  Y+E   Q L  +R GG++ IDN L+ G+VAD  
Sbjct: 125 LAELRERDGDGAFDLVFVDADKAGYLHYYE---QALALVRPGGLVAIDNTLFFGRVADPA 181

Query: 244 VNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
            +D  T+++R  N  L +DERV I+++ + DG+T+ ++R
Sbjct: 182 ADDPDTVAVRTLNDLLRDDERVDIALLTVADGITLARRR 220

4-O-methyltransferase for the lactone ring of midecamycin and other macrolide antibiotics.

Streptomyces mycarofaciens (taxid: 1949)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9XGD5|CAMT2_MAIZE Caffeoyl-CoA O-methyltransferase 2 OS=Zea mays GN=CCOAOMT2 PE=2 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/222 (42%), Positives = 134/222 (60%), Gaps = 17/222 (7%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++GA++ +E+GV
Sbjct: 46  LYQYILDTSVYPREPESMKELREITAKHPWNLMTTSADEGQFLNMLIKLIGAKKTMEIGV 105

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LPE G ++A + +  + E+      +AGV HK+  + G A   L  L+
Sbjct: 106 YTGYSLLATALALPEDGTILAMDINRENYELGLPCINKAGVGHKIDFREGPALPVLDDLV 165

Query: 189 LNGEA-SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDA 247
            + E   S+DFAFVDA+K  Y  Y E LL+L   +R GG+I  DN LW+G V   + +DA
Sbjct: 166 ADKEQHGSFDFAFVDADKDNYLNYHERLLKL---VRPGGLIGYDNTLWNGSVV--LPDDA 220

Query: 248 ---KTISI-RNF----NKNLMEDERVSISMVPIGDGMTICQK 281
              K I   R+F    N  L  D+RV I  +P+GDG+T+C++
Sbjct: 221 PMRKYIRFYRDFVLALNSALAADDRVEICQLPVGDGVTLCRR 262

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/211 (42%), Positives = 126/211 (59%), Gaps = 18/211 (8%)

Query: 81  REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138
           RE E+L++LR+ T    G  S+M+V  D+   L+MLV+I+ A+  IE+GV+TGYS L  A
Sbjct: 28  REHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTA 87

Query: 139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LNGEASSYD 197
           L LPE G + A + D  + EV  ++ ++AGV HK+   H   +D LKAL  L  +   +D
Sbjct: 88  LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH---SDGLKALDQLVNDKCEFD 144

Query: 198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIR---- 253
           FAF DA+K  Y  + E LL+L   ++VGGII  DN LW G VA+    D     +R    
Sbjct: 145 FAFADADKSSYVNFHERLLKL---VKVGGIIAFDNTLWFGFVAED--EDGVPEHMREYRA 199

Query: 254 ---NFNKNLMEDERVSISMVPIGDGMTICQK 281
               FNK L  D RV +S + IGDG+T+C++
Sbjct: 200 ALIEFNKKLALDPRVEVSQISIGDGITLCRR 230

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q86IC9|CAMT1_DICDI Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1

 Score =  154 bits (390), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 4/182 (2%)

Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M    +Q     +L+Q+L A++ I++GV+TG SSL  AL + + G +VAC+      + A
Sbjct: 50  MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTDYTQHA 109

Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLL 220
            K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K  Y  Y+EL L+L  
Sbjct: 110 LKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADKTGYDTYYELSLKL-- 167

Query: 221 QIRVGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSISMVPIGDGMTIC 279
            IR GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ +M+PI DG+T+ 
Sbjct: 168 -IRKGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTKTMLPIADGITLV 226

Query: 280 QK 281
            K
Sbjct: 227 TK 228

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P28034|CAMT_PETCR Caffeoyl-CoA O-methyltransferase OS=Petroselinum crispum PE=1 SV=1

 Score =  154 bits (390), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 131/221 (59%), Gaps = 15/221 (6%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 23  LYQYILETSVYPREPEAMKELREVTAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGV 82

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LP+ G ++A + +  + E+     E+AGV HK+  + G A   L  ++
Sbjct: 83  YTGYSLLATALALPDDGKILAMDINRENYEIGLPIIEKAGVGHKIDFREGPALPVLDHML 142

Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDA 247
            +G+   ++DF FVDA+K  Y  Y + L+ L   +++GG+I  DN LW+G VA Q  +  
Sbjct: 143 EDGKYHGTFDFVFVDADKDNYINYHKRLIDL---VKIGGLIGYDNTLWNGSVA-QPADAP 198

Query: 248 KTISIRNF-------NKNLMEDERVSISMVPIGDGMTICQK 281
               +R +       NK L  D R+ I M+P+GDG+T+C++
Sbjct: 199 MRKYVRYYRDFVIELNKALAADPRIEICMLPVGDGVTLCRR 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Petroselinum crispum (taxid: 4043)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q86IC8|CAMT2_DICDI Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1

 Score =  154 bits (390), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 4/182 (2%)

Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M    +Q     +L+Q+L A++ I++GV+TG SSL  AL + + G +VAC+      + A
Sbjct: 51  MLTQAEQCSFFKLLIQVLNAKKTIDIGVFTGLSSLTAALAMGDEGRVVACDVSTEYTQHA 110

Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLL 220
            K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K  Y  Y+EL L+L  
Sbjct: 111 LKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADKTGYDTYYELSLKL-- 168

Query: 221 QIRVGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSISMVPIGDGMTIC 279
            IR GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ S++PI DG+T+ 
Sbjct: 169 -IRKGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTKSLLPIADGITLI 227

Query: 280 QK 281
            K
Sbjct: 228 TK 229

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W4|TSM1_ARATH Tapetum-specific methyltransferase 1 OS=Arabidopsis thaliana GN=TSM1 PE=1 SV=2

 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 140/238 (58%), Gaps = 21/238 (8%)

Query: 57  DEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRG--SQMQVSPDQAQLL 111
           D +  +K ++  +  L  YI+      RE E+L++LRE T    G  S+M V  D++  L
Sbjct: 2   DGRLPDKGILK-SEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFL 60

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
           +MLV+I+ A+  IE+GV+TGYS   +AL LPE G + A + D     +  ++ ++AGV H
Sbjct: 61  SMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDH 120

Query: 172 KVKIKHGLAADSLKAL--ILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV 229
           K+     + +D+++ L  +LNGE   YDFAFVDA+K  Y  + E LL+L   ++VGGII 
Sbjct: 121 KINF---IQSDAVRGLDQLLNGEKQEYDFAFVDADKTNYVYFLEKLLKL---VKVGGIIA 174

Query: 230 IDNVLWHGKVADQMVND------AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
            DN LW G +  Q  N+      A   ++  FNK L  D RV I+ + IGDG+T+C++
Sbjct: 175 FDNTLWFGTLI-QKENEVPGHMRAYREALLEFNKILARDPRVEIAQISIGDGLTLCRR 231

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43237|CAMT_VITVI Caffeoyl-CoA O-methyltransferase OS=Vitis vinifera PE=2 SV=1

 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 131/222 (59%), Gaps = 17/222 (7%)

Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 24  LYQYILETSVYPREPESMKELRELTAQHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGV 83

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LP+ G ++A + +  + E+     ++AGV+HK+  K G A   L  +I
Sbjct: 84  YTGYSLLATALALPDDGKILAMDINKENYELGLPVIQKAGVAHKIDFKEGPALPVLDQMI 143

Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDA 247
            +G+   S+DF FVDA+K  Y  Y + L+ L   ++VGGII  DN LW+G V      DA
Sbjct: 144 EDGKYHGSFDFIFVDADKDNYLNYHKRLIDL---VKVGGIIGYDNTLWNGSVV--APPDA 198

Query: 248 K----TISIRNF----NKNLMEDERVSISMVPIGDGMTICQK 281
                    R+F    NK L  D R+ I M+P+GDG+T+C++
Sbjct: 199 PLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRR 240

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Vitis vinifera (taxid: 29760)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
255548155	290	o-methyltransferase, putative [Ricinus c	0.985	0.958	0.693	1e-109
297821086	278	O-methyltransferase family 3 protein [Ar	0.964	0.978	0.684	1e-109
15228652	278	S-adenosyl-L-methionine-dependent methyl	0.964	0.978	0.687	1e-109
225453692	280	PREDICTED: probable caffeoyl-CoA O-methy	0.797	0.803	0.824	1e-107
356525835	311	PREDICTED: O-methyltransferase mdmC-like	0.872	0.790	0.762	1e-107
388521881	314	unknown [Lotus japonicus]	0.925	0.831	0.684	1e-107
224068269	352	trans-caffeoyl-coa 3-o-methyltransferase	0.801	0.642	0.768	1e-102
356555143	242	PREDICTED: LOW QUALITY PROTEIN: probable	0.829	0.966	0.763	1e-101
334186194	352	S-adenosyl-L-methionine-dependent methyl	0.921	0.738	0.677	1e-100
449460066	293	PREDICTED: tricin synthase 1-like [Cucum	0.911	0.877	0.670	1e-99

>gi|255548155|ref|XP_002515134.1| o-methyltransferase, putative [Ricinus communis] gi|223545614|gb|EEF47118.1| o-methyltransferase, putative [Ricinus communis]

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/290 (69%), Positives = 232/290 (80%), Gaps = 12/290 (4%)

Query: 2   ASSLVANRFAFVLLKTEKTVAK-FHSFPLSERLRLRPCK--------FKTKNQFTTNCCV 52
           A +   NR +F+  +     A      PL   +  R CK          + +  +++  V
Sbjct: 4   ACAWAVNRCSFLACQRATFAATVIRGRPLRIAISFRECKSIRFARNCCCSSSSTSSDLAV 63

Query: 53  SSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLA 112
             A+D+KY NKQ+IS+TP LYDYIL NVREPEILRQLREETA M GSQMQVSPDQAQLLA
Sbjct: 64  VVANDDKYGNKQIISLTPCLYDYILSNVREPEILRQLREETAAMPGSQMQVSPDQAQLLA 123

Query: 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172
           MLVQILGA+RCIE+GVYTGYSSLA+ALVLPESGCLVACERDA SL VA+KYYERAGVSHK
Sbjct: 124 MLVQILGAKRCIELGVYTGYSSLAVALVLPESGCLVACERDANSLNVAQKYYERAGVSHK 183

Query: 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN 232
           V +KHG+AADSLK+LILNGE SSYDFAFVDAEK+M QEYFELLLQL   +RVGG+IV+DN
Sbjct: 184 VHVKHGMAADSLKSLILNGEESSYDFAFVDAEKKMNQEYFELLLQL---VRVGGVIVVDN 240

Query: 233 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           VLWHGKVAD ++NDA+T+SIRNFNK LMED RVSISMV IGDGMTIC+K+
Sbjct: 241 VLWHGKVADPLINDARTVSIRNFNKTLMEDNRVSISMVSIGDGMTICRKK 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821086|ref|XP_002878426.1| O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata] gi|297324264|gb|EFH54685.1| O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/288 (68%), Positives = 235/288 (81%), Gaps = 16/288 (5%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSA----- 55
           M++ L  NR +  + +T  T+    +  +     +R  KF   ++   NC ++ A     
Sbjct: 1   MSTGLALNRCSISVCRTAGTLLNRPTVSV-----VRSLKFS--HRLIGNCSIAPADPVVV 53

Query: 56  -HDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             D KY NK+VIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  AEDVKYGNKEVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+LGA+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YY+ AGVSHKV 
Sbjct: 114 VQLLGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYKLAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234
           +KHGLAA+SLK++I NGE SSYDFAFVDA+KRMYQ+YFELLLQL   +RVGG+IV+DNVL
Sbjct: 174 VKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQL---VRVGGVIVMDNVL 230

Query: 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           WHG+V D +VNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTIC+KR
Sbjct: 231 WHGRVTDPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228652|ref|NP_191759.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|6899898|emb|CAB71907.1| putative protein [Arabidopsis thaliana] gi|17979264|gb|AAL49948.1| AT3g62000/F21F14_170 [Arabidopsis thaliana] gi|20334816|gb|AAM16164.1| AT3g62000/F21F14_170 [Arabidopsis thaliana] gi|332646770|gb|AEE80291.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/288 (68%), Positives = 232/288 (80%), Gaps = 16/288 (5%)

Query: 1   MASSLVANRFAFVLLKT------EKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS 54
           M++ L  NR +  + +T        TV+   S   S RL +  C     + +        
Sbjct: 1   MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKFSRRL-IGNCSIAPADPYVV------ 53

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           A D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  ADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+L A+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVSHKV 
Sbjct: 114 VQMLAAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234
           +K GLAA+SLK++I NGE +SYDFAFVDA+KRMYQ+YFELLLQL   +RVGG+IV+DNVL
Sbjct: 174 VKQGLAAESLKSMIQNGEGASYDFAFVDADKRMYQDYFELLLQL---VRVGGVIVMDNVL 230

Query: 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           WHG+V+D MVNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTIC+KR
Sbjct: 231 WHGRVSDPMVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453692|ref|XP_002269070.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Vitis vinifera] gi|296089045|emb|CBI38748.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/228 (82%), Positives = 212/228 (92%), Gaps = 3/228 (1%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           + D KY NKQVI++TP LYDYIL NVREPEILRQLREETA MRGSQMQVSP+QAQLLAML
Sbjct: 56  SDDPKYGNKQVITITPRLYDYILTNVREPEILRQLREETANMRGSQMQVSPEQAQLLAML 115

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQILGA+RCIEVGVYTGYSSLAIALVLPESG LVACERD++SLEVAK+YY++AGVSHKV 
Sbjct: 116 VQILGAERCIEVGVYTGYSSLAIALVLPESGYLVACERDSKSLEVAKRYYKQAGVSHKVD 175

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234
           +KHGLA+D+LK+LILNGE+ SYDFAFVDAEKRM QEYFELLLQL   +R  G+IVIDNVL
Sbjct: 176 VKHGLASDALKSLILNGESGSYDFAFVDAEKRMNQEYFELLLQL---VRTRGVIVIDNVL 232

Query: 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           WHGKVAD +VNDA+T+SIRNFNKN+MED+RVSISMVPIGDG+TIC+KR
Sbjct: 233 WHGKVADPLVNDARTVSIRNFNKNIMEDKRVSISMVPIGDGITICRKR 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525835|ref|XP_003531527.1| PREDICTED: O-methyltransferase mdmC-like [Glycine max]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/253 (76%), Positives = 222/253 (87%), Gaps = 7/253 (2%)

Query: 33  LRLRPCKFKTKNQFTTNCCVSS---AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQL 89
            R R C+ + K +   +C  S    ++DE YSNKQV+S+TP LYDY+L+NVREPEILRQL
Sbjct: 63  FRFRECRCRWK-RIVRSCSTSEFVISNDENYSNKQVVSLTPRLYDYVLKNVREPEILRQL 121

Query: 90  REETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVA 149
           R+ETA MRGSQMQVSPDQAQLLAMLVQILGA+RCIEVGVYTGYSSLAIALVLPESG LVA
Sbjct: 122 RQETASMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAIALVLPESGHLVA 181

Query: 150 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ 209
           CERDA+SL+VAKKYY+ AGVSHKV +K GLA DSL++LILNGEA SYDFAF+DAEK+M +
Sbjct: 182 CERDAKSLDVAKKYYQLAGVSHKVDVKLGLAMDSLESLILNGEAGSYDFAFIDAEKKMNE 241

Query: 210 EYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM 269
           +YFELLLQL   +RVGG+IVIDNVLWHGKV+D +VND KTISIRNFN+ LMED+RVSISM
Sbjct: 242 KYFELLLQL---VRVGGLIVIDNVLWHGKVSDPLVNDPKTISIRNFNEKLMEDKRVSISM 298

Query: 270 VPIGDGMTICQKR 282
           VPIGDGMTIC+KR
Sbjct: 299 VPIGDGMTICRKR 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521881|gb|AFK49002.1| unknown [Lotus japonicus]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/295 (68%), Positives = 228/295 (77%), Gaps = 34/295 (11%)

Query: 15  LKTEKTVAKFHSFPLS-------------------------ERLRLRPCKFKTKNQFTTN 49
           L+  K    FHSFP S                            RLR CK+K   Q   +
Sbjct: 25  LRPVKVFTSFHSFPSSCTVNHRSLHVSTARWCCSASSCSSRCCFRLRGCKWK---QVVRS 81

Query: 50  CCVSS---AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPD 106
           C ++    A DE Y NKQV+S+TP LY Y+L+NVREPEILRQLREETA MRGSQMQVSPD
Sbjct: 82  CSITDIVIASDESYGNKQVVSLTPRLYGYVLKNVREPEILRQLREETASMRGSQMQVSPD 141

Query: 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 166
           QAQLLAMLVQILGA+RCIEVGVYTGYSSLAIALVLPESG LVA ERD +SL+VAKKYY+ 
Sbjct: 142 QAQLLAMLVQILGAERCIEVGVYTGYSSLAIALVLPESGRLVARERDPKSLDVAKKYYQL 201

Query: 167 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGG 226
           AGVSHKV +K GLA DSL++LILNGEA SYDFAF+DAEKRM Q+YFELLLQL   +RVGG
Sbjct: 202 AGVSHKVDVKLGLAEDSLESLILNGEAGSYDFAFIDAEKRMTQKYFELLLQL---VRVGG 258

Query: 227 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
           +IVIDNVLWHGKVAD +V+D+KTISIRNFN+ LMED+RVSISMVPIGDGMTIC+K
Sbjct: 259 VIVIDNVLWHGKVADPLVSDSKTISIRNFNQQLMEDKRVSISMVPIGDGMTICRK 313

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068269|ref|XP_002302692.1| trans-caffeoyl-coa 3-o-methyltransferase-like protein [Populus trichocarpa] gi|222844418|gb|EEE81965.1| trans-caffeoyl-coa 3-o-methyltransferase-like protein [Populus trichocarpa]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/242 (76%), Positives = 204/242 (84%), Gaps = 16/242 (6%)

Query: 45  QFTTNCCVSS-------------AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLRE 91
           +   NCC  S             A+DEKY NKQ IS+TP LYDYIL NVREPEILRQLRE
Sbjct: 44  RLARNCCSYSCSYPNPNDSAFVVANDEKYGNKQNISLTPRLYDYILSNVREPEILRQLRE 103

Query: 92  ETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE 151
           ETA MRGSQMQVSPDQAQLLAMLVQILGA+RCIE+GVYTGYSSLA+ALVLP+S CLVACE
Sbjct: 104 ETASMRGSQMQVSPDQAQLLAMLVQILGAKRCIELGVYTGYSSLAVALVLPDSACLVACE 163

Query: 152 RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY 211
           RDA+SLEVAKKYYE AGVSHKV +KHG+AAD LK+LILNGE+ SYDFAFVDAEKRM QEY
Sbjct: 164 RDAKSLEVAKKYYELAGVSHKVDVKHGMAADILKSLILNGESCSYDFAFVDAEKRMNQEY 223

Query: 212 FELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP 271
           FELLLQL   +RV G+IVIDNVLWHGKVAD +VNDAKT+SIR+FNKN+MED RVSISM  
Sbjct: 224 FELLLQL---VRVDGVIVIDNVLWHGKVADPLVNDAKTVSIRSFNKNIMEDPRVSISMTQ 280

Query: 272 IG 273
            G
Sbjct: 281 AG 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555143|ref|XP_003545896.1| PREDICTED: LOW QUALITY PROTEIN: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Glycine max]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/237 (76%), Positives = 205/237 (86%), Gaps = 3/237 (1%)

Query: 46  FTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSP 105
           F T      A D+ Y  KQV+S+TP LYDY+L+NVREPEILRQLR+ET  M GSQM VSP
Sbjct: 9   FITTTEFVIASDDNYGKKQVVSLTPFLYDYVLKNVREPEILRQLRQETTSMLGSQMXVSP 68

Query: 106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 165
           D AQLLAMLVQILGA++CIEVGVYTGYSSLA+ALVLPESG LVACERDA+SL+VAKKYY+
Sbjct: 69  DLAQLLAMLVQILGAEQCIEVGVYTGYSSLALALVLPESGRLVACERDAKSLDVAKKYYQ 128

Query: 166 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG 225
            AGVSHKV +K GLA DSL++LILNGEA SYDFAF DAEK+M ++YFELLLQL   +RVG
Sbjct: 129 LAGVSHKVDVKVGLAMDSLESLILNGEAGSYDFAFTDAEKKMNEKYFELLLQL---VRVG 185

Query: 226 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           G+IVIDNVLWHGKVAD +VND KT SIRNFN+ LMED+RVSISMVPIGDGMTIC+KR
Sbjct: 186 GLIVIDNVLWHGKVADPLVNDPKTFSIRNFNQKLMEDKRVSISMVPIGDGMTICRKR 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186194|ref|NP_001190157.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|332646771|gb|AEE80292.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/276 (67%), Positives = 220/276 (79%), Gaps = 16/276 (5%)

Query: 1   MASSLVANRFAFVLLKT------EKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS 54
           M++ L  NR +  + +T        TV+   S   S RL +  C     + +        
Sbjct: 1   MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKFSRRL-IGNCSIAPADPYVV------ 53

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           A D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  ADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQ+L A+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVSHKV 
Sbjct: 114 VQMLAAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVN 173

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234
           +K GLAA+SLK++I NGE +SYDFAFVDA+KRMYQ+YFELLLQL   +RVGG+IV+DNVL
Sbjct: 174 VKQGLAAESLKSMIQNGEGASYDFAFVDADKRMYQDYFELLLQL---VRVGGVIVMDNVL 230

Query: 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMV 270
           WHG+V+D MVNDAKTISIRNFNK LM+D+RVSISMV
Sbjct: 231 WHGRVSDPMVNDAKTISIRNFNKKLMDDKRVSISMV 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460066|ref|XP_004147767.1| PREDICTED: tricin synthase 1-like [Cucumis sativus]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/288 (67%), Positives = 219/288 (76%), Gaps = 31/288 (10%)

Query: 23  KFHSFP---LSERLRLRPC----KFKT-KNQFTTNCCV--------------------SS 54
           +F S+P   L++   L P       KT K  F+ +CCV                    S+
Sbjct: 9   RFMSYPQNLLTKFSSLSPVTAFPSIKTVKGAFSCSCCVVCQFNLDDFSSKKRHLERVYST 68

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             + K+SNKQ ISV   LYDYIL NVREPEIL QLREETA MRGS+MQVSPDQAQLLAML
Sbjct: 69  NSNGKFSNKQFISVDSELYDYILSNVREPEILAQLREETASMRGSKMQVSPDQAQLLAML 128

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
           VQILGA+RCIEVGVYTGYSSLA+ALVLPESG LVAC+RD   LEVAK+YYE AGVSHKV 
Sbjct: 129 VQILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACDRDLECLEVAKRYYELAGVSHKVD 188

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234
           ++HGLAAD+LK+LI NGEASSYDFAF+DAEKRM +EYFELLLQL   +RV G+IVIDNVL
Sbjct: 189 VRHGLAADTLKSLIANGEASSYDFAFIDAEKRMNEEYFELLLQL---VRVRGLIVIDNVL 245

Query: 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           W+GKVAD MV+D  T SIR  NK +MED+RV ISMVPIGDGMTICQKR
Sbjct: 246 WYGKVADPMVDDKMTDSIRRLNKKIMEDDRVGISMVPIGDGMTICQKR 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.865	0.841	0.709	2.6e-86
TIGR_CMR|CBU_0924	222	CBU_0924 "O-methyltransferase"	0.751	0.954	0.419	1.7e-43
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.769	0.812	0.429	2.5e-42
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.741	0.730	0.408	1.4e-41
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.804	0.900	0.407	3.3e-40
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.734	0.892	0.415	4.4e-36
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.769	0.931	0.373	1.7e-34
UNIPROTKB|A4IFU3	262	COMTD1 "COMTD1 protein" [Bos t	0.737	0.793	0.367	2.8e-34
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.783	0.853	0.377	4.6e-34
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.687	0.836	0.404	4.6e-34

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 178/251 (70%), Positives = 204/251 (81%)

Query:    33 LRL-RPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLRE 91
             +RL RP      N  T    +  A DEKY NK VIS+TP LYDY+L NVRE EIL+QLRE
Sbjct:    46 IRLNRPTDSVVGNCPTEASPLVMADDEKYGNKMVISLTPRLYDYVLNNVREHEILKQLRE 105

Query:    92 ETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE 151
             ETA    SQ+QVSPDQAQLLAMLV+ILGA+RCIEVGVYTGYSSLA+ALVLPESG LVAC+
Sbjct:   106 ETAI---SQIQVSPDQAQLLAMLVEILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACD 162

Query:   152 RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY 211
             +DA +LEVAK+YYE AGVSHKV +KHGLAA+SL ++I NGE SSYDFAF+DA+K MYQEY
Sbjct:   163 KDANALEVAKRYYELAGVSHKVTVKHGLAAESLMSMIQNGEESSYDFAFLDADKAMYQEY 222

Query:   212 FEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP 271
             FE        +RVGG+IVIDNVLWHG VAD  VND +TIS+RNFNK LM+D+RVSISMV 
Sbjct:   223 FESLLRL---VRVGGVIVIDNVLWHGWVADSTVNDERTISLRNFNKKLMDDQRVSISMVS 279

Query:   272 IGDGMTICQKR 282
             IGDGMTIC+KR
Sbjct:   280 IGDGMTICRKR 290

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TIGR_CMR|CBU_0924 CBU_0924 "O-methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 91/217 (41%), Positives = 146/217 (67%)

Query:    68 VTPPLYDYILR-NVREPEILRQLREETAGMRGSQ-MQVSPDQAQLLAMLVQILGAQRCIE 125
             +TP LY Y+L+ ++REP +L +LREET     +  MQ +P+QAQLLA+LV+++ A++ I+
Sbjct:     8 LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVID 67

Query:   126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185
             +G +TGYS++A+ L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++   A D+L 
Sbjct:    68 IGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 127

Query:   186 ALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVN 245
              LI  G+A  YD  ++DA+K     Y+E        +R GG+I +DNVL  G+VAD+   
Sbjct:   128 ELIHAGQAWQYDLIYIDADKANTDLYYEESLKL---LREGGLIAVDNVLRRGQVADEENQ 184

Query:   246 DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
                   IR FN+ + +DERV + ++PIGDG+T+ +K+
Sbjct:   185 SENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK 221

GO:0008171 "O-methyltransferase activity" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 95/221 (42%), Positives = 145/221 (65%)

Query:    62 NKQVISVTPPLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
             +K +I  + PL+ YIL  ++RE  IL++LR  TA     +M VS DQAQL+A L++++ A
Sbjct:    49 HKSIIGKSSPLWQYILDHSLREHPILKKLRLLTAEYPWGKMMVSCDQAQLMANLIKLIKA 108

Query:   121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
             ++ IEVGV TGY++L++AL LP++G ++AC+ +    ++ K  ++ AGV HK+ ++   A
Sbjct:   109 KKVIEVGVLTGYNALSMALALPDNGRVIACDINEDYAKIGKPLWKEAGVDHKIDLRIKPA 168

Query:   181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVA 240
               +L  L+  GEA ++DFAF+DA+K  Y EY+E        I+ GGII IDNVL  G V 
Sbjct:   169 TQTLDELLAGGEAETFDFAFIDADKESYNEYYEKCLRL---IKKGGIIAIDNVLRCGMVL 225

Query:   241 DQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
                 +D  T SI + N+ L+ D RV+ISM+P+GDG+T+  K
Sbjct:   226 KPRKDDLATQSIHHLNEKLVRDARVNISMIPMGDGVTLVFK 266

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 87/213 (40%), Positives = 140/213 (65%)

Query:    71 PLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
             PL  Y++ N +RE  +L +LR  T     + M V+ +QAQL+A L +++ A + IE+G+Y
Sbjct:    77 PLLQYVVNNSLREHPVLTKLRLRTMEDARNVMMVASEQAQLMANLAKLIEANKTIEIGLY 136

Query:   130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
             TGY++L++ALV+PE+G +VACE +   +++ K ++  AGV +K+ I+   A ++L  L+ 
Sbjct:   137 TGYNALSLALVVPENGRVVACEINEDYVKIGKPFFAEAGVENKIDIRLKPAVETLDELLS 196

Query:   190 NGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVNDAKT 249
              GEA  YDF F+DA+K+ Y+ Y+E        +R GGI+ IDNVLW G+V +   +D  +
Sbjct:   197 AGEAGMYDFVFIDADKKNYETYYEKSLQL---VRKGGIVAIDNVLWGGRVINPAEDDLSS 253

Query:   250 ISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
              +I   NK L +DER+ +SM+ +GDG+T+  KR
Sbjct:   254 QAIDKLNKKLHKDERIDLSMLTVGDGLTLAIKR 286

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 99/243 (40%), Positives = 142/243 (58%)

Query:    52 VSSAHDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQA 108
             + +AH +  S  + +  +  LY Y+L      REPE +R LR  T   +   MQ S D+A
Sbjct:    11 IKNAHSDIDSTNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEA 70

Query:   109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
             QLL ML+++ GA+R IEVGV+TGYS LA AL LPE G +VA + D  S E+ + + E+AG
Sbjct:    71 QLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAG 130

Query:   169 VSHKVKIKHGLAADSLKALILN----GEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRV 224
             V+HKV  + G   + L  L+      G  +++DFAFVDA+K  Y +Y E        +RV
Sbjct:   131 VAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQL---VRV 187

Query:   225 GGIIVIDNVLWHGKVA---DQMVNDAK---TISIRNFNKNLMEDERVSISMVPIGDGMTI 278
             GG IV DN LW G VA   D  ++D     +++IR+ N  L  D R+ +  + I DG+TI
Sbjct:   188 GGHIVYDNTLWAGTVALPPDTPLSDLDRRFSVAIRDLNSRLAADPRIDVCQLAIADGITI 247

Query:   279 CQK 281
             C++
Sbjct:   248 CRR 250

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 91/219 (41%), Positives = 125/219 (57%)

Query:    72 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
             LY YIL      REPE+LR+LR  T     + M  +PD  QL+ ML+ ++ A++ IEVGV
Sbjct:    15 LYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGV 74

Query:   129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
             +TGYS L  AL LPE G ++A + +  S E+     ++AGV HK+  K   A  +L  L+
Sbjct:    75 FTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEALPALDELL 134

Query:   189 LNG-EASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVNDA 247
              N      +DFAFVDA+K  Y  Y E        I+VGGIIV DN LW G VA+   +  
Sbjct:   135 NNKVNEGGFDFAFVDADKLNYWNYHERLIRL---IKVGGIIVYDNTLWGGSVAEPDSSTP 191

Query:   248 K-TISIRN----FNKNLMEDERVSISMVPIGDGMTICQK 281
             +  I ++      NK L  D+RV IS   +GDG+TIC++
Sbjct:   192 EWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRR 230

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 89/238 (37%), Positives = 136/238 (57%)

Query:    57 DEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRG--SQMQVSPDQAQLL 111
             D +  +K ++  +  L  YI+      RE E+L++LRE T    G  S+M V  D++  L
Sbjct:     2 DGRLPDKGILK-SEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFL 60

Query:   112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
             +MLV+I+ A+  IE+GV+TGYS   +AL LPE G + A + D     +  ++ ++AGV H
Sbjct:    61 SMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDH 120

Query:   172 KVKIKHGLAADSLKAL--ILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIV 229
             K+     + +D+++ L  +LNGE   YDFAFVDA+K  Y  + E        ++VGGII 
Sbjct:   121 KINF---IQSDAVRGLDQLLNGEKQEYDFAFVDADKTNYVYFLEKLLKL---VKVGGIIA 174

Query:   230 IDNVLWHGKVADQMVND------AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
              DN LW G +  Q  N+      A   ++  FNK L  D RV I+ + IGDG+T+C++
Sbjct:   175 FDNTLWFGTLI-QKENEVPGHMRAYREALLEFNKILARDPRVEIAQISIGDGLTLCRR 231

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|A4IFU3 COMTD1 "COMTD1 protein" [Bos taurus (taxid:9913)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 78/212 (36%), Positives = 127/212 (59%)

Query:    71 PLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
             PL+ Y+L R++RE   LR LR  T         ++ +QAQLLA L +++ A++ +++G +
Sbjct:    53 PLWQYLLSRSIREHPALRSLRLLTLEQPQGDSMMTREQAQLLANLARLIKAKKALDLGTF 112

Query:   130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
             TGYS+LA+AL LP +GC+V CE DA   E+ +  + +A   HK+ ++   A ++L  L+ 
Sbjct:   113 TGYSALALALALPPAGCVVTCEVDAGPPELGRPLWRQAEEEHKIDLRLKPALETLDELLA 172

Query:   190 NGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVNDAKT 249
              GEA ++D A VDA+K     Y+E        +R GG++ + +VL  G+V      D   
Sbjct:   173 AGEAGTFDVAVVDADKENCTAYYERCLQL---LRPGGVLAVLSVLCQGEVLQPKPQDKAA 229

Query:   250 ISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
               +RN N+ ++ D RV IS++P+GDG+T+  K
Sbjct:   230 QCVRNLNERILRDARVHISLLPLGDGLTLAFK 261

GO:0005739 "mitochondrion" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/236 (37%), Positives = 135/236 (57%)

Query:    56 HDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLA 112
             H E   +K ++  +  LY YIL      REPE +++LRE TA    + M  S D+ Q L 
Sbjct:    27 HQE-VGHKSLLQ-SDDLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLN 84

Query:   113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172
             ML++++ A+  +E+GVYTGYS LA AL LPE G ++A + +  + E+     E+AGV+HK
Sbjct:    85 MLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKAGVAHK 144

Query:   173 VKIKHGLAADSLKALILNGEA-SSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVID 231
             +  + G A   L  ++ + +   +YDF FVDA+K  Y  Y +        +++GG+I  D
Sbjct:   145 IDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDL---VKIGGVIGYD 201

Query:   232 NVLWHGKV-ADQMVNDAKTISI-RNF----NKNLMEDERVSISMVPIGDGMTICQK 281
             N LW+G V A       K +   R+F    NK L  D R+ I M+P+GDG+TIC++
Sbjct:   202 NTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRR 257

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 85/210 (40%), Positives = 124/210 (59%)

Query:    81 REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138
             RE E+L++LR+ T    G  S+M+V  D+   L+MLV+I+ A+  IE+GV+TGYS L  A
Sbjct:    28 REHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEIGVFTGYSLLTTA 87

Query:   139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LNGEASSYD 197
             L LPE G + A + D  + EV  ++ ++AGV HK+   H   +D LKAL  L  +   +D
Sbjct:    88 LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH---SDGLKALDQLVNDKCEFD 144

Query:   198 FAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVAD------QMVNDAKTIS 251
             FAF DA+K  Y  + E        ++VGGII  DN LW G VA+      + + + +   
Sbjct:   145 FAFADADKSSYVNFHERLLKL---VKVGGIIAFDNTLWFGFVAEDEDGVPEHMREYRAAL 201

Query:   252 IRNFNKNLMEDERVSISMVPIGDGMTICQK 281
             I  FNK L  D RV +S + IGDG+T+C++
Sbjct:   202 IE-FNKKLALDPRVEVSQISIGDGITLCRR 230

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BIG7	CMTD1_MOUSE	2, ., 1, ., 1, ., -	0.35	0.8262	0.8893	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766
4th Layer	2.1.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	1e-153
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	3e-83
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	1e-57
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	9e-52
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	4e-46
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	2e-14
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	1e-06
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-06
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	6e-06
PRK13943	322	PRK13943, PRK13943, protein-L-isoaspartate O-methy	4e-04

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  429 bits (1103), Expect = e-153
 Identities = 199/292 (68%), Positives = 234/292 (80%), Gaps = 24/292 (8%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS------ 54
           M++ L  NR +F + +T  T+    +  +   L+           F+     +       
Sbjct: 1   MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLK-----------FSRRLIGNCSIAPAD 49

Query: 55  ----AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQL 110
               A+D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQL
Sbjct: 50  PVVVANDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQL 109

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           LAMLVQILGA+RCIEVGVYTGYSSLA+ALVLPESGCLVACERD+ SLEVAK+YYE AGVS
Sbjct: 110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS 169

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230
           HKV +KHGLAA+SLK++I NGE SSYDFAFVDA+KRMYQ+YFELLLQL   +RVGG+IV+
Sbjct: 170 HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQL---VRVGGVIVM 226

Query: 231 DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           DNVLWHG+VAD +VNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTIC+KR
Sbjct: 227 DNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278

Length = 278

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  248 bits (635), Expect = 3e-83
 Identities = 95/203 (46%), Positives = 140/203 (68%), Gaps = 3/203 (1%)

Query: 80  VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIAL 139
           VRE EIL++LRE TA +  S MQ+SP++ Q L+ML++++GA+R +E+GV+TGYS LA AL
Sbjct: 5   VREHEILKELREATAKLPLSPMQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYSLLATAL 64

Query: 140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199
            LPE G + AC+ D  + E+   + ++AGV+ K+  + G A  +L+ L+ +     +DF 
Sbjct: 65  ALPEDGKITACDIDPEAYEIGLPFIQKAGVADKISFRLGDALPTLEELVKDKPLGEFDFI 124

Query: 200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNL 259
           FVDA+K  Y  Y+E LL+L+   +VGG+I IDN LW GKVA+      KT+ +R  NK L
Sbjct: 125 FVDADKSNYPNYYERLLELV---KVGGLIAIDNTLWFGKVAEPDDEVPKTVRVRELNKLL 181

Query: 260 MEDERVSISMVPIGDGMTICQKR 282
             DERV ISM+P+GDG+T+C++ 
Sbjct: 182 ASDERVEISMLPVGDGITLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  183 bits (467), Expect = 1e-57
 Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 12/225 (5%)

Query: 62  NKQVISVTPPLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
            +++ ++   LYDY+      EP  L    EE A   G  +   P+   LL +L ++ G 
Sbjct: 2   TQRMPNMDEDLYDYLEALIPGEPPALLAELEEFARENGVPIID-PETGALLRLLARLSGP 60

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL- 179
           +R +E+G   GYS+L +AL LP+ G L   ERD    E+A++    AGV  ++++  G  
Sbjct: 61  KRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120

Query: 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV 239
           A D L  L       S+D  F+DA+K  Y EY E  L LL   R GG+IV DNVL+ G+V
Sbjct: 121 ALDVLSRL----LDGSFDLVFIDADKADYPEYLERALPLL---RPGGLIVADNVLFGGRV 173

Query: 240 ADQMVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           AD  + DA+T    +R+FN  L+ED R    ++P+GDG+ + +KR
Sbjct: 174 ADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR 218

Length = 219

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  169 bits (429), Expect = 9e-52
 Identities = 87/208 (41%), Positives = 126/208 (60%), Gaps = 10/208 (4%)

Query: 81  REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA 138
           RE E+L++LRE T    G  S+M+V  D+   L+MLV+I+ A+  +E+GV+TGYS L  A
Sbjct: 28  REHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTA 87

Query: 139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198
           L LPE G + A + D  + EV  ++ ++AGV HK+      A  +L  L+ N     +DF
Sbjct: 88  LALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147

Query: 199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVA---DQMVNDAKTI--SIR 253
           AFVDA+K  Y  + E LL+L   ++VGGII  DN LW G VA   D++    +    ++ 
Sbjct: 148 AFVDADKPNYVHFHEQLLKL---VKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALL 204

Query: 254 NFNKNLMEDERVSISMVPIGDGMTICQK 281
            FNK L  D RV IS + IGDG+T+C++
Sbjct: 205 EFNKLLASDPRVEISQISIGDGVTLCRR 232

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  155 bits (392), Expect = 4e-46
 Identities = 89/222 (40%), Positives = 133/222 (59%), Gaps = 17/222 (7%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 29  LYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGV 88

Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL LPE G ++A + +  + E+     ++AGV+HK+  + G A   L  +I
Sbjct: 89  YTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI 148

Query: 189 LNGEA-SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDA 247
            +G+   ++DF FVDA+K  Y  Y + L+ L   ++VGG+I  DN LW+G V      DA
Sbjct: 149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDL---VKVGGVIGYDNTLWNGSVVAP--PDA 203

Query: 248 ---KTIS-IRNF----NKNLMEDERVSISMVPIGDGMTICQK 281
              K +   R+F    NK L  D R+ I M+P+GDG+T+C++
Sbjct: 204 PMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRR 245

Length = 247

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           +E+GVY+G S+L +A  L ++G   L + +        A     +AG++ +V++  G + 
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPG--AEAGANLRKAGLADRVRLLRGDSL 58

Query: 182 DSLKALILNGEASSYDFAFVDA--EKRMYQEYFELLLQLLLQIRVGGIIVIDNV 233
           ++L  L       S D  F+D            EL L LL     GGIIV  ++
Sbjct: 59  EALARL----PDGSIDLLFIDGDHTYEAVLADLELWLPLL---APGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +Q+ + P  A  +   + I    R +E G  +G  +  +A  +   G +   E     
Sbjct: 73  RRTQI-IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDF 131

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD 202
            + A++     G+  +V +K G   +         +    D  F+D
Sbjct: 132 AKTARENLSEFGLGDRVTLKLGDVREG-------IDEEDVDAVFLD 170

Length = 256

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           R +++G  TG  +LA+A        +   +    +LE+A+K    A ++  V++  G   
Sbjct: 1   RVLDLGCGTGALALALASGPGAR--VTGVDISPVALELARK-AAAALLADNVEVLKG--- 54

Query: 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQI----RVGGIIVI 230
           D+ +      E  S+D    D          E L + L +     + GG++V+
Sbjct: 55  DAEELPPEADE--SFDVIISDP---PLHHLVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183
           +++G  TG  ++  +L++ E+G + A ++D +++ + ++  E+ GV + + +  G A + 
Sbjct: 45  LDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE- 103

Query: 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234
               IL      +D  F+       +E      ++   I+ GG IVID +L
Sbjct: 104 ----ILFTINEKFDRIFIGGGSEKLKEIISASWEI---IKKGGRIVIDAIL 147

Length = 198

>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 107 QAQLLAMLVQILG---AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY 163
           Q  L+A+ ++ +G     R +E+G  TGY++  ++ V+ E G +V+ E   +  E+AK+ 
Sbjct: 65  QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 124

Query: 164 YERAGVSHKV 173
             R G+ + +
Sbjct: 125 VRRLGIENVI 134

Length = 322

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PLN02476	278	O-methyltransferase	100.0
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.76
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.74
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.73
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.72
PRK04457	262	spermidine synthase; Provisional	99.68
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.67
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.67
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.66
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.65
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.65
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.64
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.64
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.64
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.64
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.63
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.62
PRK07402	196	precorrin-6B methylase; Provisional	99.61
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.61
PLN03075	296	nicotianamine synthase; Provisional	99.6
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.58
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.58
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.58
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.58
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.58
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.57
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.57
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.56
COG4123	248	Predicted O-methyltransferase [General function pr	99.55
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.54
PLN02244	340	tocopherol O-methyltransferase	99.53
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.53
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.53
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.53
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.52
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.5
PRK00811	283	spermidine synthase; Provisional	99.5
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.5
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.5
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.5
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.5
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.49
PRK11207	197	tellurite resistance protein TehB; Provisional	99.49
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.49
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.49
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.49
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.48
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.48
PRK04266	226	fibrillarin; Provisional	99.48
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.48
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.47
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.47
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.47
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.46
PRK01581	374	speE spermidine synthase; Validated	99.46
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.46
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.46
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.46
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.46
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.46
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.45
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.45
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.45
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.45
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.45
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.44
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.44
PLN02366	308	spermidine synthase	99.44
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.44
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.43
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.43
PRK08317	241	hypothetical protein; Provisional	99.43
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.43
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.42
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.42
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.41
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.41
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.4
PRK14968	188	putative methyltransferase; Provisional	99.4
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.4
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.4
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.39
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.38
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.38
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.38
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.38
PRK12335	287	tellurite resistance protein TehB; Provisional	99.37
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.37
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.37
PLN02336	475	phosphoethanolamine N-methyltransferase	99.37
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.37
PRK06922	677	hypothetical protein; Provisional	99.35
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.35
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.35
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.35
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.34
PRK14967	223	putative methyltransferase; Provisional	99.34
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.34
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.33
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.33
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.32
COG2890	280	HemK Methylase of polypeptide chain release factor	99.32
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.32
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.31
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.31
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.3
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.29
PTZ00146	293	fibrillarin; Provisional	99.29
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.29
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.29
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.28
PLN02823	336	spermine synthase	99.28
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.28
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.27
PLN02490	340	MPBQ/MSBQ methyltransferase	99.27
TIGR03438	301	probable methyltransferase. This model represents	99.27
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.26
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.26
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.25
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.25
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.25
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.25
PRK03612	521	spermidine synthase; Provisional	99.24
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.23
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.23
KOG2904	328	consensus Predicted methyltransferase [General fun	99.23
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.22
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.21
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.21
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.21
TIGR00438	188	rrmJ cell division protein FtsJ.	99.21
PLN02336	475	phosphoethanolamine N-methyltransferase	99.2
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.19
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.19
KOG4300	252	consensus Predicted methyltransferase [General fun	99.19
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.19
PRK06202	232	hypothetical protein; Provisional	99.19
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.18
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.17
KOG1271	227	consensus Methyltransferases [General function pre	99.16
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.14
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.13
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.12
PLN02672	1082	methionine S-methyltransferase	99.11
PRK05785	226	hypothetical protein; Provisional	99.11
COG2521	287	Predicted archaeal methyltransferase [General func	99.1
PHA03412	241	putative methyltransferase; Provisional	99.09
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.09
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.07
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.07
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.07
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.06
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.06
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.03
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.01
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.01
PHA03411	279	putative methyltransferase; Provisional	99.01
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.0
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.0
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.97
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.97
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.97
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.93
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.91
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.91
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.91
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.89
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.89
COG2520	341	Predicted methyltransferase [General function pred	98.89
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.89
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.88
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.88
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.88
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.87
KOG2899	288	consensus Predicted methyltransferase [General fun	98.86
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.85
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.84
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.83
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.83
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.81
KOG2730	263	consensus Methylase [General function prediction o	98.8
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.8
KOG2361	264	consensus Predicted methyltransferase [General fun	98.8
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.79
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.77
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.77
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.75
PRK00536	262	speE spermidine synthase; Provisional	98.72
KOG3010	261	consensus Methyltransferase [General function pred	98.67
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.67
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.66
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.65
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.64
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.63
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.61
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.6
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.56
PRK04148	134	hypothetical protein; Provisional	98.56
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.56
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.52
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.52
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.49
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.49
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.48
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.42
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.42
PRK10742	250	putative methyltransferase; Provisional	98.41
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.38
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.35
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.32
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.31
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.31
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.31
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.3
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.27
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.27
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.26
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	98.24
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.23
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.19
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.18
COG4076	252	Predicted RNA methylase [General function predicti	98.16
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.15
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.15
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.14
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.14
PF13679	141	Methyltransf_32: Methyltransferase domain	98.11
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.09
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.08
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.05
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.91
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.9
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.89
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.87
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.84
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.82
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.81
COG3897	218	Predicted methyltransferase [General function pred	97.81
KOG3115	249	consensus Methyltransferase-like protein [General	97.79
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.72
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.72
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.69
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.68
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.67
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.65
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.64
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.59
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.57
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.56
KOG2940	325	consensus Predicted methyltransferase [General fun	97.45
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.45
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.41
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.38
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.38
COG0286	489	HsdM Type I restriction-modification system methyl	97.34
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.33
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.3
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.29
PHA01634	156	hypothetical protein	97.25
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.22
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.12
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.12
COG4798	238	Predicted methyltransferase [General function pred	97.07
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.87
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.87
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.85
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.74
KOG1227	351	consensus Putative methyltransferase [General func	96.7
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.7
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.58
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.57
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.56
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.52
COG4301	321	Uncharacterized conserved protein [Function unknow	96.5
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.44
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.44
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.42
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.17
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.16
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.15
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.06
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.77
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.67
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.61
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.19
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.07
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	94.99
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.95
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	94.88
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.81
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.75
PRK13699	227	putative methylase; Provisional	94.73
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.56
PRK11524	284	putative methyltransferase; Provisional	94.51
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.5
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.43
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.35
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.29
PRK11524	284	putative methyltransferase; Provisional	94.28
KOG1331	293	consensus Predicted methyltransferase [General fun	94.08
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	93.87
COG1565	370	Uncharacterized conserved protein [Function unknow	93.83
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.82
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.73
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.63
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.58
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	93.52
PRK13699	227	putative methylase; Provisional	93.26
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.26
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.23
KOG2360	413	consensus Proliferation-associated nucleolar prote	93.21
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.2
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	92.94
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	92.86
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	92.86
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.7
PTZ00357	1072	methyltransferase; Provisional	92.49
PLN02740	381	Alcohol dehydrogenase-like	92.33
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.26
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	92.25
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	92.24
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	92.12
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.82
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	91.8
COG3315	297	O-Methyltransferase involved in polyketide biosynt	91.75
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	91.74
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	91.7
PLN02827	378	Alcohol dehydrogenase-like	91.64
PRK08114	395	cystathionine beta-lyase; Provisional	91.61
KOG2912	419	consensus Predicted DNA methylase [Function unknow	91.6
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	91.54
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	91.53
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	91.51
KOG2078	495	consensus tRNA modification enzyme [RNA processing	91.36
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	91.06
COG2961	279	ComJ Protein involved in catabolism of external DN	91.04
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.97
COG1568	354	Predicted methyltransferases [General function pre	90.83
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.77
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	90.65
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.65
KOG2352	482	consensus Predicted spermine/spermidine synthase [	90.61
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	90.5
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	90.43
COG1255	129	Uncharacterized protein conserved in archaea [Func	90.31
KOG3924	419	consensus Putative protein methyltransferase invol	90.23
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	90.14
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.06
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	89.8
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	89.73
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	89.61
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	89.57
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	89.3
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	89.18
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	88.94
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	88.89
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	88.87
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	88.84
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.8
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	88.42
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	88.26
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.97
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	87.93
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	87.67
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	87.54
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	87.46
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	87.45
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	87.12
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	86.92
PRK09028	394	cystathionine beta-lyase; Provisional	86.7
PLN02586	360	probable cinnamyl alcohol dehydrogenase	86.62
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	86.55
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	86.45
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	86.41
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	86.4
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	86.36
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	86.32
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.87
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	85.42
KOG0780	483	consensus Signal recognition particle, subunit Srp	85.37
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	85.31
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	85.27
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	85.12
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	84.97
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	84.82
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	84.69
COG4017	254	Uncharacterized protein conserved in archaea [Func	84.68
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	84.55
PRK07582	366	cystathionine gamma-lyase; Validated	84.32
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	84.31
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	84.31
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	84.27
PRK05939	397	hypothetical protein; Provisional	84.19
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	84.02
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	83.94
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	83.82
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	83.69
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	83.5
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	83.4
PRK08247	366	cystathionine gamma-synthase; Reviewed	83.37
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	83.26
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	83.07
PRK10669	558	putative cation:proton antiport protein; Provision	82.94
PRK10458	467	DNA cytosine methylase; Provisional	82.9
PRK03659	601	glutathione-regulated potassium-efflux system prot	82.66
PRK06234	400	methionine gamma-lyase; Provisional	82.53
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	82.47
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	82.33
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	82.3
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	82.3
PRK09496	453	trkA potassium transporter peripheral membrane com	82.13
PF03269	177	DUF268: Caenorhabditis protein of unknown function	82.13
PRK09496	453	trkA potassium transporter peripheral membrane com	82.01
PRK08324	681	short chain dehydrogenase; Validated	81.88
PRK08045	386	cystathionine gamma-synthase; Provisional	81.68
PRK05967	395	cystathionine beta-lyase; Provisional	81.65
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	81.62
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	81.56
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	81.34
PLN02494	477	adenosylhomocysteinase	81.28
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	81.28
COG4121	252	Uncharacterized conserved protein [Function unknow	81.12
PRK03562	621	glutathione-regulated potassium-efflux system prot	81.08
PRK08861	388	cystathionine gamma-synthase; Provisional	81.08
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	80.79
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	80.76
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	80.64
PRK08306	296	dipicolinate synthase subunit A; Reviewed	80.55
PRK06940	275	short chain dehydrogenase; Provisional	80.52
PRK07417	279	arogenate dehydrogenase; Reviewed	80.52
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.24
PRK08574	385	cystathionine gamma-synthase; Provisional	80.16
PRK08251	248	short chain dehydrogenase; Provisional	80.13

>PLN02476 O-methyltransferase

Probab=100.00  E-value=1.1e-43  Score=309.86  Aligned_cols=272  Identities=74%  Similarity=1.120  Sum_probs=232.6

Q ss_pred             Ccccccchheeeeeecc------cchhhhhhccchhhhhhcCCCcCCCccCccccccccccccccccccccCCCChhHHH
Q 023411            1 MASSLVANRFAFVLLKT------EKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYD   74 (282)
Q Consensus         1 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   74 (282)
                      |+..++-||-.|+..++      ++++..-++..|..    ..|..|+..   .+...+++.+|.|.+++..+..+.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~   73 (278)
T PLN02476          1 MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLKFSR----RLIGNCSIA---PADPVVVANDDKYGNKQVISLTPRLYD   73 (278)
T ss_pred             CcchhhhhhhhhhhhhhhheeecCCccchhhhhHHHH----HhhcCCCCC---CCCceEEecchhhcccCcccchHHHHH
Confidence            44556666666554442      33333333333322    223333222   223567888999999999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc
Q 023411           75 YILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA  154 (282)
Q Consensus        75 y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~  154 (282)
                      |+.+..++++.+.++++++.++....|.+.+.+++++..+++..++++|||||||+|+++++++..++++++|+++|.++
T Consensus        74 Y~~~~~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~  153 (278)
T PLN02476         74 YVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS  153 (278)
T ss_pred             HHHhcCCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH
Confidence            99998888999999999998887778999999999999999999999999999999999999999998789999999999


Q ss_pred             cHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          155 RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       155 ~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +.++.|+++++.+|+.++++++.||+.+.++.+..++..++||+||+|+++..|..+++.+.++   |+|||+|++||++
T Consensus       154 e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~l---L~~GGvIV~DNvL  230 (278)
T PLN02476        154 NSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQL---VRVGGVIVMDNVL  230 (278)
T ss_pred             HHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHh---cCCCcEEEEecCc
Confidence            9999999999999999999999999999988875444347899999999999999999999999   9999999999999


Q ss_pred             CCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       235 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      |+|.+.++...+.++.++++|++.+.++|+++++++|+|||+++++|+
T Consensus       231 ~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        231 WHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             cCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            999999988777888999999999999999999999999999999996

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=1.5e-40  Score=280.12  Aligned_cols=200  Identities=45%  Similarity=0.784  Sum_probs=184.2

Q ss_pred             cCChHHHHHHHHHHHccC-CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHH
Q 023411           80 VREPEILRQLREETAGMR-GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE  158 (282)
Q Consensus        80 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~  158 (282)
                      ..+++.|.++++.+.+.. .+.|.+++.+++++..+++..++++||||||++|++++++++.+|++++|+++|++++..+
T Consensus         5 ~~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~   84 (205)
T PF01596_consen    5 VREPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE   84 (205)
T ss_dssp             TCSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH
T ss_pred             cCCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH
Confidence            457899999999998765 5578899999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          159 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       159 ~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      .|+++++.+|+.++|+++.||+.+.++.+...+..++||+||+|+.+.+|..+++.+.++   |+|||+|++||++|+|.
T Consensus        85 ~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~l---l~~ggvii~DN~l~~G~  161 (205)
T PF01596_consen   85 IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPL---LRPGGVIIADNVLWRGS  161 (205)
T ss_dssp             HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHH---EEEEEEEEEETTTGGGG
T ss_pred             HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhh---ccCCeEEEEccccccce
Confidence            999999999999999999999999999887655457899999999999999999999999   99999999999999999


Q ss_pred             ccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          239 VADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      |.++...+..+.++++|++.+.++|+++++++|+|||++++|||
T Consensus       162 V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  162 VADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             GGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             ecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            99997777888899999999999999999999999999999997

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=4.7e-38  Score=271.50  Aligned_cols=214  Identities=40%  Similarity=0.697  Sum_probs=192.8

Q ss_pred             CCCChhHHHHHHhc---cCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC
Q 023411           66 ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (282)
Q Consensus        66 ~~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~  142 (282)
                      ....+.+++|+.++   .++++.+.++++++.++..+.|.+++.+++++..+++..++++|||||+++|+++++++..++
T Consensus        23 ~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~  102 (247)
T PLN02589         23 LLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP  102 (247)
T ss_pred             ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC
Confidence            35568999999774   357889999999998887777889999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC-CCceeEEEEcCCccccHHHHHHHHHhhcC
Q 023411          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLLLQ  221 (282)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~-~~~fDlV~id~~~~~~~~~l~~~~~~~~~  221 (282)
                      ++++++++|.+++..+.|+++++.+|+.++|+++.|++.+.++.+...+. .++||+||+|+++..|..+++.+.++   
T Consensus       103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~l---  179 (247)
T PLN02589        103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDL---  179 (247)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHh---
Confidence            88999999999999999999999999999999999999999988754321 36999999999999999999999999   


Q ss_pred             CCCCcEEEEeCCCCCCcccCCcCCC-hh-----hHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          222 IRVGGIIVIDNVLWHGKVADQMVND-AK-----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       222 LkpgG~lv~dd~~~~g~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      |+|||+|++||++|+|.+.++.... .+     +.++++|++.+.++++++++++|+|||+++++|+
T Consensus       180 l~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        180 VKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             cCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            9999999999999999998875422 11     2368999999999999999999999999999995

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.7e-38  Score=262.98  Aligned_cols=216  Identities=53%  Similarity=0.894  Sum_probs=203.5

Q ss_pred             ccCCCChhHHHHHHhc---cCChHHHHHHHHHHHcc--CCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHH
Q 023411           64 QVISVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIA  138 (282)
Q Consensus        64 ~~~~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la  138 (282)
                      +....++..++|+...   .++++.+.++++.+..+  +.+.|.+.+++++++..+++...++++||||+.||++++.+|
T Consensus        13 ~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~A   92 (237)
T KOG1663|consen   13 RLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVA   92 (237)
T ss_pred             hcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHH
Confidence            3566788888999876   57899999999999887  488999999999999999999999999999999999999999


Q ss_pred             HHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHh
Q 023411          139 LVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQL  218 (282)
Q Consensus       139 ~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~  218 (282)
                      .++|++|+|+++|++++..+.+.+..+.+|+.++|+++++++.+.++++.+.++.+.||++|+|+++.+|..+++.+.++
T Consensus        93 lalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~L  172 (237)
T KOG1663|consen   93 LALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRL  172 (237)
T ss_pred             HhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             hcCCCCCcEEEEeCCCCCCcccCCcCCCh-hhHHHH---HHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          219 LLQIRVGGIIVIDNVLWHGKVADQMVNDA-KTISIR---NFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       219 ~~~LkpgG~lv~dd~~~~g~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                         +|+||+|++||++|+|.+++|+.... ++..++   +||+.+..||+++++++|+|||+++|+|+
T Consensus       173 ---lr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  173 ---LRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             ---cccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCceeeeccC
Confidence               99999999999999999999877655 788999   99999999999999999999999999986

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=9.5e-37  Score=256.84  Aligned_cols=207  Identities=39%  Similarity=0.685  Sum_probs=183.2

Q ss_pred             CCChhHHHHHHhccC--ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCC
Q 023411           67 SVTPPLYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES  144 (282)
Q Consensus        67 ~~~~~l~~y~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~  144 (282)
                      ...+.+.+|+.+...  .+..+.++++...+..  .+.+.++++.++..+++..++++|||||++.|+++++||..+|++
T Consensus         7 ~~~~~l~~y~~~~~~~~~~~~~~~~~e~a~~~~--~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~   84 (219)
T COG4122           7 NMDEDLYDYLEALIPGEPPALLAELEEFARENG--VPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDD   84 (219)
T ss_pred             cchHHHHHHHHhhcccCCchHHHHHHHHhHhcC--CCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCC
Confidence            466889999999874  3556666666665543  333449999999999999999999999999999999999999988


Q ss_pred             CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCC
Q 023411          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIR  223 (282)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lk  223 (282)
                      +++|+||+++++.+.|+++++++|+.++++++. +|+.+.+....    .++||+||+|+++..|+++++.+.++   |+
T Consensus        85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~----~~~fDliFIDadK~~yp~~le~~~~l---Lr  157 (219)
T COG4122          85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLL----DGSFDLVFIDADKADYPEYLERALPL---LR  157 (219)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhcc----CCCccEEEEeCChhhCHHHHHHHHHH---hC
Confidence            999999999999999999999999999999999 59988877521    68999999999999999999999999   99


Q ss_pred             CCcEEEEeCCCCCCcccCCcCCChhhH--HHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          224 VGGIIVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       224 pgG~lv~dd~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      |||++|+||++|+|.+.++..++..+.  +++.|++.+.++|+++.+++|+|||+++++|+
T Consensus       158 ~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~  218 (219)
T COG4122         158 PGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR  218 (219)
T ss_pred             CCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence            999999999999999999865554444  59999999999999999999999999999985

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=2.6e-36  Score=260.43  Aligned_cols=213  Identities=41%  Similarity=0.675  Sum_probs=189.8

Q ss_pred             CCChhHHHHHHhc---cCChHHHHHHHHHHHccC--CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC
Q 023411           67 SVTPPLYDYILRN---VREPEILRQLREETAGMR--GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL  141 (282)
Q Consensus        67 ~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~  141 (282)
                      ..++.+++|+.+.   .++++.+.++++++.++.  .+.|.+.+.+++++..+++..++++|||||||+|+++++++..+
T Consensus        11 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~   90 (234)
T PLN02781         11 LKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALAL   90 (234)
T ss_pred             CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhC
Confidence            4457889999775   367899999999997652  35678899999999999999999999999999999999999998


Q ss_pred             CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcC
Q 023411          142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQ  221 (282)
Q Consensus       142 ~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~  221 (282)
                      +++++++++|+++++++.|+++++.+|+.++++++.+|+.+.++.+...+..++||+||+|+.+..+..+++.+.++   
T Consensus        91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~l---  167 (234)
T PLN02781         91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKL---  167 (234)
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHh---
Confidence            87899999999999999999999999999999999999999888775443346899999999999999999999999   


Q ss_pred             CCCCcEEEEeCCCCCCcccCCcCCCh-----hhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          222 IRVGGIIVIDNVLWHGKVADQMVNDA-----KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       222 LkpgG~lv~dd~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      |+|||+|++||++|+|.+.++.....     .+.++++|++.+.++|+++++++|+|||+++++|+
T Consensus       168 l~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~  233 (234)
T PLN02781        168 VKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRL  233 (234)
T ss_pred             cCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence            99999999999999999988764221     24689999999999999999999999999999984

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.76  E-value=2.5e-18  Score=149.85  Aligned_cols=162  Identities=14%  Similarity=0.211  Sum_probs=138.4

Q ss_pred             cccccccccccccccccccCCCChhHHHHHHhccCChH-HHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEE
Q 023411           47 TTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPE-ILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIE  125 (282)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLE  125 (282)
                      .....++.+|||.....+.+.+++.+ .|.+..+.+++ .|++.+....++              +...+...++++|||
T Consensus        14 ~~~~~~i~~HYDl~n~fy~l~Ld~~~-~Yscayf~~~~~tL~eAQ~~k~~~--------------~~~kl~L~~G~~lLD   78 (283)
T COG2230          14 RRAAENIQAHYDLSNDFYRLFLDPSM-TYSCAYFEDPDMTLEEAQRAKLDL--------------ILEKLGLKPGMTLLD   78 (283)
T ss_pred             cchhhhhhhHhhcchHHHHHhcCCCC-ceeeEEeCCCCCChHHHHHHHHHH--------------HHHhcCCCCCCEEEE
Confidence            34567899999999999999999996 99999877654 577776665443              556667889999999


Q ss_pred             EcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC-
Q 023411          126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-  204 (282)
Q Consensus       126 IG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~-  204 (282)
                      ||||+|..++++|+..  +.+|+|+++|+++.+.+++.+...|++.+++++..|..+.         .+.||.|+.-+. 
T Consensus        79 iGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---------~e~fDrIvSvgmf  147 (283)
T COG2230          79 IGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---------EEPFDRIVSVGMF  147 (283)
T ss_pred             eCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---------ccccceeeehhhH
Confidence            9999999999999987  5899999999999999999999999998899999998765         466999987543 


Q ss_pred             ----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          205 ----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       205 ----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                          .++++.||+.+.++   |+|||.++++.+.-+.
T Consensus       148 Ehvg~~~~~~ff~~~~~~---L~~~G~~llh~I~~~~  181 (283)
T COG2230         148 EHVGKENYDDFFKKVYAL---LKPGGRMLLHSITGPD  181 (283)
T ss_pred             HHhCcccHHHHHHHHHhh---cCCCceEEEEEecCCC
Confidence                66799999999999   9999999999887555

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.74  E-value=1.6e-17  Score=126.76  Aligned_cols=104  Identities=22%  Similarity=0.393  Sum_probs=86.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      |+.+|||||||+|..+.++++..+ +++|+++|+++++++.+++++...+..++++++++|+ ......     .++||+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-----~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF-----LEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-----SSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-----CCCCCE
Confidence            467999999999999999999655 7899999999999999999998888888999999999 322222     478999


Q ss_pred             EEEcC-Ccc------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          199 AFVDA-EKR------MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       199 V~id~-~~~------~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |++.. ...      ....+++.+.+.   |+|||+++++.
T Consensus        74 v~~~~~~~~~~~~~~~~~~~l~~~~~~---L~pgG~lvi~~  111 (112)
T PF12847_consen   74 VICSGFTLHFLLPLDERRRVLERIRRL---LKPGGRLVINT  111 (112)
T ss_dssp             EEECSGSGGGCCHHHHHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             EEECCCccccccchhHHHHHHHHHHHh---cCCCcEEEEEE
Confidence            99988 322      234457778787   99999999874

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.73  E-value=9.8e-18  Score=147.64  Aligned_cols=162  Identities=15%  Similarity=0.222  Sum_probs=115.9

Q ss_pred             ccccccccccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEE
Q 023411           48 TNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV  126 (282)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEI  126 (282)
                      ....+...|||.....+.+.+++.+ .|.+.... +.+.|++.+....+.              +...+...++.+||||
T Consensus         5 ~~~~~i~~hYDl~ndfy~l~Ld~~m-~YS~~~~~~~~~~Le~AQ~~k~~~--------------~~~~~~l~~G~~vLDi   69 (273)
T PF02353_consen    5 QSRENISAHYDLGNDFYRLFLDPTM-KYSCAYFDEGDDTLEEAQERKLDL--------------LCEKLGLKPGDRVLDI   69 (273)
T ss_dssp             --HHHHHHHHTS-HHHHTTTS-TT----S----SSTT--HHHHHHHHHHH--------------HHTTTT--TT-EEEEE
T ss_pred             hHHHHHHHHcCCcHHHHHHhcCCCC-CCCCeecCCchhhHHHHHHHHHHH--------------HHHHhCCCCCCEEEEe
Confidence            3466788999999999999999985 88887754 456688877776543              4445567889999999


Q ss_pred             cccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC--
Q 023411          127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--  204 (282)
Q Consensus       127 G~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~--  204 (282)
                      |||+|..+.++++..  +++|+||++|++..+.+++.++..|+.+++++..+|..+.         ..+||.|+.-..  
T Consensus        70 GcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~---------~~~fD~IvSi~~~E  138 (273)
T PF02353_consen   70 GCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL---------PGKFDRIVSIEMFE  138 (273)
T ss_dssp             S-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SEEEEESEGG
T ss_pred             CCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc---------CCCCCEEEEEechh
Confidence            999999999999986  5899999999999999999999999999999999998764         369999986533  


Q ss_pred             ---ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          205 ---KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       205 ---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                         ..++..+++.+.++   |+|||.++++.+.....
T Consensus       139 hvg~~~~~~~f~~~~~~---LkpgG~~~lq~i~~~~~  172 (273)
T PF02353_consen  139 HVGRKNYPAFFRKISRL---LKPGGRLVLQTITHRDP  172 (273)
T ss_dssp             GTCGGGHHHHHHHHHHH---SETTEEEEEEEEEE--H
T ss_pred             hcChhHHHHHHHHHHHh---cCCCcEEEEEecccccc
Confidence               35678899999999   99999999998865554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.72  E-value=4.3e-16  Score=127.24  Aligned_cols=122  Identities=25%  Similarity=0.337  Sum_probs=106.7

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      +...++...+....+...++.+++|||||+|..++.++.. .+.+++++||.++++++..++|.++.|++ +++++.|++
T Consensus        16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~A   93 (187)
T COG2242          16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDA   93 (187)
T ss_pred             CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccc
Confidence            3456666666667777889999999999999999999954 45899999999999999999999999965 599999999


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .+.++.+      .++|.||+.+. ......++.+...   |||||.||++-+.
T Consensus        94 p~~L~~~------~~~daiFIGGg-~~i~~ile~~~~~---l~~ggrlV~nait  137 (187)
T COG2242          94 PEALPDL------PSPDAIFIGGG-GNIEEILEAAWER---LKPGGRLVANAIT  137 (187)
T ss_pred             hHhhcCC------CCCCEEEECCC-CCHHHHHHHHHHH---cCcCCeEEEEeec
Confidence            9988754      48999999999 8888999999999   9999999998664

>PRK04457 spermidine synthase; Provisional

Probab=99.68  E-value=3.4e-15  Score=131.09  Aligned_cols=110  Identities=20%  Similarity=0.253  Sum_probs=92.0

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+....++++|||||||+|.++.++++..| +.+++++|+++++++.|++++...+..++++++++|+.+.+...     
T Consensus        60 ~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~-----  133 (262)
T PRK04457         60 FLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH-----  133 (262)
T ss_pred             HHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC-----
Confidence            333345678999999999999999999886 78999999999999999999876555578999999998887654     


Q ss_pred             CCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++||+|++|....       ...++++.+.+.   |+|||++++.
T Consensus       134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~---L~pgGvlvin  176 (262)
T PRK04457        134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNA---LSSDGIFVVN  176 (262)
T ss_pred             CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHh---cCCCcEEEEE
Confidence            47899999986522       136889999998   9999999995

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.67  E-value=2.1e-15  Score=127.14  Aligned_cols=113  Identities=21%  Similarity=0.421  Sum_probs=96.1

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ......++.+|||+|||+|.+++.++...++.++|+++|+++++++.++++++.+++.++++++.+|+.+.++..     
T Consensus        34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~-----  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI-----  108 (198)
T ss_pred             HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----
Confidence            334556778999999999999999998776568999999999999999999999987677999999998765543     


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .++||.||++........+++.+.++   |+|||.++++.+
T Consensus       109 ~~~~D~V~~~~~~~~~~~~l~~~~~~---LkpgG~lv~~~~  146 (198)
T PRK00377        109 NEKFDRIFIGGGSEKLKEIISASWEI---IKKGGRIVIDAI  146 (198)
T ss_pred             CCCCCEEEECCCcccHHHHHHHHHHH---cCCCcEEEEEee
Confidence            47899999987766777888888888   999999998655

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.67  E-value=4.1e-15  Score=124.21  Aligned_cols=119  Identities=25%  Similarity=0.328  Sum_probs=96.3

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +.+.....+...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..++. +++++++|...
T Consensus        15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~   92 (187)
T PRK08287         15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI   92 (187)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh
Confidence            3444444444555566788999999999999999998875 689999999999999999999988875 59999998742


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .   +     .++||+||++........+++.+.+.   |+|||+++++.+.
T Consensus        93 ~---~-----~~~~D~v~~~~~~~~~~~~l~~~~~~---Lk~gG~lv~~~~~  133 (187)
T PRK08287         93 E---L-----PGKADAIFIGGSGGNLTAIIDWSLAH---LHPGGRLVLTFIL  133 (187)
T ss_pred             h---c-----CcCCCEEEECCCccCHHHHHHHHHHh---cCCCeEEEEEEec
Confidence            1   2     46899999988766677788888888   9999999997553

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.66  E-value=2.4e-15  Score=116.39  Aligned_cols=109  Identities=25%  Similarity=0.398  Sum_probs=91.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ......+..+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..+.. +++++.+|+.+.++..     
T Consensus        13 ~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~-----   85 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS-----   85 (124)
T ss_pred             HHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh-----
Confidence            333445667999999999999999999887 589999999999999999999988776 5899999876433332     


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++||.|+++........+++.+.+.   |+|||.++++
T Consensus        86 ~~~~D~v~~~~~~~~~~~~l~~~~~~---Lk~gG~li~~  121 (124)
T TIGR02469        86 LPEPDRVFIGGSGGLLQEILEAIWRR---LRPGGRIVLN  121 (124)
T ss_pred             cCCCCEEEECCcchhHHHHHHHHHHH---cCCCCEEEEE
Confidence            46899999988777777888889888   9999999986

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=7.7e-16  Score=131.93  Aligned_cols=113  Identities=19%  Similarity=0.261  Sum_probs=94.8

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .....++.+|||+|||||..++.+++..+ .++|+++|+|+.|++.+++.....+..+ ++++++|+.+. |.-     +
T Consensus        46 ~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-Pf~-----D  117 (238)
T COG2226          46 LLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-PFP-----D  117 (238)
T ss_pred             hhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-CCC-----C
Confidence            33334789999999999999999999998 8999999999999999999999988887 99999999754 322     7


Q ss_pred             CceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          194 SSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       194 ~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ++||+|.+.-..   .+....++++.++   |||||.+++-+...+.
T Consensus       118 ~sFD~vt~~fglrnv~d~~~aL~E~~RV---lKpgG~~~vle~~~p~  161 (238)
T COG2226         118 NSFDAVTISFGLRNVTDIDKALKEMYRV---LKPGGRLLVLEFSKPD  161 (238)
T ss_pred             CccCEEEeeehhhcCCCHHHHHHHHHHh---hcCCeEEEEEEcCCCC
Confidence            999999988664   4566677777777   9999999987776543

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.65  E-value=2.1e-15  Score=127.91  Aligned_cols=116  Identities=22%  Similarity=0.318  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (282)
                      +.....+...+...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.++++++..++.++++++++|+.+.+
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence            33444444555556778999999999999999999886568999999999999999999999998878999999987644


Q ss_pred             HHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +.      .++||.|+++....+.+   +.+.+.   |+|||.|++..
T Consensus       138 ~~------~~~fD~Ii~~~~~~~~~---~~l~~~---L~~gG~lvi~~  173 (205)
T PRK13944        138 EK------HAPFDAIIVTAAASTIP---SALVRQ---LKDGGVLVIPV  173 (205)
T ss_pred             cc------CCCccEEEEccCcchhh---HHHHHh---cCcCcEEEEEE
Confidence            32      46899999998765443   456677   99999998853

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.64  E-value=3.3e-15  Score=127.58  Aligned_cols=116  Identities=22%  Similarity=0.414  Sum_probs=95.4

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ..|.....+...+...++.+|||||||+|+.+..+++..++.++|+++|+++++++.|+++++..++. +++++++|+.+
T Consensus        61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~  139 (215)
T TIGR00080        61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQ  139 (215)
T ss_pred             chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCccc
Confidence            45555566666777888999999999999999999998765688999999999999999999999885 59999999876


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+.      ..+||+|++++......   +.+.+.   |+|||++++.
T Consensus       140 ~~~~------~~~fD~Ii~~~~~~~~~---~~~~~~---L~~gG~lv~~  176 (215)
T TIGR00080       140 GWEP------LAPYDRIYVTAAGPKIP---EALIDQ---LKEGGILVMP  176 (215)
T ss_pred             CCcc------cCCCCEEEEcCCccccc---HHHHHh---cCcCcEEEEE
Confidence            4332      36899999998765543   456677   9999999884

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.64  E-value=8.3e-15  Score=121.71  Aligned_cols=101  Identities=23%  Similarity=0.395  Sum_probs=86.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..++...+ .++|+++|.++++++.++++.+..++.+ ++++++|+.+...       .++||
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~-------~~~fD  111 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH-------EEQFD  111 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc-------cCCcc
Confidence            3578999999999999999987655 6899999999999999999999988864 9999999976421       47999


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++++ ..++..+++.+.++   |+|||++++.
T Consensus       112 ~I~s~~-~~~~~~~~~~~~~~---LkpgG~lvi~  141 (181)
T TIGR00138       112 VITSRA-LASLNVLLELTLNL---LKVGGYFLAY  141 (181)
T ss_pred             EEEehh-hhCHHHHHHHHHHh---cCCCCEEEEE
Confidence            999987 55677788888888   9999999975

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.64  E-value=6.8e-16  Score=133.05  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=83.0

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +..+....++.+|||+|||+|.++..+++..++.++|+++|+|++|++.|++..+..+.. +++++++|+.+. +..   
T Consensus        39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~~---  113 (233)
T PF01209_consen   39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PFP---  113 (233)
T ss_dssp             HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S----
T ss_pred             HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cCC---
Confidence            333445567889999999999999999998876799999999999999999999988876 699999999764 322   


Q ss_pred             CCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          191 GEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       191 ~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                        +++||.|++.-..   .+....++++.++   |||||.+++-+...+.
T Consensus       114 --d~sfD~v~~~fglrn~~d~~~~l~E~~RV---LkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  114 --DNSFDAVTCSFGLRNFPDRERALREMYRV---LKPGGRLVILEFSKPR  158 (233)
T ss_dssp             --TT-EEEEEEES-GGG-SSHHHHHHHHHHH---EEEEEEEEEEEEEB-S
T ss_pred             --CCceeEEEHHhhHHhhCCHHHHHHHHHHH---cCCCeEEEEeeccCCC
Confidence              6899999987653   3456677778787   9999999886665443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.64  E-value=3.3e-15  Score=127.29  Aligned_cols=118  Identities=24%  Similarity=0.361  Sum_probs=98.1

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      ..+.|.....+...+...++.+|||||||+|+.+..+++..+++++|+++|+++++++.++++++..++. +++++++|+
T Consensus        58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~  136 (212)
T PRK13942         58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG  136 (212)
T ss_pred             EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc
Confidence            3467777777777778888999999999999999999998766689999999999999999999998875 599999998


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+..+.      .++||+|++++...+..   +.+.+.   |+|||.+++.
T Consensus       137 ~~~~~~------~~~fD~I~~~~~~~~~~---~~l~~~---LkpgG~lvi~  175 (212)
T PRK13942        137 TLGYEE------NAPYDRIYVTAAGPDIP---KPLIEQ---LKDGGIMVIP  175 (212)
T ss_pred             ccCCCc------CCCcCEEEECCCcccch---HHHHHh---hCCCcEEEEE
Confidence            654321      47899999988765543   356667   9999999884

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=5.4e-15  Score=125.92  Aligned_cols=137  Identities=20%  Similarity=0.329  Sum_probs=116.1

Q ss_pred             CChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEE
Q 023411           68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCL  147 (282)
Q Consensus        68 ~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v  147 (282)
                      +.+.+.+|+..                 ++...-.+.|....++...+.+.++.+|+|.|+|+|..+.+|+..+.+.|+|
T Consensus        60 l~p~~~d~~~~-----------------~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v  122 (256)
T COG2519          60 LKPTPEDYLLS-----------------MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHV  122 (256)
T ss_pred             eCCCHHHHHHh-----------------CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceE
Confidence            56666677666                 3333446788888899999999999999999999999999999998878999


Q ss_pred             EEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcE
Q 023411          148 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGI  227 (282)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~  227 (282)
                      +++|+.+++++.|++|++..++.+++++..+|..+...       .+.||.||+|-+.+  .++++.+.+.   |+|||.
T Consensus       123 ~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~vDav~LDmp~P--W~~le~~~~~---Lkpgg~  190 (256)
T COG2519         123 TTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDVDAVFLDLPDP--WNVLEHVSDA---LKPGGV  190 (256)
T ss_pred             EEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------ccccCEEEEcCCCh--HHHHHHHHHH---hCCCcE
Confidence            99999999999999999999999999999999987543       46999999997633  4567788887   999999


Q ss_pred             EEEeCC
Q 023411          228 IVIDNV  233 (282)
Q Consensus       228 lv~dd~  233 (282)
                      +++-..
T Consensus       191 ~~~y~P  196 (256)
T COG2519         191 VVVYSP  196 (256)
T ss_pred             EEEEcC
Confidence            988443

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.62  E-value=6.5e-15  Score=122.76  Aligned_cols=100  Identities=20%  Similarity=0.367  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|..++.++...+ +++|+++|+++++++.++++.+.+++++ ++++++|+.+...       .++||+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-------~~~fDl  115 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-------EEKFDV  115 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-------CCCccE
Confidence            478999999999999999998765 7899999999999999999999999876 9999999976321       368999


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+++.. .....+++.+.++   |+|||++++-
T Consensus       116 V~~~~~-~~~~~~l~~~~~~---LkpGG~lv~~  144 (187)
T PRK00107        116 VTSRAV-ASLSDLVELCLPL---LKPGGRFLAL  144 (187)
T ss_pred             EEEccc-cCHHHHHHHHHHh---cCCCeEEEEE
Confidence            999764 4567788888888   9999999885

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.61  E-value=3.2e-14  Score=119.74  Aligned_cols=123  Identities=23%  Similarity=0.349  Sum_probs=98.6

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      .+.+.+....++...+...++.+|||+|||+|.++..++...+ +++|+++|+++++++.++++++..++. +++++++|
T Consensus        21 ~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d   98 (196)
T PRK07402         21 IPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGS   98 (196)
T ss_pred             CCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECc
Confidence            3455666666666666777788999999999999999987665 689999999999999999999998885 59999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +.+.+..+     ...+|.++++.. ......++.+.++   |+|||.+++...
T Consensus        99 ~~~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~---LkpgG~li~~~~  143 (196)
T PRK07402         99 APECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQY---LKPGGRLVATAS  143 (196)
T ss_pred             hHHHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHh---cCCCeEEEEEee
Confidence            87654433     345788888764 3456778888888   999999999764

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.61  E-value=3.2e-15  Score=120.63  Aligned_cols=108  Identities=18%  Similarity=0.329  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++..+|||+|||+|..+..++....++++++++|+++++++.|++.++..+.. +++++++|+.+ ++...    .++||
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D   75 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFD   75 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCee
Confidence            35679999999999999999966555799999999999999999999999988 69999999987 33210    27999


Q ss_pred             EEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|++.....+   ....++.+.++   |++||++++.+..
T Consensus        76 ~I~~~~~l~~~~~~~~~l~~~~~~---lk~~G~~i~~~~~  112 (152)
T PF13847_consen   76 IIISNGVLHHFPDPEKVLKNIIRL---LKPGGILIISDPN  112 (152)
T ss_dssp             EEEEESTGGGTSHHHHHHHHHHHH---EEEEEEEEEEEEE
T ss_pred             EEEEcCchhhccCHHHHHHHHHHH---cCCCcEEEEEECC
Confidence            9999876433   44567777787   9999999998776

...

>PLN03075 nicotianamine synthase; Provisional

Probab=99.60  E-value=9.1e-15  Score=128.94  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEccccc-HHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH-hCCCCcEEEEEcchh
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AGVSHKVKIKHGLAA  181 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~g~~~~v~~~~gd~~  181 (282)
                      .+.+..++..+... ++++|+|||||.| ++++.++....++++++++|+++++++.|++.+.. .++.++++|..+|+.
T Consensus       109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~  187 (296)
T PLN03075        109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM  187 (296)
T ss_pred             HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence            44455555555554 8899999999955 45666665544489999999999999999999965 889899999999998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          182 DSLKALILNGEASSYDFAFVDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +..+.      .+.||+||+++-    +......++.+.+.   |+|||++++..
T Consensus       188 ~~~~~------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~---LkPGG~Lvlr~  233 (296)
T PLN03075        188 DVTES------LKEYDVVFLAALVGMDKEEKVKVIEHLGKH---MAPGALLMLRS  233 (296)
T ss_pred             hcccc------cCCcCEEEEecccccccccHHHHHHHHHHh---cCCCcEEEEec
Confidence            74322      378999999952    46778889999988   99999999976

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.58  E-value=2e-14  Score=118.29  Aligned_cols=109  Identities=22%  Similarity=0.361  Sum_probs=88.3

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      +|...+...+..+|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++.+++.+ +++++.|..+..+    
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~----   95 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP----   95 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC----
T ss_pred             HHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc----
Confidence            455555555888999999999999999999876 5689999999999999999999999987 9999999876443    


Q ss_pred             CCCCCceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          190 NGEASSYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                         .++||+|+++++..        ....+++.+.++   |+|||.+++
T Consensus        96 ---~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~---Lk~~G~l~l  138 (170)
T PF05175_consen   96 ---DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRY---LKPGGRLFL  138 (170)
T ss_dssp             ---TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHH---EEEEEEEEE
T ss_pred             ---ccceeEEEEccchhcccccchhhHHHHHHHHHHh---ccCCCEEEE
Confidence               48999999987632        245567777787   999998855

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.58  E-value=1.7e-14  Score=124.32  Aligned_cols=113  Identities=18%  Similarity=0.293  Sum_probs=89.8

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +...+...++.+|||+|||+|..+..+++..+++++|+++|+++++++.++++++..++. +++++++|+.+..  .   
T Consensus        37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~--~---  110 (231)
T TIGR02752        37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELP--F---  110 (231)
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCC--C---
Confidence            334445567789999999999999999998766789999999999999999999887774 6999999986532  1   


Q ss_pred             CCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          191 GEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                       ..++||+|++....   .++...++.+.++   |+|||.+++.+.
T Consensus       111 -~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~---Lk~gG~l~~~~~  152 (231)
T TIGR02752       111 -DDNSFDYVTIGFGLRNVPDYMQVLREMYRV---VKPGGKVVCLET  152 (231)
T ss_pred             -CCCCccEEEEecccccCCCHHHHHHHHHHH---cCcCeEEEEEEC
Confidence             14799999987553   3455667777777   999999987554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.7e-14  Score=120.27  Aligned_cols=118  Identities=26%  Similarity=0.412  Sum_probs=100.5

Q ss_pred             CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (282)
                      .+...+.|.....+.+++...++.+|||||||+||.+..|++..   ++|+++|+.++..+.|+++++..|+.+ |.+++
T Consensus        51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~  126 (209)
T COG2518          51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRH  126 (209)
T ss_pred             CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence            34456777788888889999999999999999999999999875   499999999999999999999999987 99999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|...-++.      ..+||.|++.+.....+.   .+.+.   |++||.+|+-
T Consensus       127 gDG~~G~~~------~aPyD~I~Vtaaa~~vP~---~Ll~Q---L~~gGrlv~P  168 (209)
T COG2518         127 GDGSKGWPE------EAPYDRIIVTAAAPEVPE---ALLDQ---LKPGGRLVIP  168 (209)
T ss_pred             CCcccCCCC------CCCcCEEEEeeccCCCCH---HHHHh---cccCCEEEEE
Confidence            999875553      489999999988666554   34455   8999999984

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.58  E-value=1.5e-14  Score=122.32  Aligned_cols=122  Identities=19%  Similarity=0.267  Sum_probs=95.2

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      .+.+++....+...+..  ++.+|||+|||+|..+..++...+ +.+|+++|+++++++.+++++...++. +++++++|
T Consensus        23 ~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d   98 (202)
T PRK00121         23 WPRLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGD   98 (202)
T ss_pred             chhhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecC
Confidence            34556666666666666  667999999999999999998876 679999999999999999999988874 59999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCc------c-----ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEK------R-----MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~------~-----~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +.+.++...   ..++||+|++....      +     ....+++.+.++   |+|||++++.
T Consensus        99 ~~~~l~~~~---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~---LkpgG~l~i~  155 (202)
T PRK00121         99 AVEVLLDMF---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARK---LKPGGEIHFA  155 (202)
T ss_pred             HHHHHHHHc---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHH---cCCCCEEEEE
Confidence            944444221   14789999985321      1     146788888888   9999999884

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.58  E-value=3.1e-14  Score=123.05  Aligned_cols=128  Identities=21%  Similarity=0.265  Sum_probs=97.7

Q ss_pred             cCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEE
Q 023411           96 MRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (282)
Q Consensus        96 ~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (282)
                      +++..-.+.|....++...+...++.+|||.|+|+|..|.++++.+.+.|+|+++|..++.++.|+++++.+|+.+++++
T Consensus        17 l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~   96 (247)
T PF08704_consen   17 LPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTV   96 (247)
T ss_dssp             S-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEE
T ss_pred             ccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCcee
Confidence            45555578999999999999999999999999999999999999998789999999999999999999999999989999


Q ss_pred             EEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCC-CCCcEEEEe
Q 023411          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQI-RVGGIIVID  231 (282)
Q Consensus       176 ~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~L-kpgG~lv~d  231 (282)
                      .+.|..+...   ..+.+..+|.||+|-+.+  ...+..+.+.   | ++||.+++-
T Consensus        97 ~~~Dv~~~g~---~~~~~~~~DavfLDlp~P--w~~i~~~~~~---L~~~gG~i~~f  145 (247)
T PF08704_consen   97 HHRDVCEEGF---DEELESDFDAVFLDLPDP--WEAIPHAKRA---LKKPGGRICCF  145 (247)
T ss_dssp             EES-GGCG-----STT-TTSEEEEEEESSSG--GGGHHHHHHH---E-EEEEEEEEE
T ss_pred             Eecceecccc---cccccCcccEEEEeCCCH--HHHHHHHHHH---HhcCCceEEEE
Confidence            9999974321   001147899999997733  2346677787   9 899999873

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.57  E-value=1.8e-14  Score=126.47  Aligned_cols=115  Identities=11%  Similarity=0.084  Sum_probs=88.4

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH--hCCCCcEEEEEcchhhHHHHHHhC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      .+....++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++...  .+...+++++++|+.+. +.    
T Consensus        67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~----  141 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PF----  141 (261)
T ss_pred             HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CC----
Confidence            344556778999999999999999998775568999999999999999877542  22334699999998653 21    


Q ss_pred             CCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          191 GEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       191 ~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                       .+++||+|++....   .+....++++.++   |||||.+++-+...+
T Consensus       142 -~~~sfD~V~~~~~l~~~~d~~~~l~ei~rv---LkpGG~l~i~d~~~~  186 (261)
T PLN02233        142 -DDCYFDAITMGYGLRNVVDRLKAMQEMYRV---LKPGSRVSILDFNKS  186 (261)
T ss_pred             -CCCCEeEEEEecccccCCCHHHHHHHHHHH---cCcCcEEEEEECCCC
Confidence             15789999986543   3456677788887   999999988776543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.57  E-value=3.5e-14  Score=124.36  Aligned_cols=103  Identities=21%  Similarity=0.314  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++....++.++++++++|+.+..+..     .++||
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-----~~~fD  114 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-----ETPVD  114 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----CCCCC
Confidence            35679999999999999999985   47999999999999999999999888888999999997754332     57999


Q ss_pred             EEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++....   .+....++.+.++   |||||++++-
T Consensus       115 ~V~~~~vl~~~~~~~~~l~~~~~~---LkpgG~l~i~  148 (255)
T PRK11036        115 LILFHAVLEWVADPKSVLQTLWSV---LRPGGALSLM  148 (255)
T ss_pred             EEEehhHHHhhCCHHHHHHHHHHH---cCCCeEEEEE
Confidence            99988763   3445677777777   9999999764

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.56  E-value=1.7e-14  Score=122.16  Aligned_cols=116  Identities=23%  Similarity=0.382  Sum_probs=91.2

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      ...|..-..+.+++...++.+|||||||+||.+..++..+.+.++|+++|++++..+.|+++++..+.. +++++++|..
T Consensus        55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~  133 (209)
T PF01135_consen   55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGS  133 (209)
T ss_dssp             E--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GG
T ss_pred             chHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchh
Confidence            456666666777777889999999999999999999998876789999999999999999999999987 4999999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .-.+.      ..+||.|++.+.....+.   .+.+.   |++||+||+
T Consensus       134 ~g~~~------~apfD~I~v~~a~~~ip~---~l~~q---L~~gGrLV~  170 (209)
T PF01135_consen  134 EGWPE------EAPFDRIIVTAAVPEIPE---ALLEQ---LKPGGRLVA  170 (209)
T ss_dssp             GTTGG------G-SEEEEEESSBBSS--H---HHHHT---EEEEEEEEE
T ss_pred             hcccc------CCCcCEEEEeeccchHHH---HHHHh---cCCCcEEEE
Confidence            65443      478999999988765543   35566   899999998

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.55  E-value=4.9e-14  Score=120.95  Aligned_cols=123  Identities=19%  Similarity=0.273  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       106 ~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      ..+-+|..++.....++|||+|||+|..++.++++.+ ..++++||+++++.+.|+++++.+++.++++++++|..++.+
T Consensus        31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~  109 (248)
T COG4123          31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLK  109 (248)
T ss_pred             cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhh
Confidence            3456778888887899999999999999999999876 499999999999999999999999999999999999988766


Q ss_pred             HHHhCCCCCceeEEEEcCCc---------------------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          186 ALILNGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~---------------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ...    ..+||+|+++++.                     ....++++.+..+   |||||.+.+  ++.+..
T Consensus       110 ~~~----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~---lk~~G~l~~--V~r~er  174 (248)
T COG4123         110 ALV----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKL---LKPGGRLAF--VHRPER  174 (248)
T ss_pred             ccc----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHH---ccCCCEEEE--EecHHH
Confidence            552    4579999998651                     1145566777777   999999988  544443

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.54  E-value=2.1e-13  Score=121.10  Aligned_cols=119  Identities=17%  Similarity=0.233  Sum_probs=93.0

Q ss_pred             ccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411          102 QVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (282)
                      ...++...++...+.    ..++.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|+++++.+++.+++++++
T Consensus       100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~  178 (284)
T TIGR03533       100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQ  178 (284)
T ss_pred             cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            355666666666543    23467999999999999999999876 6899999999999999999999999888899999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCCcc----------------------------ccHHHHHHHHHhhcCCCCCcEEE
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~----------------------------~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      +|..+.++       .++||+|+++++..                            .+..++..+.++   |+|||.++
T Consensus       179 ~D~~~~~~-------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~---L~~gG~l~  248 (284)
T TIGR03533       179 SDLFAALP-------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADH---LNENGVLV  248 (284)
T ss_pred             CchhhccC-------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHh---cCCCCEEE
Confidence            99865432       35899999985421                            123345555666   99999999


Q ss_pred             Ee
Q 023411          230 ID  231 (282)
Q Consensus       230 ~d  231 (282)
                      ++
T Consensus       249 ~e  250 (284)
T TIGR03533       249 VE  250 (284)
T ss_pred             EE
Confidence            86

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PLN02244 tocopherol O-methyltransferase

Probab=99.53  E-value=5.4e-14  Score=128.08  Aligned_cols=106  Identities=19%  Similarity=0.189  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|.++..+++..  +++|+++|+++.+++.++++.+..++.++++++++|+.+. +.     .+++||
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~-----~~~~FD  188 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PF-----EDGQFD  188 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CC-----CCCCcc
Confidence            467899999999999999999876  4799999999999999999999888888899999998753 21     157999


Q ss_pred             EEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|++.....   +...+++.+.++   |||||.+++.+..
T Consensus       189 ~V~s~~~~~h~~d~~~~l~e~~rv---LkpGG~lvi~~~~  225 (340)
T PLN02244        189 LVWSMESGEHMPDKRKFVQELARV---AAPGGRIIIVTWC  225 (340)
T ss_pred             EEEECCchhccCCHHHHHHHHHHH---cCCCcEEEEEEec
Confidence            999865533   345677888888   9999999987654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.53  E-value=3e-14  Score=120.57  Aligned_cols=105  Identities=19%  Similarity=0.307  Sum_probs=86.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||.|..+..||+.   +++|+|+|+++++++.|+....+.++.  +++.+.++.+....      .++||
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~------~~~FD  126 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA------GGQFD  126 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc------CCCcc
Confidence            57789999999999999999985   589999999999999999999988875  77887777655432      37999


Q ss_pred             EEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          198 FAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       198 lV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      +|+|-...+|   ...++..|.++   +||||++++..+-.+
T Consensus       127 vV~cmEVlEHv~dp~~~~~~c~~l---vkP~G~lf~STinrt  165 (243)
T COG2227         127 VVTCMEVLEHVPDPESFLRACAKL---VKPGGILFLSTINRT  165 (243)
T ss_pred             EEEEhhHHHccCCHHHHHHHHHHH---cCCCcEEEEeccccC
Confidence            9998766444   45577778787   999999999887533

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.53  E-value=4.9e-14  Score=130.01  Aligned_cols=161  Identities=16%  Similarity=0.206  Sum_probs=117.3

Q ss_pred             ccCccccccccccccccccccccCCCChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCE
Q 023411           43 KNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR  122 (282)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~  122 (282)
                      .|+......+...|||.......+.+++.+ .|.+....+.+.+.+.+.....              .+...+...++.+
T Consensus       106 ~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m-~ys~g~~~~~~~L~~Aq~~k~~--------------~l~~~l~l~~g~r  170 (383)
T PRK11705        106 LQSKKRAWIVGKEHYDLGNDLFEAMLDPRM-QYSCGYWKDADTLEEAQEAKLD--------------LICRKLQLKPGMR  170 (383)
T ss_pred             cCChhhHHHhhhhhcCCcHHHHHHhcCCCC-cccccccCCCCCHHHHHHHHHH--------------HHHHHhCCCCCCE
Confidence            455566678888999988877777887775 5655554433344444433322              2333445567889


Q ss_pred             EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEc
Q 023411          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD  202 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id  202 (282)
                      |||||||+|..+..+++..  +++|+++|+|+++++.++++.+  ++  .+++..+|..+.         .++||.|+..
T Consensus       171 VLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~~fD~Ivs~  235 (383)
T PRK11705        171 VLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NGQFDRIVSV  235 (383)
T ss_pred             EEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CCCCCEEEEe
Confidence            9999999999999999875  4799999999999999999874  33  378888887542         3789999865


Q ss_pred             CC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          203 AE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       203 ~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      ..     ..++..+++.+.++   |||||+++++.+..+
T Consensus       236 ~~~ehvg~~~~~~~l~~i~r~---LkpGG~lvl~~i~~~  271 (383)
T PRK11705        236 GMFEHVGPKNYRTYFEVVRRC---LKPDGLFLLHTIGSN  271 (383)
T ss_pred             CchhhCChHHHHHHHHHHHHH---cCCCcEEEEEEccCC
Confidence            43     23456788888888   999999999876443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.53  E-value=8.8e-14  Score=106.87  Aligned_cols=102  Identities=22%  Similarity=0.376  Sum_probs=84.4

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +.+|||+|||+|.+++.+++..  ..+++++|+++..++.++.++...++.++++++++|+.+..+.+.    .++||+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~----~~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP----DGKFDLI   74 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT----TT-EEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc----CceeEEE
Confidence            3589999999999999999886  489999999999999999999999998889999999987653332    6899999


Q ss_pred             EEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          200 FVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       200 ~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +.+.+...           +..+++.+.++   |+|||++++
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~---L~~gG~~~~  113 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARL---LKPGGVLVF  113 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHH---EEEEEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHH---cCCCeEEEE
Confidence            99876321           35678888888   999999876

...

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.52  E-value=4.5e-13  Score=125.90  Aligned_cols=159  Identities=22%  Similarity=0.269  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       106 ~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      ....++..++...++.+|||+|||+|+.+..+++.++..++|+++|+++++++.++++++..|+.+ ++++++|+.+...
T Consensus       239 ~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~  317 (434)
T PRK14901        239 RSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLE  317 (434)
T ss_pred             HHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccc
Confidence            344555556666788999999999999999999987656899999999999999999999999875 9999999876432


Q ss_pred             HHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCccc
Q 023411          186 ALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVA  240 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~  240 (282)
                      ....  ..++||.|++|++...                         ....++.+.++   |||||.||........   
T Consensus       318 ~~~~--~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~---lkpgG~lvystcsi~~---  389 (434)
T PRK14901        318 LKPQ--WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPL---LKPGGTLVYATCTLHP---  389 (434)
T ss_pred             cccc--ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEeCCCCh---
Confidence            1100  0368999999875210                         13345566666   9999999886554322   


Q ss_pred             CCcCCChhhHHHHHHHHHhhhCCCeEEE-----Eeec---CCceEEEEE
Q 023411          241 DQMVNDAKTISIRNFNKNLMEDERVSIS-----MVPI---GDGMTICQK  281 (282)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~lp~---~~Gl~~~~k  281 (282)
                           .++..-+..|++   +.|+++..     ++|-   .||+-+|+-
T Consensus       390 -----~Ene~~v~~~l~---~~~~~~~~~~~~~~~P~~~~~dGfF~a~l  430 (434)
T PRK14901        390 -----AENEAQIEQFLA---RHPDWKLEPPKQKIWPHRQDGDGFFMAVL  430 (434)
T ss_pred             -----hhHHHHHHHHHH---hCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence                 123334556653   46676644     4553   589888863

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.50  E-value=8.7e-13  Score=110.96  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      ++..+....++.+|||+|||+|.+++.++...  ..+|+++|+++++++.++++++.++.. +++++++|+.+.++..  
T Consensus        44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~--  118 (199)
T PRK10909         44 LFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP--  118 (199)
T ss_pred             HHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc--
Confidence            44444444466799999999999999755543  369999999999999999999999875 5999999998765432  


Q ss_pred             CCCCCceeEEEEcCCc-cc-cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          190 NGEASSYDFAFVDAEK-RM-YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~-~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                         .++||+||+|++. .. ....++.+.+ .++|+|+|+++++...
T Consensus       119 ---~~~fDlV~~DPPy~~g~~~~~l~~l~~-~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        119 ---GTPHNVVFVDPPFRKGLLEETINLLED-NGWLADEALIYVESEV  161 (199)
T ss_pred             ---CCCceEEEECCCCCCChHHHHHHHHHH-CCCcCCCcEEEEEecC
Confidence               3579999999993 32 3444555555 5678999999997543

>PRK00811 spermidine synthase; Provisional

Probab=99.50  E-value=1e-12  Score=116.68  Aligned_cols=105  Identities=20%  Similarity=0.290  Sum_probs=85.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C--CCcEEEEEcchhhHHHHHHhCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V--SHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~--~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ..+++||+||||.|..+..++++.+ ..+|++||+++++++.+++++...+  .  +++++++.+|+.+.+...     .
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~  148 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----E  148 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----C
Confidence            4678999999999999999987532 4699999999999999999987532  2  468999999998877652     5


Q ss_pred             CceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++||+|++|...+       ...++++.+.+.   |+|||++++.
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~---L~~gGvlv~~  190 (283)
T PRK00811        149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRA---LKEDGIFVAQ  190 (283)
T ss_pred             CcccEEEECCCCCCCchhhhhHHHHHHHHHHh---cCCCcEEEEe
Confidence            7999999986422       125677888888   9999999974

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.50  E-value=3.5e-13  Score=117.49  Aligned_cols=106  Identities=12%  Similarity=0.216  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++.+|||+|||+|..+..+++.+ .++++++++|+|+++++.|++++...+..++++++++|+.+..        ...+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  126 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IENA  126 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCCC
Confidence            356799999999999999998854 2478999999999999999999998888778999999986542        2468


Q ss_pred             eEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+|++....+     .....++.+.+.   |+|||.+++.+.+
T Consensus       127 D~vv~~~~l~~l~~~~~~~~l~~i~~~---LkpGG~l~l~e~~  166 (247)
T PRK15451        127 SMVVLNFTLQFLEPSERQALLDKIYQG---LNPGGALVLSEKF  166 (247)
T ss_pred             CEEehhhHHHhCCHHHHHHHHHHHHHh---cCCCCEEEEEEec
Confidence            9988754322     235677888888   9999999997754

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.50  E-value=3.7e-13  Score=120.75  Aligned_cols=118  Identities=17%  Similarity=0.236  Sum_probs=91.5

Q ss_pred             cCHHHHHHHHHHHh-h-c--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          103 VSPDQAQLLAMLVQ-I-L--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       103 ~~~~~~~ll~~l~~-~-~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ..++...++...+. . .  ++.+|||+|||+|.+++.++...+ +.+|+++|+|+.+++.|+++++.+++.++++++++
T Consensus       113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~  191 (307)
T PRK11805        113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES  191 (307)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence            45566666665443 1 1  236899999999999999999876 68999999999999999999999998888999999


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCcc----------------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~----------------------------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |..+.++       .++||+|+++++.-                            .+..+++.+.++   |+|||.+++
T Consensus       192 D~~~~l~-------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~---L~pgG~l~~  261 (307)
T PRK11805        192 DLFAALP-------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY---LTEDGVLVV  261 (307)
T ss_pred             chhhhCC-------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh---cCCCCEEEE
Confidence            9865432       35899999985411                            123445666666   999999998


Q ss_pred             e
Q 023411          231 D  231 (282)
Q Consensus       231 d  231 (282)
                      +
T Consensus       262 E  262 (307)
T PRK11805        262 E  262 (307)
T ss_pred             E
Confidence            5

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.50  E-value=9.3e-13  Score=123.42  Aligned_cols=139  Identities=19%  Similarity=0.282  Sum_probs=104.8

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+......++..++...++.+|||+|||+|+.|..++..++.+++|+++|+++++++.++++++..|+.+ ++++++|+.
T Consensus       220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~  298 (431)
T PRK14903        220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAE  298 (431)
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchh
Confidence            3444555666667777888999999999999999999988667899999999999999999999999864 999999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      +.....     .++||.|++|++...                         ....+..+.++   |+|||+|+....-+.
T Consensus       299 ~l~~~~-----~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~---LkpGG~LvYsTCs~~  370 (431)
T PRK14903        299 RLTEYV-----QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL---LEKGGILLYSTCTVT  370 (431)
T ss_pred             hhhhhh-----hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEECCCC
Confidence            643222     468999999976311                         12335555666   999999998766433


Q ss_pred             CcccCCcCCChhhHHHHHHHH
Q 023411          237 GKVADQMVNDAKTISIRNFNK  257 (282)
Q Consensus       237 g~~~~~~~~~~~~~~~~~~~~  257 (282)
                      -        .++..-++.|++
T Consensus       371 ~--------eEne~vv~~fl~  383 (431)
T PRK14903        371 K--------EENTEVVKRFVY  383 (431)
T ss_pred             h--------hhCHHHHHHHHH
Confidence            2        223445666654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.50  E-value=2e-13  Score=122.87  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..+..+++.   +++|+|||+++++++.|+++....+...+++++++++.+.. ..     .++||+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~-----~~~FD~  201 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DE-----GRKFDA  201 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hc-----cCCCCE
Confidence            5569999999999999988863   57999999999999999988776665567999999986542 21     479999


Q ss_pred             EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |++....+   +...+++.+.++   |||||.+++..+-
T Consensus       202 Vi~~~vLeHv~d~~~~L~~l~r~---LkPGG~liist~n  237 (322)
T PLN02396        202 VLSLEVIEHVANPAEFCKSLSAL---TIPNGATVLSTIN  237 (322)
T ss_pred             EEEhhHHHhcCCHHHHHHHHHHH---cCCCcEEEEEECC
Confidence            99876533   456678888887   9999999998653

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.49  E-value=3.3e-13  Score=114.88  Aligned_cols=114  Identities=23%  Similarity=0.334  Sum_probs=93.7

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      ...|.....+..++...++.+|||+|||+|+++..++...   ++++++|+++++++.++++++..++.+ ++++++|..
T Consensus        61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  136 (212)
T PRK00312         61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW  136 (212)
T ss_pred             eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence            4677777777777888888999999999999999888764   489999999999999999999988865 999999986


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +..+.      .++||+|+++......   .+.+.+.   |+|||.+++.
T Consensus       137 ~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~---L~~gG~lv~~  174 (212)
T PRK00312        137 KGWPA------YAPFDRILVTAAAPEI---PRALLEQ---LKEGGILVAP  174 (212)
T ss_pred             cCCCc------CCCcCEEEEccCchhh---hHHHHHh---cCCCcEEEEE
Confidence            53321      3789999999875544   3456677   9999999985

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.49  E-value=2.4e-13  Score=114.57  Aligned_cols=101  Identities=13%  Similarity=0.195  Sum_probs=80.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||+|||+|..+.++++.   +.+|+++|+|+++++.++++....++. +++++.+|..+..  .     .++
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-----~~~   95 (197)
T PRK11207         27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F-----DGE   95 (197)
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c-----CCC
Confidence            3446789999999999999999974   469999999999999999999988875 4888888876531  1     367


Q ss_pred             eeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          196 YDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       196 fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ||+|++....     .....+++.+.++   |+|||++++
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~---LkpgG~~~~  132 (197)
T PRK11207         96 YDFILSTVVLMFLEAKTIPGLIANMQRC---TKPGGYNLI  132 (197)
T ss_pred             cCEEEEecchhhCCHHHHHHHHHHHHHH---cCCCcEEEE
Confidence            9999976542     2345677888888   999998544

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.49  E-value=5.2e-13  Score=112.23  Aligned_cols=105  Identities=16%  Similarity=0.251  Sum_probs=86.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ...+|||||||+|.++..++...| +.+|+++|+++.+++.|+++....++. +++++++|+.+.+.....   .+++|.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~---~~~~d~   90 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFP---DGSLSK   90 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCC---CCceeE
Confidence            456999999999999999999886 789999999999999999999988886 699999999876543321   358999


Q ss_pred             EEEcCC---cc--c------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDAE---KR--M------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~~---~~--~------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+++.+   ..  +      ...+++.+.++   |||||.+++.
T Consensus        91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~---LkpgG~l~~~  131 (194)
T TIGR00091        91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANV---LKKGGVIHFK  131 (194)
T ss_pred             EEEECCCcCCCCCccccccCCHHHHHHHHHH---hCCCCEEEEE
Confidence            998643   11  1      25678888888   9999999773

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.49  E-value=8e-13  Score=124.62  Aligned_cols=124  Identities=22%  Similarity=0.296  Sum_probs=97.8

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+......++...+...++.+|||+|||+|..+..+++.++++++|+++|+++++++.++++++..|+.+ ++++++|+.
T Consensus       233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~  311 (444)
T PRK14902        233 TIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDAR  311 (444)
T ss_pred             EEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcc
Confidence            3444556667767777788999999999999999999987556899999999999999999999999876 999999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +....+     .++||+|++|++...                         ....++.+.++   |||||.|+.....
T Consensus       312 ~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~---LkpGG~lvystcs  381 (444)
T PRK14902        312 KVHEKF-----AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY---LKKGGILVYSTCT  381 (444)
T ss_pred             cccchh-----cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH---cCCCCEEEEEcCC
Confidence            654333     368999999975211                         12345666666   9999999976543

>TIGR00740 methyltransferase, putative

Probab=99.49  E-value=7.8e-13  Score=114.68  Aligned_cols=107  Identities=7%  Similarity=0.082  Sum_probs=86.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      +..+|||+|||+|..+..+++.++ ++++++++|+++++++.|+++++..+...+++++++|+.+..        ...+|
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~d  124 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNAS  124 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCCCC
Confidence            567999999999999999998763 478999999999999999999988776667999999997542        24689


Q ss_pred             EEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          198 FAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       198 lV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      +|++....+     +...+++.+.+.   |+|||.+++.+....
T Consensus       125 ~v~~~~~l~~~~~~~~~~~l~~i~~~---LkpgG~l~i~d~~~~  165 (239)
T TIGR00740       125 MVILNFTLQFLPPEDRIALLTKIYEG---LNPNGVLVLSEKFRF  165 (239)
T ss_pred             EEeeecchhhCCHHHHHHHHHHHHHh---cCCCeEEEEeecccC
Confidence            888765422     234567777777   999999999886543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.48  E-value=1.9e-13  Score=117.17  Aligned_cols=103  Identities=17%  Similarity=0.264  Sum_probs=86.9

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      ++|||||||+|..+..+++..+ +++++++|+|+++++.++++++..|+.++++++.+|+.+..  .     .++||+|+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~-----~~~fD~I~   72 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--F-----PDTYDLVF   72 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--C-----CCCCCEee
Confidence            4799999999999999998875 68999999999999999999999999889999999985431  1     36899999


Q ss_pred             EcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          201 VDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       201 id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +...   ..+...+++.+.++   |+|||.+++.+..
T Consensus        73 ~~~~l~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~  106 (224)
T smart00828       73 GFEVIHHIKDKMDLFSNISRH---LKDGGHLVLADFI  106 (224)
T ss_pred             hHHHHHhCCCHHHHHHHHHHH---cCCCCEEEEEEcc
Confidence            7543   23456788888888   9999999998775

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.48  E-value=1.3e-12  Score=123.24  Aligned_cols=122  Identities=18%  Similarity=0.226  Sum_probs=95.0

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+......+...++...++.+|||+|||+|+.+..+++.++..++|+++|+++++++.++++++..|+. +++++++|+.
T Consensus       233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~  311 (445)
T PRK14904        233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDAR  311 (445)
T ss_pred             EEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccc
Confidence            344445555556666677889999999999999999988765689999999999999999999999986 5999999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +..+       .++||.|++|++...                         ....+..+.++   |+|||++++....
T Consensus       312 ~~~~-------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~---lkpgG~lvystcs  379 (445)
T PRK14904        312 SFSP-------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL---LKPGGVLVYATCS  379 (445)
T ss_pred             cccc-------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEeCC
Confidence            6432       468999999865210                         11345555566   9999999997654

>PRK04266 fibrillarin; Provisional

Probab=99.48  E-value=1.9e-12  Score=111.08  Aligned_cols=108  Identities=12%  Similarity=0.147  Sum_probs=83.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~~  192 (282)
                      +...++.+|||+|||+|..+..+++.++ .++|+++|+++++++.+.++.+..   .++.++.+|+.+..  ..+     
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-----  138 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-----  138 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence            4556788999999999999999999886 789999999999999887776542   35899999986421  112     


Q ss_pred             CCceeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          193 ASSYDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       193 ~~~fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      .++||+||++..... ....++.+.++   |||||.+++. +.|
T Consensus       139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~---LKpGG~lvI~-v~~  178 (226)
T PRK04266        139 VEKVDVIYQDVAQPNQAEIAIDNAEFF---LKDGGYLLLA-IKA  178 (226)
T ss_pred             cccCCEEEECCCChhHHHHHHHHHHHh---cCCCcEEEEE-Eec
Confidence            357999998865322 23346778787   9999999985 444

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.48  E-value=5.2e-13  Score=112.29  Aligned_cols=102  Identities=19%  Similarity=0.240  Sum_probs=79.1

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .+...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++....++.  +++..+|.... + +     .
T Consensus        25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~-----~   92 (195)
T TIGR00477        25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L-----N   92 (195)
T ss_pred             HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c-----c
Confidence            334456779999999999999999974   579999999999999999998887774  77777776432 1 2     3


Q ss_pred             CceeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          194 SSYDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       194 ~~fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++||+|++....     .....+++.+.++   |+|||++++
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~lli  131 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAH---TRPGGYNLI  131 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHH---hCCCcEEEE
Confidence            689999876442     2345678888888   999998554

Part of a tellurite-reducing operon tehA and tehB

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.47  E-value=3.8e-13  Score=118.84  Aligned_cols=113  Identities=16%  Similarity=0.291  Sum_probs=91.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      +...++.+|||||||+|..++.++....+.++|+++|+++++++.|+++....++. +++++.+|+.+. +.     .++
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~~-----~~~  145 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-PV-----ADN  145 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-CC-----CCC
Confidence            34567889999999999999888887665679999999999999999999988875 699999998543 21     146


Q ss_pred             ceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          195 SYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       195 ~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +||+|+.+...   .+....++.+.++   |||||.+++.++...+
T Consensus       146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~---LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        146 SVDVIISNCVINLSPDKERVFKEAFRV---LKPGGRFAISDVVLRG  188 (272)
T ss_pred             ceeEEEEcCcccCCCCHHHHHHHHHHH---cCCCcEEEEEEeeccC
Confidence            89999987653   2345678888888   9999999998876554

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.47  E-value=1.9e-12  Score=113.86  Aligned_cols=119  Identities=16%  Similarity=0.219  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (282)
                      .....+...++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++.+|+.+ ++++++|+.+..
T Consensus        57 d~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~  135 (264)
T TIGR00446        57 EASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFG  135 (264)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhh
Confidence            3333444455566678899999999999999999988756899999999999999999999999864 999999986542


Q ss_pred             HHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          185 KALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      . .     .++||.|++|++...                         ....++.+.++   |||||+||....
T Consensus       136 ~-~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~---lkpgG~lvYstc  200 (264)
T TIGR00446       136 A-A-----VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA---LKPGGVLVYSTC  200 (264)
T ss_pred             h-h-----ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence            2 1     357999999975221                         12355555566   999999987644

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.47  E-value=1.8e-13  Score=119.79  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=78.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|..+..+++..| +++|+++|+++.+++.|++.        +++++++|+.+..+       .++
T Consensus        26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~-------~~~   89 (255)
T PRK14103         26 GAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP-------KPD   89 (255)
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC-------CCC
Confidence            345678999999999999999999876 68999999999999988752        37889999865421       478


Q ss_pred             eeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+|++....   .+....+..+.+.   |||||.+++.
T Consensus        90 fD~v~~~~~l~~~~d~~~~l~~~~~~---LkpgG~l~~~  125 (255)
T PRK14103         90 TDVVVSNAALQWVPEHADLLVRWVDE---LAPGSWIAVQ  125 (255)
T ss_pred             ceEEEEehhhhhCCCHHHHHHHHHHh---CCCCcEEEEE
Confidence            9999997653   3345567777777   9999999985

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.46  E-value=3.9e-13  Score=121.42  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=83.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ....+++|||||||+|+.+..++...+  ..|+|+|+++.++..++...+..+...+++++.+++.+...       .++
T Consensus       119 ~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~  189 (322)
T PRK15068        119 SPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKA  189 (322)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCC
Confidence            334678999999999999999998643  47999999999887655544433334569999998865421       378


Q ss_pred             eeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          196 YDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       196 fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ||+|++.+...+   ....++.+.+.   |+|||.++++....++.
T Consensus       190 FD~V~s~~vl~H~~dp~~~L~~l~~~---LkpGG~lvl~~~~i~~~  232 (322)
T PRK15068        190 FDTVFSMGVLYHRRSPLDHLKQLKDQ---LVPGGELVLETLVIDGD  232 (322)
T ss_pred             cCEEEECChhhccCCHHHHHHHHHHh---cCCCcEEEEEEEEecCC
Confidence            999998766433   45566777776   99999999987765543

>PRK01581 speE spermidine synthase; Validated

Probab=99.46  E-value=2.3e-12  Score=116.36  Aligned_cols=107  Identities=15%  Similarity=0.220  Sum_probs=84.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH-----HHhCC-CCcEEEEEcchhhHHHHHHh
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGV-SHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-----~~~g~-~~~v~~~~gd~~~~l~~l~~  189 (282)
                      ....+++||+||||.|+.+..+++.. +..+|++||+++++++.|++..     ....+ .++++++.+|+.+++...  
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--  223 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--  223 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence            34678899999999999888888753 3579999999999999999732     11122 468999999999887654  


Q ss_pred             CCCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          190 NGEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                         .++||+||+|.....        ..++++.+.+.   |+|||++++.
T Consensus       224 ---~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~---LkPgGV~V~Q  267 (374)
T PRK01581        224 ---SSLYDVIIIDFPDPATELLSTLYTSELFARIATF---LTEDGAFVCQ  267 (374)
T ss_pred             ---CCCccEEEEcCCCccccchhhhhHHHHHHHHHHh---cCCCcEEEEe
Confidence               578999999964221        25578888888   9999999886

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.46  E-value=2.3e-12  Score=120.87  Aligned_cols=158  Identities=18%  Similarity=0.268  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (282)
                      .....++...+...++.+|||+|||+|+.+..+++.++ +++|+++|+++++++.++++++..|+..++++..+|..+..
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~  302 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS  302 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence            34556666667777889999999999999999999887 78999999999999999999999998744555777765322


Q ss_pred             HHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411          185 KALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV  239 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~  239 (282)
                      ...    ..++||.|++|++...                         ....++.+.++   |||||.||....-+... 
T Consensus       303 ~~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~---LkpgG~lvystcs~~~~-  374 (426)
T TIGR00563       303 QWA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPL---LKTGGTLVYATCSVLPE-  374 (426)
T ss_pred             ccc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEeCCCChh-
Confidence            100    1468999999865211                         13456666666   99999999976644322 


Q ss_pred             cCCcCCChhhHHHHHHHHHhhhCCCeE--------------EEEeec---CCceEEEEE
Q 023411          240 ADQMVNDAKTISIRNFNKNLMEDERVS--------------ISMVPI---GDGMTICQK  281 (282)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~lp~---~~Gl~~~~k  281 (282)
                             ++..-++.|++.   .|++.              ..++|-   +||+-+|+-
T Consensus       375 -------Ene~~v~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l  423 (426)
T TIGR00563       375 -------ENSEQIKAFLQE---HPDFPFEKTGTPEQVRDGGLQILPHAEEGDGFFYAKL  423 (426)
T ss_pred             -------hCHHHHHHHHHh---CCCCeeccCCCccccCCCcEEECCCCCCCCCeEEEEE
Confidence                   233445666643   33332              234563   588888764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.46  E-value=2.6e-13  Score=118.85  Aligned_cols=99  Identities=16%  Similarity=0.258  Sum_probs=80.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|.++..+++..+ +++|+++|+++.+++.+++++      .+++++.+|+.+..+       .++
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-------~~~   93 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-------PQA   93 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-------CCC
Confidence            345678999999999999999998876 689999999999999998764      248899999865422       469


Q ss_pred             eeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+|++....+   +...+++.+.++   |+|||.+++.
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~---LkpgG~~~~~  129 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSL---LAPGGVLAVQ  129 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHh---cCCCcEEEEE
Confidence            99999876633   455677777777   9999999985

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.46  E-value=7.8e-13  Score=121.14  Aligned_cols=110  Identities=10%  Similarity=0.103  Sum_probs=84.7

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC--CcEEEEEcchhhHHHHHH
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALI  188 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~l~~l~  188 (282)
                      +...+......+|||+|||+|.+++.+++..| ..+|+++|+|+.+++.++++++.++..  .+++++.+|..+..+   
T Consensus       220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~---  295 (378)
T PRK15001        220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE---  295 (378)
T ss_pred             HHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC---
Confidence            33333333446999999999999999999876 789999999999999999999888754  368999888764321   


Q ss_pred             hCCCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          189 LNGEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                          .++||+|+++.+.+.        ...++..+.+.   |+|||.+.+-
T Consensus       296 ----~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~---LkpGG~L~iV  339 (378)
T PRK15001        296 ----PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC---LKINGELYIV  339 (378)
T ss_pred             ----CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHh---cccCCEEEEE
Confidence                468999999866321        23456666676   9999988774

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.46  E-value=6e-14  Score=106.27  Aligned_cols=102  Identities=30%  Similarity=0.489  Sum_probs=50.6

Q ss_pred             EEEcccccHHHHHHHHHCCCCC--EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       124 LEIG~G~G~~t~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      ||||+..|.++.++++.+++.+  +++++|..+. .+.+++.++..++.+++++++++..+.++.+.    .++||++|+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence            7999999999999999887554  7999999985 44555666667788889999999999888774    379999999


Q ss_pred             cCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          202 DAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       202 d~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+.+  +.....++.+.+.   |+|||++++||+
T Consensus        76 Dg~H~~~~~~~dl~~~~~~---l~~ggviv~dD~  106 (106)
T PF13578_consen   76 DGDHSYEAVLRDLENALPR---LAPGGVIVFDDY  106 (106)
T ss_dssp             ES---HHHHHHHHHHHGGG---EEEEEEEEEE--
T ss_pred             CCCCCHHHHHHHHHHHHHH---cCCCeEEEEeCc
Confidence            9874  4566678888888   999999999985

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.46  E-value=3.3e-12  Score=105.87  Aligned_cols=108  Identities=12%  Similarity=0.225  Sum_probs=84.2

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      .++.......++++|||+|||+|.++..++...   .+|+++|+++++++.++++++.++.  +++++++|..+..    
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV----   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence            455555556677899999999999999999853   3899999999999999999988775  4889999986532    


Q ss_pred             hCCCCCceeEEEEcCCccc------------------------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          189 LNGEASSYDFAFVDAEKRM------------------------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~------------------------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                          .++||+|+++.+...                        ...+++.+.++   |+|||.+++-.
T Consensus        80 ----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---Lk~gG~~~~~~  140 (179)
T TIGR00537        80 ----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEI---LKEGGRVQLIQ  140 (179)
T ss_pred             ----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHh---hCCCCEEEEEE
Confidence                368999998754210                        23456667777   99999988744

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.45  E-value=1.2e-12  Score=117.83  Aligned_cols=115  Identities=24%  Similarity=0.369  Sum_probs=89.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      .|.....+...+...++.+|||||||+|+.+..+++..+..++|+++|+++++++.|+++++..|.. +++++++|+.+.
T Consensus        65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~  143 (322)
T PRK13943         65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYG  143 (322)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhc
Confidence            4444444444455667789999999999999999998764578999999999999999999998875 599999998654


Q ss_pred             HHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+.      ..+||+|+++....+.+   ..+.+.   |+|||.+++.
T Consensus       144 ~~~------~~~fD~Ii~~~g~~~ip---~~~~~~---LkpgG~Lvv~  179 (322)
T PRK13943        144 VPE------FAPYDVIFVTVGVDEVP---ETWFTQ---LKEGGRVIVP  179 (322)
T ss_pred             ccc------cCCccEEEECCchHHhH---HHHHHh---cCCCCEEEEE
Confidence            432      36799999987655433   345566   9999998874

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.45  E-value=2.5e-12  Score=117.75  Aligned_cols=117  Identities=24%  Similarity=0.341  Sum_probs=96.9

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      +.....+++||++-|+||.++++.|..   ++ +||+||.|...+++|++|++.+|+. .++.++++|+.+++......+
T Consensus       212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g  288 (393)
T COG1092         212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRG  288 (393)
T ss_pred             HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcC
Confidence            444556899999999999999999975   44 9999999999999999999999985 568999999999998876543


Q ss_pred             CCCceeEEEEcCC------------ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          192 EASSYDFAFVDAE------------KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       192 ~~~~fDlV~id~~------------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                        .+||+||+|++            ..+|......+.++   |+|||++++.+...+..
T Consensus       289 --~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~i---L~pgG~l~~~s~~~~~~  342 (393)
T COG1092         289 --EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRL---LAPGGTLVTSSCSRHFS  342 (393)
T ss_pred             --CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHH---cCCCCEEEEEecCCccC
Confidence              69999999987            12355566666677   99999999987765554

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.45  E-value=1.7e-12  Score=120.15  Aligned_cols=110  Identities=19%  Similarity=0.294  Sum_probs=87.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++++|||+|||+|.+++.++..  ...+|+++|+++.+++.|++|++.+++. ++++++++|+.+.+..+...  .+
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~--~~  292 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GE  292 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc--CC
Confidence            3456789999999999999876642  2359999999999999999999999986 47999999999887665322  35


Q ss_pred             ceeEEEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 SYDFAFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +||+||+|++.            ..+..++..+.++   |+|||+++.-.
T Consensus       293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~l---Lk~gG~lv~~s  339 (396)
T PRK15128        293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL---LNPGGILLTFS  339 (396)
T ss_pred             CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHH---cCCCeEEEEEe
Confidence            89999999773            1244455566677   99999998744

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.45  E-value=1.5e-12  Score=115.71  Aligned_cols=121  Identities=17%  Similarity=0.294  Sum_probs=91.8

Q ss_pred             cCHHHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          103 VSPDQAQLLAMLVQI---LGA-QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~---~~~-~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ..++...++......   ..+ .+|||+|||+|.+++.++...+ +.+|+++|+|+++++.|+++++.+++.++++++++
T Consensus        94 Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~  172 (284)
T TIGR00536        94 PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS  172 (284)
T ss_pred             CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            345556665554432   222 6999999999999999999876 68999999999999999999999998778999999


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCcc----------------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~----------------------------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |..+.++       ..+||+|+++.+.-                            .+..++..+.++   |+|||++++
T Consensus       173 d~~~~~~-------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~---L~~gG~l~~  242 (284)
T TIGR00536       173 NLFEPLA-------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY---LKPNGFLVC  242 (284)
T ss_pred             chhccCc-------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh---ccCCCEEEE
Confidence            9876332       24899999875410                            133455555566   999999998


Q ss_pred             eCCC
Q 023411          231 DNVL  234 (282)
Q Consensus       231 dd~~  234 (282)
                      .-..
T Consensus       243 e~g~  246 (284)
T TIGR00536       243 EIGN  246 (284)
T ss_pred             EECc
Confidence            6443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.45  E-value=2.5e-12  Score=114.56  Aligned_cols=104  Identities=21%  Similarity=0.338  Sum_probs=85.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++++|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++..+++.+++.+..++....   .     .++||
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~-----~~~fD  227 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---I-----EGKAD  227 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---c-----CCCce
Confidence            46789999999999999888764 3 3689999999999999999999999887788877763221   1     47899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|+++........++..+.++   |+|||.+++..+.
T Consensus       228 lVvan~~~~~l~~ll~~~~~~---LkpgG~li~sgi~  261 (288)
T TIGR00406       228 VIVANILAEVIKELYPQFSRL---VKPGGWLILSGIL  261 (288)
T ss_pred             EEEEecCHHHHHHHHHHHHHH---cCCCcEEEEEeCc
Confidence            999987766666777888888   9999999998764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.44  E-value=8.5e-14  Score=102.26  Aligned_cols=92  Identities=22%  Similarity=0.313  Sum_probs=72.6

Q ss_pred             EEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC
Q 023411          124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (282)
Q Consensus       124 LEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~  203 (282)
                      ||+|||+|..+..+++. + ..+|+++|+++++++.+++....    ..+.++++|..+. +..     +++||+|++..
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~~-----~~sfD~v~~~~   68 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-PFP-----DNSFDVVFSNS   68 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-SS------TT-EEEEEEES
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-ccc-----ccccccccccc
Confidence            79999999999999997 3 68999999999999999987763    3466999998765 221     68999999876


Q ss_pred             Cc---cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          204 EK---RMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       204 ~~---~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..   ++...+++++.++   |||||++++
T Consensus        69 ~~~~~~~~~~~l~e~~rv---Lk~gG~l~~   95 (95)
T PF08241_consen   69 VLHHLEDPEAALREIYRV---LKPGGRLVI   95 (95)
T ss_dssp             HGGGSSHHHHHHHHHHHH---EEEEEEEEE
T ss_pred             ceeeccCHHHHHHHHHHH---cCcCeEEeC
Confidence            64   3456678888888   999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.44  E-value=5.2e-12  Score=118.46  Aligned_cols=121  Identities=23%  Similarity=0.320  Sum_probs=93.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      ......++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.++++++..|+.  ++++++|+.+.
T Consensus       229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~  305 (427)
T PRK10901        229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDP  305 (427)
T ss_pred             ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccc
Confidence            444455566666777889999999999999999999875 489999999999999999999998875  68999998754


Q ss_pred             HHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          184 LKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ....    ..++||.|++|++...                         ....+..+.++   |+|||.+++....
T Consensus       306 ~~~~----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~---LkpGG~lvystcs  374 (427)
T PRK10901        306 AQWW----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPL---LKPGGTLLYATCS  374 (427)
T ss_pred             hhhc----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEeCC
Confidence            2211    1368999999875221                         12355566666   9999999986653

>PLN02366 spermidine synthase

Probab=99.44  E-value=6.1e-12  Score=112.60  Aligned_cols=107  Identities=23%  Similarity=0.374  Sum_probs=86.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHHhCCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...+++||+||||.|..+.+++++ +...+|+.||+++++++.+++.+...+  + ++|++++.+|+.+.+....    .
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~----~  163 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP----E  163 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc----C
Confidence            356889999999999999999986 434789999999999999999987532  2 4589999999988776431    3


Q ss_pred             CceeEEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++||+||+|...+.       ..++++.+.+.   |+|||+++..
T Consensus       164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~---L~pgGvlv~q  205 (308)
T PLN02366        164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARA---LRPGGVVCTQ  205 (308)
T ss_pred             CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHh---cCCCcEEEEC
Confidence            68999999976321       34678888888   9999999875

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.44  E-value=4.8e-13  Score=100.35  Aligned_cols=93  Identities=23%  Similarity=0.341  Sum_probs=71.7

Q ss_pred             EEEEcccccHHHHHHHHHCCC--CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          123 CIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      |||+|||+|..+..+++.++.  ..+++++|+++++++.++++....+.  +++++++|+.+. +..     .++||+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~-----~~~~D~v~   72 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS-----DGKFDLVV   72 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH-----SSSEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc-----CCCeeEEE
Confidence            799999999999999998732  37999999999999999999988666  589999999875 333     67999999


Q ss_pred             Ec-CC-----ccccHHHHHHHHHhhcCCCCCc
Q 023411          201 VD-AE-----KRMYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       201 id-~~-----~~~~~~~l~~~~~~~~~LkpgG  226 (282)
                      +. ..     .+....+++.+.++   |+|||
T Consensus        73 ~~~~~~~~~~~~~~~~ll~~~~~~---l~pgG  101 (101)
T PF13649_consen   73 CSGLSLHHLSPEELEALLRRIARL---LRPGG  101 (101)
T ss_dssp             E-TTGGGGSSHHHHHHHHHHHHHT---EEEEE
T ss_pred             EcCCccCCCCHHHHHHHHHHHHHH---hCCCC
Confidence            94 32     22345567777777   99998

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.43  E-value=6.9e-12  Score=104.88  Aligned_cols=113  Identities=13%  Similarity=0.052  Sum_probs=89.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ...+.+|||++||+|.+++.++++..  .+|++||.++.+++.++++++.++..++++++++|+.+.+..+...  ...|
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~--~~~~  122 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK--PTFD  122 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc--CCCc
Confidence            34677999999999999999998643  4899999999999999999999998878999999998776543211  2358


Q ss_pred             eEEEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEKR--MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+||.|++..  .+...++.+.. ..+|+++|++|++...
T Consensus       123 dvv~~DPPy~~~~~~~~l~~l~~-~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       123 NVIYLDPPFFNGALQALLELCEN-NWILEDTVLIVVEEDR  161 (189)
T ss_pred             eEEEECcCCCCCcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence            9999999854  24445555554 5679999999997543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.43  E-value=2.2e-13  Score=112.93  Aligned_cols=102  Identities=16%  Similarity=0.212  Sum_probs=85.7

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      +...++.+|.|+|||+|.+|..+++++| ++.++|+|-|++|++.|++...      +++|..+|..++-+       +.
T Consensus        26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~p-------~~   91 (257)
T COG4106          26 VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWKP-------EQ   91 (257)
T ss_pred             CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcCC-------CC
Confidence            3456788999999999999999999998 8999999999999999977542      48999999987754       57


Q ss_pred             ceeEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..|++|.++.   ..+....+..+...   |.|||+|.++-.
T Consensus        92 ~~dllfaNAvlqWlpdH~~ll~rL~~~---L~Pgg~LAVQmP  130 (257)
T COG4106          92 PTDLLFANAVLQWLPDHPELLPRLVSQ---LAPGGVLAVQMP  130 (257)
T ss_pred             ccchhhhhhhhhhccccHHHHHHHHHh---hCCCceEEEECC
Confidence            8999999876   45566677777777   999999998744

>PRK08317 hypothetical protein; Provisional

Probab=99.43  E-value=3.9e-12  Score=109.40  Aligned_cols=117  Identities=21%  Similarity=0.275  Sum_probs=90.4

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       112 ~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      .......++.+|||+|||+|.++..++..+++.++++++|+++.+++.++++..  ....+++++.+|+.+.. .     
T Consensus        12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~-~-----   83 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP-F-----   83 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC-C-----
Confidence            344455677899999999999999999987547899999999999999988733  23346899998875431 1     


Q ss_pred             CCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411          192 EASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV  239 (282)
Q Consensus       192 ~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~  239 (282)
                      ..++||+|++....   .+....++.+.++   |+|||.+++....|....
T Consensus        84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~~~~~~~~  131 (241)
T PRK08317         84 PDGSFDAVRSDRVLQHLEDPARALAEIARV---LRPGGRVVVLDTDWDTLV  131 (241)
T ss_pred             CCCCceEEEEechhhccCCHHHHHHHHHHH---hcCCcEEEEEecCCCcee
Confidence            14789999987653   3456678888888   999999999877665543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.43  E-value=8.9e-12  Score=108.81  Aligned_cols=98  Identities=22%  Similarity=0.336  Sum_probs=78.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..++.+++. + ..+|+++|+|+.+++.|++++..+++.+++.+..+              +.+||
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------------~~~fD  181 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------------DLKAD  181 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------------CCCcC
Confidence            47789999999999999887764 3 24799999999999999999998887554554322              12799


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|+++........+++.+.++   |+|||++++.++.
T Consensus       182 ~Vvani~~~~~~~l~~~~~~~---LkpgG~lilsgi~  215 (250)
T PRK00517        182 VIVANILANPLLELAPDLARL---LKPGGRLILSGIL  215 (250)
T ss_pred             EEEEcCcHHHHHHHHHHHHHh---cCCCcEEEEEECc
Confidence            999987666566777888888   9999999998664

>TIGR00417 speE spermidine synthase

Probab=99.42  E-value=9.9e-12  Score=109.75  Aligned_cols=105  Identities=17%  Similarity=0.241  Sum_probs=84.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC---CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+.   ..+++++.+|+.+.+...     .+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~  144 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----EN  144 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CC
Confidence            4567999999999999998887643 46899999999999999998865431   357899999998877654     57


Q ss_pred             ceeEEEEcCCcc-----c--cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKR-----M--YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~-----~--~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +||+|++|....     .  ...+++.+.++   |+|||++++.
T Consensus       145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~---L~pgG~lv~~  185 (270)
T TIGR00417       145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKA---LNEDGIFVAQ  185 (270)
T ss_pred             CccEEEEeCCCCCCcccchhHHHHHHHHHHH---hCCCcEEEEc
Confidence            999999987521     1  35677888888   9999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.42  E-value=1.3e-12  Score=114.99  Aligned_cols=110  Identities=11%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ..+...++.+|||||||+|..+..++...  +++|+++|+++.+++.++++...   .++++++++|+.+. + .    .
T Consensus        46 ~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~----~  114 (263)
T PTZ00098         46 SDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F----P  114 (263)
T ss_pred             HhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C----C
Confidence            33456678899999999999999998754  47999999999999999987653   35699999998642 1 1    1


Q ss_pred             CCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          193 ASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       193 ~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      +++||+|++...     ..+....++.+.++   |||||.+++.+....
T Consensus       115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~---LkPGG~lvi~d~~~~  160 (263)
T PTZ00098        115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKW---LKPNGILLITDYCAD  160 (263)
T ss_pred             CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHH---cCCCcEEEEEEeccc
Confidence            478999998432     12455677788787   999999999887544

>TIGR00452 methyltransferase, putative

Probab=99.41  E-value=1.3e-12  Score=117.20  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=80.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++++|||||||+|+.+..++...+  ..|+|+|+|+.++..++..-+..+...++.+..+++.+...       ..+|
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~F  189 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAF  189 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCc
Confidence            35678999999999999988887532  47999999999987654433333334568888888754321       3589


Q ss_pred             eEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          197 DFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       197 DlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      |+||+.+...+   ....++.+.+.   |+|||.|+++.....|.
T Consensus       190 D~V~s~gvL~H~~dp~~~L~el~r~---LkpGG~Lvletl~i~g~  231 (314)
T TIGR00452       190 DTVFSMGVLYHRKSPLEHLKQLKHQ---LVIKGELVLETLVIDGD  231 (314)
T ss_pred             CEEEEcchhhccCCHHHHHHHHHHh---cCCCCEEEEEEEEecCc
Confidence            99998876433   44566777776   99999999987665543

Known examples to date are restricted to the proteobacteria.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.41  E-value=3.4e-12  Score=126.36  Aligned_cols=111  Identities=21%  Similarity=0.281  Sum_probs=90.5

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCC
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      +....++++|||+|||+|.++++++.. + ..+|++||+|+.+++.|++|++.+++. ++++++++|+.+.+...     
T Consensus       533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-----  605 (702)
T PRK11783        533 IGQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-----  605 (702)
T ss_pred             HHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence            334456889999999999999999985 2 247999999999999999999999987 68999999998877654     


Q ss_pred             CCceeEEEEcCCc--------------cccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          193 ASSYDFAFVDAEK--------------RMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       193 ~~~fDlV~id~~~--------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .++||+||+|++.              ..+...+..+.++   |+|||++++....
T Consensus       606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~l---L~~gG~l~~~~~~  658 (702)
T PRK11783        606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRL---LRPGGTLYFSNNK  658 (702)
T ss_pred             CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHH---cCCCCEEEEEeCC
Confidence            4689999999762              1234556666677   9999999887553

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.40  E-value=6.6e-14  Score=104.55  Aligned_cols=99  Identities=17%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             EEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC
Q 023411          124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (282)
Q Consensus       124 LEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~  203 (282)
                      ||||||+|..+..++...+ ..+++++|+|+.+++.+++++...+... ......+..+.....    ..++||+|++..
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~fD~V~~~~   74 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD----PPESFDLVVASN   74 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc----cccccceehhhh
Confidence            7999999999999999985 7899999999999999999998876543 444444443332211    025999999887


Q ss_pred             CccccHHHHHHHHHhhcCCCCCcEE
Q 023411          204 EKRMYQEYFELLLQLLLQIRVGGII  228 (282)
Q Consensus       204 ~~~~~~~~l~~~~~~~~~LkpgG~l  228 (282)
                      ..++..+.-..+.++.++|+|||+|
T Consensus        75 vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   75 VLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            7554433333334444449999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14968 putative methyltransferase; Provisional

Probab=99.40  E-value=5.8e-12  Score=104.70  Aligned_cols=110  Identities=16%  Similarity=0.225  Sum_probs=84.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc-EEEEEcchhhHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKAL  187 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~~l  187 (282)
                      .++.......++++|||+|||+|.++..++..   +.+++++|+++++++.+++++..+++.++ +.++++|..+.+.  
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--   87 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--   87 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence            33444444467789999999999999999986   47999999999999999999998887655 8899998765332  


Q ss_pred             HhCCCCCceeEEEEcCCccc------------------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          188 ILNGEASSYDFAFVDAEKRM------------------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~~~------------------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                           ..+||+|+.+.+...                        ...+++.+.++   |+|||.+++-
T Consensus        88 -----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---Lk~gG~~~~~  147 (188)
T PRK14968         88 -----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRY---LKPGGRILLL  147 (188)
T ss_pred             -----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHh---cCCCeEEEEE
Confidence                 358999998754211                        23456777777   9999988763

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.40  E-value=3.2e-12  Score=114.84  Aligned_cols=115  Identities=15%  Similarity=0.103  Sum_probs=91.5

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      .+.......+..+|||||||+|..+..+++..| +.+++++|. |++++.+++++...|+.++++++.+|+.+..     
T Consensus       140 ~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-----  212 (306)
T TIGR02716       140 LLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-----  212 (306)
T ss_pred             HHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-----
Confidence            344444556778999999999999999999987 789999998 7899999999999999999999999987521     


Q ss_pred             CCCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          190 NGEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                         ...+|+|++....++     ....++.+.+.   |+|||.+++.+..++.
T Consensus       213 ---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~---L~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       213 ---YPEADAVLFCRILYSANEQLSTIMCKKAFDA---MRSGGRLLILDMVIDD  259 (306)
T ss_pred             ---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHh---cCCCCEEEEEEeccCC
Confidence               134699887654332     23467777777   9999999998887654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.40  E-value=3e-12  Score=122.23  Aligned_cols=101  Identities=20%  Similarity=0.320  Sum_probs=81.5

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +.+|||+|||+|.+++.++...+ +++|+++|+|+.+++.|++++..+++.++++++++|..+.++       .++||+|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlI  210 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFI  210 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEE
Confidence            46899999999999999998876 689999999999999999999999988889999999865322       3689999


Q ss_pred             EEcCCcc-----------------------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVDAEKR-----------------------------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id~~~~-----------------------------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +++.+.-                             .+..+++.+.++   |+|||.+++.
T Consensus       211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~---L~~gG~l~lE  268 (506)
T PRK01544        211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQF---LKPNGKIILE  268 (506)
T ss_pred             EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHh---ccCCCEEEEE
Confidence            9875410                             122234445555   9999999986

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.39  E-value=7.1e-12  Score=111.21  Aligned_cols=135  Identities=18%  Similarity=0.282  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411          107 QAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       107 ~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      +...+..+... .++++|||+|||+|..++..++. + ..+|+++|++|.+++.|++|++.+++.+++.+.  ...+.. 
T Consensus       148 T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~-  222 (295)
T PF06325_consen  148 TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLV-  222 (295)
T ss_dssp             HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTC-
T ss_pred             HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecccc-
Confidence            33344444443 46789999999999999988874 3 368999999999999999999999999877663  111111 


Q ss_pred             HHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCe
Q 023411          186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERV  265 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (282)
                             .++||+|+.+-...-.......+.++   |+|||++++..++-...              .++.+.+. . ++
T Consensus       223 -------~~~~dlvvANI~~~vL~~l~~~~~~~---l~~~G~lIlSGIl~~~~--------------~~v~~a~~-~-g~  276 (295)
T PF06325_consen  223 -------EGKFDLVVANILADVLLELAPDIASL---LKPGGYLILSGILEEQE--------------DEVIEAYK-Q-GF  276 (295)
T ss_dssp             -------CS-EEEEEEES-HHHHHHHHHHCHHH---EEEEEEEEEEEEEGGGH--------------HHHHHHHH-T-TE
T ss_pred             -------cccCCEEEECCCHHHHHHHHHHHHHh---hCCCCEEEEccccHHHH--------------HHHHHHHH-C-CC
Confidence                   48999999988776666777777777   99999999987764332              34444443 3 77


Q ss_pred             EEEEeec
Q 023411          266 SISMVPI  272 (282)
Q Consensus       266 ~~~~lp~  272 (282)
                      .......
T Consensus       277 ~~~~~~~  283 (295)
T PF06325_consen  277 ELVEERE  283 (295)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7765443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.38  E-value=9.6e-12  Score=108.23  Aligned_cols=116  Identities=22%  Similarity=0.387  Sum_probs=88.5

Q ss_pred             CHHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          104 SPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+....++..+....  .+.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++. +++++++|+.
T Consensus        70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~  147 (251)
T TIGR03534        70 RPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF  147 (251)
T ss_pred             CCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence            344445555444432  345899999999999999999876 679999999999999999999988886 5999999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc-----------------------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM-----------------------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~-----------------------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +..+       .++||+|+++.+...                             +..+++.+.++   |+|||.+++.
T Consensus       148 ~~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~---L~~gG~~~~~  216 (251)
T TIGR03534       148 EPLP-------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRL---LKPGGWLLLE  216 (251)
T ss_pred             ccCc-------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHh---cccCCEEEEE
Confidence            6332       478999999754211                             12345566666   9999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.38  E-value=8.2e-12  Score=105.72  Aligned_cols=105  Identities=18%  Similarity=0.223  Sum_probs=78.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||+|||+|..+..+++..+ +.+++|+|+|+++++.|+++..      +++++++|+.+  +..     +++
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~--~~~-----~~s  105 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD--PFK-----DNF  105 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC--CCC-----CCC
Confidence            345677999999999999999998775 6899999999999999987642      36788888765  211     579


Q ss_pred             eeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411          196 YDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV  239 (282)
Q Consensus       196 fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~  239 (282)
                      ||+|++.....+     ....++.+.++   +  ++++++.+..-+..+
T Consensus       106 fD~V~~~~vL~hl~p~~~~~~l~el~r~---~--~~~v~i~e~~~~~~~  149 (204)
T TIGR03587       106 FDLVLTKGVLIHINPDNLPTAYRELYRC---S--NRYILIAEYYNPSPV  149 (204)
T ss_pred             EEEEEECChhhhCCHHHHHHHHHHHHhh---c--CcEEEEEEeeCCCce
Confidence            999998776433     23445555554   5  568888777655543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.38  E-value=4e-12  Score=109.53  Aligned_cols=108  Identities=18%  Similarity=0.243  Sum_probs=87.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...+++++.+|+.+...      ..++|
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~  122 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSF  122 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCc
Confidence            345679999999999999999998764689999999999999999998876666779999999865421      14789


Q ss_pred             eEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          197 DFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       197 DlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+|++...   ..+....++.+.++   |+|||.+++-+.
T Consensus       123 D~I~~~~~l~~~~~~~~~l~~~~~~---L~~gG~li~~~~  159 (239)
T PRK00216        123 DAVTIAFGLRNVPDIDKALREMYRV---LKPGGRLVILEF  159 (239)
T ss_pred             cEEEEecccccCCCHHHHHHHHHHh---ccCCcEEEEEEe
Confidence            99998654   33456677777777   999999887554

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.38  E-value=8.4e-12  Score=114.09  Aligned_cols=104  Identities=21%  Similarity=0.221  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ..+..+||||||+|.+++.+|...| +..++|+|+++.+++.+.+++...++.+ +.++++|+.+.+..+.    ++++|
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~----~~s~D  194 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLP----SNSVE  194 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCC----CCcee
Confidence            3456899999999999999999986 7899999999999999999999999875 9999999976554332    58999


Q ss_pred             EEEEcCC---ccc------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAE---KRM------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~---~~~------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .|++..+   ...      ...+++.+.++   |+|||.+.+
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~Rv---LkpGG~l~l  233 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRV---LKPGGTLEL  233 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHH---cCCCcEEEE
Confidence            9998533   111      25678888888   999998877

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.37  E-value=4.6e-12  Score=112.84  Aligned_cols=98  Identities=17%  Similarity=0.245  Sum_probs=79.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+.++++.   +.+|+++|+|+.+++.++++.+..++  ++++..+|..+..  +     .++||
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~-----~~~fD  186 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I-----QEEYD  186 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c-----cCCcc
Confidence            45679999999999999999974   57999999999999999999988887  4888888875421  1     47899


Q ss_pred             EEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|++....     .....+++.+.++   |+|||++++
T Consensus       187 ~I~~~~vl~~l~~~~~~~~l~~~~~~---LkpgG~~l~  221 (287)
T PRK12335        187 FILSTVVLMFLNRERIPAIIKNMQEH---TNPGGYNLI  221 (287)
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHh---cCCCcEEEE
Confidence            99986542     3456678888888   999998655

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=3e-12  Score=112.82  Aligned_cols=105  Identities=19%  Similarity=0.279  Sum_probs=82.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++++|||+|||+|..++..++--  ..+++|+|++|.+++.+++|+..+++...++....+..+...       .++||
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~-------~~~~D  231 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE-------NGPFD  231 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc-------cCccc
Confidence            488999999999999999988743  367999999999999999999999987533333333332221       36999


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|+++--.+-.......+.++   ++|||++++..++
T Consensus       232 vIVANILA~vl~~La~~~~~~---lkpgg~lIlSGIl  265 (300)
T COG2264         232 VIVANILAEVLVELAPDIKRL---LKPGGRLILSGIL  265 (300)
T ss_pred             EEEehhhHHHHHHHHHHHHHH---cCCCceEEEEeeh
Confidence            999987655556677777777   9999999998765

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.37  E-value=1.2e-11  Score=102.86  Aligned_cols=129  Identities=21%  Similarity=0.293  Sum_probs=95.9

Q ss_pred             CccCHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          101 MQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      |..+.....+...+... ..+.+|||+.||+|..++..+++-  ..+|+.||.++..+...++|++..+..++++++.+|
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d  100 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD  100 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence            44455555556666655 688899999999999999888763  269999999999999999999999999889999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCcccc---HHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKRMY---QEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~~---~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +...+......  ..+||+||+|++....   ...++.+.+ ..+|+++|+++++.-.
T Consensus       101 ~~~~l~~~~~~--~~~fDiIflDPPY~~~~~~~~~l~~l~~-~~~l~~~~~ii~E~~~  155 (183)
T PF03602_consen  101 AFKFLLKLAKK--GEKFDIIFLDPPYAKGLYYEELLELLAE-NNLLNEDGLIIIEHSK  155 (183)
T ss_dssp             HHHHHHHHHHC--TS-EEEEEE--STTSCHHHHHHHHHHHH-TTSEEEEEEEEEEEET
T ss_pred             HHHHHHhhccc--CCCceEEEECCCcccchHHHHHHHHHHH-CCCCCCCEEEEEEecC
Confidence            98887766433  4899999999985543   456666654 4679999999997543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.37  E-value=3.1e-12  Score=121.72  Aligned_cols=109  Identities=14%  Similarity=0.193  Sum_probs=86.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      +...++.+|||||||+|..+..++...  +++|+|+|+|+++++.|+++..  +...+++++++|..+..  ++    ++
T Consensus       262 ~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~~----~~  331 (475)
T PLN02336        262 LDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--YP----DN  331 (475)
T ss_pred             cCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--CC----CC
Confidence            345567899999999999999999875  4799999999999999998765  44557999999986531  11    46


Q ss_pred             ceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          195 SYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       195 ~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      +||+|++.....   +...+++.+.++   |+|||.+++.+....
T Consensus       332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~---LkpgG~l~i~~~~~~  373 (475)
T PLN02336        332 SFDVIYSRDTILHIQDKPALFRSFFKW---LKPGGKVLISDYCRS  373 (475)
T ss_pred             CEEEEEECCcccccCCHHHHHHHHHHH---cCCCeEEEEEEeccC
Confidence            899999875533   345677777777   999999999876543

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.37  E-value=4.4e-11  Score=99.70  Aligned_cols=155  Identities=23%  Similarity=0.318  Sum_probs=118.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGY--SSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~--~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      .|..++|+..++.-...+.++|+.|+.|.  .|+.|+-+. ..+|++++|-.+++-+...++.+...++.+.++|+.|+.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            56788999999999999999999776543  345544332 237899999999998888899999889888789999986


Q ss_pred             h-hHHHHHHhCCCCCceeEEEEcCCccccH-HHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHH
Q 023411          181 A-DSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKN  258 (282)
Q Consensus       181 ~-~~l~~l~~~~~~~~fDlV~id~~~~~~~-~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~  258 (282)
                      . +.++.+      ..+|++++|+..+++. ..|+.+. +   =+.|.++|..|.+..+. ..           -.|...
T Consensus       106 ~e~~~~~~------~~iDF~vVDc~~~d~~~~vl~~~~-~---~~~GaVVV~~Na~~r~~-~~-----------~~w~~~  163 (218)
T PF07279_consen  106 PEEVMPGL------KGIDFVVVDCKREDFAARVLRAAK-L---SPRGAVVVCYNAFSRST-NG-----------FSWRSV  163 (218)
T ss_pred             HHHHHhhc------cCCCEEEEeCCchhHHHHHHHHhc-c---CCCceEEEEeccccCCc-CC-----------ccHHHh
Confidence            5 456665      6899999999987776 5555432 2   34566777788765432 11           136666


Q ss_pred             hhhCCCeEEEEeecCCceEEEE
Q 023411          259 LMEDERVSISMVPIGDGMTICQ  280 (282)
Q Consensus       259 ~~~~~~~~~~~lp~~~Gl~~~~  280 (282)
                      ++..+.+.+++||+|.||.+++
T Consensus       164 ~~~~r~Vrsv~LPIG~GleVt~  185 (218)
T PF07279_consen  164 LRGRRVVRSVFLPIGKGLEVTR  185 (218)
T ss_pred             cCCCCceeEEEeccCCCeEEEE
Confidence            7778889999999999999987

The function of this family is unknown.

>PRK06922 hypothetical protein; Provisional

Probab=99.35  E-value=1e-11  Score=119.22  Aligned_cols=113  Identities=13%  Similarity=0.180  Sum_probs=86.1

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       112 ~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      ..+....++.+|||||||+|..+..+++..| +++|+|+|+++.+++.|+++....+  .+++++++|+.+....+.   
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fe---  484 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFE---  484 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccC---
Confidence            3445556788999999999999999998876 7899999999999999998876544  358899999875321121   


Q ss_pred             CCCceeEEEEcCCcc----------------ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          192 EASSYDFAFVDAEKR----------------MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       192 ~~~~fDlV~id~~~~----------------~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                       +++||+|++....+                .....++.+.++   |||||.+++.+..
T Consensus       485 -deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RV---LKPGGrLII~D~v  539 (677)
T PRK06922        485 -KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEV---LKPGGRIIIRDGI  539 (677)
T ss_pred             -CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHH---cCCCcEEEEEeCc
Confidence             57899998754321                234567777777   9999999996653

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.35  E-value=9.3e-12  Score=112.98  Aligned_cols=117  Identities=20%  Similarity=0.277  Sum_probs=95.2

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+.+..+..+..++...++.+|||+|||+|.+++.++..   +.+++|+|+++.+++.++++++.+|+.+ ++++++|+.
T Consensus       165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~  240 (329)
T TIGR01177       165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT  240 (329)
T ss_pred             CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence            567777888888888888899999999999998887653   5799999999999999999999999887 899999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCcc------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~------------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +. +..     .++||+|++|++..            .+..+++.+.++   |+|||.+++-
T Consensus       241 ~l-~~~-----~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~---Lk~gG~lv~~  293 (329)
T TIGR01177       241 KL-PLS-----SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEV---LKSEGWIVYA  293 (329)
T ss_pred             cC-Ccc-----cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHH---ccCCcEEEEE
Confidence            64 211     47899999986521            145667777777   9999998873

This family is found exclusively in the Archaea.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.35  E-value=1.1e-11  Score=112.80  Aligned_cols=111  Identities=17%  Similarity=0.187  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (282)
                      .....++..+. .....+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++.+++.  .+++.+|..+. 
T Consensus       183 ~gt~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-  257 (342)
T PRK09489        183 VGSQLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-  257 (342)
T ss_pred             HHHHHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-
Confidence            33344444343 33456899999999999999999876 679999999999999999999998875  46777776542 


Q ss_pred             HHHHhCCCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          185 KALILNGEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                        .     .++||+|+++.+.+.        ...++..+.+.   |+|||.+++
T Consensus       258 --~-----~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~---LkpgG~L~i  301 (342)
T PRK09489        258 --I-----KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRH---LNSGGELRI  301 (342)
T ss_pred             --c-----CCCccEEEECCCccCCccccHHHHHHHHHHHHHh---cCcCCEEEE
Confidence              2     478999999876332        34566777777   999998866

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.35  E-value=8.5e-12  Score=103.80  Aligned_cols=104  Identities=18%  Similarity=0.255  Sum_probs=80.7

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ++..++.++||+|||.|..++++|+.   +..|+++|.|+..++.+++..+..+++  ++..+.|..+...       .+
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-------~~   93 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-------PE   93 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TT
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-------cC
Confidence            45557789999999999999999985   579999999999999999988888876  8999988765422       47


Q ss_pred             ceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .||+|+....     .+..+..++.+...   ++|||++++...
T Consensus        94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~---~~pGG~~li~~~  134 (192)
T PF03848_consen   94 EYDFIVSTVVFMFLQRELRPQIIENMKAA---TKPGGYNLIVTF  134 (192)
T ss_dssp             TEEEEEEESSGGGS-GGGHHHHHHHHHHT---EEEEEEEEEEEE
T ss_pred             CcCEEEEEEEeccCCHHHHHHHHHHHHhh---cCCcEEEEEEEe
Confidence            8999987533     44566778888888   999999888543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.34  E-value=1.8e-11  Score=112.72  Aligned_cols=95  Identities=20%  Similarity=0.297  Sum_probs=75.4

Q ss_pred             ccCHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      ...++...++..+... .+..+|||+|||+|..++.++...+ +.+++++|+|+++++.|+++++.++.  +++++++|.
T Consensus       233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl  309 (423)
T PRK14966        233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSW  309 (423)
T ss_pred             CCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence            4456667777766543 4567999999999999999998766 68999999999999999999988764  699999998


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      .+.....     .++||+|+++++
T Consensus       310 ~e~~l~~-----~~~FDLIVSNPP  328 (423)
T PRK14966        310 FDTDMPS-----EGKWDIIVSNPP  328 (423)
T ss_pred             hcccccc-----CCCccEEEECCC
Confidence            6531101     357999999875

>PRK14967 putative methyltransferase; Provisional

Probab=99.34  E-value=2.5e-11  Score=104.20  Aligned_cols=99  Identities=18%  Similarity=0.258  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+..+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++..++.  +++++++|+.+.++       .++||
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~-------~~~fD  103 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE-------FRPFD  103 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc-------CCCee
Confidence            45679999999999999998874 3 35999999999999999999988776  48899999865432       47899


Q ss_pred             EEEEcCCccc------------------------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRM------------------------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~------------------------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|+++.+...                        ...+++.+.++   |+|||.+++
T Consensus       104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---Lk~gG~l~~  157 (223)
T PRK14967        104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL---LAPGGSLLL  157 (223)
T ss_pred             EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh---cCCCcEEEE
Confidence            9999854111                        22345556666   999999986

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.34  E-value=1.7e-11  Score=108.19  Aligned_cols=116  Identities=19%  Similarity=0.368  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          104 SPDQAQLLAMLV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       104 ~~~~~~ll~~l~---~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      .++...++..+.   ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++++|.
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~  167 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW  167 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence            444444555444   234677999999999999999999886 6899999999999999999988 44455799999998


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCcc-----------------------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~-----------------------------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+..+       .++||+|+++.+..                             .+..+++.+.++   |+|||.+++.
T Consensus       168 ~~~~~-------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~---Lk~gG~l~~e  237 (275)
T PRK09328        168 FEPLP-------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY---LKPGGWLLLE  237 (275)
T ss_pred             cCcCC-------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh---cccCCEEEEE
Confidence            54321       37899999875421                             123345555566   9999999984

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.33  E-value=2.5e-11  Score=106.00  Aligned_cols=100  Identities=17%  Similarity=0.188  Sum_probs=77.4

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +.+|||+|||+|.+++.++...+ +.+++++|+|+.+++.|++|++.++    ++++++|..+.++...    .++||+|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~----~~~fDlV  157 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL----RGRVDIL  157 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc----CCCEeEE
Confidence            45899999999999999998876 5799999999999999999998765    4789999876543221    3679999


Q ss_pred             EEcCCccc-----------------------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVDAEKRM-----------------------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id~~~~~-----------------------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++|.+.-.                             +..+++.+.++   |+|||.+++.
T Consensus       158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~---L~~gG~l~l~  215 (251)
T TIGR03704       158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDW---LAPGGHLLVE  215 (251)
T ss_pred             EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHh---cCCCCEEEEE
Confidence            99875210                             12344444455   9999999985

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.33  E-value=7.5e-12  Score=107.70  Aligned_cols=102  Identities=20%  Similarity=0.240  Sum_probs=81.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .+.+|||+|||+|.++..+++..+ ..+++++|++++++..+++...     .+++++.+|..+... .     .++||+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~-~-----~~~fD~  101 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL-E-----DSSFDL  101 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC-C-----CCceeE
Confidence            457999999999999999999876 6789999999999988887654     358899999865421 1     478999


Q ss_pred             EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |++....+   +....+..+.++   |+|||.+++.....
T Consensus       102 vi~~~~l~~~~~~~~~l~~~~~~---L~~~G~l~~~~~~~  138 (240)
T TIGR02072       102 IVSNLALQWCDDLSQALSELARV---LKPGGLLAFSTFGP  138 (240)
T ss_pred             EEEhhhhhhccCHHHHHHHHHHH---cCCCcEEEEEeCCc
Confidence            99876633   455677777777   99999999975543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.32  E-value=5e-11  Score=107.55  Aligned_cols=120  Identities=21%  Similarity=0.147  Sum_probs=89.1

Q ss_pred             CCCccCHHHHHHHHHH----HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411           99 SQMQVSPDQAQLLAML----VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (282)
Q Consensus        99 ~~~~~~~~~~~ll~~l----~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (282)
                      +..+.++...+.+...    +...++.+|||+|||+|.+++.+++.   +.+|+++|+++++++.|+++++.+++. +++
T Consensus       149 sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~-~v~  224 (315)
T PRK03522        149 SFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLT-NVQ  224 (315)
T ss_pred             eeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceE
Confidence            3445555554444332    22235689999999999999999983   479999999999999999999999984 699


Q ss_pred             EEEcchhhHHHHHHhCCCCCceeEEEEcCCcccc-HHHHHHHHHhhcCCCCCcEEEEe
Q 023411          175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMY-QEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       175 ~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~-~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++++|+.+.....     .+.||+|++|++.... ....+.+.+    ++|++++.+.
T Consensus       225 ~~~~D~~~~~~~~-----~~~~D~Vv~dPPr~G~~~~~~~~l~~----~~~~~ivyvs  273 (315)
T PRK03522        225 FQALDSTQFATAQ-----GEVPDLVLVNPPRRGIGKELCDYLSQ----MAPRFILYSS  273 (315)
T ss_pred             EEEcCHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHH----cCCCeEEEEE
Confidence            9999998765432     3579999999885543 333344443    6788887774

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=2.3e-11  Score=107.75  Aligned_cols=121  Identities=19%  Similarity=0.372  Sum_probs=90.5

Q ss_pred             CccCHHHHHHHHHHH-hhcC-CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          101 MQVSPDQAQLLAMLV-QILG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~-~~~~-~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ...++++..++..+. .... ..+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|...+++ .++.++++
T Consensus        90 liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~  167 (280)
T COG2890          90 LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQS  167 (280)
T ss_pred             eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEee
Confidence            345666776776643 2211 22799999999999999999987 68999999999999999999999998 56777777


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCc---c-------------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEK---R-------------------------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~---~-------------------------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |..+.+        .++||+|+++++.   .                         .+..+++.+...   |+|||++++
T Consensus       168 dlf~~~--------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~---l~~~g~l~l  236 (280)
T COG2890         168 DLFEPL--------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI---LKPGGVLIL  236 (280)
T ss_pred             eccccc--------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH---cCCCcEEEE
Confidence            665432        4699999987651   1                         133455556666   999999999


Q ss_pred             eCCC
Q 023411          231 DNVL  234 (282)
Q Consensus       231 dd~~  234 (282)
                      .--.
T Consensus       237 e~g~  240 (280)
T COG2890         237 EIGL  240 (280)
T ss_pred             EECC
Confidence            6443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.32  E-value=2.1e-11  Score=107.55  Aligned_cols=109  Identities=23%  Similarity=0.332  Sum_probs=81.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...+++||++-|.+|.++++.+..-  ..+|++||.|..+++++++|+..+|++ ++++++.+|+.+.+..+..   .++
T Consensus       121 ~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---~~~  195 (286)
T PF10672_consen  121 YAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---GGR  195 (286)
T ss_dssp             HCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---TT-
T ss_pred             HcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---CCC
Confidence            3467899999999999999887642  248999999999999999999999986 6899999999998876533   469


Q ss_pred             eeEEEEcCC---------ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAE---------KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~---------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ||+|++|++         ..+|...+..+.++   |+|||+|++-..
T Consensus       196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~l---l~~gG~l~~~sc  239 (286)
T PF10672_consen  196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKL---LKPGGLLLTCSC  239 (286)
T ss_dssp             EEEEEE--SSEESSTCEHHHHHHHHHHHHHHT---EEEEEEEEEEE-
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHh---cCCCCEEEEEcC
Confidence            999999987         22355566666677   999999876433

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.31  E-value=1.5e-11  Score=104.82  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=82.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++..   ...+++++.+|+.+...      ..++|
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~------~~~~~  107 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF------EDNSF  107 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC------CCCcE
Confidence            3467899999999999999999988644799999999999999998875   34568999999876421      14689


Q ss_pred             eEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+|++....   .+....++.+.++   |+|||.+++-+..
T Consensus       108 D~i~~~~~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~~~  145 (223)
T TIGR01934       108 DAVTIAFGLRNVTDIQKALREMYRV---LKPGGRLVILEFS  145 (223)
T ss_pred             EEEEEeeeeCCcccHHHHHHHHHHH---cCCCcEEEEEEec
Confidence            999886543   3455567777777   9999999886553

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.31  E-value=1e-11  Score=108.38  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=78.6

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ......++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++..      ...++++|+.+. +..     
T Consensus        36 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~~~-----  100 (251)
T PRK10258         36 AMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-PLA-----  100 (251)
T ss_pred             HhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-cCC-----
Confidence            3333345679999999999999888763   5799999999999999887643      246788888553 211     


Q ss_pred             CCceeEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          193 ASSYDFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       193 ~~~fDlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +++||+|++...   ..+....+..+.++   |+|||.+++....
T Consensus       101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~---Lk~gG~l~~~~~~  142 (251)
T PRK10258        101 TATFDLAWSNLAVQWCGNLSTALRELYRV---VRPGGVVAFTTLV  142 (251)
T ss_pred             CCcEEEEEECchhhhcCCHHHHHHHHHHH---cCCCeEEEEEeCC
Confidence            468999998754   34556677888888   9999999987543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.30  E-value=2.4e-12  Score=109.88  Aligned_cols=100  Identities=16%  Similarity=0.216  Sum_probs=77.9

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-----cEEEEEcchhhHHHHHHhCCCCC
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      +++|||+|||+|..+..||+.   ++.|+|||+++++++.|++........+     ++++.+.+..+.         .+
T Consensus        90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---------~~  157 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---------TG  157 (282)
T ss_pred             CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---------cc
Confidence            468999999999999999985   5899999999999999999954433333     255555555332         47


Q ss_pred             ceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          195 SYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       195 ~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .||.|++--..+|   ..++++.+.++   |+|||.+++..+-
T Consensus       158 ~fDaVvcsevleHV~dp~~~l~~l~~~---lkP~G~lfittin  197 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDPQEFLNCLSAL---LKPNGRLFITTIN  197 (282)
T ss_pred             ccceeeeHHHHHHHhCHHHHHHHHHHH---hCCCCceEeeehh
Confidence            7999999877555   45567777777   9999999998775

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.29  E-value=2.1e-11  Score=98.45  Aligned_cols=106  Identities=22%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411          107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       107 ~~~ll~~l~~-~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      ...++..+.. ..+..+|||||||+|.++..+++.   +.+++++|+++.+++.           ..+.....+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~   74 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPF   74 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHC
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhc
Confidence            3445555654 567889999999999999999764   3599999999998876           113333322222211


Q ss_pred             HHHhCCCCCceeEEEEcCCccccH---HHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          186 ALILNGEASSYDFAFVDAEKRMYQ---EYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~~~~~---~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                       .     .++||+|++....++..   .+++.+.++   |||||++++.....
T Consensus        75 -~-----~~~fD~i~~~~~l~~~~d~~~~l~~l~~~---LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   75 -P-----DGSFDLIICNDVLEHLPDPEEFLKELSRL---LKPGGYLVISDPNR  118 (161)
T ss_dssp             -H-----SSSEEEEEEESSGGGSSHHHHHHHHHHHC---EEEEEEEEEEEEBT
T ss_pred             -c-----ccchhhHhhHHHHhhcccHHHHHHHHHHh---cCCCCEEEEEEcCC
Confidence             1     68999999988866554   455555555   99999999987764

...

>PTZ00146 fibrillarin; Provisional

Probab=99.29  E-value=4.9e-11  Score=105.05  Aligned_cols=109  Identities=15%  Similarity=0.108  Sum_probs=79.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCCCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEAS  194 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~~~~  194 (282)
                      +.+..+|||+|||+|.++..++..+.+.++|++||+++.+.+...+..+.   ..++.++.+|+.+..  ..+     .+
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da~~p~~y~~~-----~~  201 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDARYPQKYRML-----VP  201 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCccChhhhhcc-----cC
Confidence            46778999999999999999999987678999999998766444443332   135889999986421  111     35


Q ss_pred             ceeEEEEcCCccccH-HHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          195 SYDFAFVDAEKRMYQ-EYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       195 ~fDlV~id~~~~~~~-~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ++|+||+|....+.. .++..+.++   |||||.+++. +.+..
T Consensus       202 ~vDvV~~Dva~pdq~~il~~na~r~---LKpGG~~vI~-ika~~  241 (293)
T PTZ00146        202 MVDVIFADVAQPDQARIVALNAQYF---LKNGGHFIIS-IKANC  241 (293)
T ss_pred             CCCEEEEeCCCcchHHHHHHHHHHh---ccCCCEEEEE-Eeccc
Confidence            899999998744433 344567777   9999999993 44333

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=3.6e-11  Score=105.49  Aligned_cols=115  Identities=20%  Similarity=0.305  Sum_probs=89.9

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .++....-++..+.....+ +|||+|||+|..++.+++..| ..+++-+|+|..+++.++++++.+++++. .++..|..
T Consensus       142 ~lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~  218 (300)
T COG2813         142 KLDKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLY  218 (300)
T ss_pred             CcChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccc
Confidence            3455555555555554444 999999999999999999987 89999999999999999999999998864 67777766


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc----cH----HHHHHHHHhhcCCCCCcEEEE
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM----YQ----EYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~----~~----~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +..        .++||+|+++++.+.    ..    .++....+.   |++||-|-+
T Consensus       219 ~~v--------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~---L~~gGeL~i  264 (300)
T COG2813         219 EPV--------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARH---LKPGGELWI  264 (300)
T ss_pred             ccc--------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHh---hccCCEEEE
Confidence            543        369999999987433    22    566677777   999997744

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.29  E-value=1.2e-11  Score=102.09  Aligned_cols=144  Identities=16%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ..-.++||+|||.|.+|..|+.+.   .+++++|+++.+++.|+++...  .. +|++++++..+..|       .++||
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P-------~~~FD  108 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWP-------EGRFD  108 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT----------SS-EE
T ss_pred             cccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCC-------CCCee
Confidence            344689999999999999999875   4899999999999999998874  33 69999999988655       68999


Q ss_pred             EEEEcCCc------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChh--hHHHHHHHHHhhhCCCeEEEE
Q 023411          198 FAFVDAEK------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAK--TISIRNFNKNLMEDERVSISM  269 (282)
Q Consensus       198 lV~id~~~------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  269 (282)
                      +|++....      .....++..+...   |+|||.||+-..-  .. ....|++.-  ..-+..|++.+.+-+.+++--
T Consensus       109 LIV~SEVlYYL~~~~~L~~~l~~l~~~---L~pgG~LV~g~~r--d~-~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~  182 (201)
T PF05401_consen  109 LIVLSEVLYYLDDAEDLRAALDRLVAA---LAPGGHLVFGHAR--DA-NCRRWGHAAGAETVLEMLQEHLTEVERVECRG  182 (201)
T ss_dssp             EEEEES-GGGSSSHHHHHHHHHHHHHT---EEEEEEEEEEEE---HH-HHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-
T ss_pred             EEEEehHhHcCCCHHHHHHHHHHHHHH---hCCCCEEEEEEec--CC-cccccCcccchHHHHHHHHHHhhheeEEEEcC
Confidence            99987552      2234456666666   9999999995442  10 001122211  112345566665555555544


Q ss_pred             eecCCceEEEE
Q 023411          270 VPIGDGMTICQ  280 (282)
Q Consensus       270 lp~~~Gl~~~~  280 (282)
                      -..+..-+|++
T Consensus       183 ~~~~~~~~~~~  193 (201)
T PF05401_consen  183 GSPNEDCLLAR  193 (201)
T ss_dssp             SSTTSEEEEEE
T ss_pred             CCCCCceEeee
Confidence            44444444443

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.28  E-value=4.1e-11  Score=101.84  Aligned_cols=99  Identities=19%  Similarity=0.251  Sum_probs=72.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~  195 (282)
                      .++.+|||||||+|.++..+++..++.++|++||+++.           .... .++++++|+.+.  ++.+......++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-GVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence            56779999999999999999998866789999999881           1223 489999998763  233222112578


Q ss_pred             eeEEEEcCCccc--------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEKRM--------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~~~--------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+|+++..+..              ....++.+.++   |+|||.+++.
T Consensus       118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~---LkpGG~~vi~  164 (209)
T PRK11188        118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDV---LAPGGSFVVK  164 (209)
T ss_pred             CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHH---cCCCCEEEEE
Confidence            999999764211              12356667777   9999999995

>PLN02823 spermine synthase

Probab=99.28  E-value=3.8e-11  Score=108.61  Aligned_cols=105  Identities=14%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++||.||+|.|..+.++++..+ ..+++.||++++.++.+++++...+   .+++++++.+|+.+.+...     .+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-----~~  175 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-----DE  175 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----CC
Confidence            4678999999999999999888643 4689999999999999999986432   2468999999999887643     57


Q ss_pred             ceeEEEEcCCcc---------ccHHHHH-HHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKR---------MYQEYFE-LLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~---------~~~~~l~-~~~~~~~~LkpgG~lv~d  231 (282)
                      +||+||+|....         ...++++ .+.+.   |+|||++++.
T Consensus       176 ~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~---L~p~Gvlv~q  219 (336)
T PLN02823        176 KFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPK---LNPGGIFVTQ  219 (336)
T ss_pred             CccEEEecCCCccccCcchhhccHHHHHHHHHHh---cCCCcEEEEe
Confidence            899999995421         1345777 78888   9999999885

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.28  E-value=7.3e-11  Score=101.78  Aligned_cols=116  Identities=16%  Similarity=0.221  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (282)
                      +....++.......++.+|||||||+|.++..+++.   +.+++++|+++.+++.+++++...+.  .++++.++..+..
T Consensus        34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~  108 (233)
T PRK05134         34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA  108 (233)
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence            333445555555567889999999999999988874   46899999999999999999887665  4788888886654


Q ss_pred             HHHHhCCCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          185 KALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...     .++||+|++....   .+....++.+.++   |+|||.+++...
T Consensus       109 ~~~-----~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~---L~~gG~l~v~~~  152 (233)
T PRK05134        109 AEH-----PGQFDVVTCMEMLEHVPDPASFVRACAKL---VKPGGLVFFSTL  152 (233)
T ss_pred             hhc-----CCCccEEEEhhHhhccCCHHHHHHHHHHH---cCCCcEEEEEec
Confidence            322     4799999986542   2345567778787   999999998754

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.27  E-value=1.8e-10  Score=94.76  Aligned_cols=130  Identities=18%  Similarity=0.243  Sum_probs=100.0

Q ss_pred             CCccCHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          100 QMQVSPDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~-~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      +|..+.....+...+.. ...+.++||+-+|+|..++..+++-.  .+++.||.+.......++|++..+...+++++..
T Consensus        23 RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~  100 (187)
T COG0742          23 RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRN  100 (187)
T ss_pred             CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence            45556666666667766 47889999999999999999888642  6899999999999999999999998888999999


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCccc-cHH-HHHHHH-HhhcCCCCCcEEEEeCCC
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKRM-YQE-YFELLL-QLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~~-~~~-~l~~~~-~~~~~LkpgG~lv~dd~~  234 (282)
                      |+...++.+..   .+.||+||+|++... ..+ ....+. ...+||+|+|.++++.-.
T Consensus       101 da~~~L~~~~~---~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         101 DALRALKQLGT---REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             cHHHHHHhcCC---CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            99876666521   235999999999652 221 222222 126889999999997543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.27  E-value=1.8e-11  Score=110.67  Aligned_cols=100  Identities=18%  Similarity=0.185  Sum_probs=78.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..+..+++..+ +.+|+++|+++++++.++++...    .+++++++|+.+. +.     ..++||+
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~-----~~~sFDv  181 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PF-----PTDYADR  181 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CC-----CCCceeE
Confidence            567999999999999999998875 57999999999999999987642    3588999998653 11     1478999


Q ss_pred             EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |++....+   +....++++.++   |+|||.+++-+
T Consensus       182 VIs~~~L~~~~d~~~~L~e~~rv---LkPGG~LvIi~  215 (340)
T PLN02490        182 YVSAGSIEYWPDPQRGIKEAYRV---LKIGGKACLIG  215 (340)
T ss_pred             EEEcChhhhCCCHHHHHHHHHHh---cCCCcEEEEEE
Confidence            99876532   345567778787   99999987743

>TIGR03438 probable methyltransferase

Probab=99.27  E-value=1e-10  Score=104.81  Aligned_cols=109  Identities=14%  Similarity=0.053  Sum_probs=78.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|..+..+++.++++.+|+++|+|++|++.+++++......-++.++++|+.+..+... ........+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~-~~~~~~~~~  141 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP-EPAAGRRLG  141 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc-ccccCCeEE
Confidence            5579999999999999999998864579999999999999999988764433357889999876433221 100113334


Q ss_pred             EEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++++..     ......+++.+.+.   |+|||.++++
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~---L~pgG~~lig  176 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQL---LGPGGGLLIG  176 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHh---cCCCCEEEEe
Confidence            555443     22344567777777   9999999875

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.26  E-value=2.7e-11  Score=102.93  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=85.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCC-----CCEEEEEecCccHHHHHHHHHHHhCCCCc--EEEEEcchhhHHHHHHh
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLKALIL  189 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~-----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~--v~~~~gd~~~~l~~l~~  189 (282)
                      ..+..++||++||||..+..+.++.+.     +++|+.+|++|+|+..++++.++.++...  +.++++|+.+. |.   
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-pF---  173 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-PF---  173 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-CC---
Confidence            345679999999999999999999863     27999999999999999999988888655  99999999654 32   


Q ss_pred             CCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          190 NGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                        ++++||...+....+   +....++++.++   |||||.+.+
T Consensus       174 --dd~s~D~yTiafGIRN~th~~k~l~EAYRV---LKpGGrf~c  212 (296)
T KOG1540|consen  174 --DDDSFDAYTIAFGIRNVTHIQKALREAYRV---LKPGGRFSC  212 (296)
T ss_pred             --CCCcceeEEEecceecCCCHHHHHHHHHHh---cCCCcEEEE
Confidence              268999988876644   455566777676   999998875

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.26  E-value=4.4e-11  Score=101.83  Aligned_cols=101  Identities=17%  Similarity=0.092  Sum_probs=74.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--------------CCcEEEEEcchhhHH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------SHKVKIKHGLAADSL  184 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------------~~~v~~~~gd~~~~l  184 (282)
                      ++.+|||+|||.|..++++|+.   +.+|+|+|+|+.+++.+.+   ++++              ..+++++++|..+..
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            5579999999999999999974   5799999999999987533   2222              235899999998753


Q ss_pred             HHHHhCCCCCceeEEEEcC-----CccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          185 KALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id~-----~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...     .+.||.|+-..     .......+++.+.++   |+|||++++...
T Consensus       108 ~~~-----~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~l---LkpgG~~ll~~~  153 (213)
T TIGR03840       108 AAD-----LGPVDAVYDRAALIALPEEMRQRYAAHLLAL---LPPGARQLLITL  153 (213)
T ss_pred             ccc-----CCCcCEEEechhhccCCHHHHHHHHHHHHHH---cCCCCeEEEEEE
Confidence            321     25688876432     234456688888888   999997666544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.25  E-value=1.5e-10  Score=109.27  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=92.1

Q ss_pred             CCccCHHHHHHHHH-HH---hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEE
Q 023411          100 QMQVSPDQAQLLAM-LV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (282)
Q Consensus       100 ~~~~~~~~~~ll~~-l~---~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (282)
                      ..++++...+.+.. +.   ...++.+|||+|||+|.+++.+++..   .+|+++|+|+++++.|+++++.+++. ++++
T Consensus       274 F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~  349 (443)
T PRK13168        274 FIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTF  349 (443)
T ss_pred             eEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEE
Confidence            34566665444333 22   33466899999999999999999864   68999999999999999999998886 4999


Q ss_pred             EEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       176 ~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +++|+.+.+.....  ..++||+|++|.+.......++.+.+    ++|++++.+.
T Consensus       350 ~~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~----~~~~~ivyvS  399 (443)
T PRK13168        350 YHANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK----LGPKRIVYVS  399 (443)
T ss_pred             EEeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh----cCCCeEEEEE
Confidence            99999775432110  03579999999986665566665555    5899998885

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.25  E-value=9.3e-11  Score=100.32  Aligned_cols=102  Identities=21%  Similarity=0.311  Sum_probs=87.5

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      ..+||||||.|.+...+|...| +..++|||+....+..+.+.+.+.++. ++.++++|+.+.+..+.+.   ++.|-|+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~---~sl~~I~  124 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPD---GSLDKIY  124 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCC---CCeeEEE
Confidence            4899999999999999999988 679999999999999999999999997 5999999999998888642   3666665


Q ss_pred             E---cCCcc--c------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          201 V---DAEKR--M------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       201 i---d~~~~--~------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +   |+|+.  +      ...+++.+.+.   |+|||.|-+
T Consensus       125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~---Lk~gG~l~~  162 (227)
T COG0220         125 INFPDPWPKKRHHKRRLTQPEFLKLYARK---LKPGGVLHF  162 (227)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHH---ccCCCEEEE
Confidence            5   66622  2      57789999999   999999977

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.25  E-value=4e-11  Score=105.16  Aligned_cols=117  Identities=17%  Similarity=0.190  Sum_probs=80.3

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .......+++|||||||.||.+..|+..-+  ..|+|||.++......+..-+-.|....+.++. ...+.++.      
T Consensus       109 p~l~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~------  179 (315)
T PF08003_consen  109 PHLPDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPN------  179 (315)
T ss_pred             hhhCCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccc------
Confidence            333456789999999999999999998643  579999999887766554444444443333332 23333333      


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      .+.||+||+-++.-|..+.+..+..+...|+|||.||++....+|.
T Consensus       180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence            3789999998884444444444444444499999999998887775

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.25  E-value=2.1e-10  Score=105.77  Aligned_cols=121  Identities=17%  Similarity=0.109  Sum_probs=93.5

Q ss_pred             CCCCccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE
Q 023411           98 GSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (282)
                      .+..++++...+.+...+.    ..++.+|||+|||+|.+++.++..   +.+|+++|+++.+++.|+++++.+++. ++
T Consensus       208 ~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~  283 (374)
T TIGR02085       208 QSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NL  283 (374)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cE
Confidence            4456777777666654332    235679999999999999999963   468999999999999999999999886 69


Q ss_pred             EEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       174 ~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +++++|+.+.+...     ..+||+||+|++... ....++.+..    ++|++++.+.
T Consensus       284 ~~~~~d~~~~~~~~-----~~~~D~vi~DPPr~G~~~~~l~~l~~----~~p~~ivyvs  333 (374)
T TIGR02085       284 SFAALDSAKFATAQ-----MSAPELVLVNPPRRGIGKELCDYLSQ----MAPKFILYSS  333 (374)
T ss_pred             EEEECCHHHHHHhc-----CCCCCEEEECCCCCCCcHHHHHHHHh----cCCCeEEEEE
Confidence            99999997765432     356999999988554 3445565654    6899988885

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03612 spermidine synthase; Provisional

Probab=99.24  E-value=5e-11  Score=114.32  Aligned_cols=107  Identities=19%  Similarity=0.292  Sum_probs=84.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHH--HHHh---CC-CCcEEEEEcchhhHHHHHHhC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERA---GV-SHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~---g~-~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      ..++++|||||||+|..+..++++ +...+++++|+|+++++.++++  +...   .. +++++++.+|+.+.+...   
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---  370 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---  370 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence            356789999999999999999875 4237999999999999999994  3321   12 358999999998876654   


Q ss_pred             CCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          191 GEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                        .++||+|++|.....        ..++++.+.+.   |+|||+++++.
T Consensus       371 --~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~---L~pgG~lv~~~  415 (521)
T PRK03612        371 --AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRR---LAPDGLLVVQS  415 (521)
T ss_pred             --CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHh---cCCCeEEEEec
Confidence              579999999965321        23578888888   99999999864

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.23  E-value=1e-10  Score=96.06  Aligned_cols=115  Identities=11%  Similarity=0.039  Sum_probs=87.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|..+..+++.   .++++++|+++.+++.+++++..   .++++++++|+.+....      ...
T Consensus        10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~------~~~   77 (169)
T smart00650       10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP------KLQ   77 (169)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc------ccC
Confidence            3456679999999999999999986   37999999999999999988854   34699999999875321      346


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCc
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQM  243 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~  243 (282)
                      ||.||.+.+.......+..+... ..+.++|+++++.-.....++.|.
T Consensus        78 ~d~vi~n~Py~~~~~~i~~~l~~-~~~~~~~~l~~q~e~a~rl~~~~~  124 (169)
T smart00650       78 PYKVVGNLPYNISTPILFKLLEE-PPAFRDAVLMVQKEVARRLAAKPG  124 (169)
T ss_pred             CCEEEECCCcccHHHHHHHHHhc-CCCcceEEEEEEHHHhHHhcCCCC
Confidence            99999988766555555555542 225588999998776666666554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.23  E-value=1.4e-10  Score=101.96  Aligned_cols=106  Identities=16%  Similarity=0.234  Sum_probs=76.1

Q ss_pred             CCCEEEEEcccccH----HHHHHHHHCCC----CCEEEEEecCccHHHHHHHHHH----HhC------------------
Q 023411          119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYE----RAG------------------  168 (282)
Q Consensus       119 ~~~~VLEIG~G~G~----~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~----~~g------------------  168 (282)
                      ++.+|+|+|||+|.    .+..+++..+.    +.+|+|+|+|+++++.|++.+-    ..+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45699999999996    45555665442    4689999999999999988531    001                  


Q ss_pred             ----CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          169 ----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       169 ----~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                          +.++|+|.++|..+..+.      .++||+|++-....     .....++.+.+.   |+|||+|++...
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~---L~pGG~L~lg~~  243 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPP------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEA---LKPGGYLFLGHS  243 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCc------cCCCCEEEechhHHhCCHHHHHHHHHHHHHH---hCCCeEEEEECc
Confidence                224689999998764321      47899999976532     234567777777   999999999543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.23  E-value=1.1e-10  Score=100.19  Aligned_cols=126  Identities=17%  Similarity=0.284  Sum_probs=96.1

Q ss_pred             CCccCHHHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE
Q 023411          100 QMQVSPDQAQLLAMLVQI------LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~------~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (282)
                      ..+..+++.+++......      .++..++|+|||+|.+++.++..++ .+++++||.|+.++..|.+|.+.+++.+++
T Consensus       123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i  201 (328)
T KOG2904|consen  123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRI  201 (328)
T ss_pred             eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence            345678888888777643      3566899999999999999999998 899999999999999999999999999999


Q ss_pred             EEEEc----chhhHHHHHHhCCCCCceeEEEEcCCc--------------------------cc---cHHHHHHHHHhhc
Q 023411          174 KIKHG----LAADSLKALILNGEASSYDFAFVDAEK--------------------------RM---YQEYFELLLQLLL  220 (282)
Q Consensus       174 ~~~~g----d~~~~l~~l~~~~~~~~fDlV~id~~~--------------------------~~---~~~~l~~~~~~~~  220 (282)
                      .+++-    |..+..+.+     .+++|+++++.+.                          +.   +..++..+.++  
T Consensus       202 ~v~~~~me~d~~~~~~l~-----~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~--  274 (328)
T KOG2904|consen  202 EVIHNIMESDASDEHPLL-----EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRM--  274 (328)
T ss_pred             EEEecccccccccccccc-----cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhh--
Confidence            98854    444333322     5899999876541                          11   22233444455  


Q ss_pred             CCCCCcEEEEeCCC
Q 023411          221 QIRVGGIIVIDNVL  234 (282)
Q Consensus       221 ~LkpgG~lv~dd~~  234 (282)
                       |+|||.+.++-+.
T Consensus       275 -Lq~gg~~~le~~~  287 (328)
T KOG2904|consen  275 -LQPGGFEQLELVE  287 (328)
T ss_pred             -cccCCeEEEEecc
Confidence             9999999997553

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.22  E-value=1.4e-10  Score=97.34  Aligned_cols=101  Identities=22%  Similarity=0.345  Sum_probs=83.4

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      .+||||||.|.+.+.+|...| +..++|+|+....+..+.+.+...++.+ +.++++|+...+..+.+   ++++|.|++
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~---~~~v~~i~i   94 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFP---PGSVDRIYI   94 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHST---TTSEEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhccc---CCchheEEE
Confidence            899999999999999999987 7999999999999999999999999875 99999999988877653   478999887


Q ss_pred             c---CCcc--------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          202 D---AEKR--------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       202 d---~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .   +++.        ....+++.+.++   |+|||.|.+
T Consensus        95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~---L~~gG~l~~  131 (195)
T PF02390_consen   95 NFPDPWPKKRHHKRRLVNPEFLELLARV---LKPGGELYF  131 (195)
T ss_dssp             ES-----SGGGGGGSTTSHHHHHHHHHH---EEEEEEEEE
T ss_pred             eCCCCCcccchhhhhcCCchHHHHHHHH---cCCCCEEEE
Confidence            4   4421        257789999999   999999866

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.21  E-value=3.6e-10  Score=106.28  Aligned_cols=122  Identities=18%  Similarity=0.225  Sum_probs=91.5

Q ss_pred             CCccCHHHHHHHHH-H---HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEE
Q 023411          100 QMQVSPDQAQLLAM-L---VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (282)
Q Consensus       100 ~~~~~~~~~~ll~~-l---~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (282)
                      ..+.++.....+.. +   +...++.+|||+|||+|.+++.+++..   .+|+++|+++++++.|+++++.+++. ++++
T Consensus       269 F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~  344 (431)
T TIGR00479       269 FFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEF  344 (431)
T ss_pred             eeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEE
Confidence            34455554443332 2   233466899999999999999999863   58999999999999999999999875 5999


Q ss_pred             EEcchhhHHHHHHhCCCCCceeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       176 ~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +++|+.+.++.....  .++||+|++|.+... ....++.+.+    ++|++++++.
T Consensus       345 ~~~d~~~~l~~~~~~--~~~~D~vi~dPPr~G~~~~~l~~l~~----l~~~~ivyvs  395 (431)
T TIGR00479       345 LAGTLETVLPKQPWA--GQIPDVLLLDPPRKGCAAEVLRTIIE----LKPERIVYVS  395 (431)
T ss_pred             EeCCHHHHHHHHHhc--CCCCCEEEECcCCCCCCHHHHHHHHh----cCCCEEEEEc
Confidence            999998766543211  357999999998544 5666666654    6899988774

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.21  E-value=2.2e-10  Score=97.92  Aligned_cols=100  Identities=15%  Similarity=0.162  Sum_probs=77.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|..+..++..   +.+|+|+|+++++++.|++++...+..+++++.++|+.+.         .++|
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~f  120 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEF  120 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCc
Confidence            346789999999999999999874   4699999999999999999998877766799999998643         3689


Q ss_pred             eEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+|++....     ......+..+.++   +++++++.+.
T Consensus       121 D~ii~~~~l~~~~~~~~~~~l~~i~~~---~~~~~~i~~~  157 (219)
T TIGR02021       121 DIVVCMDVLIHYPASDMAKALGHLASL---TKERVIFTFA  157 (219)
T ss_pred             CEEEEhhHHHhCCHHHHHHHHHHHHHH---hCCCEEEEEC
Confidence            999874332     2233455666665   8877777664

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.21  E-value=1.2e-10  Score=102.87  Aligned_cols=94  Identities=22%  Similarity=0.225  Sum_probs=72.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCC--CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      +..+|||+|||+|+.+..++..++..  ..++|+|+|+.+++.|+++.      .++++..+|+.+. +..     +++|
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p~~-----~~sf  152 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-PFA-----DQSL  152 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-CCc-----CCce
Confidence            45789999999999999999877532  47999999999999987653      2488899988653 211     5799


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+|+....+.    .++++.++   |+|||++++-
T Consensus       153 D~I~~~~~~~----~~~e~~rv---LkpgG~li~~  180 (272)
T PRK11088        153 DAIIRIYAPC----KAEELARV---VKPGGIVITV  180 (272)
T ss_pred             eEEEEecCCC----CHHHHHhh---ccCCCEEEEE
Confidence            9999754432    34667777   9999999874

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.21  E-value=2.2e-10  Score=95.72  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=73.5

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN  190 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~  190 (282)
                      .+....++.+|||+|||+|..+..++....+.++|+++|+++.+           .. .+++++++|..+.  ...+...
T Consensus        26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~   93 (188)
T TIGR00438        26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRER   93 (188)
T ss_pred             HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHH
Confidence            34445678899999999999999999887546799999999864           12 2478888887542  1222111


Q ss_pred             CCCCceeEEEEcCCcc--------c------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKR--------M------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~--------~------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ...++||+|+++...+        +      ....++.+.++   |+|||.+++.
T Consensus        94 ~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~lvi~  145 (188)
T TIGR00438        94 VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEV---LKPKGNFVVK  145 (188)
T ss_pred             hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHH---ccCCCEEEEE
Confidence            1146899999975311        1      13566777777   9999999995

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.20  E-value=1e-10  Score=111.35  Aligned_cols=113  Identities=17%  Similarity=0.207  Sum_probs=81.9

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +...+...++.+|||||||+|..+..+++..   .+|+++|+++++++.+++.   .+...+++++++|+.+....+   
T Consensus        29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~---   99 (475)
T PLN02336         29 ILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNI---   99 (475)
T ss_pred             HHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCC---
Confidence            3334444456799999999999999999863   5899999999999876553   233456899999985321111   


Q ss_pred             CCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          191 GEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                       ..++||+|++.....+     ...+++.+.++   |+|||++++.+..+.
T Consensus       100 -~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~---Lk~gG~l~~~d~~~~  146 (475)
T PLN02336        100 -SDGSVDLIFSNWLLMYLSDKEVENLAERMVKW---LKVGGYIFFRESCFH  146 (475)
T ss_pred             -CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHh---cCCCeEEEEEeccCC
Confidence             1478999998765332     34567777777   999999999776544

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.19  E-value=3.5e-10  Score=96.78  Aligned_cols=103  Identities=20%  Similarity=0.245  Sum_probs=81.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .+.+|||+|||+|.++..+++.   ..+++++|+++.+++.+++++...+.. ++++..+|+.+.....     .++||+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~  115 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG-----AKSFDV  115 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC-----CCCccE
Confidence            4679999999999999988874   357999999999999999998876653 4889988887654321     378999


Q ss_pred             EEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |++...   ..+....++.+.++   |+|||.+++...
T Consensus       116 i~~~~~l~~~~~~~~~l~~~~~~---L~~gG~l~i~~~  150 (224)
T TIGR01983       116 VTCMEVLEHVPDPQAFIRACAQL---LKPGGILFFSTI  150 (224)
T ss_pred             EEehhHHHhCCCHHHHHHHHHHh---cCCCcEEEEEec
Confidence            998754   33455677788787   999999988654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.19  E-value=9e-10  Score=97.19  Aligned_cols=104  Identities=21%  Similarity=0.332  Sum_probs=89.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .+++||-||-|.|..+..++++.+ -.+++.||+++..++.+++.+....  . +.|++++.+|+.+++...     ..+
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~~  149 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EEK  149 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CCc
Confidence            347999999999999999999865 5799999999999999999988643  2 479999999999988876     468


Q ss_pred             eeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+|++|....       ....+++.|.+.   |+++|+++..
T Consensus       150 fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~---L~~~Gi~v~q  189 (282)
T COG0421         150 FDVIIVDSTDPVGPAEALFTEEFYEGCRRA---LKEDGIFVAQ  189 (282)
T ss_pred             CCEEEEcCCCCCCcccccCCHHHHHHHHHh---cCCCcEEEEe
Confidence            99999997633       247799999999   9999999997

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.19  E-value=1e-10  Score=96.47  Aligned_cols=102  Identities=20%  Similarity=0.198  Sum_probs=77.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE-EEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~-~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .....|||+|||+|..-.+.- . .+..+||++|.++.|-+.+.+.+.++...+ +. |+.++..+ +++++    +++|
T Consensus        75 ~~K~~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~-l~~l~----d~s~  146 (252)
T KOG4300|consen   75 SGKGDVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGEN-LPQLA----DGSY  146 (252)
T ss_pred             cCccceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhc-Ccccc----cCCe
Confidence            344578999999998643222 1 147899999999999999999998875554 65 99998854 45553    6899


Q ss_pred             eEEEEc---CCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVD---AEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id---~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |.|++-   +..++....++++.++   |||||++++
T Consensus       147 DtVV~TlvLCSve~~~k~L~e~~rl---LRpgG~iif  180 (252)
T KOG4300|consen  147 DTVVCTLVLCSVEDPVKQLNEVRRL---LRPGGRIIF  180 (252)
T ss_pred             eeEEEEEEEeccCCHHHHHHHHHHh---cCCCcEEEE
Confidence            999764   4456666778888888   999998877

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.19  E-value=5.9e-10  Score=95.27  Aligned_cols=99  Identities=15%  Similarity=0.092  Sum_probs=74.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--------------CCcEEEEEcchhhH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------SHKVKIKHGLAADS  183 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------------~~~v~~~~gd~~~~  183 (282)
                      .++.+|||+|||.|..++++|+.   +.+|+|||+++.+++.+.+   +.++              ..+|++.++|+.+.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCC
Confidence            35579999999999999999974   6799999999999987632   2222              24689999999875


Q ss_pred             HHHHHhCCCCCceeEEEE-----cCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          184 LKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~i-----d~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .+..     .+.||+|+-     .-.++....+++.+.++   |+|||++++
T Consensus       110 ~~~~-----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~l---L~pgG~~~l  153 (218)
T PRK13255        110 TAAD-----LADVDAVYDRAALIALPEEMRERYVQQLAAL---LPAGCRGLL  153 (218)
T ss_pred             Cccc-----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHH---cCCCCeEEE
Confidence            3321     368899883     23345567789999998   999986443

>PRK06202 hypothetical protein; Provisional

Probab=99.19  E-value=1.4e-10  Score=100.14  Aligned_cols=111  Identities=13%  Similarity=0.132  Sum_probs=76.1

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCC---CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      +.......++.+|||+|||+|..+..+++..+   ++.+|+++|+++++++.|+++....    ++++..++..+. +..
T Consensus        52 ~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~~~  126 (232)
T PRK06202         52 LRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-VAE  126 (232)
T ss_pred             HHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-ccc
Confidence            33333445678999999999999999887542   2459999999999999998876533    255555554322 211


Q ss_pred             HhCCCCCceeEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          188 ILNGEASSYDFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                           +++||+|++....++.     ...++.+.++   ++  |.+++.+...+
T Consensus       127 -----~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~---~~--~~~~i~dl~~~  170 (232)
T PRK06202        127 -----GERFDVVTSNHFLHHLDDAEVVRLLADSAAL---AR--RLVLHNDLIRS  170 (232)
T ss_pred             -----CCCccEEEECCeeecCChHHHHHHHHHHHHh---cC--eeEEEeccccC
Confidence                 5799999987664433     3466666666   76  66677766544

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.18  E-value=4.6e-10  Score=96.37  Aligned_cols=98  Identities=19%  Similarity=0.202  Sum_probs=73.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.|++++...+..+++++..+|..    ..     .++||
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~-----~~~fD  129 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SL-----LGRFD  129 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hc-----cCCcC
Confidence            46779999999999999999875   35799999999999999999988887677999999842    11     47899


Q ss_pred             EEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|++.....+     ....++.+.++   +++++++.+
T Consensus       130 ~v~~~~~l~~~~~~~~~~~l~~l~~~---~~~~~~i~~  164 (230)
T PRK07580        130 TVVCLDVLIHYPQEDAARMLAHLASL---TRGSLIFTF  164 (230)
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHhh---cCCeEEEEE
Confidence            9998655322     23344445444   654444443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.17  E-value=4.1e-10  Score=82.76  Aligned_cols=99  Identities=22%  Similarity=0.344  Sum_probs=76.8

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      +|+|+|||.|..+..++. . ...+++++|++++....+++..... ...+++++.+|..+.....     .++||+|++
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~d~i~~   72 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEA-----DESFDVIIS   72 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcccc-----CCceEEEEE
Confidence            489999999999999987 2 3679999999999999888644333 3346899999987754311     478999999


Q ss_pred             cCCccc----cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          202 DAEKRM----YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       202 d~~~~~----~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +.....    ....++.+.+.   ++|||.+++.
T Consensus        73 ~~~~~~~~~~~~~~l~~~~~~---l~~~g~~~~~  103 (107)
T cd02440          73 DPPLHHLVEDLARFLEEARRL---LKPGGVLVLT  103 (107)
T ss_pred             ccceeehhhHHHHHHHHHHHH---cCCCCEEEEE
Confidence            877443    45567777777   9999999885

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.16  E-value=3.6e-10  Score=91.59  Aligned_cols=108  Identities=20%  Similarity=0.323  Sum_probs=84.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +.+|||+|||.|.....+++.- -.+.++|+|.|+.+++.|+...+..+.++.|+|.+.|+.+. ...     .++||+|
T Consensus        68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~-----~~qfdlv  140 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL-----SGQFDLV  140 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc-----ccceeEE
Confidence            4499999999999999998753 13669999999999999999999999999999999998763 122     5778887


Q ss_pred             EE---------c--CCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          200 FV---------D--AEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       200 ~i---------d--~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      .-         .  .......-|+..+.++   |+|||++++...-|.-
T Consensus       141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~l---l~~~gifvItSCN~T~  186 (227)
T KOG1271|consen  141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKL---LSPGGIFVITSCNFTK  186 (227)
T ss_pred             eecCceeeeecCCCCcccceeeehhhHhhc---cCCCcEEEEEecCccH
Confidence            52         1  1123345578888888   9999999998775543

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.14  E-value=1.5e-09  Score=102.25  Aligned_cols=126  Identities=22%  Similarity=0.282  Sum_probs=98.1

Q ss_pred             CccCHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          101 MQVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~--~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ..+......+...++  ...++.+|||+++|.|+-|..++..+...+.++++|+++..+...++++++.|+.+ +.+...
T Consensus        93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~  171 (470)
T PRK11933         93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHF  171 (470)
T ss_pred             EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeC
Confidence            344555555555555  56788999999999999999999999767899999999999999999999999975 888888


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+.......     .+.||.|++|++...                         ....++.+.++   |||||+||..-.
T Consensus       172 D~~~~~~~~-----~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~---LkpGG~LVYSTC  243 (470)
T PRK11933        172 DGRVFGAAL-----PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHA---LKPGGTLVYSTC  243 (470)
T ss_pred             chhhhhhhc-----hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHH---cCCCcEEEEECC
Confidence            887543333     468999999976220                         13345555566   999999988766


Q ss_pred             CC
Q 023411          234 LW  235 (282)
Q Consensus       234 ~~  235 (282)
                      -+
T Consensus       244 T~  245 (470)
T PRK11933        244 TL  245 (470)
T ss_pred             CC
Confidence            43

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.13  E-value=2.9e-10  Score=95.04  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=89.5

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHH---CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      .-.|.....+..++...+|+.|+|+|...|++++++|+.   +...++|++||++.....  ++.++...+.++|++++|
T Consensus        15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~G   92 (206)
T PF04989_consen   15 IQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQG   92 (206)
T ss_dssp             SS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES
T ss_pred             hcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEEC
Confidence            335666667778888889999999999999999998764   334689999999654332  233344456689999999


Q ss_pred             chhhHH--HHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccC----CcC--CChh
Q 023411          179 LAADSL--KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD----QMV--NDAK  248 (282)
Q Consensus       179 d~~~~l--~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~----~~~--~~~~  248 (282)
                      |..+..  .............+|+.|+.  ..+....++...++   +++|+++|+.|..+......    +.+  +...
T Consensus        93 ds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~pl---v~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p  169 (206)
T PF04989_consen   93 DSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPL---VSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNP  169 (206)
T ss_dssp             -SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT-----TT-EEEETSHHHHHHHHS-------------
T ss_pred             CCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCcc---CCCCCEEEEEeccccccccccccccchhhhhHH
Confidence            987632  22111111245568888876  45667778888888   99999999998864443222    223  2345


Q ss_pred             hHHHHHHHHHhhhCCCeEE
Q 023411          249 TISIRNFNKNLMEDERVSI  267 (282)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~  267 (282)
                      ..++++|+   .+.++|++
T Consensus       170 ~~av~~fL---~~~~~f~i  185 (206)
T PF04989_consen  170 KTAVKEFL---AEHPDFEI  185 (206)
T ss_dssp             HHHHHHHH---HTTTTEEE
T ss_pred             HHHHHHHH---HHCCCcEe
Confidence            67888887   45666554

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.12  E-value=1.8e-09  Score=99.15  Aligned_cols=125  Identities=19%  Similarity=0.126  Sum_probs=90.7

Q ss_pred             CCCCccCHHHHHHHHHHHh-hc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411           98 GSQMQVSPDQAQLLAMLVQ-IL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~-~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (282)
                      .++.++++...+.+...+. ..  .+.+|||++||+|.+++.+++..   .+|++||+++.+++.+++|++.+++. +++
T Consensus       182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~  257 (362)
T PRK05031        182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQ  257 (362)
T ss_pred             CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEE
Confidence            4456677766665555443 22  23579999999999999998864   48999999999999999999999986 699


Q ss_pred             EEEcchhhHHHHHHhCCC----------CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          175 IKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       175 ~~~gd~~~~l~~l~~~~~----------~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++.+|+.+.++.+.....          ..+||+||+|++.....  -+.+..+   .++++++++.
T Consensus       258 ~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~--~~~l~~l---~~~~~ivyvS  319 (362)
T PRK05031        258 IIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLD--DETLKLV---QAYERILYIS  319 (362)
T ss_pred             EEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCc--HHHHHHH---HccCCEEEEE
Confidence            999999887765432110          12589999999954322  2233444   5577877774

>PLN02672 methionine S-methyltransferase

Probab=99.11  E-value=1.2e-09  Score=111.17  Aligned_cols=97  Identities=13%  Similarity=0.003  Sum_probs=73.0

Q ss_pred             ccCHHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--------
Q 023411          102 QVSPDQAQLLAMLVQIL----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------  169 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~----~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------  169 (282)
                      ...++...++..+....    ++.+|||+|||+|.+++.++...+ .++|+++|+|+++++.|++|++.+++        
T Consensus        97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             cCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            34455555555532211    246899999999999999999876 57999999999999999999998653        


Q ss_pred             -------CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411          170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       170 -------~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                             .++++++++|..+.....     ..+||+|+.+.+
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~~~~-----~~~fDlIVSNPP  212 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYCRDN-----NIELDRIVGCIP  212 (1082)
T ss_pred             ccccccccccEEEEECchhhhcccc-----CCceEEEEECCC
Confidence                   257999999997654321     237999998654

>PRK05785 hypothetical protein; Provisional

Probab=99.11  E-value=3.2e-10  Score=97.56  Aligned_cols=88  Identities=13%  Similarity=0.047  Sum_probs=67.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|..+..+++..  +++|+|+|+|++|++.|++.         ..++++|+.+. +..     +++||+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p~~-----d~sfD~  113 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-PFR-----DKSFDV  113 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-CCC-----CCCEEE
Confidence            46799999999999999999875  47999999999999998763         13567787543 221     689999


Q ss_pred             EEEcCCcc---ccHHHHHHHHHhhcCCCCCc
Q 023411          199 AFVDAEKR---MYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG  226 (282)
                      |++....+   +....++++.++   |||..
T Consensus       114 v~~~~~l~~~~d~~~~l~e~~Rv---Lkp~~  141 (226)
T PRK05785        114 VMSSFALHASDNIEKVIAEFTRV---SRKQV  141 (226)
T ss_pred             EEecChhhccCCHHHHHHHHHHH---hcCce
Confidence            99876533   445567777777   99953

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.10  E-value=4.4e-10  Score=94.43  Aligned_cols=149  Identities=17%  Similarity=0.188  Sum_probs=103.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCC-CCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~-~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....+.+|||.++|-||.++..+++   ++ +|++||.+|..++.|+-|-=..++ +..++++.||+.+..+.+.    +
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~----D  203 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD----D  203 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC----c
Confidence            3456889999999999999988875   55 999999999999887654221222 1248999999999888773    6


Q ss_pred             CceeEEEEcCCc-----c-ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEE
Q 023411          194 SSYDFAFVDAEK-----R-MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI  267 (282)
Q Consensus       194 ~~fDlV~id~~~-----~-~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (282)
                      ++||+|+.|++.     + ...++..++.++   |+|||.++- -+--+|.-   -.+.+-..++.+-++.+    +|+.
T Consensus       204 ~sfDaIiHDPPRfS~AgeLYseefY~El~Ri---LkrgGrlFH-YvG~Pg~r---yrG~d~~~gVa~RLr~v----GF~~  272 (287)
T COG2521         204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRI---LKRGGRLFH-YVGNPGKR---YRGLDLPKGVAERLRRV----GFEV  272 (287)
T ss_pred             cccceEeeCCCccchhhhHhHHHHHHHHHHH---cCcCCcEEE-EeCCCCcc---cccCChhHHHHHHHHhc----Ccee
Confidence            789999999871     1 134577777787   999999764 33333321   11222334455544433    7887


Q ss_pred             EEeecCCceEEEEEC
Q 023411          268 SMVPIGDGMTICQKR  282 (282)
Q Consensus       268 ~~lp~~~Gl~~~~k~  282 (282)
                      +-.-..+|-.+|+|+
T Consensus       273 v~~~~~~~gv~A~k~  287 (287)
T COG2521         273 VKKVREALGVVAVKP  287 (287)
T ss_pred             eeeehhccceEEecC
Confidence            666666666777764

>PHA03412 putative methyltransferase; Provisional

Probab=99.09  E-value=2.1e-09  Score=91.80  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=82.6

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC--CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ....+..+..+.  .......+|||+|||+|.+++.+++.++  +..+|+++|+++.+++.|++++.      ++.++++
T Consensus        33 FfTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~  104 (241)
T PHA03412         33 FFTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINA  104 (241)
T ss_pred             cCCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEc
Confidence            334444444432  1223467999999999999999998753  24699999999999999998753      3789999


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCcc-----c----------cHHHHHHHHHhhcCCCCCcEEEEeCCC---CCCcc
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKR-----M----------YQEYFELLLQLLLQIRVGGIIVIDNVL---WHGKV  239 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~-----~----------~~~~l~~~~~~~~~LkpgG~lv~dd~~---~~g~~  239 (282)
                      |+.+..  .     .++||+|+.+++..     +          ...++..+.++   +++|+.|+=.+++   ++|..
T Consensus       105 D~~~~~--~-----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~L---l~~G~~ILP~~~~~~~y~~~~  173 (241)
T PHA03412        105 DALTTE--F-----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQI---ARQGTFIIPQMSANFRYSGTH  173 (241)
T ss_pred             chhccc--c-----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHH---cCCCEEEeCcccccCcccCcc
Confidence            986532  1     46899999987621     1          12244555555   8888875555554   55553

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.09  E-value=3e-09  Score=98.09  Aligned_cols=100  Identities=15%  Similarity=0.232  Sum_probs=83.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      ..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++.+ ++++++|+.+.+..      .++||+|
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~------~~~fD~V  129 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE------ERKFDVV  129 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh------cCCCCEE
Confidence            35899999999999999998764 4589999999999999999999999874 78999999766542      2579999


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++|+. .....+++.....   +++||++.+.
T Consensus       130 ~lDP~-Gs~~~~l~~al~~---~~~~gilyvS  157 (382)
T PRK04338        130 DIDPF-GSPAPFLDSAIRS---VKRGGLLCVT  157 (382)
T ss_pred             EECCC-CCcHHHHHHHHHH---hcCCCEEEEE
Confidence            99975 4445677776666   8999999996

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.07  E-value=9.1e-10  Score=95.81  Aligned_cols=106  Identities=22%  Similarity=0.369  Sum_probs=85.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC---CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++||-||-|.|..+..+++.-+ ..+++.||+++..++.+++.+.....   ++|++++.+|+...+...     .+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~  148 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QE  148 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SS
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cC
Confidence            3688999999999999999987643 57999999999999999999876432   468999999999888765     45


Q ss_pred             -ceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 -SYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 -~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                       +||+|++|...+       ...++++.+.+.   |+|||++++..
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~---L~~~Gv~v~~~  191 (246)
T PF01564_consen  149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRR---LKPDGVLVLQA  191 (246)
T ss_dssp             T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             CcccEEEEeCCCCCCCcccccCHHHHHHHHhh---cCCCcEEEEEc
Confidence             899999986631       246799999999   99999999864

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=1.4e-08  Score=83.21  Aligned_cols=87  Identities=17%  Similarity=0.287  Sum_probs=70.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .++.|+|+|||||.+++..+..-+  .+|+++|+++++++.+++|.++  +..++.++.+|+.+.         ...+|.
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~---------~~~~dt  111 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF---------RGKFDT  111 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc---------CCccce
Confidence            567899999999999998876533  7899999999999999999998  445699999999765         689999


Q ss_pred             EEEcCC-----ccccHHHHHHHHHh
Q 023411          199 AFVDAE-----KRMYQEYFELLLQL  218 (282)
Q Consensus       199 V~id~~-----~~~~~~~l~~~~~~  218 (282)
                      ++++++     .+.-..+++...+.
T Consensus       112 vimNPPFG~~~rhaDr~Fl~~Ale~  136 (198)
T COG2263         112 VIMNPPFGSQRRHADRPFLLKALEI  136 (198)
T ss_pred             EEECCCCccccccCCHHHHHHHHHh
Confidence            999877     23344566666665

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.07  E-value=3.1e-09  Score=87.65  Aligned_cols=112  Identities=20%  Similarity=0.364  Sum_probs=74.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--CCCcEEEEEcchhhHH-HHHHhCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSL-KALILNGE  192 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~~~l-~~l~~~~~  192 (282)
                      ...++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++  ...++.+..-|..+.. +...   +
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~  116 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---E  116 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S
T ss_pred             hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---c
Confidence            345788999999999999999998743 57999999988 9999999999887  5667888887765532 2221   1


Q ss_pred             CCceeEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          193 ASSYDFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       193 ~~~fDlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      ..+||+|+....   ...+..++..+..+   |+++|.+++..-.+
T Consensus       117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~l---l~~~~~vl~~~~~R  159 (173)
T PF10294_consen  117 PHSFDVILASDVLYDEELFEPLVRTLKRL---LKPNGKVLLAYKRR  159 (173)
T ss_dssp             -SSBSEEEEES--S-GGGHHHHHHHHHHH---BTT-TTEEEEEE-S
T ss_pred             cccCCEEEEecccchHHHHHHHHHHHHHH---hCCCCEEEEEeCEe
Confidence            468999996433   45577888999998   99998866654443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.06  E-value=1.4e-09  Score=91.40  Aligned_cols=100  Identities=20%  Similarity=0.259  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++..|+|..||.|++++.+|+..+ ..+|+++|++|.+++..+++++.+++.+++..+++|+.+..+       .+.+|
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-------~~~~d  171 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-------EGKFD  171 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-EE
T ss_pred             CcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-------ccccC
Confidence            4677999999999999999998543 578999999999999999999999999999999999988766       48999


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      .|+++.+... ..++..+..+   +++||++-
T Consensus       172 rvim~lp~~~-~~fl~~~~~~---~~~~g~ih  199 (200)
T PF02475_consen  172 RVIMNLPESS-LEFLDAALSL---LKEGGIIH  199 (200)
T ss_dssp             EEEE--TSSG-GGGHHHHHHH---EEEEEEEE
T ss_pred             EEEECChHHH-HHHHHHHHHH---hcCCcEEE
Confidence            9999876443 3678888888   99999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.2e-09  Score=93.79  Aligned_cols=104  Identities=19%  Similarity=0.201  Sum_probs=88.8

Q ss_pred             CCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE
Q 023411           97 RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (282)
Q Consensus        97 ~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~  176 (282)
                      ++..-++......++.++....++.+|+|-|+|+|..+.++++.+.+.|+++.+|..+...+.|.+.++..|+.++++++
T Consensus        83 phRTQI~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~  162 (314)
T KOG2915|consen   83 PHRTQILYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVT  162 (314)
T ss_pred             cCcceEEecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEE
Confidence            33344566667778888899999999999999999999999999988999999999999999999999999999999999


Q ss_pred             EcchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411          177 HGLAADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       177 ~gd~~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      +-|.+..-....    +..+|.||+|-+
T Consensus       163 hrDVc~~GF~~k----s~~aDaVFLDlP  186 (314)
T KOG2915|consen  163 HRDVCGSGFLIK----SLKADAVFLDLP  186 (314)
T ss_pred             EeecccCCcccc----ccccceEEEcCC
Confidence            999875322111    578999999976

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.03  E-value=4.9e-09  Score=95.95  Aligned_cols=125  Identities=18%  Similarity=0.120  Sum_probs=88.6

Q ss_pred             CCCCccCHHHHHHHHHH-HhhcC--CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411           98 GSQMQVSPDQAQLLAML-VQILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l-~~~~~--~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (282)
                      .+..++++.....+... .....  +.+|||+|||+|.+++.+++..   .+|++||+++++++.++++++.+++.+ ++
T Consensus       173 ~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~  248 (353)
T TIGR02143       173 NSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQ  248 (353)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EE
Confidence            34556666665555433 33222  3479999999999999999875   489999999999999999999999864 99


Q ss_pred             EEEcchhhHHHHHHh-------CC---CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          175 IKHGLAADSLKALIL-------NG---EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       175 ~~~gd~~~~l~~l~~-------~~---~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++.+|+.+.++....       .+   ....||+||+|++......  +.+..+   .+|++++.+.
T Consensus       249 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~--~~l~~l---~~~~~ivYvs  310 (353)
T TIGR02143       249 IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDP--DTCKLV---QAYERILYIS  310 (353)
T ss_pred             EEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcH--HHHHHH---HcCCcEEEEE
Confidence            999999887654211       00   0124899999998544322  233444   5678888874

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.01  E-value=5.7e-09  Score=93.81  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC----CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+|+.+++.++++.+..+.    ..++++..+|..+    +     .+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~----l-----~~  211 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES----L-----SG  211 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh----c-----CC
Confidence            5679999999999999999974   47999999999999999999876532    2357888888643    2     47


Q ss_pred             ceeEEEEcCCccccH-----HHHHHHHHhhcCCCCCcEEEE
Q 023411          195 SYDFAFVDAEKRMYQ-----EYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       195 ~fDlV~id~~~~~~~-----~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +||+|++.....++.     ..+..+..    +.+||+++.
T Consensus       212 ~fD~Vv~~~vL~H~p~~~~~~ll~~l~~----l~~g~liIs  248 (315)
T PLN02585        212 KYDTVTCLDVLIHYPQDKADGMIAHLAS----LAEKRLIIS  248 (315)
T ss_pred             CcCEEEEcCEEEecCHHHHHHHHHHHHh----hcCCEEEEE
Confidence            899998765533332     22333332    456666654

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.01  E-value=9e-09  Score=91.76  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      +.+++.....+...+...++.+|||||||+|..|..++..   ..+|+++|+|+.+++.+++++...+..++++++++|+
T Consensus        18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da   94 (294)
T PTZ00338         18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA   94 (294)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            3445555555555555667789999999999999999986   3589999999999999999998877666799999999


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCcccc
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRMY  208 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~  208 (282)
                      .+..        ...||.|+.+.+..-.
T Consensus        95 l~~~--------~~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         95 LKTE--------FPYFDVCVANVPYQIS  114 (294)
T ss_pred             hhhc--------ccccCEEEecCCcccC
Confidence            7642        2578999988775433

>PHA03411 putative methyltransferase; Provisional

Probab=99.01  E-value=2.2e-09  Score=93.69  Aligned_cols=73  Identities=8%  Similarity=0.076  Sum_probs=60.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ....+|||+|||+|.+++.++...+ ..+|+++|+++.+++.+++++      .+++++++|+.+...       ..+||
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-------~~kFD  128 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-------NEKFD  128 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-------cCCCc
Confidence            3457999999999999999888754 479999999999999998864      258999999976532       46899


Q ss_pred             EEEEcCC
Q 023411          198 FAFVDAE  204 (282)
Q Consensus       198 lV~id~~  204 (282)
                      +|+++.+
T Consensus       129 lIIsNPP  135 (279)
T PHA03411        129 VVISNPP  135 (279)
T ss_pred             EEEEcCC
Confidence            9999866

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.00  E-value=8.2e-09  Score=94.82  Aligned_cols=101  Identities=13%  Similarity=0.162  Sum_probs=86.9

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      .+|||..||+|..++.++...+.-.+|+++|++++.++.+++|++.++.. +++++++|+...+...     ..+||+|+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvId  119 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVID  119 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEE
Confidence            48999999999999999987542358999999999999999999998876 4899999998877654     46899999


Q ss_pred             EcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          201 VDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       201 id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|+ ......+++.+.+.   +++||+|.+.
T Consensus       120 lDP-fGs~~~fld~al~~---~~~~glL~vT  146 (374)
T TIGR00308       120 IDP-FGTPAPFVDSAIQA---SAERGLLLVT  146 (374)
T ss_pred             eCC-CCCcHHHHHHHHHh---cccCCEEEEE
Confidence            999 45556788888888   9999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=7e-09  Score=96.84  Aligned_cols=124  Identities=21%  Similarity=0.228  Sum_probs=101.7

Q ss_pred             CCCCCccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411           97 RGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (282)
Q Consensus        97 ~~~~~~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (282)
                      +.++.+.++...+.|...+.    ..+.++++|+-||.|.+++.+|..   ..+|+|+|+++++++.|++|++.+++.+ 
T Consensus       267 ~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-  342 (432)
T COG2265         267 PRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-  342 (432)
T ss_pred             CCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-
Confidence            34677888888777776653    346789999999999999999965   3699999999999999999999999998 


Q ss_pred             EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccH-HHHHHHHHhhcCCCCCcEEEEe
Q 023411          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~-~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++|+.+++.+..+...   ....+|.|++|++..... .+++.+.+    ++|..++.+.
T Consensus       343 ~~f~~~~ae~~~~~~~---~~~~~d~VvvDPPR~G~~~~~lk~l~~----~~p~~IvYVS  395 (432)
T COG2265         343 VEFIAGDAEEFTPAWW---EGYKPDVVVVDPPRAGADREVLKQLAK----LKPKRIVYVS  395 (432)
T ss_pred             EEEEeCCHHHHhhhcc---ccCCCCEEEECCCCCCCCHHHHHHHHh----cCCCcEEEEe
Confidence            9999999988766542   135889999999965544 67777777    5888888885

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.97  E-value=1.2e-09  Score=88.39  Aligned_cols=78  Identities=22%  Similarity=0.266  Sum_probs=58.9

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +.|+|+.||.|+.++.+|+.+   .+|++||+++..++.++.|.+-.|+.++++++++|+.+.++.+..   ...+|+||
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vF   74 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVF   74 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEE
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEE
Confidence            369999999999999999975   489999999999999999999999999999999999986654321   12289999


Q ss_pred             EcCC
Q 023411          201 VDAE  204 (282)
Q Consensus       201 id~~  204 (282)
                      ++++
T Consensus        75 lSPP   78 (163)
T PF09445_consen   75 LSPP   78 (163)
T ss_dssp             E---
T ss_pred             ECCC
Confidence            9865

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.97  E-value=7.3e-09  Score=82.89  Aligned_cols=124  Identities=22%  Similarity=0.142  Sum_probs=97.3

Q ss_pred             CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (282)
                      ++....++-.++.+...+....+..|||+|.|+|.+|..++++.-+...++++|.|+++.....+.+.      .++++.
T Consensus        27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~  100 (194)
T COG3963          27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIIN  100 (194)
T ss_pred             eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccc
Confidence            44556677788888888888888999999999999999999887667899999999999988777654      377999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+.+.-..+.+.. ...||.||+.-+     .+.....++.+...   |++||.++--
T Consensus       101 gda~~l~~~l~e~~-gq~~D~viS~lPll~~P~~~~iaile~~~~r---l~~gg~lvqf  155 (194)
T COG3963         101 GDAFDLRTTLGEHK-GQFFDSVISGLPLLNFPMHRRIAILESLLYR---LPAGGPLVQF  155 (194)
T ss_pred             cchhhHHHHHhhcC-CCeeeeEEeccccccCcHHHHHHHHHHHHHh---cCCCCeEEEE
Confidence            99987543443322 578999998755     33355678888887   9999988763

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.97  E-value=8.7e-09  Score=85.45  Aligned_cols=122  Identities=14%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCC--------EEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG--------CLVACERDARSLEVAKKYYERAGVSHK  172 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~--------~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (282)
                      -.+.+..+..|..++...++..|+|--||+|.+.+..+.......        +++|+|+++++++.+++|++.+++.+.
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            367888888999999998999999999999999988776554222        499999999999999999999999989


Q ss_pred             EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +.+.++|+.+.. ..     .+++|.|++|.+...           |..+++.+.++   +++..++++.
T Consensus        90 i~~~~~D~~~l~-~~-----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~---l~~~~v~l~~  150 (179)
T PF01170_consen   90 IDFIQWDARELP-LP-----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRV---LKPRAVFLTT  150 (179)
T ss_dssp             EEEEE--GGGGG-GT-----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCH---STTCEEEEEE
T ss_pred             eEEEecchhhcc-cc-----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHH---CCCCEEEEEE
Confidence            999999998764 11     579999999987321           44556666666   9996666654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.93  E-value=1.5e-08  Score=95.15  Aligned_cols=103  Identities=16%  Similarity=0.212  Sum_probs=76.0

Q ss_pred             CCEEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          120 AQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .+.|+|+|||+|..+...+++.   ....+|++||.++.+....++.++.+++.++|+++++|..++-.       ..++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv  259 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV  259 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence            5689999999999988777654   12369999999999888888888899999999999999988633       5799


Q ss_pred             eEEEEc-----CCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          197 DFAFVD-----AEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       197 DlV~id-----~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |+|+..     +..+..++-+....+.   |||||+++=+.
T Consensus       260 DIIVSElLGsfg~nEl~pE~Lda~~rf---Lkp~Gi~IP~~  297 (448)
T PF05185_consen  260 DIIVSELLGSFGDNELSPECLDAADRF---LKPDGIMIPSS  297 (448)
T ss_dssp             EEEEE---BTTBTTTSHHHHHHHGGGG---EEEEEEEESSE
T ss_pred             eEEEEeccCCccccccCHHHHHHHHhh---cCCCCEEeCcc
Confidence            999864     1234445555555555   99999977543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.91  E-value=4e-09  Score=87.00  Aligned_cols=133  Identities=17%  Similarity=0.224  Sum_probs=91.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||.|....++.+.  ++.+.+|+|++++.+..+.+        .-+.++++|..+.+...+    +++||
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~----d~sFD   77 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFP----DQSFD   77 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCC----CCCcc
Confidence            46789999999999998888875  36899999999987654433        137899999988776654    78999


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCC--cEEEEeCC---------CCCCcccCC-----cC---CChhhHHHHHHHHH
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVG--GIIVIDNV---------LWHGKVADQ-----MV---NDAKTISIRNFNKN  258 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~Lkpg--G~lv~dd~---------~~~g~~~~~-----~~---~~~~~~~~~~~~~~  258 (282)
                      .|++.....+....-+.+.++   ||-|  +++-+-|.         ++.|.+--.     .|   ...+-..+++|.+-
T Consensus        78 ~VIlsqtLQ~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l  154 (193)
T PF07021_consen   78 YVILSQTLQAVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL  154 (193)
T ss_pred             EEehHhHHHhHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH
Confidence            999988866655555666666   6655  55556665         245553221     11   22345578888765


Q ss_pred             hhhCCCeEEE
Q 023411          259 LMEDERVSIS  268 (282)
Q Consensus       259 ~~~~~~~~~~  268 (282)
                      .++. ++.+.
T Consensus       155 c~~~-~i~I~  163 (193)
T PF07021_consen  155 CREL-GIRIE  163 (193)
T ss_pred             HHHC-CCEEE
Confidence            4433 55553

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.91  E-value=3e-09  Score=89.27  Aligned_cols=146  Identities=16%  Similarity=0.171  Sum_probs=95.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+-+++||+|||||..+..+-...   .+++|||+|+.|++.|.+.    |+-+  ++.++++..+++..    +.++||
T Consensus       124 g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~----~~er~D  190 (287)
T COG4976         124 GPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL----TQERFD  190 (287)
T ss_pred             CccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc----cCCccc
Confidence            346799999999999998887764   4899999999999888763    2222  44555665554433    268999


Q ss_pred             EEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCC---CCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEE--
Q 023411          198 FAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNV---LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM--  269 (282)
Q Consensus       198 lV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  269 (282)
                      +|..-.+   .......+-....+   |+|||.+.++-=   -|.+.+..|..+   ..=-+.|.+...+..+++++.  
T Consensus       191 Li~AaDVl~YlG~Le~~~~~aa~~---L~~gGlfaFSvE~l~~~~~f~l~ps~R---yAH~~~YVr~~l~~~Gl~~i~~~  264 (287)
T COG4976         191 LIVAADVLPYLGALEGLFAGAAGL---LAPGGLFAFSVETLPDDGGFVLGPSQR---YAHSESYVRALLAASGLEVIAIE  264 (287)
T ss_pred             chhhhhHHHhhcchhhHHHHHHHh---cCCCceEEEEecccCCCCCeecchhhh---hccchHHHHHHHHhcCceEEEee
Confidence            9986544   23344556666666   999999998632   233333333321   112244555555666777764  


Q ss_pred             ---------eecCCceEEEEEC
Q 023411          270 ---------VPIGDGMTICQKR  282 (282)
Q Consensus       270 ---------lp~~~Gl~~~~k~  282 (282)
                               -|+..++-|+||+
T Consensus       265 ~ttiR~d~g~pv~G~L~iark~  286 (287)
T COG4976         265 DTTIRRDAGEPVPGILVIARKK  286 (287)
T ss_pred             cccchhhcCCCCCCceEEEecC
Confidence                     3667788888874

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.91  E-value=5.2e-09  Score=87.85  Aligned_cols=95  Identities=17%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|.++..++...  +..++++|+++++++.+++        .+++++++|+.+.++...    +++||+
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~----~~sfD~   78 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFP----DKSFDY   78 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccC----CCCcCE
Confidence            56799999999999998888653  4678999999999887754        136888888865332121    478999


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |++....++..+....+.++   ++++|.+++
T Consensus        79 Vi~~~~l~~~~d~~~~l~e~---~r~~~~~ii  107 (194)
T TIGR02081        79 VILSQTLQATRNPEEILDEM---LRVGRHAIV  107 (194)
T ss_pred             EEEhhHhHcCcCHHHHHHHH---HHhCCeEEE
Confidence            99987654443333444444   444444433

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.89  E-value=1.6e-08  Score=86.39  Aligned_cols=128  Identities=17%  Similarity=0.204  Sum_probs=87.5

Q ss_pred             CCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH-h------C-
Q 023411           97 RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-A------G-  168 (282)
Q Consensus        97 ~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~------g-  168 (282)
                      +...-.++|....++.. ....++.+||..|||.|....+|+..   +.+|+|+|+++.+++.+.+.... .      + 
T Consensus        16 ~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~   91 (218)
T PF05724_consen   16 PWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF   91 (218)
T ss_dssp             TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE
T ss_pred             CCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccce
Confidence            34444567776666666 34556679999999999999999985   57999999999998887432211 0      0 


Q ss_pred             ---CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC-----CccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          169 ---VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       169 ---~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~-----~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                         -..+|++++||+.+..+..     .++||+|+=-.     ++.....|.+.+.++   |+|||.+++-...++
T Consensus        92 ~~~~~~~i~~~~gDfF~l~~~~-----~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~l---l~p~g~~lLi~l~~~  159 (218)
T PF05724_consen   92 KRYQAGRITIYCGDFFELPPED-----VGKFDLIYDRTFLCALPPEMRERYAQQLASL---LKPGGRGLLITLEYP  159 (218)
T ss_dssp             EEETTSSEEEEES-TTTGGGSC-----HHSEEEEEECSSTTTS-GGGHHHHHHHHHHC---EEEEEEEEEEEEES-
T ss_pred             eeecCCceEEEEcccccCChhh-----cCCceEEEEecccccCCHHHHHHHHHHHHHH---hCCCCcEEEEEEEcC
Confidence               1236899999998754322     35899998432     356678899999998   999999444334343

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.2e-08  Score=84.65  Aligned_cols=103  Identities=20%  Similarity=0.292  Sum_probs=81.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCC---------CCcEEEEEcchhhHHHH
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV---------SHKVKIKHGLAADSLKA  186 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~---------~~~v~~~~gd~~~~l~~  186 (282)
                      ..++.+.||+|+|+||.+.+++..+...+ ..+|||.-++.++.+++++...--         ..++.++.||.....++
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            56788999999999999999998775444 459999999999999999987541         24688999998765443


Q ss_pred             HHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                            ..+||.|++.+.....+   +.+...   |++||.|++-
T Consensus       160 ------~a~YDaIhvGAaa~~~p---q~l~dq---L~~gGrllip  192 (237)
T KOG1661|consen  160 ------QAPYDAIHVGAAASELP---QELLDQ---LKPGGRLLIP  192 (237)
T ss_pred             ------cCCcceEEEccCccccH---HHHHHh---hccCCeEEEe
Confidence                  58999999997755443   355566   8999988873

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.89  E-value=2e-08  Score=90.43  Aligned_cols=110  Identities=20%  Similarity=0.180  Sum_probs=93.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ...+.+|+|.-+|.|++++.+|..-.  .+|+++|+||..++..++|++.|++.+++..++||+.+..+..      +.+
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~a  257 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------GVA  257 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------ccC
Confidence            34588999999999999999998743  3499999999999999999999999999999999999887753      789


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      |-|++..... ...++.....+   +++||++-++.......
T Consensus       258 DrIim~~p~~-a~~fl~~A~~~---~k~~g~iHyy~~~~e~~  295 (341)
T COG2520         258 DRIIMGLPKS-AHEFLPLALEL---LKDGGIIHYYEFVPEDD  295 (341)
T ss_pred             CEEEeCCCCc-chhhHHHHHHH---hhcCcEEEEEeccchhh
Confidence            9999988864 34567778888   99999999987764443

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=6.6e-08  Score=78.49  Aligned_cols=102  Identities=15%  Similarity=0.235  Sum_probs=80.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +..++|||||+|..+..+++.+.++..+.++|++|++++..++..+.++..  +..++.|..+.+.       .++.|++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~-------~~~VDvL  114 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLR-------NESVDVL  114 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhc-------cCCccEE
Confidence            678999999999999999999887889999999999999999999887754  7888888776554       5899998


Q ss_pred             EEcCCc------------------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          200 FVDAEK------------------------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       200 ~id~~~------------------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +.+.+.                        .-...++.++..+   |.|.|++.+--+
T Consensus       115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~i---LSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDI---LSPRGVFYLVAL  169 (209)
T ss_pred             EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhh---cCcCceEEeeeh
Confidence            765431                        0133455666666   999999877433

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.88  E-value=9.2e-08  Score=84.99  Aligned_cols=152  Identities=20%  Similarity=0.263  Sum_probs=111.4

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+......+...++...++..|||++++.|+-|..++..+...+.+++.|+++..+...++++++.|..+ +.++..|+.
T Consensus        68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~  146 (283)
T PF01189_consen   68 YVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADAR  146 (283)
T ss_dssp             EEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHH
T ss_pred             EecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccc
Confidence            4455555566667777888999999999999999999999877999999999999999999999999886 788878887


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCC----CCCcEEEEeC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQI----RVGGIIVIDN  232 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~L----kpgG~lv~dd  232 (282)
                      ...+...    ...||.|++|++...                         ....++.+.++   +    +|||++|..-
T Consensus       147 ~~~~~~~----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~---~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  147 KLDPKKP----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL---LNIDFKPGGRLVYST  219 (283)
T ss_dssp             HHHHHHH----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC---EHHHBEEEEEEEEEE
T ss_pred             ccccccc----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh---hcccccCCCeEEEEe
Confidence            7655442    356999999976110                         22244555555   9    9999999865


Q ss_pred             CCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeec
Q 023411          233 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI  272 (282)
Q Consensus       233 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~  272 (282)
                      .-..        ..++...++.|++.   .++++.+-.+.
T Consensus       220 CS~~--------~eENE~vV~~fl~~---~~~~~l~~~~~  248 (283)
T PF01189_consen  220 CSLS--------PEENEEVVEKFLKR---HPDFELVPIPL  248 (283)
T ss_dssp             SHHH--------GGGTHHHHHHHHHH---STSEEEECCES
T ss_pred             ccHH--------HHHHHHHHHHHHHh---CCCcEEEeccc
Confidence            4322        22345567788763   56666654443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.88  E-value=2.8e-08  Score=87.19  Aligned_cols=93  Identities=14%  Similarity=0.087  Sum_probs=73.9

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      .+.+++.....+...+...++++|||||||+|..+..+++.   ..+|+++|+++.+++.+++++..   .++++++++|
T Consensus        10 nfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D   83 (258)
T PRK14896         10 HFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGD   83 (258)
T ss_pred             cccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEec
Confidence            34566666666776666677889999999999999999986   36899999999999999988754   3469999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCcc
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKR  206 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~  206 (282)
                      +.+..        ...||.|+.+.+..
T Consensus        84 ~~~~~--------~~~~d~Vv~NlPy~  102 (258)
T PRK14896         84 ALKVD--------LPEFNKVVSNLPYQ  102 (258)
T ss_pred             cccCC--------chhceEEEEcCCcc
Confidence            97642        24579998876644

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.88  E-value=2.3e-08  Score=89.87  Aligned_cols=84  Identities=14%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEE-cchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKH-GLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~-gd~~~~l~~l~~~~~~~~f  196 (282)
                      ...+|||||||+|.+...++...+ +.+++|+|+++.+++.|+++++.+ ++.+++++++ .+..+....+..  ..+.|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~--~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH--KNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc--cCCce
Confidence            457999999999999888887765 689999999999999999999999 7988899875 344333332211  14689


Q ss_pred             eEEEEcCCc
Q 023411          197 DFAFVDAEK  205 (282)
Q Consensus       197 DlV~id~~~  205 (282)
                      |+|+++++.
T Consensus       191 DlivcNPPf  199 (321)
T PRK11727        191 DATLCNPPF  199 (321)
T ss_pred             EEEEeCCCC
Confidence            999999873

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=6.3e-08  Score=88.67  Aligned_cols=144  Identities=18%  Similarity=0.266  Sum_probs=107.1

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ...++.....+...++...++.+|||..++.|+=|..++..++. ++.|+++|+++..+...++++++.|+.+ +.+++.
T Consensus       137 ~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~  215 (355)
T COG0144         137 LIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNK  215 (355)
T ss_pred             EEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEec
Confidence            34566677777788888899999999999999999999999874 3567999999999999999999999987 888888


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+........   ..++||.|++|++...                         ..+.++...++   |||||+||....
T Consensus       216 d~~~~~~~~~---~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~---lk~GG~LVYSTC  289 (355)
T COG0144         216 DARRLAELLP---GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKL---LKPGGVLVYSTC  289 (355)
T ss_pred             cccccccccc---ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEcc
Confidence            8754332221   0236999999976110                         23355555666   999999999877


Q ss_pred             CCCCcccCCcCCChhhHHHHHHHHH
Q 023411          234 LWHGKVADQMVNDAKTISIRNFNKN  258 (282)
Q Consensus       234 ~~~g~~~~~~~~~~~~~~~~~~~~~  258 (282)
                      -..-.        ++..-+..|++.
T Consensus       290 S~~~e--------ENE~vV~~~L~~  306 (355)
T COG0144         290 SLTPE--------ENEEVVERFLER  306 (355)
T ss_pred             CCchh--------cCHHHHHHHHHh
Confidence            54433        233445666543

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.86  E-value=1.7e-08  Score=85.38  Aligned_cols=111  Identities=17%  Similarity=0.311  Sum_probs=77.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC-----------------------------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-----------------------------  169 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----------------------------  169 (282)
                      .+..+|||||-+|..|+.+++.+. .-.+.|+||++..+..|+++++..--                             
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a  136 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA  136 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence            567899999999999999999986 45799999999999999998764210                             


Q ss_pred             -----CCcEEEEEcch----hhHHHHHHhCCCCCceeEEEEcC---------CccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          170 -----SHKVKIKHGLA----ADSLKALILNGEASSYDFAFVDA---------EKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       170 -----~~~v~~~~gd~----~~~l~~l~~~~~~~~fDlV~id~---------~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                           .+++.+...+.    .|++..     ....||+|+|-.         ..+....+|..+.++   |.|||+||++
T Consensus       137 ~t~~~p~n~~f~~~n~vle~~dfl~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~l---l~pgGiLvvE  208 (288)
T KOG2899|consen  137 FTTDFPDNVWFQKENYVLESDDFLDM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSL---LHPGGILVVE  208 (288)
T ss_pred             ccccCCcchhcccccEEEecchhhhh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHh---hCcCcEEEEc
Confidence                 00111111111    112211     157999998632         233466788888888   9999999997


Q ss_pred             CCCCCCc
Q 023411          232 NVLWHGK  238 (282)
Q Consensus       232 d~~~~g~  238 (282)
                      -=-|..-
T Consensus       209 PQpWksY  215 (288)
T KOG2899|consen  209 PQPWKSY  215 (288)
T ss_pred             CCchHHH
Confidence            6655543

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.85  E-value=1.2e-08  Score=88.44  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=82.1

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +.......+.++|+|||+|+|..+..+++..| +.+++.+|. |+.++.+++       .+|++++.||..+.+      
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~------  156 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL------  156 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC------
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh------
Confidence            33444455678999999999999999999998 889999999 888888877       568999999998533      


Q ss_pred             CCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCC--cEEEEeCCCCCCc
Q 023411          191 GEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVG--GIIVIDNVLWHGK  238 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~Lkpg--G~lv~dd~~~~g~  238 (282)
                        +. +|++++-...++     ....++.+.+.   |+||  |.|++.+.+.+..
T Consensus       157 --P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~a---l~pg~~g~llI~e~~~~~~  205 (241)
T PF00891_consen  157 --PV-ADVYLLRHVLHDWSDEDCVKILRNAAAA---LKPGKDGRLLIIEMVLPDD  205 (241)
T ss_dssp             --SS-ESEEEEESSGGGS-HHHHHHHHHHHHHH---SEECTTEEEEEEEEEECSS
T ss_pred             --cc-ccceeeehhhhhcchHHHHHHHHHHHHH---hCCCCCCeEEEEeeccCCC
Confidence              24 999998766544     34467777777   9999  9998888876554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.84  E-value=2.1e-08  Score=89.82  Aligned_cols=118  Identities=20%  Similarity=0.227  Sum_probs=97.5

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-c
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-L  179 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d  179 (282)
                      ..+.|..+..+.++++..++..|||=-||||++.+.....   +++++|+|++..|++-|+.|++..++++ ..+..+ |
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D  254 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD  254 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence            4789999999999999999999999999999998877753   6899999999999999999999999776 555555 8


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCcc------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~------------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +.+. + +.    +.++|.|.+|++..            -+.++++.+.++   |++||++++-
T Consensus       255 a~~l-p-l~----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~ev---Lk~gG~~vf~  309 (347)
T COG1041         255 ATNL-P-LR----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEV---LKPGGRIVFA  309 (347)
T ss_pred             cccC-C-CC----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHH---hhcCcEEEEe
Confidence            8654 3 31    34699999998722            156677788888   9999998884

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.83  E-value=1.5e-08  Score=90.41  Aligned_cols=109  Identities=19%  Similarity=0.252  Sum_probs=79.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...+++.|||+|||+|..+.+.|++..  .+|++||.+ ++++.|++.+..+++.+.+++++|.+.+.  .++    .++
T Consensus        57 ~lf~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP----~eK  127 (346)
T KOG1499|consen   57 HLFKDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI--ELP----VEK  127 (346)
T ss_pred             hhcCCCEEEEcCCCccHHHHHHHHhCc--ceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE--ecC----ccc
Confidence            356889999999999999999999753  689999987 46699999999999999999999999875  332    389


Q ss_pred             eeEEEEcCC--ccccHHHHHHHH-HhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAE--KRMYQEYFELLL-QLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~--~~~~~~~l~~~~-~~~~~LkpgG~lv~dd~  233 (282)
                      .|+|+..--  .--+...++.+. .--+||+|||.++=+-.
T Consensus       128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a  168 (346)
T KOG1499|consen  128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA  168 (346)
T ss_pred             eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence            999986421  000111111111 11356999999875533

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.83  E-value=2.1e-08  Score=89.05  Aligned_cols=83  Identities=23%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++..+||.+||.|+.|..+++.+++.++|+|+|.++++++.+++.+..   .++++++++|+.+....+.. + ..++
T Consensus        17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~-~-~~~v   91 (296)
T PRK00050         17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE-G-LGKV   91 (296)
T ss_pred             CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc-C-CCcc
Confidence            35667999999999999999999987679999999999999999998765   45799999999887655432 1 2389


Q ss_pred             eEEEEcCC
Q 023411          197 DFAFVDAE  204 (282)
Q Consensus       197 DlV~id~~  204 (282)
                      |.|++|-+
T Consensus        92 DgIl~DLG   99 (296)
T PRK00050         92 DGILLDLG   99 (296)
T ss_pred             CEEEECCC
Confidence            99998854

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.81  E-value=7.3e-08  Score=82.45  Aligned_cols=134  Identities=10%  Similarity=0.006  Sum_probs=88.9

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH-----------hC
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-----------AG  168 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-----------~g  168 (282)
                      ...+++...+.+..+. ..++.+||..|||.|....+|+..   +.+|+|+|+|+.+++.+.+....           .-
T Consensus        25 ~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~  100 (226)
T PRK13256         25 QESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLY  100 (226)
T ss_pred             cCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceeccccccee
Confidence            3345555444444432 224579999999999999999985   57899999999999887552100           00


Q ss_pred             CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC-----CccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCc
Q 023411          169 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQM  243 (282)
Q Consensus       169 ~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~-----~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~  243 (282)
                      -...++++++|+.+..+..   ...++||+|+--+     +++....|.+.+.++   |+|||.+++-..-.++....|.
T Consensus       101 ~~~~i~~~~gD~f~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~l---L~pgg~llll~~~~~~~~~GPP  174 (226)
T PRK13256        101 KGDDIEIYVADIFNLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEV---CSNNTQILLLVMEHDKKSQTPP  174 (226)
T ss_pred             ccCceEEEEccCcCCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHH---hCCCcEEEEEEEecCCCCCCCC
Confidence            1236899999998753210   0036899986432     355577789999998   9999988775444443333333

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.80  E-value=1.6e-08  Score=84.44  Aligned_cols=100  Identities=21%  Similarity=0.265  Sum_probs=77.8

Q ss_pred             CCccCHHH-HHHHHHHH-hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411          100 QMQVSPDQ-AQLLAMLV-QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (282)
Q Consensus       100 ~~~~~~~~-~~ll~~l~-~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (282)
                      ...+.|+. +..++..+ ....+..|+|.-||.|+.++.++...   ..|++||++|.-+..|+.|++-.|+.++|+|++
T Consensus        73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~  149 (263)
T KOG2730|consen   73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFIC  149 (263)
T ss_pred             eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence            33444443 33333333 33377899999999999999988764   589999999999999999999999999999999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      ||..+....+...  ...+|+||..++
T Consensus       150 GD~ld~~~~lq~~--K~~~~~vf~spp  174 (263)
T KOG2730|consen  150 GDFLDLASKLKAD--KIKYDCVFLSPP  174 (263)
T ss_pred             chHHHHHHHHhhh--hheeeeeecCCC
Confidence            9999987665332  456889998765

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.80  E-value=5.8e-08  Score=92.93  Aligned_cols=103  Identities=16%  Similarity=0.163  Sum_probs=82.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ....+||||||.|.+...+|...| +..++|+|+....+..+.+.....++.| +.++++|+......++    ++++|.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~----~~sv~~  420 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLP----NNSLDG  420 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcC----cccccE
Confidence            356899999999999999999988 7899999999999988888888888865 8898888754443332    467888


Q ss_pred             EEE---cCCcc--c------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFV---DAEKR--M------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~i---d~~~~--~------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |++   |+|+.  +      .+.+++.+.+.   |+|||.+.+
T Consensus       421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~---Lk~gG~i~~  460 (506)
T PRK01544        421 IYILFPDPWIKNKQKKKRIFNKERLKILQDK---LKDNGNLVF  460 (506)
T ss_pred             EEEECCCCCCCCCCccccccCHHHHHHHHHh---cCCCCEEEE
Confidence            876   55521  1      56788999998   999998876

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.80  E-value=8.1e-09  Score=87.40  Aligned_cols=107  Identities=20%  Similarity=0.214  Sum_probs=77.4

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      .+|||||||.|....-+.+..+. +-.++++|.+|.+++..+++.....  .++.....|...  +.+....+.+++|+|
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~--~~~~~~~~~~svD~i  148 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTS--PSLKEPPEEGSVDII  148 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccc--hhccCCCCcCccceE
Confidence            37999999999999999987762 2689999999999999888765432  344444444432  222222246788876


Q ss_pred             EE-----cCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          200 FV-----DAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       200 ~i-----d~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .+     ...++.....++.+.++   |||||.|++-|..
T Consensus       149 t~IFvLSAi~pek~~~a~~nl~~l---lKPGG~llfrDYg  185 (264)
T KOG2361|consen  149 TLIFVLSAIHPEKMQSVIKNLRTL---LKPGGSLLFRDYG  185 (264)
T ss_pred             EEEEEEeccChHHHHHHHHHHHHH---hCCCcEEEEeecc
Confidence            43     23355677788889888   9999999998875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.79  E-value=4.4e-08  Score=86.64  Aligned_cols=103  Identities=11%  Similarity=0.018  Sum_probs=74.5

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      +.+++.....+...+...++.+|||||||+|..+..+++..   .+|+++|+++++++.+++++..    .+++++++|+
T Consensus        24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~   96 (272)
T PRK00274         24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDA   96 (272)
T ss_pred             cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChh
Confidence            44555555555555566677899999999999999999874   4899999999999999887642    4699999999


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHH
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~  216 (282)
                      .+....      .-.+|.|+.+.+..-....+..+.
T Consensus        97 ~~~~~~------~~~~~~vv~NlPY~iss~ii~~~l  126 (272)
T PRK00274         97 LKVDLS------ELQPLKVVANLPYNITTPLLFHLL  126 (272)
T ss_pred             hcCCHH------HcCcceEEEeCCccchHHHHHHHH
Confidence            865211      111578887766554444444443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.77  E-value=8.3e-08  Score=83.96  Aligned_cols=97  Identities=13%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      +.+++.....+...+...++.+|||||||+|..+..+++..+   +|+++|+++.+++.+++++..   ..+++++++|+
T Consensus        11 fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~   84 (253)
T TIGR00755        11 FLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDA   84 (253)
T ss_pred             cCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECch
Confidence            445566655566666666788999999999999999998753   699999999999999887743   34699999999


Q ss_pred             hhHHHHHHhCCCCCcee---EEEEcCCccccHHH
Q 023411          181 ADSLKALILNGEASSYD---FAFVDAEKRMYQEY  211 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fD---lV~id~~~~~~~~~  211 (282)
                      .+...        ..+|   +|+.+.+.......
T Consensus        85 ~~~~~--------~~~d~~~~vvsNlPy~i~~~i  110 (253)
T TIGR00755        85 LKVDL--------PDFPKQLKVVSNLPYNISSPL  110 (253)
T ss_pred             hcCCh--------hHcCCcceEEEcCChhhHHHH
Confidence            76432        2344   67666554433333

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.77  E-value=1e-08  Score=86.20  Aligned_cols=138  Identities=18%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ...+.||+|+|.|..|..++...  --+|..||..+.+++.|++++.... ....++++....++.|.      ..+||+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~------~~~YDl  125 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE------EGKYDL  125 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----------TT-EEE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC------CCcEeE
Confidence            45699999999999998766433  2589999999999999998776421 23357777777777664      479999


Q ss_pred             EEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEE-eCCCCCCc-ccCCcCCChhhHHHHHHHHHhhhCCCeEEEEe
Q 023411          199 AFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVI-DNVLWHGK-VADQMVNDAKTISIRNFNKNLMEDERVSISMV  270 (282)
Q Consensus       199 V~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~-dd~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (282)
                      |++.-.     ..+...+++.|...   |+|||+||+ +|+...|. +.++.+..- |.....| +.+.++.+++++.-
T Consensus       126 IW~QW~lghLTD~dlv~fL~RCk~~---L~~~G~IvvKEN~~~~~~~~~D~~DsSv-TRs~~~~-~~lF~~AGl~~v~~  199 (218)
T PF05891_consen  126 IWIQWCLGHLTDEDLVAFLKRCKQA---LKPNGVIVVKENVSSSGFDEFDEEDSSV-TRSDEHF-RELFKQAGLRLVKE  199 (218)
T ss_dssp             EEEES-GGGS-HHHHHHHHHHHHHH---EEEEEEEEEEEEEESSSEEEEETTTTEE-EEEHHHH-HHHHHHCT-EEEEE
T ss_pred             EEehHhhccCCHHHHHHHHHHHHHh---CcCCcEEEEEecCCCCCCcccCCccCee-ecCHHHH-HHHHHHcCCEEEEe
Confidence            998754     33466688888888   999999999 56655554 444443221 1122222 23334456666543

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.75  E-value=5.8e-08  Score=81.22  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=83.9

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH--hCCCCCceeEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI--LNGEASSYDFA  199 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~--~~~~~~~fDlV  199 (282)
                      +|||||||||-.+.++++.+| ..+-...|.++....-.++.+...++.+-..-+.-|+.+......  .....++||.|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence            599999999999999999998 688889999998888888888888876533444445443211110  00014699999


Q ss_pred             EEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCC-CCcccCC
Q 023411          200 FVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLW-HGKVADQ  242 (282)
Q Consensus       200 ~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~-~g~~~~~  242 (282)
                      |+-+.     ......+|+.+.++   |++||+|++-..+. +|....+
T Consensus       107 ~~~N~lHI~p~~~~~~lf~~a~~~---L~~gG~L~~YGPF~~~G~~ts~  152 (204)
T PF06080_consen  107 FCINMLHISPWSAVEGLFAGAARL---LKPGGLLFLYGPFNRDGKFTSE  152 (204)
T ss_pred             eehhHHHhcCHHHHHHHHHHHHHh---CCCCCEEEEeCCcccCCEeCCc
Confidence            98644     33455677888887   99999999988774 4544433

The function of this family is unknown.

>PRK00536 speE spermidine synthase; Provisional

Probab=98.72  E-value=1.8e-07  Score=81.71  Aligned_cols=100  Identities=9%  Similarity=0.070  Sum_probs=78.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHHhCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ....+++||=||.|-|.....++++ +  .+|+-||++++.++.+++.+....   -+.|++++..    . ...    .
T Consensus        69 ~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~----~  136 (262)
T PRK00536         69 TKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDL----D  136 (262)
T ss_pred             hCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhc----c
Confidence            3457899999999999999999987 3  399999999999999999665421   2467888751    1 111    1


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .++||+|++|...  ..++++.+.+.   |+|||+++.+.
T Consensus       137 ~~~fDVIIvDs~~--~~~fy~~~~~~---L~~~Gi~v~Qs  171 (262)
T PRK00536        137 IKKYDLIICLQEP--DIHKIDGLKRM---LKEDGVFISVA  171 (262)
T ss_pred             CCcCCEEEEcCCC--ChHHHHHHHHh---cCCCcEEEECC
Confidence            3789999999653  35778889998   99999999964

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.67  E-value=2.6e-08  Score=84.38  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=69.2

Q ss_pred             HHHHHHhhcCCC-EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          110 LLAMLVQILGAQ-RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       110 ll~~l~~~~~~~-~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      ++..++...++. .++|+|||+|..++.++.+.   -+|+|+|+++.|++.|++..+..-.....++...+..+    + 
T Consensus        23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~----L-   94 (261)
T KOG3010|consen   23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD----L-   94 (261)
T ss_pred             HHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccccc----c-
Confidence            334444333332 79999999997778788775   48999999999999888754321111111111111111    1 


Q ss_pred             hCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCc-EEEE
Q 023411          189 LNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGG-IIVI  230 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG-~lv~  230 (282)
                       .+.+++.|+|.+--..  =+...+++.+.++   ||+.| ++.+
T Consensus        95 -~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rv---LRk~Gg~iav  135 (261)
T KOG3010|consen   95 -LGGEESVDLITAAQAVHWFDLERFYKEAYRV---LRKDGGLIAV  135 (261)
T ss_pred             -cCCCcceeeehhhhhHHhhchHHHHHHHHHH---cCCCCCEEEE
Confidence             1126899999875432  2466788889888   98876 7766

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.67  E-value=1.7e-07  Score=77.89  Aligned_cols=96  Identities=20%  Similarity=0.382  Sum_probs=80.6

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      +++|||+|.|.-++.++-..| +.+++.+|....-+...+......|+++ ++++++++.+  +..     ..+||+|+.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~-----~~~fd~v~a  121 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEY-----RESFDVVTA  121 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTT-----TT-EEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--ccc-----CCCccEEEe
Confidence            899999999999999998887 7899999999999999999999999985 9999999976  111     689999999


Q ss_pred             cCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          202 DAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       202 d~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      -+... ...+++.+.++   +++||.+++
T Consensus       122 RAv~~-l~~l~~~~~~~---l~~~G~~l~  146 (184)
T PF02527_consen  122 RAVAP-LDKLLELARPL---LKPGGRLLA  146 (184)
T ss_dssp             ESSSS-HHHHHHHHGGG---EEEEEEEEE
T ss_pred             ehhcC-HHHHHHHHHHh---cCCCCEEEE
Confidence            88754 55778889998   999999887

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.66  E-value=6.4e-08  Score=80.94  Aligned_cols=96  Identities=15%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .+.-|||||||+|.++..+...   +-..+|+|+|+.|++.|.+.-    ++  -.++.+|.-+-+|.-     ++.||-
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~DMG~Glpfr-----pGtFDg  115 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCDMGEGLPFR-----PGTFDG  115 (270)
T ss_pred             CCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeeecCCCCCCC-----CCccce
Confidence            3678999999999998877652   457899999999999998722    22  256777776555543     699998


Q ss_pred             EEEc--------CC------ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVD--------AE------KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id--------~~------~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +++-        +.      ......||..+..+   |++|+.-|+.
T Consensus       116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~---l~rg~raV~Q  159 (270)
T KOG1541|consen  116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSC---LKRGARAVLQ  159 (270)
T ss_pred             EEEeeeeeeecccCccccChHHHHHHHhhhhhhh---hccCceeEEE
Confidence            8742        22      12234467767777   8888887774

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.65  E-value=1.9e-07  Score=85.54  Aligned_cols=115  Identities=23%  Similarity=0.243  Sum_probs=72.7

Q ss_pred             CCCCCccCHHHHHHHHHHHh-hc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE
Q 023411           97 RGSQMQVSPDQAQLLAMLVQ-IL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (282)
Q Consensus        97 ~~~~~~~~~~~~~ll~~l~~-~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (282)
                      +.++.++++.+.+.+...+. ..  .+..|||+.||.|.+++.+|...   .+|+|||+++++++.|++|++.+++.+ +
T Consensus       171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n-~  246 (352)
T PF05958_consen  171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDN-V  246 (352)
T ss_dssp             TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--S-E
T ss_pred             CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCc-c
Confidence            45677788877766666543 21  23389999999999999999864   589999999999999999999999975 9


Q ss_pred             EEEEcchhhHHHHHHh---------C-CCCCceeEEEEcCCccccH-HHHHHH
Q 023411          174 KIKHGLAADSLKALIL---------N-GEASSYDFAFVDAEKRMYQ-EYFELL  215 (282)
Q Consensus       174 ~~~~gd~~~~l~~l~~---------~-~~~~~fDlV~id~~~~~~~-~~l~~~  215 (282)
                      +|+.+++.+....+..         . .....+|+|++|++..... ...+.+
T Consensus       247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            9999888654332210         0 0123689999999854433 344444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.64  E-value=8.3e-07  Score=77.54  Aligned_cols=123  Identities=16%  Similarity=0.241  Sum_probs=94.1

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      +..+.....+-+||||.||.|...+-.....|. ..++...|.++..++..++.++..|+.+.++|.++|+.+... +..
T Consensus       127 i~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~  205 (311)
T PF12147_consen  127 IARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAA  205 (311)
T ss_pred             HHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhc
Confidence            334444457889999999999999888888774 368999999999999999999999999977999999987522 111


Q ss_pred             CCCCCceeEEEEcCCcccc------HHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411          190 NGEASSYDFAFVDAEKRMY------QEYFELLLQLLLQIRVGGIIVIDNVLWHGKV  239 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~------~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~  239 (282)
                      -  ....+++++.+..+-+      ...+.-+...   +.|||+||..+-=|+-..
T Consensus       206 l--~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~a---l~pgG~lIyTgQPwHPQl  256 (311)
T PF12147_consen  206 L--DPAPTLAIVSGLYELFPDNDLVRRSLAGLARA---LEPGGYLIYTGQPWHPQL  256 (311)
T ss_pred             c--CCCCCEEEEecchhhCCcHHHHHHHHHHHHHH---hCCCcEEEEcCCCCCcch
Confidence            0  4567999988764432      2234445555   999999999887777653

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=7.7e-07  Score=77.31  Aligned_cols=105  Identities=15%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      +..+.....-+...+...+++.|||||+|.|..|..+++..   .+|++||+++.+++..++.+.   ..++++++++|+
T Consensus        12 FL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~Da   85 (259)
T COG0030          12 FLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDA   85 (259)
T ss_pred             cccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCch
Confidence            34455555555556666678899999999999999999874   589999999999999888876   345799999999


Q ss_pred             hhHH-HHHHhCCCCCceeEEEEcCCccccHHHHHHHHH
Q 023411          181 ADSL-KALILNGEASSYDFAFVDAEKRMYQEYFELLLQ  217 (282)
Q Consensus       181 ~~~l-~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~  217 (282)
                      .... +.+      ..++.|+.+-+..-....+..+..
T Consensus        86 Lk~d~~~l------~~~~~vVaNlPY~Isspii~kll~  117 (259)
T COG0030          86 LKFDFPSL------AQPYKVVANLPYNISSPILFKLLE  117 (259)
T ss_pred             hcCcchhh------cCCCEEEEcCCCcccHHHHHHHHh
Confidence            8752 221      167889988876655554444433

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.61  E-value=1.5e-07  Score=83.18  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=76.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ..++.|||+|||+|..+...+.+-  ..+|++||.| +|.+.|++.++.+.+.+|++++.|...|+  .+     .++.|
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL-----PEk~D  245 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL-----PEKVD  245 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC-----chhcc
Confidence            357899999999999999988864  3689999997 69999999999999999999999998764  22     58899


Q ss_pred             EEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|+...-.-.  ....++......++|+|.|.++-
T Consensus       246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             EEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            9997643110  11122222222345999998753

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.60  E-value=2.9e-07  Score=83.32  Aligned_cols=107  Identities=10%  Similarity=0.121  Sum_probs=69.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---------CCCcEEEEEcchhhH-HHHHH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------VSHKVKIKHGLAADS-LKALI  188 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---------~~~~v~~~~gd~~~~-l~~l~  188 (282)
                      ++.+|||+|||-|+...-+..+-  -.+++|+|++++.++.|+++++...         ..-...++.+|.... +....
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            66799999999888776666642  3799999999999999999994321         112467888887542 22111


Q ss_pred             hCCCCCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          189 LNGEASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .. ...+||+|=|--..+       ....+++.+...   |+|||+++..
T Consensus       140 ~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~---Lk~GG~FIgT  185 (331)
T PF03291_consen  140 PP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSL---LKPGGYFIGT  185 (331)
T ss_dssp             SS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHT---EEEEEEEEEE
T ss_pred             cc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHh---cCCCCEEEEE
Confidence            11 135999998764422       234466677676   9999999874

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.56  E-value=2.3e-07  Score=73.09  Aligned_cols=112  Identities=18%  Similarity=0.265  Sum_probs=77.3

Q ss_pred             EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC------------ccccHHHHH
Q 023411          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFE  213 (282)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~------------~~~~~~~l~  213 (282)
                      +|+++|+.+++++.++++++..++.+++++++.+-......+.    .+++|+++.+-+            .+.....++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP----EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            6899999999999999999999999999999987655443331    248999876422            122445677


Q ss_pred             HHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEee
Q 023411          214 LLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP  271 (282)
Q Consensus       214 ~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  271 (282)
                      .+.++   |+|||+|++  +.++|.    +.+.+...++.+|.+.+.. ..|.+....
T Consensus        77 ~al~l---L~~gG~i~i--v~Y~GH----~gG~eE~~av~~~~~~L~~-~~~~V~~~~  124 (140)
T PF06962_consen   77 AALEL---LKPGGIITI--VVYPGH----PGGKEESEAVEEFLASLDQ-KEFNVLKYQ  124 (140)
T ss_dssp             HHHHH---EEEEEEEEE--EE--ST----CHHHHHHHHHHHHHHTS-T-TTEEEEEEE
T ss_pred             HHHHh---hccCCEEEE--EEeCCC----CCCHHHHHHHHHHHHhCCc-ceEEEEEEE
Confidence            77777   999999999  888887    2344667899999988743 367766543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.56  E-value=7.5e-07  Score=69.77  Aligned_cols=93  Identities=11%  Similarity=0.052  Sum_probs=66.8

Q ss_pred             HHHHHHhhcCCCEEEEEcccccH-HHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      ++.......++.+|+|||||+|. .+..+++.   +..|+++|+++..++.++++        .++++.+|..+.-..+ 
T Consensus         7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~-   74 (134)
T PRK04148          7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI-   74 (134)
T ss_pred             HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH-
Confidence            34443333456789999999997 66667753   57999999999988777654        2688999988754444 


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHh
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQL  218 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~  218 (282)
                          -+.+|+|+.--++.+....+-.+.+-
T Consensus        75 ----y~~a~liysirpp~el~~~~~~la~~  100 (134)
T PRK04148         75 ----YKNAKLIYSIRPPRDLQPFILELAKK  100 (134)
T ss_pred             ----HhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence                37899999887766666655555543

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=4.4e-07  Score=71.14  Aligned_cols=91  Identities=16%  Similarity=0.264  Sum_probs=69.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ..++.++|+|||+|..+..++  ++....|+|+|++|++++.+.+|.++..+.  +.+.++|+.+....      .+.||
T Consensus        47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~------~g~fD  116 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK------GGIFD  116 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc------CCeEe
Confidence            367899999999999884443  454568999999999999999999988775  69999999875443      48999


Q ss_pred             EEEEcCCc-----cccHHHHHHHHHh
Q 023411          198 FAFVDAEK-----RMYQEYFELLLQL  218 (282)
Q Consensus       198 lV~id~~~-----~~~~~~l~~~~~~  218 (282)
                      .++++.+.     ..-.++.....++
T Consensus       117 taviNppFGTk~~~aDm~fv~~al~~  142 (185)
T KOG3420|consen  117 TAVINPPFGTKKKGADMEFVSAALKV  142 (185)
T ss_pred             eEEecCCCCcccccccHHHHHHHHHH
Confidence            99999762     2234455555554

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=5.2e-07  Score=84.08  Aligned_cols=127  Identities=19%  Similarity=0.241  Sum_probs=94.7

Q ss_pred             CCCCCccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411           97 RGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (282)
Q Consensus        97 ~~~~~~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (282)
                      +++.++.+...++.+...+.    ....+.++|+.||||.+++.+++..   .+|+|||++++.++.|+.+.+.+|+++ 
T Consensus       357 p~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisN-  432 (534)
T KOG2187|consen  357 PGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISN-  432 (534)
T ss_pred             CchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccc-
Confidence            34566777777777777665    3456789999999999999999875   589999999999999999999999986 


Q ss_pred             EEEEEcchhhHHHHHHhCCCCCcee-EEEEcCCcc-ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          173 VKIKHGLAADSLKALILNGEASSYD-FAFVDAEKR-MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fD-lV~id~~~~-~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+|++|.+.+..+.+.... .++=+ ++++|.+.. -...+++.+...   -++--++.+.
T Consensus       433 a~Fi~gqaE~~~~sl~~~~-~~~~~~v~iiDPpR~Glh~~~ik~l~~~---~~~~rlvyvS  489 (534)
T KOG2187|consen  433 ATFIVGQAEDLFPSLLTPC-CDSETLVAIIDPPRKGLHMKVIKALRAY---KNPRRLVYVS  489 (534)
T ss_pred             eeeeecchhhccchhcccC-CCCCceEEEECCCcccccHHHHHHHHhc---cCccceEEEE
Confidence            9999998888777765332 12345 667887743 344566666665   4455555554

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.52  E-value=5.9e-07  Score=77.46  Aligned_cols=87  Identities=18%  Similarity=0.163  Sum_probs=71.1

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      .-+..-+...+++.|||||.|||..|..+.+.   +.+|+++|+++.++....+.++....+++.++++||.....    
T Consensus        48 ~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d----  120 (315)
T KOG0820|consen   48 DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD----  120 (315)
T ss_pred             HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC----
Confidence            33444455678889999999999999999986   47999999999999999999987777789999999997641    


Q ss_pred             hCCCCCceeEEEEcCCcc
Q 023411          189 LNGEASSYDFAFVDAEKR  206 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~  206 (282)
                          ...||.++.+-+..
T Consensus       121 ----~P~fd~cVsNlPyq  134 (315)
T KOG0820|consen  121 ----LPRFDGCVSNLPYQ  134 (315)
T ss_pred             ----CcccceeeccCCcc
Confidence                36789998765543

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.49  E-value=8e-07  Score=75.25  Aligned_cols=98  Identities=23%  Similarity=0.412  Sum_probs=82.1

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc-eeE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS-YDF  198 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~-fDl  198 (282)
                      +++++|||+|.|.-++-+|-..| +.+|+-+|.....+...++...+.++++ ++++++.+.+..+.       .. ||+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~-------~~~~D~  138 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQE-------KKQYDV  138 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccc-------cccCcE
Confidence            68999999999999999997666 6779999999999999999999999985 99999999765432       23 999


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |.+-+... .....+.+.++   +++||.+++
T Consensus       139 vtsRAva~-L~~l~e~~~pl---lk~~g~~~~  166 (215)
T COG0357         139 VTSRAVAS-LNVLLELCLPL---LKVGGGFLA  166 (215)
T ss_pred             EEeehccc-hHHHHHHHHHh---cccCCcchh
Confidence            99877643 45678889999   999988765

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.49  E-value=5.4e-07  Score=77.68  Aligned_cols=148  Identities=14%  Similarity=0.111  Sum_probs=92.7

Q ss_pred             CCCCccCHHHHHHHHHHH-----hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411           98 GSQMQVSPDQAQLLAMLV-----QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  172 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~-----~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (282)
                      ++.+..+.++..-+....     ......++||||+|.|..|..++..+.   +|++.|.|+.|..    ++++.|.   
T Consensus        68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~---  137 (265)
T PF05219_consen   68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF---  137 (265)
T ss_pred             CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC---
Confidence            444556666654444433     122567899999999999999999875   7999999998854    3444443   


Q ss_pred             EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCC-------CC-cccC
Q 023411          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLW-------HG-KVAD  241 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~-------~g-~~~~  241 (282)
                       +++.  ..++ .+.     +.+||+|-|-+....   ....++.+++.   |+|+|++++.=|+.       ++ .-..
T Consensus       138 -~vl~--~~~w-~~~-----~~~fDvIscLNvLDRc~~P~~LL~~i~~~---l~p~G~lilAvVlP~~pyVE~~~g~~~~  205 (265)
T PF05219_consen  138 -TVLD--IDDW-QQT-----DFKFDVISCLNVLDRCDRPLTLLRDIRRA---LKPNGRLILAVVLPFRPYVEFGGGKSNR  205 (265)
T ss_pred             -eEEe--hhhh-hcc-----CCceEEEeehhhhhccCCHHHHHHHHHHH---hCCCCEEEEEEEecccccEEcCCCCCCC
Confidence             3332  2222 211     468999998776443   44456666666   99999999986651       11 1111


Q ss_pred             CcC-----CChhhHHHHHHHHHhhhCCCeEEE
Q 023411          242 QMV-----NDAKTISIRNFNKNLMEDERVSIS  268 (282)
Q Consensus       242 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  268 (282)
                      |..     +..-...+..|. .+.+..+|++.
T Consensus       206 P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~  236 (265)
T PF05219_consen  206 PSELLPVKGATFEEQVSSLV-NVFEPAGFEVE  236 (265)
T ss_pred             chhhcCCCCCcHHHHHHHHH-HHHHhcCCEEE
Confidence            211     111124566777 56667788775

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.48  E-value=1.7e-07  Score=76.29  Aligned_cols=78  Identities=12%  Similarity=0.047  Sum_probs=58.3

Q ss_pred             EEEecCccHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc---cccHHHHHHHHHhhcCC
Q 023411          148 VACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLLLQI  222 (282)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~L  222 (282)
                      +|+|+|++|++.|+++.+..  +..++++++++|+.+. +..     +++||+|++....   .+....++++.++   |
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~~-----~~~fD~v~~~~~l~~~~d~~~~l~ei~rv---L   71 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PFD-----DCEFDAVTMGYGLRNVVDRLRAMKEMYRV---L   71 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CCC-----CCCeeEEEecchhhcCCCHHHHHHHHHHH---c
Confidence            48999999999998776532  2234699999999754 321     5789999987553   3456677777777   9


Q ss_pred             CCCcEEEEeCCC
Q 023411          223 RVGGIIVIDNVL  234 (282)
Q Consensus       223 kpgG~lv~dd~~  234 (282)
                      ||||.+++.+..
T Consensus        72 kpGG~l~i~d~~   83 (160)
T PLN02232         72 KPGSRVSILDFN   83 (160)
T ss_pred             CcCeEEEEEECC
Confidence            999999887664

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.42  E-value=1.5e-06  Score=76.33  Aligned_cols=103  Identities=19%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             CCEEEEEccccc-HHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHH-HhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          120 AQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       120 ~~~VLEIG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      +++|+=||||.= ..++.+++....++.|+++|+++++.+.+++.++ ..|+..+++|+.+|..+...++      ..||
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl------~~~D  194 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL------KEYD  194 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------S
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc------ccCC
Confidence            469999999954 4556666543336789999999999999999888 6678889999999997654332      6899


Q ss_pred             EEEEcCCcc----ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKR----MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~----~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +||+-+-..    .-...++.+.+.   ++||..|++-
T Consensus       195 vV~lAalVg~~~e~K~~Il~~l~~~---m~~ga~l~~R  229 (276)
T PF03059_consen  195 VVFLAALVGMDAEPKEEILEHLAKH---MAPGARLVVR  229 (276)
T ss_dssp             EEEE-TT-S----SHHHHHHHHHHH---S-TTSEEEEE
T ss_pred             EEEEhhhcccccchHHHHHHHHHhh---CCCCcEEEEe
Confidence            999976644    667788999998   9999999986

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.42  E-value=4.2e-07  Score=78.71  Aligned_cols=134  Identities=22%  Similarity=0.319  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC---C-CCCEEEEEecCc--------------------------cHHHHHHHHHHHh
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL---P-ESGCLVACERDA--------------------------RSLEVAKKYYERA  167 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~---~-~~~~v~~iD~s~--------------------------~~~~~a~~~~~~~  167 (282)
                      .-+..|+|+||..|.+++.++..+   . .+-+++++|--+                          ...+..++++...
T Consensus        73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~  152 (248)
T PF05711_consen   73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY  152 (248)
T ss_dssp             TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred             CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence            456799999999999887765432   2 234688888321                          1244555666655


Q ss_pred             CC-CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC-ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCC
Q 023411          168 GV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVN  245 (282)
Q Consensus       168 g~-~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~  245 (282)
                      |+ .++++++.|.+.+.++..+    .+++-++.+|++ .+.....++.+.+.   |.|||+|++||..++|.       
T Consensus       153 gl~~~~v~~vkG~F~dTLp~~p----~~~IAll~lD~DlYesT~~aLe~lypr---l~~GGiIi~DDY~~~gc-------  218 (248)
T PF05711_consen  153 GLLDDNVRFVKGWFPDTLPDAP----IERIALLHLDCDLYESTKDALEFLYPR---LSPGGIIIFDDYGHPGC-------  218 (248)
T ss_dssp             TTSSTTEEEEES-HHHHCCC-T----T--EEEEEE---SHHHHHHHHHHHGGG---EEEEEEEEESSTTTHHH-------
T ss_pred             CCCcccEEEECCcchhhhccCC----CccEEEEEEeccchHHHHHHHHHHHhh---cCCCeEEEEeCCCChHH-------
Confidence            64 4679999999988877543    468888889987 45566678888887   99999999999877443       


Q ss_pred             ChhhHHHHHHHHHhhhCCCeEEEEeec
Q 023411          246 DAKTISIRNFNKNLMEDERVSISMVPI  272 (282)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~lp~  272 (282)
                         +.|+.+|.+..    ++...+.++
T Consensus       219 ---r~AvdeF~~~~----gi~~~l~~i  238 (248)
T PF05711_consen  219 ---RKAVDEFRAEH----GITDPLHPI  238 (248)
T ss_dssp             ---HHHHHHHHHHT----T--S--EE-
T ss_pred             ---HHHHHHHHHHc----CCCCccEEe
Confidence               56788886543    344445555

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK10742 putative methyltransferase; Provisional

Probab=98.41  E-value=2.1e-06  Score=74.01  Aligned_cols=90  Identities=16%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             HHHHHHHhhcCCC--EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh------C--CCCcEEEEEc
Q 023411          109 QLLAMLVQILGAQ--RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------G--VSHKVKIKHG  178 (282)
Q Consensus       109 ~ll~~l~~~~~~~--~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g--~~~~v~~~~g  178 (282)
                      +.+...+..+++.  +|||.-+|+|..++.++..   +++|+++|.++......+++++..      +  +..+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            3466666666666  9999999999999999985   678999999999999999999885      2  2257999999


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCcc
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKR  206 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~  206 (282)
                      |+.+++...     .+.||+||+|+..+
T Consensus       153 da~~~L~~~-----~~~fDVVYlDPMfp  175 (250)
T PRK10742        153 SSLTALTDI-----TPRPQVVYLDPMFP  175 (250)
T ss_pred             cHHHHHhhC-----CCCCcEEEECCCCC
Confidence            999988764     46899999997733

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.38  E-value=5.6e-06  Score=69.33  Aligned_cols=101  Identities=20%  Similarity=0.185  Sum_probs=72.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--HHHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~l~~~~~~~~  195 (282)
                      .++..|+|+|+..|+|+..+++.++++++|++||+.|--            .-..|.++++|+.+  ....+...-....
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~  111 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAP  111 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCCC
Confidence            467899999999999999999999877889999998742            12239999999865  3333333222456


Q ss_pred             eeEEEEcCCc--------ccc------HHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAEK--------RMY------QEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~~--------~~~------~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|+|++|..+        ++.      ...++.+...   |+|||.+++...
T Consensus       112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~v---L~~~G~fv~K~f  160 (205)
T COG0293         112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEV---LKPGGSFVAKVF  160 (205)
T ss_pred             cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHe---eCCCCeEEEEEE
Confidence            7999999764        221      1234444555   999999999644

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.36  E-value=6.3e-06  Score=73.91  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH--HHh---C-CCCcEEEEEcchhhHHHHHHhCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY--ERA---G-VSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~--~~~---g-~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      ...++||-+|.|.|.-...+.+ .|.-.+++-+|++|++++.++.+.  ...   . .+.|++++..|+..++...    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence            4677999999999998888887 454589999999999999998432  221   1 2368999999999998776    


Q ss_pred             CCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          192 EASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                       .+.||+|++|-..+.        ..++...+.+.   |+++|.+|++.
T Consensus       363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~---l~e~Gl~VvQa  407 (508)
T COG4262         363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRH---LAETGLMVVQA  407 (508)
T ss_pred             -cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHh---cCcCceEEEec
Confidence             579999999855322        34466666777   99999999974

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.35  E-value=3.9e-06  Score=83.54  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             CccCHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHC---CC---------------------------------
Q 023411          101 MQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVL---PE---------------------------------  143 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~---~~---------------------------------  143 (282)
                      ..+.+..+..+..++.. .+...++|-+||+|.+.+..+...   ++                                 
T Consensus       171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~  250 (702)
T PRK11783        171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA  250 (702)
T ss_pred             CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence            34666677666677665 567899999999999998876531   11                                 


Q ss_pred             -----CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc
Q 023411          144 -----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK  205 (282)
Q Consensus       144 -----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~  205 (282)
                           ..+++|+|+++.+++.|++|+..+|+.+++++.++|+.+.....    ..++||+|+++++.
T Consensus       251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPY  313 (702)
T PRK11783        251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPY  313 (702)
T ss_pred             cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCC
Confidence                 23799999999999999999999999988999999997653211    12579999999773

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.32  E-value=3.2e-06  Score=71.49  Aligned_cols=75  Identities=17%  Similarity=0.280  Sum_probs=57.9

Q ss_pred             EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEc
Q 023411          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD  202 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id  202 (282)
                      |.||||-.|+..+++++... ..+++++|+++..++.|+++++..|+.++++++.+|..+.++.      .+..|.|++.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------~e~~d~ivIA   73 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------GEDVDTIVIA   73 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------GG---EEEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------CCCCCEEEEe
Confidence            68999999999999998643 4589999999999999999999999999999999999887652      2337888775


Q ss_pred             CC
Q 023411          203 AE  204 (282)
Q Consensus       203 ~~  204 (282)
                      +-
T Consensus        74 GM   75 (205)
T PF04816_consen   74 GM   75 (205)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.31  E-value=1.6e-06  Score=71.76  Aligned_cols=98  Identities=18%  Similarity=0.231  Sum_probs=62.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EAS  194 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~~  194 (282)
                      ++.+|||+||+.|+++.++++...+.++|+|+|+.+.           ... ..+.++++|..+.  ...+....  ...
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence            4579999999999999999998744689999999876           112 2467777776542  12221111  126


Q ss_pred             ceeEEEEcCCc--------cc------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEK--------RM------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~--------~~------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++|+|++|...        ..      ....+..+..+   |+|||.+|+.
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~---L~~gG~~v~K  138 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALEL---LKPGGTFVIK  138 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHH---HCTTEEEEEE
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhh---hcCCCEEEEE
Confidence            99999999831        11      12234444566   9999988884

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.31  E-value=4e-06  Score=72.01  Aligned_cols=94  Identities=12%  Similarity=0.123  Sum_probs=57.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE-EEEcchhhH-HHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADS-LKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~-~~~gd~~~~-l~~l~~~~~~~~  195 (282)
                      .++++|||+|||+|.++..+++. + ..+|+++|+++.++..   .+..   ..++. +-..|+... .....  .+-..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~---~~~v~~~~~~ni~~~~~~~~~--~d~~~  143 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQ---DERVKVLERTNIRYVTPADIF--PDFAT  143 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhc---CCCeeEeecCCcccCCHhHcC--CCcee
Confidence            35679999999999999999986 2 3689999999977754   1111   12232 222233211 11110  01246


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|++|+....     .+..+.++   |+| |.+++
T Consensus       144 ~DvsfiS~~~-----~l~~i~~~---l~~-~~~~~  169 (228)
T TIGR00478       144 FDVSFISLIS-----ILPELDLL---LNP-NDLTL  169 (228)
T ss_pred             eeEEEeehHh-----HHHHHHHH---hCc-CeEEE
Confidence            7777764432     46677777   999 66554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.31  E-value=4.2e-06  Score=75.33  Aligned_cols=125  Identities=16%  Similarity=0.190  Sum_probs=83.4

Q ss_pred             CCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC------CCCCEEEEEecCccHHHHHHHHHHHhCCCCc
Q 023411           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL------PESGCLVACERDARSLEVAKKYYERAGVSHK  172 (282)
Q Consensus        99 ~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~  172 (282)
                      +...+......++..++...++.+|+|-+||+|.+...+.+.+      ....+++|+|+++.....++-++...+....
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~  105 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS  105 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence            3455677888899999988888899999999999998888753      1257899999999999999988876665443


Q ss_pred             -EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc------------------------cHHHHHHHHHhhcCCCCCcE
Q 023411          173 -VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM------------------------YQEYFELLLQLLLQIRVGGI  227 (282)
Q Consensus       173 -v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~------------------------~~~~l~~~~~~~~~LkpgG~  227 (282)
                       ..+.++|........    ....||+|+.+++...                        ...++..+...   |++||.
T Consensus       106 ~~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~---Lk~~G~  178 (311)
T PF02384_consen  106 NINIIQGDSLENDKFI----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL---LKPGGR  178 (311)
T ss_dssp             GCEEEES-TTTSHSCT----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT---EEEEEE
T ss_pred             cccccccccccccccc----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh---cccccc
Confidence             468888876542211    1368999998755111                        11356667777   999997


Q ss_pred             EEE
Q 023411          228 IVI  230 (282)
Q Consensus       228 lv~  230 (282)
                      +++
T Consensus       179 ~~~  181 (311)
T PF02384_consen  179 AAI  181 (311)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.30  E-value=3.4e-06  Score=74.84  Aligned_cols=106  Identities=17%  Similarity=0.196  Sum_probs=70.9

Q ss_pred             CCCEEEEEcccccHHHHH----HHHHCCC---CCEEEEEecCccHHHHHHHHH------------------HH-------
Q 023411          119 GAQRCIEVGVYTGYSSLA----IALVLPE---SGCLVACERDARSLEVAKKYY------------------ER-------  166 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~----la~~~~~---~~~v~~iD~s~~~~~~a~~~~------------------~~-------  166 (282)
                      ++-+|+-.||++|--.-.    +.+..+.   +.+|+|+|+|+.+++.|++..                  ..       
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            346999999999974333    3332221   357999999999999998651                  11       


Q ss_pred             -----hCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          167 -----AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       167 -----~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                           ..+...|+|.+.|..+.....     .+.||+|||-+..     +.....++.+.+.   |+|||+|++..
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~-----~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~---L~pgG~L~lG~  262 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAV-----PGPFDAIFCRNVMIYFDKTTQERILRRFVPL---LKPDGLLFAGH  262 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCcc-----CCCcceeeHhhHHhcCCHHHHHHHHHHHHHH---hCCCcEEEEeC
Confidence                 012356778777776521111     3789999996552     3345567777777   99999998854

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.27  E-value=4.4e-06  Score=73.77  Aligned_cols=108  Identities=12%  Similarity=0.105  Sum_probs=73.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-----cEEEEEcchhh-HHHHHHhCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAAD-SLKALILNG  191 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~-~l~~l~~~~  191 (282)
                      .+.+.++++|||-|+..+..-.+-  -+.++++||.+..++.|+++++......     .+.|+.+|... .+..+... 
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~-  192 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF-  192 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC-
Confidence            467789999999999887766542  3689999999999999999887654332     37899998754 23333221 


Q ss_pred             CCCceeEEEEcCC----c---cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          192 EASSYDFAFVDAE----K---RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       192 ~~~~fDlV~id~~----~---~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+.+||+|=+.-.    .   +...-.+..+.++   |+|||+++-.
T Consensus       193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~---LkpGG~FIgT  236 (389)
T KOG1975|consen  193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKC---LKPGGVFIGT  236 (389)
T ss_pred             CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhh---cCCCcEEEEe
Confidence            1234999955322    1   1223355666666   9999998863

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.27  E-value=8.7e-06  Score=68.84  Aligned_cols=115  Identities=20%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHH-------HhCC-CCcEEEEEcchhhH--
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-------RAGV-SHKVKIKHGLAADS--  183 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-------~~g~-~~~v~~~~gd~~~~--  183 (282)
                      .+...+.+..+|||||.|...+..+...+ -.+.+|||+.+...+.|+...+       ..|. ..++++.++|..+.  
T Consensus        37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~  115 (205)
T PF08123_consen   37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF  115 (205)
T ss_dssp             HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred             HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence            34455678999999999999888776553 3469999999998877765433       3343 35689999998763  


Q ss_pred             HHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ...+     -..-|+||+++..  +.....+......   ||+|..+|.-.-+.+.
T Consensus       116 ~~~~-----~s~AdvVf~Nn~~F~~~l~~~L~~~~~~---lk~G~~IIs~~~~~~~  163 (205)
T PF08123_consen  116 VKDI-----WSDADVVFVNNTCFDPDLNLALAELLLE---LKPGARIISTKPFCPR  163 (205)
T ss_dssp             HHHH-----GHC-SEEEE--TTT-HHHHHHHHHHHTT---S-TT-EEEESS-SS-T
T ss_pred             Hhhh-----hcCCCEEEEeccccCHHHHHHHHHHHhc---CCCCCEEEECCCcCCC
Confidence            2222     2457999998762  2333333333344   8999888875444443

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.26  E-value=1.2e-05  Score=71.67  Aligned_cols=84  Identities=24%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++..++|.-+|.|+.|..+++.++ .++|+|+|.++++++.+++.++..  .+++++++++..+....+...+ ..++
T Consensus        18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~-~~~v   93 (305)
T TIGR00006        18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELL-VTKI   93 (305)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcC-CCcc
Confidence            45677999999999999999999987 499999999999999999988753  4689999999987765543322 3679


Q ss_pred             eEEEEcCC
Q 023411          197 DFAFVDAE  204 (282)
Q Consensus       197 DlV~id~~  204 (282)
                      |.|+.|-+
T Consensus        94 DgIl~DLG  101 (305)
T TIGR00006        94 DGILVDLG  101 (305)
T ss_pred             cEEEEecc
Confidence            99998754

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=98.24  E-value=3.7e-05  Score=63.22  Aligned_cols=147  Identities=16%  Similarity=0.177  Sum_probs=96.5

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      -+|...-.++.++-..+|..|+|+|+-.|++++++|..+   +...+|+++|++-..+.-+...      ..+|.|++|+
T Consensus        53 k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egs  126 (237)
T COG3510          53 KSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGS  126 (237)
T ss_pred             CCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCC
Confidence            345555566677777889999999999999999988754   2236899999986654332221      2469999999


Q ss_pred             hhhH--HHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccC--Cc-CCChhhHHH
Q 023411          180 AADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD--QM-VNDAKTISI  252 (282)
Q Consensus       180 ~~~~--l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~--~~-~~~~~~~~~  252 (282)
                      ..+.  ..+.......-+-=+|+.|..  ..+....++.+.++   |.-|-++|+.|...++....  |- .+.....++
T Consensus       127 s~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pl---lsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AV  203 (237)
T COG3510         127 STDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPL---LSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAV  203 (237)
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhH---hhcCceEEEecccccCCCCcccchhcCCChHHHH
Confidence            8662  222211111122234455554  34455556666677   99999999999887776532  22 245567889


Q ss_pred             HHHHHH
Q 023411          253 RNFNKN  258 (282)
Q Consensus       253 ~~~~~~  258 (282)
                      +.|++.
T Consensus       204 e~ylr~  209 (237)
T COG3510         204 EAYLRE  209 (237)
T ss_pred             HHHHHh
Confidence            998864

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.23  E-value=1.8e-05  Score=76.45  Aligned_cols=84  Identities=13%  Similarity=0.036  Sum_probs=59.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCC-------CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      ...+|+|.|||+|.+...++..++.       ...++++|+++..+..++.++...+. ..+.+..+|..........+ 
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~-  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIES-  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccc-
Confidence            3458999999999999998887641       24689999999999999999887652 23566666654321111001 


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                      ..+.||+|+.+++
T Consensus       109 ~~~~fD~IIgNPP  121 (524)
T TIGR02987       109 YLDLFDIVITNPP  121 (524)
T ss_pred             ccCcccEEEeCCC
Confidence            1368999998866

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.19  E-value=2.2e-05  Score=71.54  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=93.4

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC---CC----------------------------C-----
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---ES----------------------------G-----  145 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~---~~----------------------------~-----  145 (282)
                      .+.+..+..|..++.-.+...++|-=||+|.+.+..|...+   |+                            +     
T Consensus       174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~  253 (381)
T COG0116         174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE  253 (381)
T ss_pred             CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence            46667777777777777888999999999999988776542   11                            1     


Q ss_pred             --EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----------ccHHHH
Q 023411          146 --CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------MYQEYF  212 (282)
Q Consensus       146 --~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----------~~~~~l  212 (282)
                        .++|+|+++.+++.|+.|...+|+.+.|+|.++|+.+..+.      .+.+|+|+++++..           -|..+.
T Consensus       254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg  327 (381)
T COG0116         254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYGERLGSEALVAKLYREFG  327 (381)
T ss_pred             cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence              37899999999999999999999999999999999765331      16899999998732           245555


Q ss_pred             HHHHHhhcCCCCCcEEEE
Q 023411          213 ELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       213 ~~~~~~~~~LkpgG~lv~  230 (282)
                      +.+++.   ++..+..|+
T Consensus       328 ~~lk~~---~~~ws~~v~  342 (381)
T COG0116         328 RTLKRL---LAGWSRYVF  342 (381)
T ss_pred             HHHHHH---hcCCceEEE
Confidence            666666   777777776

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.18  E-value=3.4e-05  Score=69.49  Aligned_cols=109  Identities=14%  Similarity=0.014  Sum_probs=75.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCC---CCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCCCCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ++..++|+|||+|.-+..+++++.+   ..+++++|+|.++++.+.+.+.....+. .+.-++||..+.+..+.......
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            4558999999999999888887742   3679999999999999999988333332 24448999877654442210023


Q ss_pred             ceeEEEEcC-C-----ccccHHHHHHHHH-hhcCCCCCcEEEE
Q 023411          195 SYDFAFVDA-E-----KRMYQEYFELLLQ-LLLQIRVGGIIVI  230 (282)
Q Consensus       195 ~fDlV~id~-~-----~~~~~~~l~~~~~-~~~~LkpgG~lv~  230 (282)
                      ...+++.-+ .     +.....++..+.+ .   |+|||.+++
T Consensus       156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~---l~~~d~lLi  195 (319)
T TIGR03439       156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATA---LSPSDSFLI  195 (319)
T ss_pred             CccEEEEeCccccCCCHHHHHHHHHHHHHhh---CCCCCEEEE
Confidence            345655433 2     3334556777776 6   999998887

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.16  E-value=4.3e-06  Score=68.46  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=77.6

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +.+.|+|+|+|..+...+++.   -+|++||.+|...+.|++|+.-.|.. +++++.||+.+.-        -+..|+|+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~--------fe~ADvvi  101 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD--------FENADVVI  101 (252)
T ss_pred             hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc--------ccccceeH
Confidence            589999999999998888763   58999999999999999999777765 4999999998652        25678888


Q ss_pred             EcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          201 VDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       201 id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |..-     .+.....++.+.+.   ||..+.++-..+.
T Consensus       102 cEmlDTaLi~E~qVpV~n~vleF---Lr~d~tiiPq~v~  137 (252)
T COG4076         102 CEMLDTALIEEKQVPVINAVLEF---LRYDPTIIPQEVR  137 (252)
T ss_pred             HHHhhHHhhcccccHHHHHHHHH---hhcCCccccHHHh
Confidence            7432     23344566777777   8988888766553

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.15  E-value=6.9e-06  Score=65.07  Aligned_cols=59  Identities=22%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      .++|||||.|.++.++++..+ .++++++|+++++.+.++++++.+++.+ +++++....+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence            489999999999999998875 5799999999999999999999888764 8888766543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.15  E-value=9.9e-06  Score=71.08  Aligned_cols=105  Identities=15%  Similarity=0.223  Sum_probs=72.0

Q ss_pred             CCCEEEEEcccccH----HHHHHHHHCCC----CCEEEEEecCccHHHHHHHHHHH-----hCC----------------
Q 023411          119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER-----AGV----------------  169 (282)
Q Consensus       119 ~~~~VLEIG~G~G~----~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~-----~g~----------------  169 (282)
                      .+-+|.-+||++|-    .+..+.+.++.    ..+|+|+|+|...++.|++-.=.     .++                
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            36799999999995    34455555542    46899999999999988753211     111                


Q ss_pred             -------CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       170 -------~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                             ...|+|...|..+..+ .     .+.||+|||-++     .+.....++.+...   |+|||+|++..
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~-----~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~---L~~gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-F-----LGKFDLIFCRNVLIYFDEETQERILRRFADS---LKPGGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-c-----cCCCCEEEEcceEEeeCHHHHHHHHHHHHHH---hCCCCEEEEcc
Confidence                   1246666666654332 2     578999999776     23344567777777   99999999953

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.14  E-value=3.6e-05  Score=64.43  Aligned_cols=109  Identities=19%  Similarity=0.219  Sum_probs=81.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+||+||-|-|.....+-++-|  .+-+-||.+|+.+...+..-  ..-.++|.+..|...+.++.++    ++.||
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~----d~~FD  171 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP----DKHFD  171 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc----ccCcc
Confidence            6788999999999998887777644  45677999999876554432  1234678999999999888876    57799


Q ss_pred             EEEEcCCcccc---HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          198 FAFVDAEKRMY---QEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       198 lV~id~~~~~~---~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      =|+-|.-.+.+   ..+.+.+.++   |||+|++-+-|.+-.+
T Consensus       172 GI~yDTy~e~yEdl~~~hqh~~rL---LkP~gv~SyfNg~~~~  211 (271)
T KOG1709|consen  172 GIYYDTYSELYEDLRHFHQHVVRL---LKPEGVFSYFNGLGAD  211 (271)
T ss_pred             eeEeechhhHHHHHHHHHHHHhhh---cCCCceEEEecCcccc
Confidence            99999774444   4455555555   9999999876665433

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.14  E-value=9.4e-06  Score=74.05  Aligned_cols=110  Identities=18%  Similarity=0.285  Sum_probs=86.1

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||..+..|+=|.++|..+...|.|++-|.+...+...++++...|+.+ ..+...|..++.....    .++
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~----~~~  312 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF----PGS  312 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc----Ccc
Confidence            45678899999999999999999999877999999999999999999999999886 5666677765432221    358


Q ss_pred             eeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ||.|++|++...                         ..+.+.....+   +++||+||....
T Consensus       313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~l---v~~GGvLVYSTC  372 (460)
T KOG1122|consen  313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDL---VKAGGVLVYSTC  372 (460)
T ss_pred             cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhh---ccCCcEEEEEee
Confidence            999999976211                         22344455566   999999998755

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.11  E-value=2.2e-05  Score=62.40  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=59.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHHhC--CCCcEEEEEcchhhHHHHHHhCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+...|+|+|||.|+.+..++..+   ..+.+|++||.++...+.+.+..+..+  ...++++..++..+...       
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   96 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-------   96 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-------
Confidence            677899999999999999999833   236899999999999999999888877  44556776665543211       


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      ....++++--+.
T Consensus        97 ~~~~~~~vgLHa  108 (141)
T PF13679_consen   97 SDPPDILVGLHA  108 (141)
T ss_pred             cCCCeEEEEeec
Confidence            345566664333

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.09  E-value=2.1e-05  Score=69.20  Aligned_cols=134  Identities=14%  Similarity=0.102  Sum_probs=89.3

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      ...+++.....+...+...++..|||||+|.|.+|..+++..   .+++++|+++.+.+..++.+.   ...+++++++|
T Consensus        11 nFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D   84 (262)
T PF00398_consen   11 NFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGD   84 (262)
T ss_dssp             SEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-
T ss_pred             CeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecc
Confidence            345667777777777777788999999999999999999875   699999999999988888765   34579999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCC
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQ  242 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~  242 (282)
                      +.++......   ......|+.+-+..-....+..+......=+...++++..=.....++.|
T Consensus        85 ~l~~~~~~~~---~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~p  144 (262)
T PF00398_consen   85 FLKWDLYDLL---KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKP  144 (262)
T ss_dssp             TTTSCGGGHC---SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTST
T ss_pred             hhccccHHhh---cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCC
Confidence            9875221000   13445666665554444555555553111013356666544444444444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.08  E-value=3.4e-05  Score=65.23  Aligned_cols=106  Identities=15%  Similarity=0.113  Sum_probs=73.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .+.++.+||=+|+++|.....++...+++|.|++||.++...+..-...+   -..++--+.+|+.......  . --+.
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~---~R~NIiPIl~DAr~P~~Y~--~-lv~~  143 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK---KRPNIIPILEDARHPEKYR--M-LVEM  143 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH---HSTTEEEEES-TTSGGGGT--T-TS--
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc---cCCceeeeeccCCChHHhh--c-cccc
Confidence            34577899999999999999999998888999999999976544433333   2456888899986421110  0 1469


Q ss_pred             eeEEEEcCCccccHH-HHHHHHHhhcCCCCCcEEEE
Q 023411          196 YDFAFVDAEKRMYQE-YFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       196 fDlV~id~~~~~~~~-~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|+||.|-..++... +...+...   ||+||.+++
T Consensus       144 VDvI~~DVaQp~Qa~I~~~Na~~f---Lk~gG~~~i  176 (229)
T PF01269_consen  144 VDVIFQDVAQPDQARIAALNARHF---LKPGGHLII  176 (229)
T ss_dssp             EEEEEEE-SSTTHHHHHHHHHHHH---EEEEEEEEE
T ss_pred             ccEEEecCCChHHHHHHHHHHHhh---ccCCcEEEE
Confidence            999999988665544 45666677   999998876

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.05  E-value=1.9e-06  Score=72.31  Aligned_cols=106  Identities=19%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             CCCEEEEEcccccHHHHH----HHHHCC----CCCEEEEEecCccHHHHHHHH--------------HHHh-----C---
Q 023411          119 GAQRCIEVGVYTGYSSLA----IALVLP----ESGCLVACERDARSLEVAKKY--------------YERA-----G---  168 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~----la~~~~----~~~~v~~iD~s~~~~~~a~~~--------------~~~~-----g---  168 (282)
                      ++-+|+-.||++|.-+-.    +.+..+    ...+++|+|+|+.+++.|++-              .++.     +   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            456999999999974332    233111    135899999999999998753              1111     1   


Q ss_pred             -----CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          169 -----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       169 -----~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                           +.++|+|.+.|..+..+.      .+.||+|||-++.-     .....++.+...   |+|||+|++...
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~---L~pgG~L~lG~s  176 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPP------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRS---LKPGGYLFLGHS  176 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGG---EEEEEEEEE-TT
T ss_pred             eEChHHcCceEEEecccCCCCcc------cCCccEEEecCEEEEeCHHHHHHHHHHHHHH---cCCCCEEEEecC
Confidence                 124789999888872222      58999999988732     234456666666   999999999543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.91  E-value=0.00016  Score=64.89  Aligned_cols=97  Identities=14%  Similarity=0.100  Sum_probs=72.6

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      -...+|+|.|.|..+..+...+|   ++-+++.+...+..++.++. .|    |+.+-||.....|         +-|+|
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P---------~~daI  240 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP---------KGDAI  240 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC---------CcCeE
Confidence            47889999999999999998776   58888888888877777764 34    7788888875433         33588


Q ss_pred             EEc----CC-ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          200 FVD----AE-KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       200 ~id----~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      |+-    ++ .++...+++.|++.   |+|||.|++-+.+.+
T Consensus       241 ~mkWiLhdwtDedcvkiLknC~~s---L~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  241 WMKWILHDWTDEDCVKILKNCKKS---LPPGGKIIVVENVTP  279 (342)
T ss_pred             EEEeecccCChHHHHHHHHHHHHh---CCCCCEEEEEeccCC
Confidence            763    33 45577789999888   999987766544444

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.90  E-value=0.00019  Score=60.55  Aligned_cols=102  Identities=16%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .+.++.||||-.||.+.++.+..+ ...+++.|+++..++.|.++++.+++.++++...+|....+..      ++.+|.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~------~d~~d~   88 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL------EDEIDV   88 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc------cCCcCE
Confidence            344599999999999999998765 6789999999999999999999999999999999999654432      468999


Q ss_pred             EEEcCC-ccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVDAE-KRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id~~-~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |++.+- ..-....+++-.+.   |+.--.+|+
T Consensus        89 ivIAGMGG~lI~~ILee~~~~---l~~~~rlIL  118 (226)
T COG2384          89 IVIAGMGGTLIREILEEGKEK---LKGVERLIL  118 (226)
T ss_pred             EEEeCCcHHHHHHHHHHhhhh---hcCcceEEE
Confidence            887654 33345556665555   543234444

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.89  E-value=5.6e-05  Score=69.76  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=81.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+-+|||.=+|+|.=++..+..++...+|++-|+|+++.+..++|++.+++.+ ++++.+.|+...+...     ...||
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~-----~~~fD  123 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR-----QERFD  123 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS-----TT-EE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc-----cccCC
Confidence            34589999999999999999987644789999999999999999999999987 7999999997765322     58999


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|=+|+--. ...|++.+.+.   ++.||+|.+...
T Consensus       124 ~IDlDPfGS-p~pfldsA~~~---v~~gGll~vTaT  155 (377)
T PF02005_consen  124 VIDLDPFGS-PAPFLDSALQA---VKDGGLLCVTAT  155 (377)
T ss_dssp             EEEE--SS---HHHHHHHHHH---EEEEEEEEEEE-
T ss_pred             EEEeCCCCC-ccHhHHHHHHH---hhcCCEEEEecc
Confidence            999997744 45688888888   999999999654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.87  E-value=0.00019  Score=62.97  Aligned_cols=149  Identities=21%  Similarity=0.336  Sum_probs=105.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--CCC-CcEEEEEcchhhHHHHHHhCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVS-HKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~~-~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ++..+++||-||-|.|......+++ +.-+.+.-+|++...++..++++...  |.+ .+|.++.||...++....    
T Consensus       118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----  192 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----  192 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence            4567899999999999998877776 32368999999999999999998863  332 579999999988887764    


Q ss_pred             CCceeEEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEe-CCCCCCcccCCcCCChhhHHHHHHHHHhhhCCC
Q 023411          193 ASSYDFAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVID-NVLWHGKVADQMVNDAKTISIRNFNKNLMEDER  264 (282)
Q Consensus       193 ~~~fDlV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~d-d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (282)
                      .++||+|+.|.....       ...+++.+.+-   ||+||+++.. +.+|--.        ..-.-+++|.+.+...-.
T Consensus       193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~a---Lk~dgv~~~q~ec~wl~~--------~~i~e~r~~~~~~f~~t~  261 (337)
T KOG1562|consen  193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDA---LKGDGVVCTQGECMWLHL--------DYIKEGRSFCYVIFDLTA  261 (337)
T ss_pred             cCCceEEEEecCCccchHHHHHHHHHHHHHHHh---hCCCcEEEEecceehHHH--------HHHHHHHHhHHHhcCccc
Confidence            589999999866221       34477777777   9999998873 2222111        112235666666655555


Q ss_pred             eEEEEeec----CCceEEEE
Q 023411          265 VSISMVPI----GDGMTICQ  280 (282)
Q Consensus       265 ~~~~~lp~----~~Gl~~~~  280 (282)
                      +-.+..|+    .-|+.+|-
T Consensus       262 ya~ttvPTypsg~igf~l~s  281 (337)
T KOG1562|consen  262 YAITTVPTYPSGRIGFMLCS  281 (337)
T ss_pred             eeeecCCCCccceEEEEEec
Confidence            66677775    44555554

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.84  E-value=4.6e-05  Score=63.86  Aligned_cols=119  Identities=13%  Similarity=0.135  Sum_probs=71.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      ..++..+....+...|.|+|||.+..+    +.++.+-.|...|+...              .+  .++.+|.... |--
T Consensus        61 d~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~--------------n~--~Vtacdia~v-PL~  119 (219)
T PF05148_consen   61 DVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP--------------NP--RVTACDIANV-PLE  119 (219)
T ss_dssp             HHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S--------------ST--TEEES-TTS--S--
T ss_pred             HHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC--------------CC--CEEEecCccC-cCC
Confidence            445566655556679999999998876    34443457999998653              12  3455777543 321


Q ss_pred             HhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCe
Q 023411          188 ILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERV  265 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (282)
                           +++.|+++..-.  ..++..++.++.++   |||||.|.+..+.-.=.            .+..|.+.+..- +|
T Consensus       120 -----~~svDv~VfcLSLMGTn~~~fi~EA~Rv---LK~~G~L~IAEV~SRf~------------~~~~F~~~~~~~-GF  178 (219)
T PF05148_consen  120 -----DESVDVAVFCLSLMGTNWPDFIREANRV---LKPGGILKIAEVKSRFE------------NVKQFIKALKKL-GF  178 (219)
T ss_dssp             -----TT-EEEEEEES---SS-HHHHHHHHHHH---EEEEEEEEEEEEGGG-S-------------HHHHHHHHHCT-TE
T ss_pred             -----CCceeEEEEEhhhhCCCcHHHHHHHHhe---eccCcEEEEEEecccCc------------CHHHHHHHHHHC-CC
Confidence                 689999876655  56788999999999   99999999987742211            357787776544 55


Q ss_pred             EEE
Q 023411          266 SIS  268 (282)
Q Consensus       266 ~~~  268 (282)
                      ...
T Consensus       179 ~~~  181 (219)
T PF05148_consen  179 KLK  181 (219)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            554

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.82  E-value=0.0003  Score=62.08  Aligned_cols=86  Identities=26%  Similarity=0.258  Sum_probs=72.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...+....+|..-|.|+.+..+++.+++.++++++|.++.+++.|++.+...+  ++++++++++.+....+...+ .++
T Consensus        20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~-i~~   96 (314)
T COG0275          20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG-IGK   96 (314)
T ss_pred             ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC-CCc
Confidence            44566899999999999999999999878999999999999999999988654  689999999887666554433 579


Q ss_pred             eeEEEEcCC
Q 023411          196 YDFAFVDAE  204 (282)
Q Consensus       196 fDlV~id~~  204 (282)
                      +|-|+.|-+
T Consensus        97 vDGiL~DLG  105 (314)
T COG0275          97 VDGILLDLG  105 (314)
T ss_pred             eeEEEEecc
Confidence            999998744

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.81  E-value=6e-05  Score=66.98  Aligned_cols=83  Identities=20%  Similarity=0.320  Sum_probs=49.0

Q ss_pred             CCEEEEEcccccHH-HHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEEcchhh-HHHHHHhCCCCCce
Q 023411          120 AQRCIEVGVYTGYS-SLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-SLKALILNGEASSY  196 (282)
Q Consensus       120 ~~~VLEIG~G~G~~-t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~~-~l~~l~~~~~~~~f  196 (282)
                      ..++||||||...+ .+.-++. . +-+++|.|+++..++.|+++++.+ ++.++|+++.....+ ++..+..  ..+.|
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~-~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~  178 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKL-Y-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERF  178 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-E
T ss_pred             ceEeecCCccHHHHHHHHhhhh-c-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--cccee
Confidence            34799999986543 3333332 2 579999999999999999999999 999999998764322 2222221  14699


Q ss_pred             eEEEEcCCcc
Q 023411          197 DFAFVDAEKR  206 (282)
Q Consensus       197 DlV~id~~~~  206 (282)
                      |+.+|+++..
T Consensus       179 dftmCNPPFy  188 (299)
T PF05971_consen  179 DFTMCNPPFY  188 (299)
T ss_dssp             EEEEE-----
T ss_pred             eEEecCCccc
Confidence            9999987733

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.81  E-value=6.9e-05  Score=61.91  Aligned_cols=76  Identities=17%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++++|||+|+|+|..++..++..  ...|++.|+.|.....++-|.+.+|+.  +.+...|...  .       +..
T Consensus        76 etVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~-------~~~  142 (218)
T COG3897          76 ETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S-------PPA  142 (218)
T ss_pred             cccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C-------Ccc
Confidence            34578899999999999999888764  368999999998888888888888864  7888777643  1       589


Q ss_pred             eeEEEEcCC
Q 023411          196 YDFAFVDAE  204 (282)
Q Consensus       196 fDlV~id~~  204 (282)
                      ||+++....
T Consensus       143 ~Dl~LagDl  151 (218)
T COG3897         143 FDLLLAGDL  151 (218)
T ss_pred             eeEEEeece
Confidence            999987544

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.79  E-value=5.7e-05  Score=62.68  Aligned_cols=107  Identities=15%  Similarity=0.182  Sum_probs=75.6

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC------CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      -.+.|||||.|.+...++..+| +.-+.|.||-....+..++++...+.      -.++.+...++...++.+...|.- 
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL-  139 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL-  139 (249)
T ss_pred             ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc-
Confidence            4689999999999999999998 78899999999999999999887652      134788888888888877654411 


Q ss_pred             ceeEEEEcCCcc----------ccHHHHHHHHHhhcCCCCCcEEEE-eCC
Q 023411          195 SYDFAFVDAEKR----------MYQEYFELLLQLLLQIRVGGIIVI-DNV  233 (282)
Q Consensus       195 ~fDlV~id~~~~----------~~~~~l~~~~~~~~~LkpgG~lv~-dd~  233 (282)
                      +-+ .|+-..++          ....++.+..=+   |++||.+.. .|+
T Consensus       140 skm-ff~fpdpHfk~~khk~rii~~~l~~eyay~---l~~gg~~ytitDv  185 (249)
T KOG3115|consen  140 SKM-FFLFPDPHFKARKHKWRIITSTLLSEYAYV---LREGGILYTITDV  185 (249)
T ss_pred             ccc-eeecCChhHhhhhccceeechhHHHHHHhh---hhcCceEEEEeeH
Confidence            112 22222211          123355555555   999998754 444

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.72  E-value=0.00043  Score=60.46  Aligned_cols=165  Identities=13%  Similarity=0.113  Sum_probs=83.4

Q ss_pred             CCChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHH----hhcCCCEEEEEcccc--cHHHHHHHHH
Q 023411           67 SVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLV----QILGAQRCIEVGVYT--GYSSLAIALV  140 (282)
Q Consensus        67 ~~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~----~~~~~~~VLEIG~G~--G~~t~~la~~  140 (282)
                      +...++++|+.+.....+.=+++-+.....--....+-.....++...+    ....-...||||||-  -..+..+++.
T Consensus        12 P~~ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~   91 (267)
T PF04672_consen   12 PSPARVYDYLLGGKDNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQR   91 (267)
T ss_dssp             --HHHHHHHHCT-SS--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHH
T ss_pred             CcHHHHHHHHhCCccCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHh
Confidence            3445788888876554444444433332221111222233333444433    334667999999993  4467888888


Q ss_pred             CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH---hC--CC-CCceeEEEEcC-----CccccH
Q 023411          141 LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI---LN--GE-ASSYDFAFVDA-----EKRMYQ  209 (282)
Q Consensus       141 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~---~~--~~-~~~fDlV~id~-----~~~~~~  209 (282)
                      ..++++|+-+|.+|-.+..++..+....- .+..++++|..+.-.-+.   ..  -+ +.++=++++..     +..+..
T Consensus        92 ~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~  170 (267)
T PF04672_consen   92 VAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPA  170 (267)
T ss_dssp             H-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHH
T ss_pred             hCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHH
Confidence            77789999999999999999998875432 348999999987432221   00  01 12333333321     112344


Q ss_pred             HHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          210 EYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       210 ~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      ..+..+...   |.||++|++.....
T Consensus       171 ~iv~~l~d~---lapGS~L~ish~t~  193 (267)
T PF04672_consen  171 GIVARLRDA---LAPGSYLAISHATD  193 (267)
T ss_dssp             HHHHHHHCC---S-TT-EEEEEEEB-
T ss_pred             HHHHHHHHh---CCCCceEEEEecCC
Confidence            455555554   99999999987753

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.72  E-value=0.00013  Score=65.23  Aligned_cols=87  Identities=22%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++..++|.-.|.|+.+..+++.+++ ++++|+|.++++++.+++.+...  .+++.++++++.+....+.......++
T Consensus        18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~   94 (310)
T PF01795_consen   18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKV   94 (310)
T ss_dssp             --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred             cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCcc
Confidence            567779999999999999999999984 99999999999999998877643  678999999998776655544125799


Q ss_pred             eEEEEcCCcc
Q 023411          197 DFAFVDAEKR  206 (282)
Q Consensus       197 DlV~id~~~~  206 (282)
                      |-|++|-+..
T Consensus        95 dgiL~DLGvS  104 (310)
T PF01795_consen   95 DGILFDLGVS  104 (310)
T ss_dssp             EEEEEE-S--
T ss_pred             CEEEEccccC
Confidence            9999986633

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.69  E-value=0.00047  Score=53.36  Aligned_cols=106  Identities=19%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHHhCCCC-CceeEEE
Q 023411          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEA-SSYDFAF  200 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~l~~~~~~-~~fDlV~  200 (282)
                      ++|+|||+|..+ .+....+....++++|+++.++..++..... .....+.+..++.... .+..     . ..||++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~  124 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFE-----DSASFDLVI  124 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCC-----CCCceeEEe
Confidence            999999999987 4444333224899999999988885544432 1111167777776542 2211     2 3799993


Q ss_pred             EcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          201 VDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       201 id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      .......  ....+..+.+.   ++|+|.+++........
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~---l~~~g~~~~~~~~~~~~  161 (257)
T COG0500         125 SLLVLHLLPPAKALRELLRV---LKPGGRLVLSDLLRDGL  161 (257)
T ss_pred             eeeehhcCCHHHHHHHHHHh---cCCCcEEEEEeccCCCC
Confidence            3333221  35667777777   99999998877765443

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.68  E-value=4.4e-05  Score=71.47  Aligned_cols=100  Identities=11%  Similarity=0.123  Sum_probs=56.1

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      -+.+||||||+|.++.+|.+.   +-...++-..... +...+..-+.|+..-+.+.   +..-+|..     ++.||+|
T Consensus       118 iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~-~~qvqfaleRGvpa~~~~~---~s~rLPfp-----~~~fDmv  185 (506)
T PF03141_consen  118 IRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEH-EAQVQFALERGVPAMIGVL---GSQRLPFP-----SNAFDMV  185 (506)
T ss_pred             eEEEEeccceeehhHHHHhhC---CceEEEcccccCC-chhhhhhhhcCcchhhhhh---ccccccCC-----ccchhhh
Confidence            357899999999999999875   2333333332221 1111222223443322111   12223332     6899999


Q ss_pred             EEcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          200 FVDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       200 ~id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      -|...    ..+-.-++-++-++   |||||+++....-
T Consensus       186 Hcsrc~i~W~~~~g~~l~evdRv---LRpGGyfv~S~pp  221 (506)
T PF03141_consen  186 HCSRCLIPWHPNDGFLLFEVDRV---LRPGGYFVLSGPP  221 (506)
T ss_pred             hcccccccchhcccceeehhhhh---hccCceEEecCCc
Confidence            87533    22222356667777   9999998886553

; GO: 0008168 methyltransferase activity

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.67  E-value=0.00043  Score=62.45  Aligned_cols=100  Identities=14%  Similarity=0.069  Sum_probs=69.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.++|||||++|++|-.+++.   +++|++||..+-.     ..+.   -..+|+.+.+|.....+.      .+.+|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~------~~~vD  272 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP------RKNVD  272 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC------CCCCC
Confidence            57789999999999999999985   5799999965421     1122   245799999998766442      36899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCCCCCCc
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNVLWHGK  238 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~~~~g~  238 (282)
                      ++++|.... .....+.+.+.   |..| ..-.+=|+..++.
T Consensus       273 wvVcDmve~-P~rva~lm~~W---l~~g~cr~aIfnLKlpmk  310 (357)
T PRK11760        273 WLVCDMVEK-PARVAELMAQW---LVNGWCREAIFNLKLPMK  310 (357)
T ss_pred             EEEEecccC-HHHHHHHHHHH---HhcCcccEEEEEEEcCCC
Confidence            999998733 23345555555   7666 2334445666664

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.65  E-value=0.0045  Score=53.19  Aligned_cols=102  Identities=20%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ..+++||=+|=.--.+ +.++.... ..+|+.+|+++..++..++..++.|+.  ++.++.|..+-+|.-.    .++||
T Consensus        43 L~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD  114 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFD  114 (243)
T ss_dssp             STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BS
T ss_pred             ccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCC
Confidence            3678999999665443 44443222 479999999999999999999999986  9999999988766432    58999


Q ss_pred             EEEEcCCc--cccHHHHHHHHHhhcCCCCCc-EEEE
Q 023411          198 FAFVDAEK--RMYQEYFELLLQLLLQIRVGG-IIVI  230 (282)
Q Consensus       198 lV~id~~~--~~~~~~l~~~~~~~~~LkpgG-~lv~  230 (282)
                      ++|.|++.  +...-++......   ||..| ..++
T Consensus       115 ~f~TDPPyT~~G~~LFlsRgi~~---Lk~~g~~gy~  147 (243)
T PF01861_consen  115 VFFTDPPYTPEGLKLFLSRGIEA---LKGEGCAGYF  147 (243)
T ss_dssp             EEEE---SSHHHHHHHHHHHHHT---B-STT-EEEE
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHH---hCCCCceEEE
Confidence            99999983  4455577777776   77666 4333

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.64  E-value=0.00056  Score=58.40  Aligned_cols=98  Identities=14%  Similarity=0.107  Sum_probs=70.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~~~~f  196 (282)
                      .+++.|||||+.||++|..+++.-  ..+|+|+|..-..+.+-   ++   .+.|+..+.. |+....+...    .+..
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---LR---~d~rV~~~E~tN~r~l~~~~~----~~~~  145 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---LR---NDPRVIVLERTNVRYLTPEDF----TEKP  145 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---Hh---cCCcEEEEecCChhhCCHHHc----ccCC
Confidence            477899999999999999999863  26899999987655431   11   3445665543 4544333221    3578


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |++++|...-.....+..+..+   +++++.++.
T Consensus       146 d~~v~DvSFISL~~iLp~l~~l---~~~~~~~v~  176 (245)
T COG1189         146 DLIVIDVSFISLKLILPALLLL---LKDGGDLVL  176 (245)
T ss_pred             CeEEEEeehhhHHHHHHHHHHh---cCCCceEEE
Confidence            9999998877677778888888   999987665

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.59  E-value=0.00085  Score=55.83  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=77.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~  193 (282)
                      .+.++.+||=+|+.+|.....++.-.+ .|.+++||.++......-...+   -.+++--+.+|+..-  ...+     -
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~---~R~Ni~PIL~DA~~P~~Y~~~-----V  143 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE---KRPNIIPILEDARKPEKYRHL-----V  143 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH---hCCCceeeecccCCcHHhhhh-----c
Confidence            356788999999999999999999887 8999999999987654433333   345688888888542  2222     4


Q ss_pred             CceeEEEEcCCccccHH-HHHHHHHhhcCCCCCcEEEE
Q 023411          194 SSYDFAFVDAEKRMYQE-YFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~-~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +..|+||.|-..++... +...+...   |++||.+++
T Consensus       144 e~VDviy~DVAQp~Qa~I~~~Na~~F---Lk~~G~~~i  178 (231)
T COG1889         144 EKVDVIYQDVAQPNQAEILADNAEFF---LKKGGYVVI  178 (231)
T ss_pred             ccccEEEEecCCchHHHHHHHHHHHh---cccCCeEEE
Confidence            78999999988666555 45566677   999996655

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.57  E-value=0.00076  Score=59.72  Aligned_cols=50  Identities=20%  Similarity=0.276  Sum_probs=41.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  167 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~  167 (282)
                      ..+.+|||+|||.|..+..+...++.-.+++++|.|+.+++.++..++..
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            36779999999999877777777764468999999999999998877643

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=0.00041  Score=55.68  Aligned_cols=108  Identities=17%  Similarity=0.192  Sum_probs=70.4

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC--CcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++|+|+|.| +|..++.+|...+ ...|...|-+++.++..++....+-..  .++....-+..    ....+-+..
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~----~aqsq~eq~  102 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW----GAQSQQEQH  102 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh----hhHHHHhhC
Confidence            356789999988 5667788887766 678999999999988887766654221  11222211111    101111146


Q ss_pred             ceeEEEEcC-C--ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDA-E--KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~-~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .||+|++.. .  .++..+..+.++.+   |+|.|.-++-..
T Consensus       103 tFDiIlaADClFfdE~h~sLvdtIk~l---L~p~g~Al~fsP  141 (201)
T KOG3201|consen  103 TFDIILAADCLFFDEHHESLVDTIKSL---LRPSGRALLFSP  141 (201)
T ss_pred             cccEEEeccchhHHHHHHHHHHHHHHH---hCcccceeEecC
Confidence            999999743 3  55667788888888   999998555433

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.45  E-value=0.00017  Score=61.01  Aligned_cols=98  Identities=8%  Similarity=0.046  Sum_probs=71.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      -..++||||+.|+....+....  -.+++-+|.|-.|++.++..-. .++  .+....+|- +.++.-     ++++|+|
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ldf~-----ens~DLi  141 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLDFK-----ENSVDLI  141 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccccc-----ccchhhh
Confidence            3489999999999988877543  2689999999999887765322 222  245556664 344432     6899999


Q ss_pred             EEc---CCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVD---AEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id---~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +..   +|..+.+..+..|...   |||+|.++..
T Consensus       142 isSlslHW~NdLPg~m~~ck~~---lKPDg~Fias  173 (325)
T KOG2940|consen  142 ISSLSLHWTNDLPGSMIQCKLA---LKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhccCchHHHHHHHh---cCCCccchhH
Confidence            864   5667778888888888   9999998774

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.45  E-value=0.00045  Score=59.58  Aligned_cols=97  Identities=10%  Similarity=0.052  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       107 ~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (282)
                      ...++..+-.......|.|+|||-+-++.    ..  .-.|+++|+.+.              .  -+++.+|..+. |-
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~--~~kV~SfDL~a~--------------~--~~V~~cDm~~v-Pl  224 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----SE--RHKVHSFDLVAV--------------N--ERVIACDMRNV-PL  224 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh----cc--ccceeeeeeecC--------------C--CceeeccccCC-cC
Confidence            34456666666667789999999987654    22  357999998642              2  35566777653 21


Q ss_pred             HHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          187 LILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                           ++++.|+++..-.  ..++.+++.++.++   |++||.+-+..+-
T Consensus       225 -----~d~svDvaV~CLSLMgtn~~df~kEa~Ri---Lk~gG~l~IAEv~  266 (325)
T KOG3045|consen  225 -----EDESVDVAVFCLSLMGTNLADFIKEANRI---LKPGGLLYIAEVK  266 (325)
T ss_pred             -----ccCcccEEEeeHhhhcccHHHHHHHHHHH---hccCceEEEEehh
Confidence                 1689999776544  45688899999999   9999999997774

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.41  E-value=0.00038  Score=65.04  Aligned_cols=117  Identities=21%  Similarity=0.222  Sum_probs=88.3

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC-CCCcee
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~-~~~~fD  197 (282)
                      .+..+|-+|-|.|....++...+| ..++++|+++|++++.|++++....-. +..++..|..+.+....+.. ++..||
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence            345788889999999998888887 689999999999999999998764433 56777788888887776643 467999


Q ss_pred             EEEEcCCccc------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCccc
Q 023411          198 FAFVDAEKRM------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVA  240 (282)
Q Consensus       198 lV~id~~~~~------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~  240 (282)
                      +++.|-+-.+            ...++..++..   |.|.|+++++-+-.+..+.
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~---l~p~g~f~inlv~r~~~~~  424 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMI---LPPRGMFIINLVTRNSSFK  424 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhc---cCccceEEEEEecCCcchh
Confidence            9998744111            12344555555   9999999998776666543

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.38  E-value=0.00021  Score=65.43  Aligned_cols=107  Identities=14%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++..++++|||.|....+++..-  .+.+++++.++..+..+.......++.++..++.++..+...      ++..|
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------edn~f  179 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------EDNTF  179 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC------Ccccc
Confidence            4456689999999999999999753  588999999999998888888888888877777666654322      26899


Q ss_pred             eEEEE-cCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFV-DAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~i-d~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |.+.. +..  .......++++.+.   ++|||+.+.....
T Consensus       180 d~v~~ld~~~~~~~~~~~y~Ei~rv---~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  180 DGVRFLEVVCHAPDLEKVYAEIYRV---LKPGGLFIVKEWI  217 (364)
T ss_pred             CcEEEEeecccCCcHHHHHHHHhcc---cCCCceEEeHHHH
Confidence            99854 444  33344556666666   9999999986654

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.38  E-value=0.00022  Score=61.21  Aligned_cols=87  Identities=20%  Similarity=0.251  Sum_probs=54.5

Q ss_pred             HHHHHHhhcCC--CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C------CCcEEEEEcc
Q 023411          110 LLAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V------SHKVKIKHGL  179 (282)
Q Consensus       110 ll~~l~~~~~~--~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~------~~~v~~~~gd  179 (282)
                      .+...+...++  .+|||.-+|.|.-++.++..   +++|+++|.||-.....+.-++.+.  .      ..+++++++|
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d  140 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD  140 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence            34455544444  38999999999999999864   5799999999988777665544331  1      1379999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCC
Q 023411          180 AADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      +.+.+...     ..+||+|++|+=
T Consensus       141 ~~~~L~~~-----~~s~DVVY~DPM  160 (234)
T PF04445_consen  141 ALEYLRQP-----DNSFDVVYFDPM  160 (234)
T ss_dssp             CCCHCCCH-----SS--SEEEE--S
T ss_pred             HHHHHhhc-----CCCCCEEEECCC
Confidence            99887622     689999999854

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.34  E-value=0.003  Score=60.53  Aligned_cols=137  Identities=18%  Similarity=0.244  Sum_probs=98.5

Q ss_pred             CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC---CCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (282)
                      ++.........+++..++...+..+|.|-.||+|+.-......+.+   ...++|.|+++.....++-++--+|....+.
T Consensus       165 ~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~  244 (489)
T COG0286         165 AGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN  244 (489)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence            4566778888899999888877779999999999998888777743   2679999999999999999999888874456


Q ss_pred             EEEcchhhHHHHHHhCCCCCceeEEEEcCCc----------------------------cccHHHHHHHHHhhcCCCCCc
Q 023411          175 IKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       175 ~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~----------------------------~~~~~~l~~~~~~~~~LkpgG  226 (282)
                      ..++|........ .+.+...||+|+...+.                            .....++..+...   |+|||
T Consensus       245 i~~~dtl~~~~~~-~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~---l~~~g  320 (489)
T COG0286         245 IRHGDTLSNPKHD-DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYK---LKPGG  320 (489)
T ss_pred             ccccccccCCccc-ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHh---cCCCc
Confidence            7777765432211 01124789998764331                            0113456666666   99865


Q ss_pred             ---EEEEeCCCCCCc
Q 023411          227 ---IIVIDNVLWHGK  238 (282)
Q Consensus       227 ---~lv~dd~~~~g~  238 (282)
                         +++.+++++.|.
T Consensus       321 ~aaivl~~gvlfr~~  335 (489)
T COG0286         321 RAAIVLPDGVLFRGG  335 (489)
T ss_pred             eEEEEecCCcCcCCC
Confidence               666677777765

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.0031  Score=57.20  Aligned_cols=103  Identities=16%  Similarity=0.214  Sum_probs=83.0

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +.+|+|-=+|+|.=++.++...+. .+++.=|+||++.+.+++|++.+...+ ...+..|+...+...     ...||+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~-----~~~fd~I  125 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHEL-----HRAFDVI  125 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhc-----CCCccEE
Confidence            779999999999999999988762 389999999999999999999884444 566668887666543     4789998


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      =+|+--. ...|++...+.   ++.||+|.+...
T Consensus       126 DiDPFGS-PaPFlDaA~~s---~~~~G~l~vTAT  155 (380)
T COG1867         126 DIDPFGS-PAPFLDAALRS---VRRGGLLCVTAT  155 (380)
T ss_pred             ecCCCCC-CchHHHHHHHH---hhcCCEEEEEec
Confidence            8886633 45678888888   899999998644

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.30  E-value=0.0026  Score=52.35  Aligned_cols=107  Identities=16%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhH--HHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADS--LKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~--l~~l~~~~~~~  194 (282)
                      .+..+|||+||..|.|+...-+...+.|-|.|||+-.-.           ... -++++++ |..+.  ...+...-..-
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r  135 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPE-GATIIQGNDVTDPETYRKIFEALPNR  135 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCC-CcccccccccCCHHHHHHHHHhCCCC
Confidence            468899999999999999988888668999999985421           122 2666666 55442  22222222257


Q ss_pred             ceeEEEEcCCcc-------ccHHHHHHHHHh----hcCCCCCcEEEEeCCCCCCc
Q 023411          195 SYDFAFVDAEKR-------MYQEYFELLLQL----LLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       195 ~fDlV~id~~~~-------~~~~~l~~~~~~----~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ..|+|+.|-.+.       +.....+.|...    ...++|+|.+++.  +|.|.
T Consensus       136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g~  188 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDGS  188 (232)
T ss_pred             cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecCC
Confidence            899999985421       222233444221    1238899999994  67775

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.29  E-value=0.0022  Score=63.75  Aligned_cols=103  Identities=22%  Similarity=0.238  Sum_probs=70.0

Q ss_pred             CEEEEEcccccHHHHHHHHHC-------CC----CCEEEEEecCccHH--------------HHHHHHHHH-----hCC-
Q 023411          121 QRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARSL--------------EVAKKYYER-----AGV-  169 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~-------~~----~~~v~~iD~s~~~~--------------~~a~~~~~~-----~g~-  169 (282)
                      -+|+|+|-|+|...+...+.+       ++    .-+++++|..|-..              +.+++..+.     .|. 
T Consensus        59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~  138 (662)
T PRK01747         59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH  138 (662)
T ss_pred             EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence            489999999999888777555       21    24799999865222              222222211     121 


Q ss_pred             -----CC--cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          170 -----SH--KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM-YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       170 -----~~--~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~-~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                           .+  ++++..||+.+.++.+     ...+|.+|.|+-.     +. ..+++..+.++   ++|||.++--
T Consensus       139 ~~~~~~~~~~l~l~~gd~~~~~~~~-----~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~---~~~~~~~~t~  205 (662)
T PRK01747        139 RLLFDDGRVTLDLWFGDANELLPQL-----DARADAWFLDGFAPAKNPDMWSPNLFNALARL---ARPGATLATF  205 (662)
T ss_pred             EEEecCCcEEEEEEecCHHHHHHhc-----cccccEEEeCCCCCccChhhccHHHHHHHHHH---hCCCCEEEEe
Confidence                 11  3567889999988876     4679999999752     22 35578888888   9999998843

>PHA01634 hypothetical protein

Probab=97.25  E-value=0.00087  Score=51.62  Aligned_cols=74  Identities=20%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .+++|+|||++.|.++++++..-  ..+|+++|.++...+..+++.+.+.+-++.... +   ++ +.     +=+.||+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW-~~-----~Y~~~Di   95 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EW-NG-----EYEDVDI   95 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---cc-cc-----cCCCcce
Confidence            57799999999999999999753  258999999999999999988866443322221 1   11 11     1478999


Q ss_pred             EEEcCC
Q 023411          199 AFVDAE  204 (282)
Q Consensus       199 V~id~~  204 (282)
                      ..+|..
T Consensus        96 ~~iDCe  101 (156)
T PHA01634         96 FVMDCE  101 (156)
T ss_pred             EEEEcc
Confidence            999976

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.22  E-value=0.0015  Score=56.40  Aligned_cols=88  Identities=10%  Similarity=0.084  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411          107 QAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       107 ~~~ll~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      ...++..+... ..+.+|+|||||.--+++.+.... ++..++|+|++..+++.....+...+..  .++...|.....+
T Consensus        92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~  168 (251)
T PF07091_consen   92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP  168 (251)
T ss_dssp             HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT
T ss_pred             HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC
Confidence            34444444443 458899999999988888766543 3689999999999999999999998876  4555556654333


Q ss_pred             HHHhCCCCCceeEEEEcCC
Q 023411          186 ALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~  204 (282)
                             ....|+.++--.
T Consensus       169 -------~~~~DlaLllK~  180 (251)
T PF07091_consen  169 -------KEPADLALLLKT  180 (251)
T ss_dssp             -------TSEESEEEEET-
T ss_pred             -------CCCcchhhHHHH
Confidence                   578999987644

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.12  E-value=0.004  Score=53.26  Aligned_cols=148  Identities=15%  Similarity=0.147  Sum_probs=91.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .+.++.+||=+|+++|.....+...+.+++-|++||.++..-   ++.+.-+.-..+|--+..|+......-.   .-.-
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG---RdL~nmAkkRtNiiPIiEDArhP~KYRm---lVgm  226 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG---RDLINMAKKRTNIIPIIEDARHPAKYRM---LVGM  226 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch---HHHHHHhhccCCceeeeccCCCchheee---eeee
Confidence            456888999999999999999999888889999999988643   3333333334457777778754211100   0367


Q ss_pred             eeEEEEcCCccccHHHH-HHHHHhhcCCCCCcEEEEe--CCCCCCcccCCcCCChhhHHHHHHH--HHhhhCCCeEEEEe
Q 023411          196 YDFAFVDAEKRMYQEYF-ELLLQLLLQIRVGGIIVID--NVLWHGKVADQMVNDAKTISIRNFN--KNLMEDERVSISMV  270 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l-~~~~~~~~~LkpgG~lv~d--d~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l  270 (282)
                      .|+||.|..+++....+ -...-.   ||+||-+++.  ....++.+      ..++....+-.  +.=.-.|.-++++-
T Consensus       227 VDvIFaDvaqpdq~RivaLNA~~F---Lk~gGhfvisikancidstv------~ae~vFa~Ev~klqee~lkP~EqvtLE  297 (317)
T KOG1596|consen  227 VDVIFADVAQPDQARIVALNAQYF---LKNGGHFVISIKANCIDSTV------FAEAVFAAEVKKLQEEQLKPKEQVTLE  297 (317)
T ss_pred             EEEEeccCCCchhhhhhhhhhhhh---hccCCeEEEEEecccccccc------cHHHHHHHHHHHHHHhccCchheeccc
Confidence            89999998866654433 334455   9999988774  22222322      12222222221  11122466777888


Q ss_pred             ecCCceEE
Q 023411          271 PIGDGMTI  278 (282)
Q Consensus       271 p~~~Gl~~  278 (282)
                      |+-.+-.+
T Consensus       298 P~erdha~  305 (317)
T KOG1596|consen  298 PFERDHAC  305 (317)
T ss_pred             cccCCceE
Confidence            87554443

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.12  E-value=0.0039  Score=54.78  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=71.6

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC------------------------------
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------------------------  169 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~------------------------------  169 (282)
                      ..+||-=|||.|..+..+|..   +..+.|.|.|--|+-..+-.++....                              
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            468999999999999999985   57999999998886443332221100                              


Q ss_pred             ---------CCcEEEEEcchhhHHHHHHhCCCCCceeEEE----EcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC-C
Q 023411          170 ---------SHKVKIKHGLAADSLKALILNGEASSYDFAF----VDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL-W  235 (282)
Q Consensus       170 ---------~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~----id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~-~  235 (282)
                               ..++....||+.+....-   ...++||.|+    +|- .++..+|++.+.++   |||||+.|=-..+ |
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~---~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~l---LkpgG~WIN~GPLly  206 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPD---ENKGSFDVVVTCFFIDT-AENIIEYIETIEHL---LKPGGYWINFGPLLY  206 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCc---ccCCcccEEEEEEEeec-hHHHHHHHHHHHHH---hccCCEEEecCCccc
Confidence                     113445555555432210   0136899874    444 45677899999999   9999977654444 4


Q ss_pred             CCc
Q 023411          236 HGK  238 (282)
Q Consensus       236 ~g~  238 (282)
                      +-.
T Consensus       207 h~~  209 (270)
T PF07942_consen  207 HFE  209 (270)
T ss_pred             cCC
Confidence            443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.07  E-value=0.0011  Score=54.89  Aligned_cols=115  Identities=9%  Similarity=0.048  Sum_probs=67.5

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHH------HHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL------EVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~------~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (282)
                      .++..+++.+|+|+=.|.|++|..++..+.+.|.|+++-..+...      ...+....+.... +++.+-.+.....  
T Consensus        42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~--  118 (238)
T COG4798          42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG--  118 (238)
T ss_pred             EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC--
Confidence            345567888999999999999999999998889999987654311      1111111111222 2333322222111  


Q ss_pred             HHhCCCCCceeEEEEcCC----------ccccHHHHHHHHHhhcCCCCCcEEEEeC-CCCCCc
Q 023411          187 LILNGEASSYDFAFVDAE----------KRMYQEYFELLLQLLLQIRVGGIIVIDN-VLWHGK  238 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~----------~~~~~~~l~~~~~~~~~LkpgG~lv~dd-~~~~g~  238 (282)
                      .     .+..|+++....          ..........+.+.   |||||++++.| ...+|.
T Consensus       119 ~-----pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~---LKPGGv~~V~dH~a~pG~  173 (238)
T COG4798         119 A-----PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKA---LKPGGVYLVEDHRADPGS  173 (238)
T ss_pred             C-----CCcccccccchhhhhhhccccCcchHHHHHHHHHHh---cCCCcEEEEEeccccCCC
Confidence            1     356666654211          12234456667777   99999886644 445554

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.87  E-value=0.0012  Score=61.87  Aligned_cols=117  Identities=22%  Similarity=0.217  Sum_probs=93.8

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      .....+..++-+|||.=+++|.-++..+..++.-..+++-|.++..++..++|++.++.++.++..+.|+....-...  
T Consensus       101 ~~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~--  178 (525)
T KOG1253|consen  101 AALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP--  178 (525)
T ss_pred             cchhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc--
Confidence            344555667889999999999999999999984468999999999999999999999999989999999865432221  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .....||+|=+|.--. ...|++.+.+.   ++.||+|.+...
T Consensus       179 ~~~~~FDvIDLDPyGs-~s~FLDsAvqa---v~~gGLL~vT~T  217 (525)
T KOG1253|consen  179 MVAKFFDVIDLDPYGS-PSPFLDSAVQA---VRDGGLLCVTCT  217 (525)
T ss_pred             ccccccceEecCCCCC-ccHHHHHHHHH---hhcCCEEEEEec
Confidence            0147899998887633 45678888888   999999998643

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.87  E-value=8.4e-05  Score=61.91  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=70.4

Q ss_pred             CCCCccCHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411           98 GSQMQVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~---~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (282)
                      ++.+..++++-+-+..+-.   ...+.++||+|+|.|.++..++..+.   +|++.|.|..|....++    .+.    +
T Consensus        88 GsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~k----k~y----n  156 (288)
T KOG3987|consen   88 GSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KNY----N  156 (288)
T ss_pred             CceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhh----cCC----c
Confidence            3344556655333322221   13457999999999999999987764   69999999887655433    222    2


Q ss_pred             EEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCC-CcEEEEeCCC
Q 023411          175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRV-GGIIVIDNVL  234 (282)
Q Consensus       175 ~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~  234 (282)
                      ++.  ..|+...      +-+||+|.|-......-+.++.+..++..|+| +|.+|+.=++
T Consensus       157 Vl~--~~ew~~t------~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  157 VLT--EIEWLQT------DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             eee--ehhhhhc------CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            221  2233321      45799998765533332333334333333999 7888776554

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.85  E-value=0.0016  Score=56.90  Aligned_cols=115  Identities=12%  Similarity=0.094  Sum_probs=62.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC---------------------------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH---------------------------  171 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~---------------------------  171 (282)
                      ++.++||||||.-..-  +..+.+.--+++..|..+...+..++.++..+--+                           
T Consensus        56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            4668999999974332  22222212479999999998887777665432111                           


Q ss_pred             cE-EEEEcchhhHHHHHHhCCCCCceeEEEEcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          172 KV-KIKHGLAADSLKALILNGEASSYDFAFVDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       172 ~v-~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      .| .++.+|..+..+--.......+||.|+.--.    -.+...|...+.++.++|||||.|++-.++-
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~  202 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG  202 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence            12 2444555432111000000235999986433    3344455555555566699999999987763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.74  E-value=0.012  Score=53.44  Aligned_cols=99  Identities=22%  Similarity=0.269  Sum_probs=68.8

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....++++|+-+|+| .|..++.+|+++.  ++|+++|.+++-.+.|++.    |-   -.++.....+..+.+     .
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~-----~  227 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV-----K  227 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh-----H
Confidence            445678899888877 5667888998875  9999999999988777764    22   233333222344444     2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +.+|+|+.-.. .   ..++...++   |++||.+++=...
T Consensus       228 ~~~d~ii~tv~-~---~~~~~~l~~---l~~~G~~v~vG~~  261 (339)
T COG1064         228 EIADAIIDTVG-P---ATLEPSLKA---LRRGGTLVLVGLP  261 (339)
T ss_pred             hhCcEEEECCC-h---hhHHHHHHH---HhcCCEEEEECCC
Confidence            45999997766 2   346667777   9999999885443

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.70  E-value=0.0017  Score=57.22  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=71.9

Q ss_pred             CCCEEEEEcccccHHHH-HHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYTGYSSL-AIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~-~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+..|+|+-+|.||+|+ .+..+ + ...|+++|.+|..++..+++++.+++.++..++.||-...-+       ....|
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~a-g-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~Ad  264 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTA-G-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRAD  264 (351)
T ss_pred             ccchhhhhhcccceEEeehhhcc-C-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccch
Confidence            44789999999999999 44443 2 368999999999999999999999998888888888754322       46777


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCC-Cc-EEEEeCCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRV-GG-IIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~Lkp-gG-~lv~dd~~  234 (282)
                      -|.+.--+..-....-.+ +.   ||| || ++=+|..+
T Consensus       265 rVnLGLlPSse~~W~~A~-k~---Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  265 RVNLGLLPSSEQGWPTAI-KA---LKPEGGSILHIHENV  299 (351)
T ss_pred             heeeccccccccchHHHH-HH---hhhcCCcEEEEeccc
Confidence            777654433222222233 33   555 44 66565443

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.70  E-value=0.01  Score=50.43  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=65.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCC----CC----EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--HHHHHH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPE----SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALI  188 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~----~~----~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~l~  188 (282)
                      ..++++|+.+..|.|+..+++.+-.    .+    .+++||+.+-.           .++. |.-+++|+..  ....++
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii  108 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAII  108 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHH
Confidence            4568999999999999999987622    22    39999997632           2333 7778888754  233333


Q ss_pred             hCCCCCceeEEEEcCCc-----cccHH---------HHHHHHHhhcCCCCCcEEEEe
Q 023411          189 LNGEASSYDFAFVDAEK-----RMYQE---------YFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~-----~~~~~---------~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .-...++.|+|++|+.+     ++..+         .+.....+   |+|||.+|..
T Consensus       109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~V---lk~Gg~FVaK  162 (294)
T KOG1099|consen  109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCV---LKPGGSFVAK  162 (294)
T ss_pred             HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhhe---ecCCCeeehh
Confidence            33234699999999763     22222         22333344   9999999874

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.58  E-value=0.0046  Score=57.16  Aligned_cols=59  Identities=20%  Similarity=0.343  Sum_probs=52.2

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      .|||||+|||..+...+++..  -.|+++|.-..|.+.|++...++|.+++++++.-...|
T Consensus        69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            689999999999998888753  46999999999999999999999999999998766544

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.57  E-value=0.027  Score=51.61  Aligned_cols=104  Identities=20%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~~~~  195 (282)
                      .++.+|+-+|||. |..+..+++..+ ..+|+.+|.+++.++.|++....    +.+..... +.......+   .....
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~---t~g~g  238 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILEL---TGGRG  238 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHH---hCCCC
Confidence            3444899999994 777788888776 57999999999999999885531    11111111 121111111   11247


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      +|++|-...   ....++.+.++   ++|||.+++=.+.-
T Consensus       239 ~D~vie~~G---~~~~~~~ai~~---~r~gG~v~~vGv~~  272 (350)
T COG1063         239 ADVVIEAVG---SPPALDQALEA---LRPGGTVVVVGVYG  272 (350)
T ss_pred             CCEEEECCC---CHHHHHHHHHH---hcCCCEEEEEeccC
Confidence            999997666   44467888888   99999998865543

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.56  E-value=0.038  Score=50.26  Aligned_cols=119  Identities=17%  Similarity=0.220  Sum_probs=76.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCC---CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH--
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI--  188 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~--  188 (282)
                      +....++.+|||..+..|+-|+.+.+.+..   .+.|++=|.++..+.......+..... .+.+...++... +...  
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~-p~~~~~  227 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLF-PNIYLK  227 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceec-cccccc
Confidence            345678999999999999999999988742   358999999999888887777544332 345555444322 1111  


Q ss_pred             hCC--CCCceeEEEEcCCc------cccHHHH-----------------HHHHHhhcCCCCCcEEEEeCCC
Q 023411          189 LNG--EASSYDFAFVDAEK------RMYQEYF-----------------ELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       189 ~~~--~~~~fDlV~id~~~------~~~~~~l-----------------~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ..+  +...||-|++|.+.      ....+.+                 +.+.+-.++||+||.+|....-
T Consensus       228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS  298 (375)
T KOG2198|consen  228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS  298 (375)
T ss_pred             cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence            111  24689999998541      1111111                 1222223459999999987664

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.52  E-value=0.0038  Score=52.72  Aligned_cols=94  Identities=15%  Similarity=0.069  Sum_probs=54.9

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      -++|||||-+....+....    --.|+.||+++..                -.+.+.|+.+..  + ...+.++||+|.
T Consensus        53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rp--l-p~~~~e~FdvIs  109 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERP--L-PKNESEKFDVIS  109 (219)
T ss_pred             ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCC--C-CCCcccceeEEE
Confidence            5999999987765543322    2359999998742                244555665531  1 111268999997


Q ss_pred             EcCC---ccccHHHHHHHHHhhcCCCCCcE-----EEEeCCCCCCcc
Q 023411          201 VDAE---KRMYQEYFELLLQLLLQIRVGGI-----IVIDNVLWHGKV  239 (282)
Q Consensus       201 id~~---~~~~~~~l~~~~~~~~~LkpgG~-----lv~dd~~~~g~~  239 (282)
                      +.-+   .+....--+++.+...+|+|+|.     |++  |+....+
T Consensus       110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFl--VlP~~Cv  154 (219)
T PF11968_consen  110 LSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFL--VLPLPCV  154 (219)
T ss_pred             EEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEE--EeCchHh
Confidence            6533   22222333444444444999999     766  4444444

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.063  Score=46.33  Aligned_cols=113  Identities=17%  Similarity=0.127  Sum_probs=79.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCC---CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      .++...++...+|+|+|+-.-+..+...+.+.   .+++.||++...++...+.+...-..-.+.-+++|....+..++.
T Consensus        72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~  151 (321)
T COG4301          72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR  151 (321)
T ss_pred             HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence            34556788999999999999999998887532   589999999998876555444322222377788888776665541


Q ss_pred             CCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          190 NGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       190 ~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                         .+.==++|+...     +.....++..+...   |+||-++++.
T Consensus       152 ---~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a---~~pGd~~LlG  192 (321)
T COG4301         152 ---GGRRLFVFLGSTLGNLTPGECAVFLTQLRGA---LRPGDYFLLG  192 (321)
T ss_pred             ---CCeEEEEEecccccCCChHHHHHHHHHHHhc---CCCcceEEEe
Confidence               123234555433     45566788888888   9999888773

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.44  E-value=0.0093  Score=56.39  Aligned_cols=102  Identities=12%  Similarity=0.078  Sum_probs=72.8

Q ss_pred             CCEEEEEcccccHHHHHHHHH---CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          120 AQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ...|+-+|.|.|-......++   ..+.-++++||-+|.++...+. .+.....++|+++.+|..++.+.      ..+.
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap------~eq~  440 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP------REQA  440 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc------hhhc
Confidence            345678899999886554443   3445789999999998866554 55556678999999999876531      2678


Q ss_pred             eEEEEc-----CCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVD-----AEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id-----~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+++..     ++.+-.++=+.-+.+.   |||+|+-|-.
T Consensus       441 DI~VSELLGSFGDNELSPECLDG~q~f---LkpdgIsIP~  477 (649)
T KOG0822|consen  441 DIIVSELLGSFGDNELSPECLDGAQKF---LKPDGISIPS  477 (649)
T ss_pred             cchHHHhhccccCccCCHHHHHHHHhh---cCCCceEccc
Confidence            988642     3344455667777787   9999886643

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.44  E-value=0.036  Score=49.64  Aligned_cols=110  Identities=19%  Similarity=0.251  Sum_probs=71.9

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE-EcchhhHHHHHHhCC-C
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLKALILNG-E  192 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~-~gd~~~~l~~l~~~~-~  192 (282)
                      ..+.+.+||-+|+| .|..+...|++++ ..+|+.+|+++..++.|++ +   |.+. +... +.+..+.+.....+. .
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhcc
Confidence            34678899999999 5888888999987 6799999999999999998 4   3332 2211 112123333333332 2


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV  239 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~  239 (282)
                      ...+|+.|-....+..   ++.....   ++.||.+++  +.|....
T Consensus       240 ~~~~d~~~dCsG~~~~---~~aai~a---~r~gGt~vl--vg~g~~~  278 (354)
T KOG0024|consen  240 KKQPDVTFDCSGAEVT---IRAAIKA---TRSGGTVVL--VGMGAEE  278 (354)
T ss_pred             ccCCCeEEEccCchHH---HHHHHHH---hccCCEEEE--eccCCCc
Confidence            3568999966554432   3445555   899999887  4444443

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.42  E-value=0.0042  Score=55.75  Aligned_cols=98  Identities=12%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHH-------HHHHHHHHhCCCC
Q 023411           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE-------VAKKYYERAGVSH  171 (282)
Q Consensus        99 ~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~-------~a~~~~~~~g~~~  171 (282)
                      +.-.+.++..-+++.++...+++.|.|=-.|||++.+..|..   ++.|+|.||+-.++.       -.+.|+++.|..+
T Consensus       188 GnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~  264 (421)
T KOG2671|consen  188 GNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS  264 (421)
T ss_pred             CCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcc
Confidence            345678888888999999999999999999999988777763   589999999887765       4578999988553


Q ss_pred             -cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411          172 -KVKIKHGLAADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       172 -~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                       -+.++.+|.......-     ...||.|+||++
T Consensus       265 ~fldvl~~D~sn~~~rs-----n~~fDaIvcDPP  293 (421)
T KOG2671|consen  265 QFLDVLTADFSNPPLRS-----NLKFDAIVCDPP  293 (421)
T ss_pred             hhhheeeecccCcchhh-----cceeeEEEeCCC
Confidence             3577788876532221     479999999965

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.17  E-value=0.0047  Score=55.63  Aligned_cols=106  Identities=23%  Similarity=0.260  Sum_probs=61.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ..+++|||+|.|.|.-...+-..+|+--.++-+|.|+..-++.... ..+-...+......|..+..-.++   -.+.|+
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl-~~nv~t~~td~r~s~vt~dRl~lp---~ad~yt  187 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTL-AENVSTEKTDWRASDVTEDRLSLP---AADLYT  187 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHH-HhhcccccCCCCCCccchhccCCC---ccceee
Confidence            4677899999999877666666677546788888887654444333 222222222223333322111111   147888


Q ss_pred             EEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++++-+.      ......+++.++.+   +.|||.||+
T Consensus       188 l~i~~~eLl~d~~ek~i~~~ie~lw~l---~~~gg~lVi  223 (484)
T COG5459         188 LAIVLDELLPDGNEKPIQVNIERLWNL---LAPGGHLVI  223 (484)
T ss_pred             hhhhhhhhccccCcchHHHHHHHHHHh---ccCCCeEEE
Confidence            8875332      22233355566666   999999987

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.16  E-value=0.026  Score=50.02  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=64.0

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      +|+|+.||.|..+.-+....  -..+.++|+++.+++..+.|+..       .++++|..+..+...    ...+|+++.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~   68 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTG   68 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEe
Confidence            68999999999988877642  23589999999988887776642       256677766543210    257999997


Q ss_pred             cCCc------------cc-cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          202 DAEK------------RM-YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       202 d~~~------------~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +.+.            .+ ....+..+.++...++|. +++++||.
T Consensus        69 gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~  113 (275)
T cd00315          69 GFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPK-YFLLENVK  113 (275)
T ss_pred             CCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCC-EEEEEcCc
Confidence            6541            11 111222333333336777 88999984

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.029  Score=44.52  Aligned_cols=109  Identities=13%  Similarity=0.059  Sum_probs=76.5

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      +-+..++..++..+.+|+|+|.|.+.+..++..-  -.-+|+|++|-....++-..-.+|...+.+|..-|.-..  +  
T Consensus        62 ~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--d--  135 (199)
T KOG4058|consen   62 ENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--D--  135 (199)
T ss_pred             HHHHHHccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--c--
Confidence            3344555566778999999999999998887631  357899999988888887777788888888876665432  1  


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                          -..|..+.+.+.....++.-..+..-   +..|..++.
T Consensus       136 ----l~dy~~vviFgaes~m~dLe~KL~~E---~p~nt~vva  170 (199)
T KOG4058|consen  136 ----LRDYRNVVIFGAESVMPDLEDKLRTE---LPANTRVVA  170 (199)
T ss_pred             ----ccccceEEEeehHHHHhhhHHHHHhh---CcCCCeEEE
Confidence                24566666666655555555555534   667776665

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.06  E-value=0.019  Score=54.24  Aligned_cols=129  Identities=14%  Similarity=0.178  Sum_probs=75.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec--CccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER--DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~--s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ..-++|+|..+|.|+++..|...   ..-|.-|-.  .+..+..    +-..|+-.    +.-|.+|.++..     ..+
T Consensus       364 ~~iRNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~~~~ntL~v----IydRGLIG----~yhDWCE~fsTY-----PRT  427 (506)
T PF03141_consen  364 GRIRNVMDMNAGYGGFAAALIDD---PVWVMNVVPVSGPNTLPV----IYDRGLIG----VYHDWCEAFSTY-----PRT  427 (506)
T ss_pred             cceeeeeeecccccHHHHHhccC---CceEEEecccCCCCcchh----hhhcccch----hccchhhccCCC-----Ccc
Confidence            34568999999999999888752   222222221  2222222    22233321    222455554444     589


Q ss_pred             eeEEEEcCCc------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEE
Q 023411          196 YDFAFVDAEK------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM  269 (282)
Q Consensus       196 fDlV~id~~~------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (282)
                      ||+|-.++..      ......+-++-++   |||||.+++.|-.                .+-+-.+.+...=++++.+
T Consensus       428 YDLlHA~~lfs~~~~rC~~~~illEmDRI---LRP~G~~iiRD~~----------------~vl~~v~~i~~~lrW~~~~  488 (506)
T PF03141_consen  428 YDLLHADGLFSLYKDRCEMEDILLEMDRI---LRPGGWVIIRDTV----------------DVLEKVKKIAKSLRWEVRI  488 (506)
T ss_pred             hhheehhhhhhhhcccccHHHHHHHhHhh---cCCCceEEEeccH----------------HHHHHHHHHHHhCcceEEE
Confidence            9999877552      2344555666666   9999999996542                1122233344444777777


Q ss_pred             eecC------CceEEEEE
Q 023411          270 VPIG------DGMTICQK  281 (282)
Q Consensus       270 lp~~------~Gl~~~~k  281 (282)
                      ...-      .++++|+|
T Consensus       489 ~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  489 HDTEDGPDGPEKILICQK  506 (506)
T ss_pred             EecCCCCCCCceEEEEEC
Confidence            7654      45888886

; GO: 0008168 methyltransferase activity

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.77  E-value=0.1  Score=48.34  Aligned_cols=108  Identities=18%  Similarity=0.214  Sum_probs=67.4

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc-hhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~l~~~~  191 (282)
                      .....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++..   +. ..+.....+ ..+.+..+   .
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~---~  250 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALREL---T  250 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHH---c
Confidence            34456778999999987 888888998874 246999999998888777642   22 112222221 22222222   1


Q ss_pred             CCCceeEEEEcCCcc------------------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          192 EASSYDFAFVDAEKR------------------MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       192 ~~~~fDlV~id~~~~------------------~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ....+|+||-....+                  +....++.+.+.   ++++|.++.=.
T Consensus       251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~G~iv~~g  306 (386)
T cd08283         251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQA---VRKGGTVSIIG  306 (386)
T ss_pred             CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHH---hccCCEEEEEc
Confidence            134689887643211                  124456777787   99999887743

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.67  E-value=0.16  Score=42.99  Aligned_cols=107  Identities=16%  Similarity=0.151  Sum_probs=60.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCC-CEEEEEecCccHHHHHHHHHHHh------------------------------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA------------------------------  167 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~------------------------------  167 (282)
                      .+-++.|-.||+|+..-.+.---++. ..|++-|+++++++.|++|+...                              
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            55689999999999866555433222 57999999999999999885421                              


Q ss_pred             -----------CCCCcEEEEEcchhhHHH--HHHhCCCCCceeEEEEcCCc-------c-----ccHHHHHHHHHhhcCC
Q 023411          168 -----------GVSHKVKIKHGLAADSLK--ALILNGEASSYDFAFVDAEK-------R-----MYQEYFELLLQLLLQI  222 (282)
Q Consensus       168 -----------g~~~~v~~~~gd~~~~l~--~l~~~~~~~~fDlV~id~~~-------~-----~~~~~l~~~~~~~~~L  222 (282)
                                 |-.....+.+.|..+.-.  ... .  ....|+|+.|-+.       .     -...+++.+.+.   |
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~--~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~v---L  204 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-A--GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPV---L  204 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-T--T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCC---S
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-c--CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhh---C
Confidence                       111135677777766322  221 1  2346999998542       1     134466667666   9


Q ss_pred             CCCcEEEEe
Q 023411          223 RVGGIIVID  231 (282)
Q Consensus       223 kpgG~lv~d  231 (282)
                      ..++++++.
T Consensus       205 p~~sVV~v~  213 (246)
T PF11599_consen  205 PERSVVAVS  213 (246)
T ss_dssp             -TT-EEEEE
T ss_pred             CCCcEEEEe
Confidence            777888773

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.61  E-value=0.05  Score=41.84  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=60.4

Q ss_pred             cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcccc
Q 023411          129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY  208 (282)
Q Consensus       129 G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~  208 (282)
                      |.|..++.+++..+  ++|+++|.++...+.+++    .|..   .++..+..+..+.+.+......+|+||-....   
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---   68 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccccccceEEEEecCc---
Confidence            46888999999885  999999999987776654    3422   22332222233333222212489999976653   


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          209 QEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       209 ~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ...++...++   ++++|.+++=...
T Consensus        69 ~~~~~~~~~~---l~~~G~~v~vg~~   91 (130)
T PF00107_consen   69 GDTLQEAIKL---LRPGGRIVVVGVY   91 (130)
T ss_dssp             HHHHHHHHHH---EEEEEEEEEESST
T ss_pred             HHHHHHHHHH---hccCCEEEEEEcc
Confidence            3467788888   9999999885554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.19  E-value=0.26  Score=47.38  Aligned_cols=109  Identities=15%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE--Ec-------------chh
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HG-------------LAA  181 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~g-------------d~~  181 (282)
                      .++.+|+-+|+|. |..++..++.++  ++|+++|.+++.++.+++    .|... +.+-  ..             +..
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~-v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEF-LELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EEeccccccccccchhhhcchhHH
Confidence            4688999999994 777888888875  689999999998887766    23220 1110  00             110


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc--cHHH-HHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM--YQEY-FELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~--~~~~-l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +.......+. -..+|+||.......  .+.. .+...+.   +||||+++.=.+-..|
T Consensus       236 ~~~~~~~~~~-~~gaDVVIetag~pg~~aP~lit~~~v~~---mkpGgvIVdvg~~~GG  290 (509)
T PRK09424        236 KAEMALFAEQ-AKEVDIIITTALIPGKPAPKLITAEMVAS---MKPGSVIVDLAAENGG  290 (509)
T ss_pred             HHHHHHHHhc-cCCCCEEEECCCCCcccCcchHHHHHHHh---cCCCCEEEEEccCCCC
Confidence            1000110000 146899997765322  2233 4777787   9999998765443334

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.07  E-value=0.21  Score=43.37  Aligned_cols=105  Identities=16%  Similarity=0.201  Sum_probs=62.3

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-----CCCCcEEEEEcchhhH--HHHHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----GVSHKVKIKHGLAADS--LKALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----g~~~~v~~~~gd~~~~--l~~l~~~~  191 (282)
                      ...+|||+|+|+|..++.++...  .+.|+..|... ..+..+.+...+     .+...+.+..-+..+.  ....    
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~----  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR----  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence            46689999999998888777654  47888888743 444444432222     2222344433332221  1111    


Q ss_pred             CCCc-eeEEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          192 EASS-YDFAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       192 ~~~~-fDlV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                       .+. +|+|+...+   .+.+......+..+   |..+|++.+.--+
T Consensus       159 -~~~~~DlilasDvvy~~~~~e~Lv~tla~l---l~~~~~i~l~~~l  201 (248)
T KOG2793|consen  159 -LPNPFDLILASDVVYEEESFEGLVKTLAFL---LAKDGTIFLAYPL  201 (248)
T ss_pred             -cCCcccEEEEeeeeecCCcchhHHHHHHHH---HhcCCeEEEEEec
Confidence             234 899886433   44566677788888   8888866554333

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=94.99  E-value=0.18  Score=40.12  Aligned_cols=101  Identities=17%  Similarity=0.214  Sum_probs=54.0

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      .-|||+|-|.|..=-.+-+.+| +-+++.+|..-....   .     ...+.-.++.||+.+.++.+..-  ..+.-++-
T Consensus        30 G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp---~-----~~P~~~~~ilGdi~~tl~~~~~~--g~~a~laH   98 (160)
T PF12692_consen   30 GPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP---S-----STPPEEDLILGDIRETLPALARF--GAGAALAH   98 (160)
T ss_dssp             S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G---G-----G---GGGEEES-HHHHHHHHHHH---S-EEEEE
T ss_pred             CceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC---C-----CCCchHheeeccHHHHhHHHHhc--CCceEEEE
Confidence            5799999999998888999998 789999996422110   0     01222478999999988873222  24555666


Q ss_pred             EcCCccc---cHHHH----HHHHHhhcCCCCCcEEEEeCCCC
Q 023411          201 VDAEKRM---YQEYF----ELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       201 id~~~~~---~~~~l----~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      .|-...+   -....    ..+..+   |.|||++|-+..+.
T Consensus        99 aD~G~g~~~~d~a~a~~lspli~~~---la~gGi~vS~~pl~  137 (160)
T PF12692_consen   99 ADIGTGDKEKDDATAAWLSPLIAPV---LAPGGIMVSGQPLY  137 (160)
T ss_dssp             E----S-HHHHHHHHHHHHHHHGGG---EEEEEEEEESS---
T ss_pred             eecCCCCcchhHHHHHhhhHHHHHH---hcCCcEEEeCCccc
Confidence            6644222   11222    233455   99999999987765

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.95  E-value=0.041  Score=46.99  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=61.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEEcchh-hHHHHHHhCCCCCc
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAA-DSLKALILNGEASS  195 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~-~~l~~l~~~~~~~~  195 (282)
                      +.-++||||+|  .+.++=.-... -+-+++|.|+++..++.|+..+..+ ++...+++....-. .+++.+..  ..+.
T Consensus        78 ~~i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~  153 (292)
T COG3129          78 KNIRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNER  153 (292)
T ss_pred             CceEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--ccce
Confidence            34478999975  44444332222 1458999999999999999999988 77777777754322 23343321  1589


Q ss_pred             eeEEEEcCCccccHHHHHHH
Q 023411          196 YDFAFVDAEKRMYQEYFELL  215 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~  215 (282)
                      ||++.|+.+.+...+.+..-
T Consensus       154 yd~tlCNPPFh~s~~da~~g  173 (292)
T COG3129         154 YDATLCNPPFHDSAADARAG  173 (292)
T ss_pred             eeeEecCCCcchhHHHHHhc
Confidence            99999998866555444333

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=94.88  E-value=0.67  Score=40.68  Aligned_cols=110  Identities=12%  Similarity=0.157  Sum_probs=66.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--CCcEEEEEcchhhH-HHHHHhCC-CCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAADS-LKALILNG-EAS  194 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~~~-l~~l~~~~-~~~  194 (282)
                      ....|+.+|||.=.-...+  ..+.+.+++=+|. |+.++.-++.+...+.  ..+.+++..|..+. ...+...+ +.+
T Consensus        81 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~  157 (260)
T TIGR00027        81 GIRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT  157 (260)
T ss_pred             CCcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence            3557999999754333333  2333466777776 5677777777776543  45688999888643 33333222 122


Q ss_pred             ceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          195 SYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       195 ~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ..-++++.+.     .+.....+..+.+.   ..||+.|++|-+-
T Consensus       158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~---~~~gs~l~~d~~~  199 (260)
T TIGR00027       158 APTAWLWEGLLMYLTEEAVDALLAFIAEL---SAPGSRLAFDYVR  199 (260)
T ss_pred             CCeeeeecchhhcCCHHHHHHHHHHHHHh---CCCCcEEEEEecc
Confidence            3335555554     33455567777666   7799999998654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.81  E-value=0.094  Score=39.56  Aligned_cols=88  Identities=24%  Similarity=0.249  Sum_probs=56.1

Q ss_pred             ccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCceeEEEEcCC
Q 023411          128 VYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       128 ~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~fDlV~id~~  204 (282)
                      ||.|..+..+++.+.+++ .|+.+|.+++..+.+++.    +    +.++.||..+.  +...   + -.+.|.|++...
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a---~-i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA---G-IEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT---T-GGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc---C-ccccCEEEEccC
Confidence            667889999888876556 899999999886655432    2    67899998763  3322   1 468888888765


Q ss_pred             ccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          205 KRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       205 ~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .....-..-...+-   +.|...+++
T Consensus        72 ~d~~n~~~~~~~r~---~~~~~~ii~   94 (116)
T PF02254_consen   72 DDEENLLIALLARE---LNPDIRIIA   94 (116)
T ss_dssp             SHHHHHHHHHHHHH---HTTTSEEEE
T ss_pred             CHHHHHHHHHHHHH---HCCCCeEEE
Confidence            33322222222333   577777766

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.75  E-value=0.26  Score=44.74  Aligned_cols=99  Identities=20%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++++||-+|+| .|..+..+++... ..+|+++|.+++.++.+++    .|...-+.....+.    ......  .+.+
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~----~~~~~~--~g~~  236 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDL----DHYKAE--KGYF  236 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccH----HHHhcc--CCCC
Confidence            357789888875 3555666777653 2379999999988877664    34332111111122    111111  2468


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+||-.....   ..++.+.++   |++||.++.=..
T Consensus       237 D~vid~~G~~---~~~~~~~~~---l~~~G~iv~~G~  267 (343)
T PRK09880        237 DVSFEVSGHP---SSINTCLEV---TRAKGVMVQVGM  267 (343)
T ss_pred             CEEEECCCCH---HHHHHHHHH---hhcCCEEEEEcc
Confidence            9988554422   345667777   999999887543

>PRK13699 putative methylase; Provisional

Probab=94.73  E-value=0.055  Score=46.53  Aligned_cols=51  Identities=14%  Similarity=0.223  Sum_probs=38.0

Q ss_pred             EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc--------------c----cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--------------M----YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~--------------~----~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +++++||..+.+..++    ++++|+||.|++..              .    ....+.++.++   |||||.+++
T Consensus         2 ~~l~~gD~le~l~~lp----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RV---LKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRV---LKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHH---cCCCCEEEE
Confidence            4788999999888775    68999999997642              0    12345556666   999998875

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.56  E-value=0.22  Score=44.57  Aligned_cols=119  Identities=15%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      +++|+-||.|.+++-+..+.  --.+.++|+++.+.+.-+.|+.        ....+|+.+......    .+.+|+++.
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l----~~~~D~l~g   67 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL----PKDVDLLIG   67 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH----HHT-SEEEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc----cccceEEEe
Confidence            69999999999999888752  1368999999998888777764        778888887644322    125899886


Q ss_pred             cCCc---------------c--ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCC
Q 023411          202 DAEK---------------R--MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDER  264 (282)
Q Consensus       202 d~~~---------------~--~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (282)
                      ..+.               .  -+..+++.+..    ++|. +++++||-  |.+.     ......++.+.+.+.+- +
T Consensus        68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~----~~Pk-~~~~ENV~--~l~~-----~~~~~~~~~i~~~l~~l-G  134 (335)
T PF00145_consen   68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKE----LKPK-YFLLENVP--GLLS-----SKNGEVFKEILEELEEL-G  134 (335)
T ss_dssp             E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHH----HS-S-EEEEEEEG--GGGT-----GGGHHHHHHHHHHHHHT-T
T ss_pred             ccCCceEeccccccccccccchhhHHHHHHHhh----ccce-EEEecccc--eeec-----ccccccccccccccccc-c
Confidence            4320               1  13344444444    6885 78889983  2221     11123455566665443 5


Q ss_pred             eEE
Q 023411          265 VSI  267 (282)
Q Consensus       265 ~~~  267 (282)
                      |.+
T Consensus       135 Y~v  137 (335)
T PF00145_consen  135 YNV  137 (335)
T ss_dssp             EEE
T ss_pred             eee
Confidence            555

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=94.51  E-value=0.086  Score=46.86  Aligned_cols=53  Identities=25%  Similarity=0.382  Sum_probs=38.8

Q ss_pred             cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc---------------c----HHHHHHHHHhhcCCCCCcEEEEe
Q 023411          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------Y----QEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~---------------~----~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+++++|..+.+..+.    +++||+||+|++...               +    ...+..+.++   |||||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rv---LK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRV---LKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHH---hCCCcEEEEE
Confidence            35789999998776653    579999999976310               1    2355666666   9999999874

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.50  E-value=0.43  Score=42.63  Aligned_cols=100  Identities=22%  Similarity=0.333  Sum_probs=60.7

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++.+||..|+| .|..+..+++..  +.+|++++.+++..+.+++    .|....+.....+..+.+ ..   ....
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~---~~~~  231 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AA---GLGG  231 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HH---hcCC
Confidence            34567788888876 477777888876  4789999999887766543    344321111111121222 11   1146


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+|+++.....   ...++.+.+.   |+++|.++.-
T Consensus       232 ~~D~vid~~g~---~~~~~~~~~~---l~~~G~~v~~  262 (338)
T cd08254         232 GFDVIFDFVGT---QPTFEDAQKA---VKPGGRIVVV  262 (338)
T ss_pred             CceEEEECCCC---HHHHHHHHHH---hhcCCEEEEE
Confidence            79988754332   2346677787   9999998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.43  E-value=0.073  Score=41.29  Aligned_cols=83  Identities=22%  Similarity=0.320  Sum_probs=52.8

Q ss_pred             cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cc-cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCC
Q 023411          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM-YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVN  245 (282)
Q Consensus       172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~  245 (282)
                      .+++..||+.+.++.+     ...+|.||.|+..     +. ..++++.+.++   ++|||++..-.+-  |        
T Consensus        32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~---~~~~~~l~Tys~a--~--------   93 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARL---SKPGGTLATYSSA--G--------   93 (124)
T ss_dssp             EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHH---EEEEEEEEES--B--H--------
T ss_pred             EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHH---hCCCcEEEEeech--H--------
Confidence            4788899999998887     6899999999751     21 46688999998   9999998773321  1        


Q ss_pred             ChhhHHHHHHHHHhhhCCCeEEEEeec---CCceEEEEE
Q 023411          246 DAKTISIRNFNKNLMEDERVSISMVPI---GDGMTICQK  281 (282)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~lp~---~~Gl~~~~k  281 (282)
                           .+|.=+    ..-+|.+...|-   ...++.+.|
T Consensus        94 -----~Vr~~L----~~aGF~v~~~~g~g~Kr~~~~a~~  123 (124)
T PF05430_consen   94 -----AVRRAL----QQAGFEVEKVPGFGRKREMLRAVK  123 (124)
T ss_dssp             -----HHHHHH----HHCTEEEEEEE-STTSSEEEEEEC
T ss_pred             -----HHHHHH----HHcCCEEEEcCCCCCcchheEEEc
Confidence                 133322    245888887773   344555554

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.35  E-value=0.32  Score=44.15  Aligned_cols=94  Identities=18%  Similarity=0.098  Sum_probs=56.8

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++++||-+|+|. |..+..+++......+|+++|.+++.++.+++    .+.   . ...   .+. ..      ...+
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~---~~~-~~------~~g~  223 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLI---DDI-PE------DLAV  223 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eeh---hhh-hh------ccCC
Confidence            5678999999753 33445556542214689999999887777654    221   1 110   111 11      2358


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |+||-..........++...++   |++||.+++=.
T Consensus       224 d~viD~~G~~~~~~~~~~~~~~---l~~~G~iv~~G  256 (341)
T cd08237         224 DHAFECVGGRGSQSAINQIIDY---IRPQGTIGLMG  256 (341)
T ss_pred             cEEEECCCCCccHHHHHHHHHh---CcCCcEEEEEe
Confidence            9888544322234457777788   99999988643

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.29  E-value=0.13  Score=43.30  Aligned_cols=54  Identities=20%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411          106 DQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (282)
Q Consensus       106 ~~~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (282)
                      .-..++..++..  .+++.|||.-||+|..+....+ +  +-+.+|+|++++..+.|++
T Consensus       176 kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  176 KPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhccceeeehhhhccChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence            334455555543  5788999999999987776665 3  3479999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=94.28  E-value=0.15  Score=45.40  Aligned_cols=56  Identities=5%  Similarity=-0.006  Sum_probs=44.7

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH
Q 023411          108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  166 (282)
Q Consensus       108 ~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~  166 (282)
                      ..++..++..  .+++.|||--+|+|..++...+ +  +-+++|+|++++.++.|++++..
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            4566666654  5788999999999987766555 3  35899999999999999999864

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=94.08  E-value=0.056  Score=47.54  Aligned_cols=91  Identities=20%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .+..++|+|||.|-.+.     ..+.+.++++|++...+..+++.       +......+|+......      +.+||.
T Consensus        45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~------~~s~d~  106 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFR------EESFDA  106 (293)
T ss_pred             CcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCC------CCcccc
Confidence            35678999999996532     11357899999998877655531       2125666777654322      689999


Q ss_pred             EEEcCCccc------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVDAEKRM------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id~~~~~------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++.-+..++      ....++.+.+.   |+|||-..+
T Consensus       107 ~lsiavihhlsT~~RR~~~l~e~~r~---lrpgg~~lv  141 (293)
T KOG1331|consen  107 ALSIAVIHHLSTRERRERALEELLRV---LRPGGNALV  141 (293)
T ss_pred             chhhhhhhhhhhHHHHHHHHHHHHHH---hcCCCceEE
Confidence            876655433      34466777777   999998766

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=93.87  E-value=0.18  Score=48.77  Aligned_cols=102  Identities=11%  Similarity=0.135  Sum_probs=63.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh-----HHHHHHhCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-----SLKALILNG  191 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~-----~l~~l~~~~  191 (282)
                      +.++..|||+||..|+|....++.+|.++-|+|||+-|--           .+.+ +..++.|+..     .+.....  
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~~-c~t~v~dIttd~cr~~l~k~l~--  107 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIPN-CDTLVEDITTDECRSKLRKILK--  107 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCCc-cchhhhhhhHHHHHHHHHHHHH--
Confidence            3467789999999999999999999988899999997631           1222 3333333321     1122221  


Q ss_pred             CCCceeEEEEcCCccc--------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          192 EASSYDFAFVDAEKRM--------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~--------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                       ..+.|+|+.|+.+.-              ....+......   |+.||. +++.++.+.
T Consensus       108 -t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~---l~~~g~-fvtkvfrs~  162 (780)
T KOG1098|consen  108 -TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEF---LAKGGT-FVTKVFRSE  162 (780)
T ss_pred             -hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHH---HHhcCc-cccccccCC
Confidence             356699999876321              11223344444   899999 555565443

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.83  E-value=0.28  Score=44.68  Aligned_cols=49  Identities=16%  Similarity=0.104  Sum_probs=40.1

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC-------CCCEEEEEecCccHHHHHHHHHHHhC
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP-------ESGCLVACERDARSLEVAKKYYERAG  168 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~-------~~~~v~~iD~s~~~~~~a~~~~~~~g  168 (282)
                      +-.++|||.|+|....-+++.+.       ...++.-||+|++..+.-++.++...
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            45799999999999988887651       14789999999999988888887543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.82  E-value=0.38  Score=46.30  Aligned_cols=42  Identities=14%  Similarity=0.196  Sum_probs=32.9

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (282)
                      ++.+|+-+|+|. |..+..+++.++  +.|+.+|.+++.++.+++
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~  205 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS  205 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            567999999984 566777777764  789999999987766654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.73  E-value=0.95  Score=41.25  Aligned_cols=101  Identities=13%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCC
Q 023411          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG  191 (282)
Q Consensus       115 ~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~  191 (282)
                      ....++++||=.|+  |.|..+..+++..  +.++++++.+++..+.+++.   .|...-+..... +..+.+...   .
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---~  225 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRY---F  225 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHH---C
Confidence            44567889998887  3677788888876  47899999888766555422   344321221111 222222222   1


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                       .+.+|+||-... .   ..+..+.++   |++||.+++=
T Consensus       226 -~~gvD~v~d~vG-~---~~~~~~~~~---l~~~G~iv~~  257 (348)
T PLN03154        226 -PEGIDIYFDNVG-G---DMLDAALLN---MKIHGRIAVC  257 (348)
T ss_pred             -CCCcEEEEECCC-H---HHHHHHHHH---hccCCEEEEE
Confidence             246898884333 2   246677777   9999998863

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.63  E-value=0.71  Score=42.38  Aligned_cols=101  Identities=24%  Similarity=0.307  Sum_probs=59.0

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-.|+| .|..+..+++..  +. +|+++|.+++..+.+++    .|...-+.....+..+.+..+.    .
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~----~  257 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT----G  257 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh----C
Confidence            34567888888875 244556666655  35 69999999988777654    3443211211112222222221    2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +.+|+||-....   ...+....++   ++++|.++.-.
T Consensus       258 ~g~d~vid~~G~---~~~~~~~~~~---l~~~G~iv~~G  290 (371)
T cd08281         258 GGVDYAFEMAGS---VPALETAYEI---TRRGGTTVTAG  290 (371)
T ss_pred             CCCCEEEECCCC---hHHHHHHHHH---HhcCCEEEEEc
Confidence            368988854332   2345666777   99999887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.58  E-value=0.3  Score=44.74  Aligned_cols=53  Identities=23%  Similarity=0.306  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (282)
                      .+++..+....+.+.|+|+|+|-|+.+..++-..  +-.|.+||-|....+.|++
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            4556666777888999999999999999998765  4789999999766555543

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=93.52  E-value=0.19  Score=40.08  Aligned_cols=44  Identities=20%  Similarity=0.215  Sum_probs=29.3

Q ss_pred             EEccccc--HHHHHHH-HHCCCCCEEEEEecCccHHHHHHHH--HHHhC
Q 023411          125 EVGVYTG--YSSLAIA-LVLPESGCLVACERDARSLEVAKKY--YERAG  168 (282)
Q Consensus       125 EIG~G~G--~~t~~la-~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~g  168 (282)
                      |||++.|  ..+.+++ +...++++|+++|++|...+..+++  +..++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~   49 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND   49 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence            8999999  6666664 2344478999999999999999888  55543

; PDB: 2PY6_A.

>PRK13699 putative methylase; Provisional

Probab=93.26  E-value=0.32  Score=41.83  Aligned_cols=56  Identities=9%  Similarity=0.000  Sum_probs=43.4

Q ss_pred             HHHHHHHh--hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh
Q 023411          109 QLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  167 (282)
Q Consensus       109 ~ll~~l~~--~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~  167 (282)
                      .++..++.  ..+++.|||--||+|..+....+.   +-+++|+|++++..+.+.++++..
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            34555543  357889999999999877766653   358999999999999999988753

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.26  E-value=0.87  Score=41.37  Aligned_cols=107  Identities=21%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++.+|+-+|+|. |..+..+++..  +.+++++|.+++.++.+++    .|...-+.....+..+....+.......
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~  236 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKAR  236 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccC
Confidence            445678999999864 66667777776  4689999999988776654    3443212211111112222221111123


Q ss_pred             cee----EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          195 SYD----FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       195 ~fD----lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .+|    +|| |..-.  ...++...++   |++||.+++=...
T Consensus       237 g~d~~~d~v~-d~~g~--~~~~~~~~~~---l~~~G~iv~~G~~  274 (349)
T TIGR03201       237 GLRSTGWKIF-ECSGS--KPGQESALSL---LSHGGTLVVVGYT  274 (349)
T ss_pred             CCCCCcCEEE-ECCCC--hHHHHHHHHH---HhcCCeEEEECcC
Confidence            455    444 44422  2345566777   9999998875543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.23  E-value=0.23  Score=43.29  Aligned_cols=47  Identities=19%  Similarity=0.077  Sum_probs=37.8

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCC-------CCEEEEEecCccHHHHHHHHHHH
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYER  166 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~  166 (282)
                      +-+|+|+|+|+|..+..+++.+..       ..+++-||+||.+.+..++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            469999999999999999987753       25899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.21  E-value=0.11  Score=47.45  Aligned_cols=82  Identities=24%  Similarity=0.283  Sum_probs=68.8

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      +.+.....-+..+++...++..|+|+.|..|..|..++..+...++++|+|.+++..+..++.+..+|.+. ++...+|+
T Consensus       195 ~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df  273 (413)
T KOG2360|consen  195 FILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDF  273 (413)
T ss_pred             eEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccc
Confidence            34445555566777777888999999999999999999988767999999999999999999999999875 77778888


Q ss_pred             hhH
Q 023411          181 ADS  183 (282)
Q Consensus       181 ~~~  183 (282)
                      ...
T Consensus       274 ~~t  276 (413)
T KOG2360|consen  274 LNT  276 (413)
T ss_pred             cCC
Confidence            763

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.20  E-value=1.2  Score=40.69  Aligned_cols=103  Identities=19%  Similarity=0.266  Sum_probs=60.0

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-.|+| .|..++.+++..  +. +|+++|.+++..+.+++    .|.+.-+.....+..+.+...   ...
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~---~~~  243 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRAL---TGG  243 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHH---hCC
Confidence            44577899988875 244556677765  35 59999999887777643    343221222222222222222   112


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+|+||-....   ...+....+.   +++||.+++=..
T Consensus       244 ~g~d~vid~~g~---~~~~~~~~~~---~~~~G~iv~~G~  277 (358)
T TIGR03451       244 FGADVVIDAVGR---PETYKQAFYA---RDLAGTVVLVGV  277 (358)
T ss_pred             CCCCEEEECCCC---HHHHHHHHHH---hccCCEEEEECC
Confidence            468988743332   2335566677   999999887443

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=92.94  E-value=0.42  Score=42.77  Aligned_cols=104  Identities=17%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE---------------------------
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV---------------------------  173 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v---------------------------  173 (282)
                      -+||-=|||.|..+..++....   .+-|=|.|--|+=...=.+....+++.+                           
T Consensus       152 i~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~  228 (369)
T KOG2798|consen  152 IRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI  228 (369)
T ss_pred             ceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence            4789999999999999997532   3333355544432222122111122222                           


Q ss_pred             ------------EEEEcchhhHHHHHHhCCCCCceeEEE----EcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          174 ------------KIKHGLAADSLKALILNGEASSYDFAF----VDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       174 ------------~~~~gd~~~~l~~l~~~~~~~~fDlV~----id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                                  .+..||+.+..+.-   ...+.||+|+    +|.. ++..+|++.+.++   |+|||+.|==..+
T Consensus       229 ~p~~~~~~~~~fsicaGDF~evy~~s---~~~~~~d~VvTcfFIDTa-~NileYi~tI~~i---Lk~GGvWiNlGPL  298 (369)
T KOG2798|consen  229 HPASSNGNTGSFSICAGDFLEVYGTS---SGAGSYDVVVTCFFIDTA-HNILEYIDTIYKI---LKPGGVWINLGPL  298 (369)
T ss_pred             cccccCCCCCCccccccceeEEecCc---CCCCccceEEEEEEeech-HHHHHHHHHHHHh---ccCCcEEEeccce
Confidence                        22224443332210   0124789885    3433 5677889999999   9999988754443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=92.86  E-value=1.1  Score=40.15  Aligned_cols=95  Identities=13%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             CCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       120 ~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +.+|.-||-| .|..+..+|-.+  ++.|+-+|+|.+.+......+.     .|++....+...+....      .+.|+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v------~~aDl  234 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAV------KKADL  234 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHh------hhccE
Confidence            3466778877 477788888766  4899999999998877666553     46777776665544433      67888


Q ss_pred             EEEc---CCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVD---AEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id---~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++--   .......-..++..+.   +|||++||=
T Consensus       235 vIgaVLIpgakaPkLvt~e~vk~---MkpGsVivD  266 (371)
T COG0686         235 VIGAVLIPGAKAPKLVTREMVKQ---MKPGSVIVD  266 (371)
T ss_pred             EEEEEEecCCCCceehhHHHHHh---cCCCcEEEE
Confidence            7632   2222223345555555   899988763

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.86  E-value=1.2  Score=41.13  Aligned_cols=105  Identities=11%  Similarity=0.247  Sum_probs=60.4

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC------C-
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E-  192 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~------~-  192 (282)
                      .+|--||-  ||.++.+|-.+.. +.+|+|+|+++..++..+.     |   +..+..-+..+.+......+      + 
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence            45666665  5666665555432 4689999999987654332     2   23333333333233332221      1 


Q ss_pred             --CCceeEEEEcCC-------ccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          193 --ASSYDFAFVDAE-------KRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       193 --~~~fDlV~id~~-------~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                        -..-|++++.-+       ..+   ..+..+.+.+.   |++|-+++++...++|+
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~---L~kG~LVIlEST~~PGT  134 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPV---LKKGDLVILESTTPPGT  134 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHh---cCCCCEEEEecCCCCCc
Confidence              125577665422       112   23344555566   99999999999999998

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.70  E-value=1.6  Score=37.36  Aligned_cols=98  Identities=21%  Similarity=0.266  Sum_probs=59.2

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++.+||..|+|. |..+..+++..  +.++++++.+++..+.+++    .+...-+.....+..   ..+. ......+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~---~~~~-~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLE---EELR-LTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHH---HHHH-HhcCCCC
Confidence            5678999999885 66677777765  4789999998876665543    232211111111121   1111 1114679


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+++......   .....+.+.   |+++|.++.-
T Consensus       203 d~vi~~~~~~---~~~~~~~~~---l~~~G~~v~~  231 (271)
T cd05188         203 DVVIDAVGGP---ETLAQALRL---LRPGGRIVVV  231 (271)
T ss_pred             CEEEECCCCH---HHHHHHHHh---cccCCEEEEE
Confidence            9998654421   235566677   9999988863

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PTZ00357 methyltransferase; Provisional

Probab=92.49  E-value=0.67  Score=45.79  Aligned_cols=103  Identities=11%  Similarity=0.079  Sum_probs=64.1

Q ss_pred             EEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHH-hCC-------CCcEEEEEcchhhHHHHHHhC
Q 023411          122 RCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYER-AGV-------SHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~-~g~-------~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      .|+-+|+|.|-..-...++.   ....+|++||.++..+.....+... ...       .++|+++..|..++.......
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            58889999999865554443   3346899999998765555444321 122       346999999998863211000


Q ss_pred             -----CCCCceeEEEEc-----CCccccHHHHHHHHHhhcCCCC----CcE
Q 023411          191 -----GEASSYDFAFVD-----AEKRMYQEYFELLLQLLLQIRV----GGI  227 (282)
Q Consensus       191 -----~~~~~fDlV~id-----~~~~~~~~~l~~~~~~~~~Lkp----gG~  227 (282)
                           ..-+++|+|+..     ++.+-.++=++-+.+.   ||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrf---LKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQ---LEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHh---hhhhcccccc
Confidence                 001479999853     3344445556666666   765    665

>PLN02740 Alcohol dehydrogenase-like

Probab=92.33  E-value=1.8  Score=39.95  Aligned_cols=101  Identities=14%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEE--cchhhHHHHHHhC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILN  190 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~l~~~  190 (282)
                      ....++++||-+|+| .|..+..+++..  +. +|+++|.+++.++.+++    .|...-+....  .+..+.+..+.  
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--  265 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT--  265 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh--
Confidence            445678899999875 244555666665  35 69999999988777754    34432122111  11222222221  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEe
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~d  231 (282)
                        .+.+|+||-.....   ..+.....+   +++| |.+++=
T Consensus       266 --~~g~dvvid~~G~~---~~~~~a~~~---~~~g~G~~v~~  299 (381)
T PLN02740        266 --GGGVDYSFECAGNV---EVLREAFLS---THDGWGLTVLL  299 (381)
T ss_pred             --CCCCCEEEECCCCh---HHHHHHHHh---hhcCCCEEEEE
Confidence              23699887544422   345566667   8886 877663

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.26  E-value=0.95  Score=35.05  Aligned_cols=87  Identities=10%  Similarity=-0.005  Sum_probs=46.2

Q ss_pred             HHHHhhcCCCEEEEEcccccHHH-HHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          112 AMLVQILGAQRCIEVGVYTGYSS-LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       112 ~~l~~~~~~~~VLEIG~G~G~~t-~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      ..+++.....+|+|+|.|.=.-. ..|.++   +..|+++|+++.       ...     ..+.++.-|..+--..+   
T Consensus         6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i---   67 (127)
T PF03686_consen    6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI---   67 (127)
T ss_dssp             HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred             HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH---
Confidence            34455556679999999875543 344443   479999999987       111     23677888877633233   


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHh
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQL  218 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~  218 (282)
                        =...|+|+.-.++.+....+-.+.+.
T Consensus        68 --Y~~a~lIYSiRPP~El~~~il~lA~~   93 (127)
T PF03686_consen   68 --YEGADLIYSIRPPPELQPPILELAKK   93 (127)
T ss_dssp             --HTTEEEEEEES--TTSHHHHHHHHHH
T ss_pred             --hcCCcEEEEeCCChHHhHHHHHHHHH
Confidence              25789999877766666555555543

; PDB: 2K4M_A.

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=92.25  E-value=1.7  Score=37.84  Aligned_cols=110  Identities=19%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      .++..+...++... +..-.|+=.++..++   .+.-+++.+|+.++-.+..++++..   ..++++.+.|..+.+..+.
T Consensus        48 ~yl~~v~~~n~~~~-l~~YPGSP~ia~~ll---R~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~all  120 (245)
T PF04378_consen   48 PYLDAVRALNPDGE-LRFYPGSPAIAARLL---REQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALL  120 (245)
T ss_dssp             HHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-
T ss_pred             HHHHHHHHhccCCC-cCcCCCCHHHHHHhC---CccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhC
Confidence            34444433333323 445555544544444   3457999999999999888888764   3479999999998766654


Q ss_pred             hCCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCC--CCcEEEE
Q 023411          189 LNGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIR--VGGIIVI  230 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~Lk--pgG~lv~  230 (282)
                      ..  ..+=-+|+||.+.+   ++....+.+...   ++  +.|++++
T Consensus       121 PP--~~rRglVLIDPpYE~~~dy~~v~~~l~~a---~kR~~~G~~~i  162 (245)
T PF04378_consen  121 PP--PERRGLVLIDPPYEQKDDYQRVVDALAKA---LKRWPTGVYAI  162 (245)
T ss_dssp             S---TTS-EEEEE-----STTHHHHHHHHHHHH---HHH-TTSEEEE
T ss_pred             CC--CCCCeEEEECCCCCCchHHHHHHHHHHHH---HHhcCCcEEEE
Confidence            32  24456999999744   444444444333   22  5676655

; PDB: 2OO3_A.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=92.24  E-value=2.1  Score=38.11  Aligned_cols=100  Identities=15%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             HHhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      .....++.+||=.|.  +.|..+..+++..  +.++++++.+++..+.+++    .|...-+.....+..+.+...   .
T Consensus       138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---~  208 (329)
T cd08294         138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA---A  208 (329)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH---C
Confidence            344567788988874  4666777788876  4789999988876666544    354321221112222222222   1


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                       ...+|+||-... .   ..++...++   |+++|.++.
T Consensus       209 -~~gvd~vld~~g-~---~~~~~~~~~---l~~~G~iv~  239 (329)
T cd08294         209 -PDGIDCYFDNVG-G---EFSSTVLSH---MNDFGRVAV  239 (329)
T ss_pred             -CCCcEEEEECCC-H---HHHHHHHHh---hccCCEEEE
Confidence             256898884322 2   345677777   999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=92.12  E-value=0.71  Score=41.69  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=60.2

Q ss_pred             EEEEcccccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          123 CIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      |+|+.||.|..+.-+-++   +.+ +.++|+++.+.+.-+.|+.     +  .++++|..+.....     -..+|+++.
T Consensus         1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEe
Confidence            689999999999888764   344 6789999988877776653     2  44567877654321     245898875


Q ss_pred             cCC------------ccc-cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          202 DAE------------KRM-YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       202 d~~------------~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ..+            ..+ ....+....++...++|. +++++||-
T Consensus        66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~-~~v~ENV~  110 (315)
T TIGR00675        66 GFPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK-FFLLENVK  110 (315)
T ss_pred             cCCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCC-EEEeeccH
Confidence            432            011 112222333332226775 88999984

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.82  E-value=3.1  Score=37.19  Aligned_cols=101  Identities=18%  Similarity=0.178  Sum_probs=61.1

Q ss_pred             HHhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhC
Q 023411          114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN  190 (282)
Q Consensus       114 l~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~  190 (282)
                      .....++.+||=.|.  +.|..+..+++..  +.++++++.+++..+.+++    .|.+.-+..... +..+.....   
T Consensus       133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~---  203 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA---  203 (325)
T ss_pred             HhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh---
Confidence            345567889988884  4677777888875  4789999988876665543    454321221111 122222222   


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      . .+.+|+||- ....   ..+....++   |+++|.++.-
T Consensus       204 ~-~~gvdvv~d-~~G~---~~~~~~~~~---l~~~G~iv~~  236 (325)
T TIGR02825       204 S-PDGYDCYFD-NVGG---EFSNTVIGQ---MKKFGRIAIC  236 (325)
T ss_pred             C-CCCeEEEEE-CCCH---HHHHHHHHH---hCcCcEEEEe
Confidence            1 346998884 3322   235677788   9999999863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08293 PTGR2 Prostaglandin reductase

Probab=91.80  E-value=2.1  Score=38.45  Aligned_cols=94  Identities=16%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             CEEEEEcc--cccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          121 QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       121 ~~VLEIG~--G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++||=.|+  |.|..++.+++..  +. +|++++.+++..+.+++.   .|.+.-+.....+..+.+..+   . ...+|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~---~-~~gvd  226 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL---C-PEGVD  226 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH---C-CCCce
Confidence            78988885  4677778888876  45 799999888766555443   354321221112222222222   1 25799


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +||- .....   .+....++   |+++|.++.
T Consensus       227 ~vid-~~g~~---~~~~~~~~---l~~~G~iv~  252 (345)
T cd08293         227 VYFD-NVGGE---ISDTVISQ---MNENSHIIL  252 (345)
T ss_pred             EEEE-CCCcH---HHHHHHHH---hccCCEEEE
Confidence            9884 33221   24667777   999998885

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=91.75  E-value=1.9  Score=38.64  Aligned_cols=108  Identities=15%  Similarity=0.162  Sum_probs=69.6

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--CCcEEEEEcchh-h-HHHHHHhCC-CCC
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAA-D-SLKALILNG-EAS  194 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~-~-~l~~l~~~~-~~~  194 (282)
                      ...|+-+|||-  .|...---.+++.+|+-+|. |+.++.=++.+...+.  ..+++++..|.. + +...+.+.| +..
T Consensus        93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            67899999964  44332222343578888887 7888887788887663  246899999987 3 445555433 223


Q ss_pred             ceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .-=++++.+.     .+....++..+..+   ..||..++++-.
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~---~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAAL---SAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHh---CCCCceEEEecc
Confidence            3345555554     34456678888887   777777776643

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=91.74  E-value=2.9  Score=37.61  Aligned_cols=101  Identities=13%  Similarity=0.126  Sum_probs=61.7

Q ss_pred             HHhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhC
Q 023411          114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN  190 (282)
Q Consensus       114 l~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~  190 (282)
                      .....++++||=.|+  |.|..+..+++..  +.++++++.+++..+.+++.   .|...-+..... +..+.+...   
T Consensus       146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---  217 (338)
T cd08295         146 VCKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY---  217 (338)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh---
Confidence            344567889998886  4666777788876  47899998888766665542   344321221111 222222222   


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      . ...+|+||-... .   ..+....++   |+++|.++.
T Consensus       218 ~-~~gvd~v~d~~g-~---~~~~~~~~~---l~~~G~iv~  249 (338)
T cd08295         218 F-PNGIDIYFDNVG-G---KMLDAVLLN---MNLHGRIAA  249 (338)
T ss_pred             C-CCCcEEEEECCC-H---HHHHHHHHH---hccCcEEEE
Confidence            1 257999884332 2   346677787   999999875

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.70  E-value=1.2  Score=40.43  Aligned_cols=97  Identities=20%  Similarity=0.185  Sum_probs=64.1

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC-ceeEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDFA  199 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~-~fDlV  199 (282)
                      .+++|+-||.|...+-+..+.  ---+.++|+++.+++.-+.++..      ..+++.|..+......    .. .+|++
T Consensus         4 ~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~Dvl   71 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDVL   71 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCEE
Confidence            489999999999998777653  13589999999988777766642      4566667665433221    12 78888


Q ss_pred             EEcCCc--------c---------ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          200 FVDAEK--------R---------MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       200 ~id~~~--------~---------~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +-..+.        .         -+..+.+.+..    ++| -++|++||-
T Consensus        72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~----~~P-~~fv~ENV~  118 (328)
T COG0270          72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQ----LRP-KFFVLENVK  118 (328)
T ss_pred             EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHh----hCC-CEEEEecCc
Confidence            754331        1         02334444443    688 799999984

>PLN02827 Alcohol dehydrogenase-like

Probab=91.64  E-value=2.2  Score=39.39  Aligned_cols=102  Identities=17%  Similarity=0.177  Sum_probs=57.8

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE--cchhhHHHHHHhCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~l~~~~  191 (282)
                      ....++++||-.|+| .|..++.+++..+ ...|+++|.+++..+.+++    .|...-+....  .+..+.+..+.   
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~---  260 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT---  260 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh---
Confidence            345678899988874 2444555666653 2368899988887666543    35432111111  11222222221   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEe
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVID  231 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~d  231 (282)
                       .+.+|+||-.....   ..+....++   +++| |.+++-
T Consensus       261 -~~g~d~vid~~G~~---~~~~~~l~~---l~~g~G~iv~~  294 (378)
T PLN02827        261 -GGGADYSFECVGDT---GIATTALQS---CSDGWGLTVTL  294 (378)
T ss_pred             -CCCCCEEEECCCCh---HHHHHHHHh---hccCCCEEEEE
Confidence             23689888543322   235566777   8998 998763

>PRK08114 cystathionine beta-lyase; Provisional

Probab=91.61  E-value=4.8  Score=37.58  Aligned_cols=133  Identities=13%  Similarity=0.167  Sum_probs=77.9

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEe-cCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD-~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      -+|....+-..++..-.+...+-+.+|++.+...+...+.++.+|+..+ .........++.+++.|+.  ++++...-.
T Consensus        60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~--v~~vd~~d~  137 (395)
T PRK08114         60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT--TTWFDPLIG  137 (395)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--EEEECCCCH
Confidence            4566666666777777777888899988888766665566567777654 2234445555666666653  565543222


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD  241 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~  241 (282)
                      +.+....    ...-.+|++......  ....++.+.++++-..+|-.+++||..-.+...+
T Consensus       138 ~~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~  195 (395)
T PRK08114        138 ADIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFK  195 (395)
T ss_pred             HHHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccC
Confidence            3333332    234578998765221  1223445555411123456889999976665433

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=91.60  E-value=0.32  Score=43.58  Aligned_cols=79  Identities=23%  Similarity=0.280  Sum_probs=55.0

Q ss_pred             EEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHHhCCCCCceeEEEE
Q 023411          124 IEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEASSYDFAFV  201 (282)
Q Consensus       124 LEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~l~~~~~~~~fDlV~i  201 (282)
                      +|||+  |.+.++.+.... .+-..+++|+++.....|++++.++++++++.+++....+. +.+......+..||++.+
T Consensus       107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc  184 (419)
T KOG2912|consen  107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC  184 (419)
T ss_pred             eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence            67775  667776655432 23468999999999999999999999999999988765432 232221111346888887


Q ss_pred             cCC
Q 023411          202 DAE  204 (282)
Q Consensus       202 d~~  204 (282)
                      +.+
T Consensus       185 NPP  187 (419)
T KOG2912|consen  185 NPP  187 (419)
T ss_pred             CCc
Confidence            765

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=91.54  E-value=2.1  Score=38.72  Aligned_cols=103  Identities=15%  Similarity=0.217  Sum_probs=58.6

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-.|+| .|..+..+++...  .+ |++++.+++..+.+++    .|...-+.....+ .+.+....   ..
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~---~~  226 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVALG--AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL---RE  226 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---cC
Confidence            34567899988875 3445566676653  54 7899988887766543    3432111111112 12122221   13


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+|.+++|..-.  ...+....++   |++||.+++=..
T Consensus       227 ~~~d~~v~d~~G~--~~~~~~~~~~---l~~~G~iv~~G~  261 (347)
T PRK10309        227 LRFDQLILETAGV--PQTVELAIEI---AGPRAQLALVGT  261 (347)
T ss_pred             CCCCeEEEECCCC--HHHHHHHHHH---hhcCCEEEEEcc
Confidence            4688555665532  2346667787   999999887543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=91.53  E-value=4.2  Score=33.66  Aligned_cols=102  Identities=16%  Similarity=0.284  Sum_probs=53.5

Q ss_pred             EEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHH------------HHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~------------~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      +|--||.|  +.++.+|..+.. +.+|+++|++++.++..++-            +++.....+.++. .|..+..    
T Consensus         2 ~I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence            45566664  444444443322 46999999999876655421            1111111233332 1222211    


Q ss_pred             hCCCCCceeEEEEcCC----------ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~----------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                           ...|++|+.-+          ........+.+.+.   ++++.++|+.....+|.
T Consensus        75 -----~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~---l~~~~lvV~~STvppGt  126 (185)
T PF03721_consen   75 -----KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPV---LRPGDLVVIESTVPPGT  126 (185)
T ss_dssp             -----HH-SEEEE----EBETTTSBETHHHHHHHHHHHHH---HCSCEEEEESSSSSTTH
T ss_pred             -----hccceEEEecCCCccccCCccHHHHHHHHHHHHHH---HhhcceEEEccEEEEee
Confidence                 35688887533          11234456666666   99999999999999997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=91.51  E-value=2.9  Score=37.92  Aligned_cols=102  Identities=17%  Similarity=0.233  Sum_probs=64.0

Q ss_pred             HHhhcCCCEEEEEccc--ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      ..+..++++||-.|..  -|.+++.||++..  +.++++--+++-.+    .++..|-+.-+.+...|..+...++.   
T Consensus       137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t---  207 (326)
T COG0604         137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELT---  207 (326)
T ss_pred             hcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHc---
Confidence            3445678899998843  5667788998874  46666666665433    44455655445556666555554442   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ....+|+||-.....    .+......   |+++|.++.=
T Consensus       208 ~g~gvDvv~D~vG~~----~~~~~l~~---l~~~G~lv~i  240 (326)
T COG0604         208 GGKGVDVVLDTVGGD----TFAASLAA---LAPGGRLVSI  240 (326)
T ss_pred             CCCCceEEEECCCHH----HHHHHHHH---hccCCEEEEE
Confidence            124799998654433    34456666   8999988773

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=91.36  E-value=0.13  Score=47.61  Aligned_cols=65  Identities=18%  Similarity=0.054  Sum_probs=57.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc-EEEEEcchhhHHH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK  185 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~  185 (282)
                      +++..|-|+.||.|-+++-++..   +++|++-|.+++++++.+.+++.+.+.+. +.++..|+.+++.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            46778999999999999888864   58999999999999999999999888766 8999999887763

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=91.06  E-value=3.7  Score=37.65  Aligned_cols=102  Identities=17%  Similarity=0.215  Sum_probs=59.1

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEE--cchhhHHHHHHhC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILN  190 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~l~~~  190 (282)
                      ....++++||-+|+| .|..++.+|+..+  + +|+++|.+++..+.+++    .|...-+....  .+..+.+..+.  
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G--~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--  252 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK--ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT--  252 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh--
Confidence            345677899988875 3555666777663  5 79999999987777654    34432121111  11112222221  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeC
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDN  232 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd  232 (282)
                        .+.+|+||-....   ...+....++   +++| |.++.=.
T Consensus       253 --~~g~d~vid~~G~---~~~~~~~~~~---~~~~~G~~v~~g  287 (368)
T TIGR02818       253 --DGGVDYSFECIGN---VNVMRAALEC---CHKGWGESIIIG  287 (368)
T ss_pred             --CCCCCEEEECCCC---HHHHHHHHHH---hhcCCCeEEEEe
Confidence              2368988754332   2345566677   8886 8776533

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=91.04  E-value=9.9  Score=33.11  Aligned_cols=118  Identities=14%  Similarity=0.147  Sum_probs=78.1

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +......++..+-..+++.. |..-+|+-..+..+.+.   .-++..+|+.|+-....+.++.   -..++++.++|...
T Consensus        73 lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~  145 (279)
T COG2961          73 LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFL  145 (279)
T ss_pred             chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHH
Confidence            44555566666666666655 77788877766666653   4689999999999988888887   34579999999877


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .+......  .++=-+|+||.+.+.   |....+.+.+..+-- ++|+..+
T Consensus       146 ~l~a~LPP--~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf-~~g~yai  193 (279)
T COG2961         146 ALKAHLPP--KERRGLVLIDPPFELKDEYQRVVEALAEAYKRF-ATGTYAI  193 (279)
T ss_pred             HHhhhCCC--CCcceEEEeCCCcccccHHHHHHHHHHHHHHhh-cCceEEE
Confidence            65443322  345579999998543   444444444331112 5566555

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.97  E-value=2.8  Score=37.63  Aligned_cols=100  Identities=20%  Similarity=0.275  Sum_probs=57.1

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||=+|+| .|..+..+++..+  .+ |++++.+++..+.+++    .|...-+.....+ .+.+..+.   ..
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~---~~  229 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT---SG  229 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh---CC
Confidence            44567899888864 2444555666653  56 9999998887666543    3443211211112 12222221   12


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+|+||-.....   ..+....++   |+++|.+++=
T Consensus       230 ~~~d~vid~~g~~---~~~~~~~~~---l~~~G~~v~~  261 (339)
T cd08239         230 AGADVAIECSGNT---AARRLALEA---VRPWGRLVLV  261 (339)
T ss_pred             CCCCEEEECCCCH---HHHHHHHHH---hhcCCEEEEE
Confidence            4799988544322   234556677   9999988863

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=90.83  E-value=2.2  Score=37.72  Aligned_cols=78  Identities=17%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             CCCEEEEEcccccHHHHHH-HHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYTGYSSLAI-ALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~l-a~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.|+-+|-- -..++.+ +..+|  .++..+|+++..+...++..++.|+.+ ++.+.-|....+|+-.    ..+||
T Consensus       152 ~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~----~~kFD  223 (354)
T COG1568         152 EGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDL----KRKFD  223 (354)
T ss_pred             CCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHH----HhhCC
Confidence            56789999943 3333333 33444  589999999999999999999999875 8888888877655433    58999


Q ss_pred             EEEEcCC
Q 023411          198 FAFVDAE  204 (282)
Q Consensus       198 lV~id~~  204 (282)
                      +++.|++
T Consensus       224 vfiTDPp  230 (354)
T COG1568         224 VFITDPP  230 (354)
T ss_pred             eeecCch
Confidence            9998877

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.77  E-value=1.6  Score=40.38  Aligned_cols=96  Identities=13%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++.+|+=+|+| .|..+...+..+  +.+|+.+|.+++..+.+.+.+   +.  .+.....+. +.+...     -..+|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~-----l~~aD  232 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA-----VKRAD  232 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH-----HccCC
Confidence            45679999987 455566666665  368999999987655443332   11  122211222 223333     25789


Q ss_pred             EEEEcCCc--cccHH-HHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEK--RMYQE-YFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~--~~~~~-~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +||.....  ...+. .-+...+.   ++||++++-
T Consensus       233 vVI~a~~~~g~~~p~lit~~~l~~---mk~g~vIvD  265 (370)
T TIGR00518       233 LLIGAVLIPGAKAPKLVSNSLVAQ---MKPGAVIVD  265 (370)
T ss_pred             EEEEccccCCCCCCcCcCHHHHhc---CCCCCEEEE
Confidence            99976421  11111 12444455   788876554

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=90.65  E-value=7.1  Score=31.70  Aligned_cols=111  Identities=18%  Similarity=0.107  Sum_probs=62.4

Q ss_pred             ccCHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          102 QVSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      ..+.+....+...+..  .+..+|+=|||=+-+..+.-  ...++.+++..|++....        ..+  .. .|+.-|
T Consensus         6 wYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~--------~~~--~~-~F~fyD   72 (162)
T PF10237_consen    6 WYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFE--------QFG--GD-EFVFYD   72 (162)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHH--------hcC--Cc-ceEECC
Confidence            3445555555555443  35578999998665554433  122357899999997643        222  12 344444


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCcc--c-cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKR--M-YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~--~-~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..+. ..++..- .++||+|++|++--  . .......+.-+   +++++.+++
T Consensus        73 ~~~p-~~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L---~k~~~kii~  121 (162)
T PF10237_consen   73 YNEP-EELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLL---LKPGGKIIL  121 (162)
T ss_pred             CCCh-hhhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHH---hCccceEEE
Confidence            4321 1121111 58999999999842  2 22334555555   788777765

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.65  E-value=1.7  Score=39.51  Aligned_cols=95  Identities=11%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEec---CccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACER---DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~---s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .++.+||-+|+|. |..+..+++..  +.+|++++.   +++..+.++    ..|... +.....+..+    ..  . .
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~~-v~~~~~~~~~----~~--~-~  236 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGATY-VNSSKTPVAE----VK--L-V  236 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCEE-ecCCccchhh----hh--h-c
Confidence            4677999888763 55667777776  468999987   455554443    344321 2111111111    10  1 3


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +.+|+||-.....   ..+....++   |++||.+++=.
T Consensus       237 ~~~d~vid~~g~~---~~~~~~~~~---l~~~G~~v~~G  269 (355)
T cd08230         237 GEFDLIIEATGVP---PLAFEALPA---LAPNGVVILFG  269 (355)
T ss_pred             CCCCEEEECcCCH---HHHHHHHHH---ccCCcEEEEEe
Confidence            5789888655422   246677787   99999887643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=90.61  E-value=1.1  Score=42.36  Aligned_cols=96  Identities=7%  Similarity=0.041  Sum_probs=61.5

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      +++.+|||.--.+..+-...  --.++.+|+|+..++.......  --.....+...|.....-      ++++||+|+.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~f------edESFdiVId  120 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVF------EDESFDIVID  120 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccC------CCcceeEEEe
Confidence            89999999876666555432  2469999999988766655432  122346777777754321      1688998874


Q ss_pred             cCC-------------ccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          202 DAE-------------KRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       202 d~~-------------~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      -+.             ..+....+..+.++   +++||..+.
T Consensus       121 kGtlDal~~de~a~~~~~~v~~~~~eVsrv---l~~~gk~~s  159 (482)
T KOG2352|consen  121 KGTLDALFEDEDALLNTAHVSNMLDEVSRV---LAPGGKYIS  159 (482)
T ss_pred             cCccccccCCchhhhhhHHhhHHHhhHHHH---hccCCEEEE
Confidence            222             11233455666666   999997543

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=90.50  E-value=5  Score=37.39  Aligned_cols=127  Identities=17%  Similarity=0.212  Sum_probs=77.7

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec-CccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      .-+|....+-..++.+..+..++=..+|.+.++..+...+.++.+++..+. -.......++.+...|+.  ++++..+-
T Consensus        52 ~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--v~~~d~~d  129 (386)
T PF01053_consen   52 YGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--VTFVDPTD  129 (386)
T ss_dssp             TC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--EEEESTTS
T ss_pred             cccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--EEEeCchh
Confidence            346666777777777777888888999999887777777776778877763 334455566666666653  56665433


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCC--cEEEEeCCCCCC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVG--GIIVIDNVLWHG  237 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkpg--G~lv~dd~~~~g  237 (282)
                      .+.+....    ....++||+..+  +......++.+.++   .+..  -.+++||.+-..
T Consensus       130 ~~~l~~~l----~~~t~~v~~EspsNP~l~v~Dl~~i~~~---a~~~g~~~~vVDnT~atp  183 (386)
T PF01053_consen  130 LEALEAAL----RPNTKLVFLESPSNPTLEVPDLEAIAKL---AKEHGDILVVVDNTFATP  183 (386)
T ss_dssp             HHHHHHHH----CTTEEEEEEESSBTTTTB---HHHHHHH---HHHTTT-EEEEECTTTHT
T ss_pred             HHHHHhhc----cccceEEEEEcCCCcccccccHHHHHHH---HHHhCCceEEeeccccce
Confidence            34444333    468899999765  22233345555555   4444  477888886333

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=90.43  E-value=4  Score=36.76  Aligned_cols=94  Identities=17%  Similarity=0.167  Sum_probs=57.7

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....++.+||-.|+| .|..+..+++..  +.++++++.+++..+.+++    .|...-+.     ..+. .       .
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~vi~-----~~~~-~-------~  221 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAASAGG-----AYDT-P-------P  221 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCceecc-----cccc-C-------c
Confidence            345677899988864 344456667665  4689999999887665544    45432111     1110 0       2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +.+|+++......   ..+....+.   |++||.+++=..
T Consensus       222 ~~~d~~i~~~~~~---~~~~~~~~~---l~~~G~~v~~G~  255 (329)
T TIGR02822       222 EPLDAAILFAPAG---GLVPPALEA---LDRGGVLAVAGI  255 (329)
T ss_pred             ccceEEEECCCcH---HHHHHHHHh---hCCCcEEEEEec
Confidence            4678766433322   346677777   999999987443

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.31  E-value=4.2  Score=30.97  Aligned_cols=86  Identities=9%  Similarity=0.026  Sum_probs=53.8

Q ss_pred             HHHHhhcCCCEEEEEcccccHH-HHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          112 AMLVQILGAQRCIEVGVYTGYS-SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       112 ~~l~~~~~~~~VLEIG~G~G~~-t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      ..+++.....+|+|+|.|.=.- +..++++   +..++++|+++..          ++  .-++++..|..+---.+   
T Consensus         6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~----------a~--~g~~~v~DDitnP~~~i---   67 (129)
T COG1255           6 EYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT----------AP--EGLRFVVDDITNPNISI---   67 (129)
T ss_pred             HHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc----------Cc--ccceEEEccCCCccHHH---
Confidence            3455666777999999875332 3334442   4789999999861          11  23788888887632222   


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHH
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQ  217 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~  217 (282)
                        =...|+|+.--++.+...++-.+.+
T Consensus        68 --Y~~A~lIYSiRpppEl~~~ildva~   92 (129)
T COG1255          68 --YEGADLIYSIRPPPELQSAILDVAK   92 (129)
T ss_pred             --hhCccceeecCCCHHHHHHHHHHHH
Confidence              2567899987665555544444443

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.23  E-value=5.2  Score=37.06  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=81.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHH-------HHHhCC-CCcEEEEEcchhhH--HH
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY-------YERAGV-SHKVKIKHGLAADS--LK  185 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~-------~~~~g~-~~~v~~~~gd~~~~--l~  185 (282)
                      ...+.+...|+|+|.|......+.... ...=+|+|+.+...+.+..+       .+..|- .+.++.+++++.+.  ..
T Consensus       189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~  267 (419)
T KOG3924|consen  189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT  267 (419)
T ss_pred             ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence            345777899999999999888877654 34568888877665555333       333454 35688999988653  22


Q ss_pred             HHHhCCCCCceeEEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHH
Q 023411          186 ALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKN  258 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~  258 (282)
                      .+     ....++||++...-+  ..--.+.+..-   +++|..++-.+.+.+..    ......-..+.+|...
T Consensus       268 eI-----~~eatvi~vNN~~Fdp~L~lr~~eil~~---ck~gtrIiS~~~L~~r~----rs~es~~~~~~df~~i  330 (419)
T KOG3924|consen  268 EI-----QTEATVIFVNNVAFDPELKLRSKEILQK---CKDGTRIISSKPLVPRP----RSQESTSRRVSDFVAI  330 (419)
T ss_pred             HH-----hhcceEEEEecccCCHHHHHhhHHHHhh---CCCcceEeccccccccc----cchhHHHHHHHHHHhh
Confidence            33     356789998876322  22223355555   89999999888776631    1122233456666543

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=90.14  E-value=4.4  Score=36.61  Aligned_cols=105  Identities=22%  Similarity=0.296  Sum_probs=61.2

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....++++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....+..+....+.   ..
T Consensus       162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~  233 (351)
T cd08285         162 ANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT---GG  233 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh---CC
Confidence            345567888888765 3555666777664 2369999998877666553    3443212221122222222221   13


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+|+++-.....   ..+..+.++   |+++|.++.=++
T Consensus       234 ~~~d~vld~~g~~---~~~~~~~~~---l~~~G~~v~~g~  267 (351)
T cd08285         234 KGVDAVIIAGGGQ---DTFEQALKV---LKPGGTISNVNY  267 (351)
T ss_pred             CCCcEEEECCCCH---HHHHHHHHH---hhcCCEEEEecc
Confidence            4699888544322   346677787   999998886443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.06  E-value=5  Score=35.13  Aligned_cols=100  Identities=21%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .++++||-+|+| .|..+..+++..  +. +|+++|.+++..+.+++    .|...-+..  .+..+....+.   ....
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~---~~~g  187 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAA--GAARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ---NGRG  187 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh---CCCC
Confidence            467789988875 344556667665  34 48999998887766654    343211111  11111111111   1346


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|+||-....   ...++.+.++   ++++|.++.=...
T Consensus       188 ~d~vid~~G~---~~~~~~~~~~---l~~~G~iv~~G~~  220 (280)
T TIGR03366       188 VDVALEFSGA---TAAVRACLES---LDVGGTAVLAGSV  220 (280)
T ss_pred             CCEEEECCCC---hHHHHHHHHH---hcCCCEEEEeccC
Confidence            8998854332   2346667788   9999999875543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=89.80  E-value=5.2  Score=36.58  Aligned_cols=103  Identities=18%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHhC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILN  190 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~~  190 (282)
                      ....++++||-+|+| .|..+..+++..+  . +|+++|.+++..+.+++    .|...-+.....  +..+.+..+.  
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G--~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~--  253 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG--ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT--  253 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh--
Confidence            345678899988864 3445566677653  5 79999999987776643    344321211111  1222222221  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCC
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~  233 (282)
                        .+.+|+||-....   ...+....++   ++++ |.++.-..
T Consensus       254 --~~g~d~vid~~g~---~~~~~~a~~~---l~~~~G~~v~~g~  289 (368)
T cd08300         254 --DGGVDYTFECIGN---VKVMRAALEA---CHKGWGTSVIIGV  289 (368)
T ss_pred             --CCCCcEEEECCCC---hHHHHHHHHh---hccCCCeEEEEcc
Confidence              2479998854332   2345666777   8887 87776433

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=89.73  E-value=3.7  Score=37.35  Aligned_cols=110  Identities=24%  Similarity=0.302  Sum_probs=67.7

Q ss_pred             HHhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~  191 (282)
                      -++..++.+|.-+||| -|..++.-|.... ..++++||++++-+++|++.    |..+-++-... |..+.+..+.   
T Consensus       180 ta~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T---  251 (366)
T COG1062         180 TAKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT---  251 (366)
T ss_pred             cccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc---
Confidence            3455678899999998 4666666666554 57999999999998887763    33322222211 3444444442   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                       ++..|.+|--....   ..+++....   +.++|..++-.+--.|.
T Consensus       252 -~gG~d~~~e~~G~~---~~~~~al~~---~~~~G~~v~iGv~~~~~  291 (366)
T COG1062         252 -DGGADYAFECVGNV---EVMRQALEA---THRGGTSVIIGVAGAGQ  291 (366)
T ss_pred             -CCCCCEEEEccCCH---HHHHHHHHH---HhcCCeEEEEecCCCCc
Confidence             34778887543322   245556666   67788877755544443

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=89.61  E-value=0.28  Score=37.03  Aligned_cols=40  Identities=23%  Similarity=0.589  Sum_probs=27.5

Q ss_pred             ceeEEEEcCC---------ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          195 SYDFAFVDAE---------KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       195 ~fDlV~id~~---------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +||+|+|-..         .+....+|+.+..+   |+|||++|++-=-|..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~---L~pGG~lilEpQ~w~s   49 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSL---LRPGGILILEPQPWKS   49 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE---HHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHh---hCCCCEEEEeCCCcHH
Confidence            4899998654         23356688888888   9999999998655444

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=89.57  E-value=3.7  Score=36.83  Aligned_cols=103  Identities=22%  Similarity=0.315  Sum_probs=57.9

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .+..++.+||-.|+| .|..++.+++..+ ...+++++.+++..+.+++    .|...-+.....+..+.+...   ...
T Consensus       163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~---~~~  234 (347)
T cd05278         163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILEL---TGG  234 (347)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHH---cCC
Confidence            345567788887764 3666677777653 1478888887766555443    332211122222222222222   113


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +.+|++|-....   ...+....+.   |+++|.++.-
T Consensus       235 ~~~d~vld~~g~---~~~~~~~~~~---l~~~G~~v~~  266 (347)
T cd05278         235 RGVDCVIEAVGF---EETFEQAVKV---VRPGGTIANV  266 (347)
T ss_pred             CCCcEEEEccCC---HHHHHHHHHH---hhcCCEEEEE
Confidence            579988843222   1346666777   9999988753

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=89.30  E-value=0.97  Score=32.67  Aligned_cols=85  Identities=15%  Similarity=0.195  Sum_probs=50.4

Q ss_pred             EEEEcccccHHHHHHHHHCCC-C---CEEE-EEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          123 CIEVGVYTGYSSLAIALVLPE-S---GCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~~-~---~~v~-~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      |.=||+  |..+..+++.+-. +   .+++ ..+.+++..+...+.+   +    +.+...+..+..         +.-|
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~---------~~ad   63 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAA---------QEAD   63 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHH---------HHTS
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhh---------ccCC
Confidence            333555  5666666655421 2   5788 4499988765544433   2    344443444443         3569


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      +||+...+....+.++.+ ..   +.++.++|
T Consensus        64 vvilav~p~~~~~v~~~i-~~---~~~~~~vi   91 (96)
T PF03807_consen   64 VVILAVKPQQLPEVLSEI-PH---LLKGKLVI   91 (96)
T ss_dssp             EEEE-S-GGGHHHHHHHH-HH---HHTTSEEE
T ss_pred             EEEEEECHHHHHHHHHHH-hh---ccCCCEEE
Confidence            999999999999988888 44   45555443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=89.18  E-value=2.1  Score=39.79  Aligned_cols=83  Identities=19%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-C-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCce
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-E-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~f  196 (282)
                      ++||-||||  ..+...+..+. . ..+|+..|.+++..+.+.....     .+++..+-|+.+.  +..+.     ..+
T Consensus         2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li-----~~~   69 (389)
T COG1748           2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI-----KDF   69 (389)
T ss_pred             CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH-----hcC
Confidence            478999995  44444443321 1 2799999999887766655432     2688888887653  33443     455


Q ss_pred             eEEEEcCCccccHHHHHHH
Q 023411          197 DFAFVDAEKRMYQEYFELL  215 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~  215 (282)
                      |+|+.-.+.......++.|
T Consensus        70 d~VIn~~p~~~~~~i~ka~   88 (389)
T COG1748          70 DLVINAAPPFVDLTILKAC   88 (389)
T ss_pred             CEEEEeCCchhhHHHHHHH
Confidence            9998766544433333333

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.94  E-value=8.8  Score=35.69  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=54.9

Q ss_pred             EEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHH------------HHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~------------~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      +|--+|+|  |.++..+..+.. +-+|+++|++++-++..++            .++.+....|+++.. |..+   .. 
T Consensus         2 kI~viGtG--YVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~---a~-   74 (414)
T COG1004           2 KITVIGTG--YVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEE---AV-   74 (414)
T ss_pred             ceEEECCc--hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHH---HH-
Confidence            45556765  443332222211 3589999999987766543            233333333455432 2221   11 


Q ss_pred             hCCCCCceeEEEEcCC---c----cc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          189 LNGEASSYDFAFVDAE---K----RM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~---~----~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                           ...|++|+.-+   .    -+   .....+.+.+.   ++..-++|+......|+
T Consensus        75 -----~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~---~~~~~vvV~KSTVPvGt  126 (414)
T COG1004          75 -----KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEI---LDGKAVVVIKSTVPVGT  126 (414)
T ss_pred             -----hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhh---cCCCeEEEEcCCCCCCc
Confidence                 35588887533   1    11   22233444444   77778889888888886

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=88.89  E-value=4.2  Score=38.20  Aligned_cols=88  Identities=10%  Similarity=0.078  Sum_probs=55.7

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+++|+-+|+|. |......++..  +++|+.+|.++...+.|++    .|.    +.+  +..    ..     -...
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~----e~-----v~~a  258 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TME----EA-----VKEG  258 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHH----HH-----HcCC
Confidence            3688999999985 55555566655  4799999999987766654    243    211  111    12     1457


Q ss_pred             eEEEEcCCccccHHHHHH-HHHhhcCCCCCcEEEEeC
Q 023411          197 DFAFVDAEKRMYQEYFEL-LLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~-~~~~~~~LkpgG~lv~dd  232 (282)
                      |+||......   ..+.. ..+.   +|+||+++.-.
T Consensus       259 DVVI~atG~~---~~i~~~~l~~---mk~GgilvnvG  289 (413)
T cd00401         259 DIFVTTTGNK---DIITGEHFEQ---MKDGAIVCNIG  289 (413)
T ss_pred             CEEEECCCCH---HHHHHHHHhc---CCCCcEEEEeC
Confidence            9998654422   23433 3566   99999987644

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=88.87  E-value=2  Score=38.40  Aligned_cols=87  Identities=15%  Similarity=0.136  Sum_probs=52.8

Q ss_pred             CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++++||=+|+| .|..+..+++..+ ...++++|.+++.++.+.+.    .      ++  |..+.   .     ...+|
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~-----~~g~D  202 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P-----RRDYR  202 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c-----CCCCC
Confidence            46688888876 4666677777664 22477788887766554431    1      11  11110   1     35789


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +||-.....   ..++.+.++   |+++|.+++=.
T Consensus       203 vvid~~G~~---~~~~~~~~~---l~~~G~iv~~G  231 (308)
T TIGR01202       203 AIYDASGDP---SLIDTLVRR---LAKGGEIVLAG  231 (308)
T ss_pred             EEEECCCCH---HHHHHHHHh---hhcCcEEEEEe
Confidence            888544322   345677788   99999998643

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=88.84  E-value=4.8  Score=37.55  Aligned_cols=104  Identities=18%  Similarity=0.201  Sum_probs=60.0

Q ss_pred             hhcCCCEEEEEc-cc-ccHHHHHHHHHCCCC-CEEEEEecCccHHHHHHHHHHHh----CCCCcEEEEE----cchhhHH
Q 023411          116 QILGAQRCIEVG-VY-TGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA----GVSHKVKIKH----GLAADSL  184 (282)
Q Consensus       116 ~~~~~~~VLEIG-~G-~G~~t~~la~~~~~~-~~v~~iD~s~~~~~~a~~~~~~~----g~~~~v~~~~----gd~~~~l  184 (282)
                      ...++.+|+=+| +| .|..+..+++...-+ .+|+++|.+++.++.+++.+...    |..  ..++.    .+..+.+
T Consensus       172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v  249 (410)
T cd08238         172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATL  249 (410)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHH
Confidence            345667888887 33 566777777765312 37999999999988887753211    211  12221    1222222


Q ss_pred             HHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..+.   ....+|+||.....   ...+....++   ++++|.+++
T Consensus       250 ~~~t---~g~g~D~vid~~g~---~~~~~~a~~~---l~~~G~~v~  286 (410)
T cd08238         250 MELT---GGQGFDDVFVFVPV---PELVEEADTL---LAPDGCLNF  286 (410)
T ss_pred             HHHh---CCCCCCEEEEcCCC---HHHHHHHHHH---hccCCeEEE
Confidence            2221   13469998875432   2346667777   898775443

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.80  E-value=7.1  Score=35.61  Aligned_cols=104  Identities=16%  Similarity=0.231  Sum_probs=58.0

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHhCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG  191 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~~~  191 (282)
                      ....++++||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  254 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---  254 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence            445678899988864 2444555666653 2379999999887776643    344321211110  1112222221   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCC
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNV  233 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~  233 (282)
                       .+.+|++|-....   ...+....+.   +++| |.++.-..
T Consensus       255 -~~~~d~vid~~G~---~~~~~~~~~~---~~~~~g~~v~~g~  290 (369)
T cd08301         255 -GGGVDYSFECTGN---IDAMISAFEC---VHDGWGVTVLLGV  290 (369)
T ss_pred             -CCCCCEEEECCCC---hHHHHHHHHH---hhcCCCEEEEECc
Confidence             2468977743322   2345556677   8996 88876443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=88.42  E-value=7.9  Score=34.65  Aligned_cols=102  Identities=18%  Similarity=0.303  Sum_probs=61.1

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .....++.+||-.|+|. |..++.+++..  +.+++++..+++..+.+++    .+...-+.....+..+.+....   .
T Consensus       154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~  224 (337)
T cd08261         154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---D  224 (337)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh---C
Confidence            34456778999888763 66777788876  4789999888776665533    3332212222222222222221   1


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ...+|++|-....   ...+..+.+.   |+++|.++.
T Consensus       225 ~~~vd~vld~~g~---~~~~~~~~~~---l~~~G~~i~  256 (337)
T cd08261         225 GEGADVVIDATGN---PASMEEAVEL---VAHGGRVVL  256 (337)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHH---HhcCCEEEE
Confidence            3468999865432   2335666777   899998775

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=88.26  E-value=7  Score=35.46  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=55.0

Q ss_pred             CCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ++.+||=.|+| .|..+..+++..+  . ++++++.+++..+.++    ..|...-+.....+..+....+........+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~  250 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAG--ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA  250 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence            66788877754 3444556666653  5 8999998877665543    3454321111111111111111111113579


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+||-....   ...+....+.   |+++|.++.=
T Consensus       251 d~vid~~g~---~~~~~~~~~~---l~~~G~~v~~  279 (361)
T cd08231         251 DVVIEASGH---PAAVPEGLEL---LRRGGTYVLV  279 (361)
T ss_pred             cEEEECCCC---hHHHHHHHHH---hccCCEEEEE
Confidence            998854332   2345566677   9999988753

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.97  E-value=2.3  Score=37.34  Aligned_cols=64  Identities=19%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCC----CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPE----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      .+...++|+|||.|..+.+++..++.    ...++.||...... .+-..+........++=+..|+.+
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d   84 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD   84 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec
Confidence            35568999999999999999998842    46899999865433 223333332211235555556555

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=87.93  E-value=6.3  Score=35.48  Aligned_cols=102  Identities=20%  Similarity=0.300  Sum_probs=58.5

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch---hhHHHHHH
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA---ADSLKALI  188 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~---~~~l~~l~  188 (282)
                      .....++.+||-.|+|. |..+..+++..+  .+ +++++.+++..+.+++    .|...-+.....+.   .+.+....
T Consensus       157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL  230 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence            34456778888777654 666777787754  55 8888888776665544    23322111111121   11112221


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                         ....+|+||-.....   ..+....+.   |+++|.++.
T Consensus       231 ---~~~~~d~vld~~g~~---~~~~~~~~~---l~~~G~~v~  263 (343)
T cd05285         231 ---GGKGPDVVIECTGAE---SCIQTAIYA---TRPGGTVVL  263 (343)
T ss_pred             ---CCCCCCEEEECCCCH---HHHHHHHHH---hhcCCEEEE
Confidence               135699988644322   245666777   999998875

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=87.67  E-value=2.8  Score=37.66  Aligned_cols=135  Identities=13%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             CCEEEEEcccccHHHHHHHHHC-------------------CCCCEEEEEecCcc--HHHHHHHHHHHh-----------
Q 023411          120 AQRCIEVGVYTGYSSLAIALVL-------------------PESGCLVACERDAR--SLEVAKKYYERA-----------  167 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~-------------------~~~~~v~~iD~s~~--~~~~a~~~~~~~-----------  167 (282)
                      ..+||-||-|.|.-.+.++..+                   ++...++.||+-+=  .+......+...           
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            4699999999998877777766                   01148999998642  222222222222           


Q ss_pred             --CC-C--CcEEEEEcchhhHHH-HHHhCCCCCceeEEEE--------cCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          168 --GV-S--HKVKIKHGLAADSLK-ALILNGEASSYDFAFV--------DAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       168 --g~-~--~~v~~~~gd~~~~l~-~l~~~~~~~~fDlV~i--------d~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                        .. .  =+++|.+.|+..... ++...-.....|+|-+        .........++..+-..   ++||.+|+|  +
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~---~~~GslLLV--v  241 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDI---CPPGSLLLV--V  241 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhh---cCCCcEEEE--E
Confidence              00 1  147888888876432 2111000124565521        11245566677888777   999998877  3


Q ss_pred             CCCCcccCCcCC-ChhhHHHHHHHHHh
Q 023411          234 LWHGKVADQMVN-DAKTISIRNFNKNL  259 (282)
Q Consensus       234 ~~~g~~~~~~~~-~~~~~~~~~~~~~~  259 (282)
                      --+|...+-..+ ..++.-|+.+++++
T Consensus       242 DSpGSYS~~tvg~~~kkyPmqfLlD~~  268 (315)
T PF11312_consen  242 DSPGSYSEITVGKEEKKYPMQFLLDHT  268 (315)
T ss_pred             cCCCCchheeeccccCcCcHHHHHHHH
Confidence            345554433332 34455677777774

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=87.54  E-value=8.7  Score=35.06  Aligned_cols=102  Identities=15%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHhC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILN  190 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~~  190 (282)
                      ....++.+||-+|+| .|..+..+++..+  . +|++++.+++..+.+++    .|...-+.....  +..+.+..+.  
T Consensus       180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G--~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~--  251 (365)
T cd08277         180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAG--ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT--  251 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh--
Confidence            345677899888874 3445556677653  5 79999998887766643    344321221111  1122222221  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeC
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDN  232 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd  232 (282)
                        ...+|+||-....   ...+....+.   ++++ |.++.=.
T Consensus       252 --~~g~d~vid~~g~---~~~~~~~~~~---l~~~~G~~v~~g  286 (365)
T cd08277         252 --GGGVDYSFECTGN---ADLMNEALES---TKLGWGVSVVVG  286 (365)
T ss_pred             --CCCCCEEEECCCC---hHHHHHHHHh---cccCCCEEEEEc
Confidence              2468988854332   2345666677   8875 8877643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=87.46  E-value=18  Score=33.89  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEe-cCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD-~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +|....+-..+.....+..++-.-+|...++..+...+|.+.++++.+ .--.-....++.....|..  .+++..+-.+
T Consensus        76 nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~  153 (409)
T KOG0053|consen   76 NPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLK  153 (409)
T ss_pred             CCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHH
Confidence            334444455566666777788889988888888887778777877775 3445566677777766654  5666554444


Q ss_pred             HHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      .+....    .+..++||+..+  +-.....++.+.+++.  ++|-.+|+||.+-+.
T Consensus       154 ~~~~~i----~~~t~~V~~ESPsNPll~v~DI~~l~~la~--~~g~~vvVDnTf~~p  204 (409)
T KOG0053|consen  154 KILKAI----KENTKAVFLESPSNPLLKVPDIEKLARLAH--KYGFLVVVDNTFGSP  204 (409)
T ss_pred             HHHHhh----ccCceEEEEECCCCCccccccHHHHHHHHh--hCCCEEEEeCCcCcc
Confidence            333332    346899999765  2222334666666622  456677888887555

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=87.45  E-value=13  Score=34.48  Aligned_cols=107  Identities=17%  Similarity=0.232  Sum_probs=59.6

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~  192 (282)
                      ....++++||-.|+| .|..+..+++... ...++++|.+++.++.+++    .|.. .+.... .+..+.+..+.   .
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~---~  251 (393)
T TIGR02819       181 AGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL---G  251 (393)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc---C
Confidence            344567788777765 3445556676653 2346677888777776665    3432 111111 12222222221   1


Q ss_pred             CCceeEEEEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          193 ASSYDFAFVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       193 ~~~fDlV~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...+|++|--.....           ....++...++   +++||.+++=.+
T Consensus       252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~G~i~~~G~  300 (393)
T TIGR02819       252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEV---TRVGGAIGIPGL  300 (393)
T ss_pred             CCCCcEEEECCCCccccccccccccchHHHHHHHHHH---hhCCCEEEEeee
Confidence            246898885443221           12357777788   999999988544

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=87.12  E-value=18  Score=33.50  Aligned_cols=127  Identities=15%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +|....+-..++.......++=..+|++.....+...+.++.+|+..+..-. ....+....+..|..  ++++..+..+
T Consensus        49 nPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~--v~~~d~~~~e  126 (377)
T TIGR01324        49 TLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVD--ITYYDPLIGE  126 (377)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcE--EEEECCCCHH
Confidence            3444444555555555567776777777666655555665678877664322 222233334444442  4443221112


Q ss_pred             HHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCCcc
Q 023411          183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHGKV  239 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g~~  239 (282)
                      .+....    ..+..+|++..+  .......++.+.++   .+. |-.+++|++...|..
T Consensus       127 ~l~~~i----~~~tklV~lesp~Np~g~~~dl~~I~~l---a~~~g~~livD~t~a~g~~  179 (377)
T TIGR01324       127 DIATLI----QPNTKVLFLEAPSSITFEIQDIPAIAKA---ARNPGIVIMIDNTWAAGLL  179 (377)
T ss_pred             HHHHhc----CCCceEEEEECCCCCCCcHHHHHHHHHH---HHHcCCEEEEECCCccccc
Confidence            333322    345678887654  22344456667666   554 557788888766554

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=86.92  E-value=4.3  Score=36.28  Aligned_cols=87  Identities=15%  Similarity=0.198  Sum_probs=48.9

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCC---CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+|.=||+|.  .+..++..+...   .+|+++|.+++..+.+++    .|...  . ...+.    ...     ....|
T Consensus         7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~----~~~-----~~~aD   68 (307)
T PRK07502          7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSA----AEA-----VKGAD   68 (307)
T ss_pred             cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCH----HHH-----hcCCC
Confidence            4688888764  333333333212   379999999876655432    33221  1 11111    111     24578


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEE
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGII  228 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~l  228 (282)
                      +|++..+.......++.+.+.   +++|+++
T Consensus        69 vViiavp~~~~~~v~~~l~~~---l~~~~iv   96 (307)
T PRK07502         69 LVILCVPVGASGAVAAEIAPH---LKPGAIV   96 (307)
T ss_pred             EEEECCCHHHHHHHHHHHHhh---CCCCCEE
Confidence            888877765555666666666   7777644

>PRK09028 cystathionine beta-lyase; Provisional

Probab=86.70  E-value=17  Score=33.86  Aligned_cols=121  Identities=13%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc-cHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      .+-..++....+..++=..+|+..+...+...+.++.+|+..+..- .....+...+...|..  +.++..+..+.+...
T Consensus        65 ~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~--v~~v~~~~~e~l~~~  142 (394)
T PRK09028         65 AFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIE--TTYYDPMIGEGIREL  142 (394)
T ss_pred             HHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceE--EEEECCCCHHHHHHh
Confidence            3334444444445677677777666555544466577888877542 3333344444444542  444432222333333


Q ss_pred             HhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCCc
Q 023411          188 ILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHGK  238 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g~  238 (282)
                      .    ..+-.+|++..+  +......++.+.++   .+. |-.+++|++...+.
T Consensus       143 l----~~~TklV~lespsNPtg~v~dl~~I~~l---a~~~g~~lvvD~t~a~p~  189 (394)
T PRK09028        143 I----RPNTKVLFLESPGSITMEVQDVPTLSRI---AHEHDIVVMLDNTWASPI  189 (394)
T ss_pred             c----CcCceEEEEECCCCCCCcHHHHHHHHHH---HHHcCCEEEEECCccccc
Confidence            2    244578888755  22334456666666   554 55777888875554

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=86.62  E-value=9.6  Score=34.81  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++++||-.|+| .|..++.+++..  +.++++++.+++....+   .+..|..   .++.....+.+...     .+.+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~-----~~~~  248 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA-----IGTM  248 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh-----cCCC
Confidence            467788888875 355566677765  46888888876543222   2234432   12211111122222     2358


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+||-...   ....++...++   |++||.++.=
T Consensus       249 D~vid~~g---~~~~~~~~~~~---l~~~G~iv~v  277 (360)
T PLN02586        249 DYIIDTVS---AVHALGPLLGL---LKVNGKLITL  277 (360)
T ss_pred             CEEEECCC---CHHHHHHHHHH---hcCCcEEEEe
Confidence            98884332   12346667788   9999988753

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.55  E-value=7.4  Score=35.16  Aligned_cols=110  Identities=14%  Similarity=0.127  Sum_probs=64.0

Q ss_pred             HHHhhcCCCEEEEEcccccHHH-HHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE--EcchhhHHHHHHh
Q 023411          113 MLVQILGAQRCIEVGVYTGYSS-LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALIL  189 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t-~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~gd~~~~l~~l~~  189 (282)
                      ..+...++.+|.-+|+|.=.++ ..-++..+ .+++++||++++-.+.|++.    |..+-++-.  +..+.+.+.++- 
T Consensus       186 ~~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~EmT-  259 (375)
T KOG0022|consen  186 NTAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEMT-  259 (375)
T ss_pred             hhcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHHh-
Confidence            4456678889999999753333 33444433 57999999999988877763    333222211  113444444443 


Q ss_pred             CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCCCCCC
Q 023411          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNVLWHG  237 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~~~~g  237 (282)
                         ++.+|.-|-.....   +.+.++...   .++| |.-|+=.+.-.|
T Consensus       260 ---dgGvDysfEc~G~~---~~m~~al~s---~h~GwG~sv~iGv~~~~  299 (375)
T KOG0022|consen  260 ---DGGVDYSFECIGNV---STMRAALES---CHKGWGKSVVIGVAAAG  299 (375)
T ss_pred             ---cCCceEEEEecCCH---HHHHHHHHH---hhcCCCeEEEEEecCCC
Confidence               58899988443322   234444444   5666 666654444333

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=86.45  E-value=20  Score=33.61  Aligned_cols=105  Identities=10%  Similarity=0.185  Sum_probs=56.5

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC------CC
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------EA  193 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~------~~  193 (282)
                      .+|.=||.|.  .+..+|..+. .+.+|+++|++++.++..+.     |.   +.+...+..+.+......+      ..
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            4677788764  3334443332 24689999999987664221     11   2222222222221111100      01


Q ss_pred             CceeEEEEcCCc----------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          194 SSYDFAFVDAEK----------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       194 ~~fDlV~id~~~----------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ...|+||+.-+.          .......+.+.+.   +++|.++|......+|.
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~---l~~g~iVI~~STv~pgt  125 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPV---LKKGDLVILESTSPVGA  125 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHh---CCCCCEEEEeCCCCCCH
Confidence            356898876443          2233345556666   89998888887777776

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=86.41  E-value=1.9  Score=37.12  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=41.0

Q ss_pred             cccHHH--HHHHHHC-CCCCEEEEEecCccH--HHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcC
Q 023411          129 YTGYSS--LAIALVL-PESGCLVACERDARS--LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  203 (282)
Q Consensus       129 G~G~~t--~~la~~~-~~~~~v~~iD~s~~~--~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~  203 (282)
                      |.|-.|  ..++..+ ..+.+|.-||-+|..  .++.+...+...+++++.+...+-...+......-+...||+||+|-
T Consensus        12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl   91 (231)
T PF07015_consen   12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL   91 (231)
T ss_pred             CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence            444444  3344444 246799999988864  34433222222345567776655444444433221234699999984

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=86.40  E-value=10  Score=34.17  Aligned_cols=102  Identities=14%  Similarity=0.138  Sum_probs=58.8

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ....++.+||=.|+| .|..+..+++..  +. +|++++.+++..+.+++    .|.+.-+.....+..+.+....   .
T Consensus       168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---~  238 (351)
T cd08233         168 SGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---G  238 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh---C
Confidence            344567788888754 344455566665  35 79999988887766643    2443212222223322222221   1


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ...+|+|+-....   ...++.+.+.   |+++|.++.=
T Consensus       239 ~~~~d~vid~~g~---~~~~~~~~~~---l~~~G~~v~~  271 (351)
T cd08233         239 GGGVDVSFDCAGV---QATLDTAIDA---LRPRGTAVNV  271 (351)
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHh---ccCCCEEEEE
Confidence            2459999864432   2245667777   9999988763

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=86.36  E-value=8.8  Score=35.01  Aligned_cols=101  Identities=15%  Similarity=0.224  Sum_probs=58.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....++++||-.|+|. |..+..+++..+ -.++++++.+++..+.+++    .|...-+.....+..+.+....    .
T Consensus       182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~  252 (365)
T cd08278         182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT----G  252 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----C
Confidence            3445678888887653 556666777764 2369999998877665543    3432111111112222222221    3


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..+|+|+-.....   ..+....+.   ++++|.++.
T Consensus       253 ~~~d~vld~~g~~---~~~~~~~~~---l~~~G~~v~  283 (365)
T cd08278         253 GGVDYALDTTGVP---AVIEQAVDA---LAPRGTLAL  283 (365)
T ss_pred             CCCcEEEECCCCc---HHHHHHHHH---hccCCEEEE
Confidence            5689888544322   235667777   899998876

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=86.32  E-value=2.6  Score=36.01  Aligned_cols=60  Identities=23%  Similarity=0.208  Sum_probs=45.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ...-|+|||.|.|+++..+..+-  -.++..+|+++.++.-.+-..+.+  ..+..++++|+..
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR  109 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR  109 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence            45579999999999999998763  368899999998877665544433  2368888888764

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.87  E-value=18  Score=30.40  Aligned_cols=82  Identities=16%  Similarity=0.145  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .+++||-.|++ |..+..+++.+. .+.+|++++.+++..+...+.....   .++.++.+|..+.  ...+.+..  ..
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35688888874 666666666552 3579999999887665554444332   2478888887642  11111110  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +.+|.++....
T Consensus        80 ~~id~ii~~ag   90 (238)
T PRK05786         80 NAIDGLVVTVG   90 (238)
T ss_pred             CCCCEEEEcCC
Confidence            46788887654

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=85.42  E-value=6.2  Score=35.33  Aligned_cols=94  Identities=21%  Similarity=0.273  Sum_probs=55.7

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ++.+||-.|+|. |..+..+++..+  . ++++++.+++..+.+++    .+..   .++..+... +.....  ..+.+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G--~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~--~~~~v  232 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAG--AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA--DKGDF  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc--cCCCc
Confidence            677888888764 556677777663  4 78999988876665443    2332   222211111 111111  12469


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |+++-....   ...++...+.   |+++|.++.
T Consensus       233 d~vld~~g~---~~~~~~~~~~---L~~~G~~v~  260 (339)
T cd08232         233 DVVFEASGA---PAALASALRV---VRPGGTVVQ  260 (339)
T ss_pred             cEEEECCCC---HHHHHHHHHH---HhcCCEEEE
Confidence            999864432   2345667777   999998875

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.37  E-value=11  Score=34.96  Aligned_cols=112  Identities=18%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             EEEEe-cCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc--ccHHHHHHHHHhhcCCC
Q 023411          147 LVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLLLQIR  223 (282)
Q Consensus       147 v~~iD-~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~--~~~~~l~~~~~~~~~Lk  223 (282)
                      +++-| .-+.+.+..+++..+.+++--..+...|...+...-.+..-.+.||+|++|-.-.  .....|+++..+.+.++
T Consensus       134 LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~  213 (483)
T KOG0780|consen  134 LVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK  213 (483)
T ss_pred             EEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC
Confidence            45555 4566778888888776654222222333322221111111258999999997733  34557888888888899


Q ss_pred             CCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEee
Q 023411          224 VGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP  271 (282)
Q Consensus       224 pgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  271 (282)
                      |+-+|++=|.-.         +.....-.+.|.+.+    ++..+++.
T Consensus       214 Pd~vi~VmDasi---------GQaae~Qa~aFk~~v----dvg~vIlT  248 (483)
T KOG0780|consen  214 PDEIIFVMDASI---------GQAAEAQARAFKETV----DVGAVILT  248 (483)
T ss_pred             CCeEEEEEeccc---------cHhHHHHHHHHHHhh----ccceEEEE
Confidence            998776644421         112223456677655    45555544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=85.31  E-value=7  Score=36.29  Aligned_cols=92  Identities=13%  Similarity=0.121  Sum_probs=59.5

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc-EEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +|+-++=..|..+++++..-+     +.+-=|--...-.++|++.+|+... +++.  +..+.+        .+.+|+|+
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~--------~~~~d~vl  111 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFL--DSTADY--------PQQPGVVL  111 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceee--cccccc--------cCCCCEEE
Confidence            789999999999999995432     2221111223445788888887643 5554  222222        36799999


Q ss_pred             EcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          201 VDAEKR--MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       201 id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +--++.  .....+..+...   |.||+.+++-
T Consensus       112 ~~~PK~~~~l~~~l~~l~~~---l~~~~~ii~g  141 (378)
T PRK15001        112 IKVPKTLALLEQQLRALRKV---VTSDTRIIAG  141 (378)
T ss_pred             EEeCCCHHHHHHHHHHHHhh---CCCCCEEEEE
Confidence            876643  344456666667   9999998764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=85.27  E-value=3.3  Score=33.17  Aligned_cols=94  Identities=17%  Similarity=0.192  Sum_probs=53.4

Q ss_pred             EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC------CCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g------~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      |.-||+|.+..++...-... +.+|+-...+++.++..++.-....      +..++.+ ..|..+.   +      ...
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a---~------~~a   70 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEA---L------EDA   70 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHH---H------TT-
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHH---h------Ccc
Confidence            55677776655444222221 3489999998877665554322111      1123433 2333222   2      456


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |+|++--+.....++++.+.+.   ++++-.++.
T Consensus        71 d~IiiavPs~~~~~~~~~l~~~---l~~~~~ii~  101 (157)
T PF01210_consen   71 DIIIIAVPSQAHREVLEQLAPY---LKKGQIIIS  101 (157)
T ss_dssp             SEEEE-S-GGGHHHHHHHHTTT---SHTT-EEEE
T ss_pred             cEEEecccHHHHHHHHHHHhhc---cCCCCEEEE
Confidence            9999988877788899999988   877766655

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=85.12  E-value=5.7  Score=35.44  Aligned_cols=79  Identities=18%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCce
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~f  196 (282)
                      +++||-.| |+|.++..+++.+- .+.+|+++..++.............+...+++++.+|..+.  +....     ..+
T Consensus         5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-----~~~   78 (325)
T PLN02989          5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI-----DGC   78 (325)
T ss_pred             CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH-----cCC
Confidence            46788777 57888888887663 35688887777654433322222223334688999998763  23332     457


Q ss_pred             eEEEEcCC
Q 023411          197 DFAFVDAE  204 (282)
Q Consensus       197 DlV~id~~  204 (282)
                      |.||..+.
T Consensus        79 d~vih~A~   86 (325)
T PLN02989         79 ETVFHTAS   86 (325)
T ss_pred             CEEEEeCC
Confidence            98887654

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=84.97  E-value=18  Score=32.43  Aligned_cols=97  Identities=14%  Similarity=0.123  Sum_probs=53.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC--CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .++.+|+-||+  |..+..++..+.  ...+|+.++.+++..+...+   ..|.    ..+.  ..+. ...     -..
T Consensus       176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~---~~g~----~~~~--~~~~-~~~-----l~~  238 (311)
T cd05213         176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAK---ELGG----NAVP--LDEL-LEL-----LNE  238 (311)
T ss_pred             ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH---HcCC----eEEe--HHHH-HHH-----Hhc
Confidence            36789999998  455555444432  12579999998765433222   2232    2221  2222 222     245


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .|+||.-.....+........+.   .+.++.+++|-..
T Consensus       239 aDvVi~at~~~~~~~~~~~~~~~---~~~~~~~viDlav  274 (311)
T cd05213         239 ADVVISATGAPHYAKIVERAMKK---RSGKPRLIVDLAV  274 (311)
T ss_pred             CCEEEECCCCCchHHHHHHHHhh---CCCCCeEEEEeCC
Confidence            79999876655543333433332   3336788887554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.82  E-value=14  Score=33.53  Aligned_cols=98  Identities=17%  Similarity=0.166  Sum_probs=57.8

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .+++.|--+|.| -|..+..+|++++  .+|++||-++.--   ++.++..|-+.-+.+. . -.+....+     .+..
T Consensus       180 ~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kk---eea~~~LGAd~fv~~~-~-d~d~~~~~-----~~~~  247 (360)
T KOG0023|consen  180 GPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKK---EEAIKSLGADVFVDST-E-DPDIMKAI-----MKTT  247 (360)
T ss_pred             CCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhH---HHHHHhcCcceeEEec-C-CHHHHHHH-----HHhh
Confidence            366677666654 7899999999994  8999999987433   3445555654322222 1 22344444     2344


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |.++.... .-....++.+..+   ||++|.+|+=
T Consensus       248 dg~~~~v~-~~a~~~~~~~~~~---lk~~Gt~V~v  278 (360)
T KOG0023|consen  248 DGGIDTVS-NLAEHALEPLLGL---LKVNGTLVLV  278 (360)
T ss_pred             cCcceeee-eccccchHHHHHH---hhcCCEEEEE
Confidence            44432211 0011225667777   9999998883

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=84.69  E-value=0.78  Score=34.50  Aligned_cols=33  Identities=9%  Similarity=-0.035  Sum_probs=24.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA  154 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~  154 (282)
                      +....+|||||+|....-+.+.   +..-.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            4457999999999987766653   45668888754

; GO: 0008168 methyltransferase activity

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.68  E-value=8.1  Score=32.34  Aligned_cols=91  Identities=13%  Similarity=0.141  Sum_probs=54.2

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ....+++||-+|+. +|..+..++   .+..+|+.+|++|.+-..         +.+.|+|..+     +..+     .+
T Consensus        41 ~~~E~~~vli~G~YltG~~~a~~L---s~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~-----~~~~-----~G   98 (254)
T COG4017          41 EGEEFKEVLIFGVYLTGNYTAQML---SKADKVTVVDIHPFMRGF---------LPNNVKFRNL-----LKFI-----RG   98 (254)
T ss_pred             cccCcceEEEEEeeehhHHHHHHh---cccceEEEecCCHHHHhc---------CCCCccHhhh-----cCCC-----CC
Confidence            34467899999987 555554444   346899999999865322         3445665533     2222     58


Q ss_pred             ceeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          195 SYDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       195 ~fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      .+|+|+---.... .+.   .+.+    +.| +++++.|..-+
T Consensus        99 ~~DlivDlTGlGG~~Pe---~L~~----fnp-~vfiVEdP~gn  133 (254)
T COG4017          99 EVDLIVDLTGLGGIEPE---FLAK----FNP-KVFIVEDPKGN  133 (254)
T ss_pred             ceeEEEeccccCCCCHH---HHhc----cCC-ceEEEECCCCC
Confidence            8999984333222 222   2333    455 47888877533

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=84.55  E-value=3.1  Score=37.28  Aligned_cols=100  Identities=13%  Similarity=0.063  Sum_probs=54.2

Q ss_pred             EEEEEcccc--cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCCCCceeE
Q 023411          122 RCIEVGVYT--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       122 ~VLEIG~G~--G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +|+=+|+|.  |+++.+|++.   +..|+.++.+++.++..++   ..|+    .+.. +...............+.||+
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D~   73 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETADAAEPIHR   73 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcccccccCE
Confidence            688889873  4445555543   3579999987655443332   1222    1110 100000000000001368999


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEE-EEeCCC
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGII-VIDNVL  234 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~l-v~dd~~  234 (282)
                      ||+..-..+..+.++.+.++   +.+++.+ .+.|-+
T Consensus        74 viv~vK~~~~~~al~~l~~~---l~~~t~vv~lQNGv  107 (305)
T PRK05708         74 LLLACKAYDAEPAVASLAHR---LAPGAELLLLQNGL  107 (305)
T ss_pred             EEEECCHHhHHHHHHHHHhh---CCCCCEEEEEeCCC
Confidence            99876655566778888888   8888755 455544

>PRK07582 cystathionine gamma-lyase; Validated

Probab=84.32  E-value=18  Score=33.29  Aligned_cols=117  Identities=16%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc-cHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      |....+-..++... +..++-+++|+..+...+...+.++.+|+..+..- .....++..+...|.  ++.++  +..+.
T Consensus        51 p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v--~~~~~  125 (366)
T PRK07582         51 PTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREA--PTAGM  125 (366)
T ss_pred             ccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEE--CCCCh
Confidence            33444444444444 34566678888766655555555566787776544 223334444444443  24444  33222


Q ss_pred             HHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCC-CCcEEEEeCCC
Q 023411          184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIR-VGGIIVIDNVL  234 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lk-pgG~lv~dd~~  234 (282)
                      ....     ....++|++..+.  ......++.+.++   .+ .|..+++|+..
T Consensus       126 ~~~~-----~~~t~lV~le~p~NPtg~v~di~~I~~~---a~~~g~~lvVD~t~  171 (366)
T PRK07582        126 AEAA-----LAGADLVLAETPSNPGLDVCDLAALAAA---AHAAGALLVVDNTT  171 (366)
T ss_pred             HHHh-----ccCceEEEEECCCCCCCCccCHHHHHHH---HHHcCCEEEEECCC
Confidence            1111     2456788876442  1122335666665   44 46678888875

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=84.31  E-value=11  Score=32.64  Aligned_cols=94  Identities=21%  Similarity=0.255  Sum_probs=56.4

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ....++.+||-.|+|. |..+..+++..+  .+ +++++.+++..+.+++.    |..+.+.....   ..   .    .
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~---~----~  156 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPADPVAADTA---DE---I----G  156 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCCccccccch---hh---h----c
Confidence            4455778888888764 666677777764  55 99999888877655542    31111111100   00   1    1


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ...+|+||......   .......+.   |+++|.++.
T Consensus       157 ~~~~d~vl~~~~~~---~~~~~~~~~---l~~~g~~~~  188 (277)
T cd08255         157 GRGADVVIEASGSP---SALETALRL---LRDRGRVVL  188 (277)
T ss_pred             CCCCCEEEEccCCh---HHHHHHHHH---hcCCcEEEE
Confidence            35789888543322   245666777   899998864

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=84.31  E-value=6.2  Score=36.77  Aligned_cols=105  Identities=15%  Similarity=0.205  Sum_probs=53.9

Q ss_pred             EEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH---hCC-----CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV-----SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~-----~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      |--||+  |+.++.++..+..+.+|+++|++++.++..++....   .++     ....++....  +. ...     ..
T Consensus         3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~--~~-~~~-----~~   72 (388)
T PRK15057          3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATL--DK-NEA-----YR   72 (388)
T ss_pred             EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEec--ch-hhh-----hc
Confidence            444555  555555554443346799999999988776652110   000     0112221110  00 111     14


Q ss_pred             ceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          195 SYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       195 ~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ..|+||+.-+..        +.......+..+.. +++|.++|......+|+
T Consensus        73 ~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         73 DADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF  123 (388)
T ss_pred             CCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence            568888754411        11222233333333 68888888888888876

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=84.27  E-value=16  Score=32.69  Aligned_cols=101  Identities=26%  Similarity=0.349  Sum_probs=55.3

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++.+||=.|+| .|..+..+++..+ ..++++++.+++....+++    .|.+.-+.....+..+.+..+.   ...
T Consensus       163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~  234 (345)
T cd08286         163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT---DGR  234 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh---CCC
Confidence            34566777766653 2334455666553 2578889888776555543    3443223332223222222221   135


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .+|+||-...   -...++.+.+.   |+++|.++.
T Consensus       235 ~~d~vld~~g---~~~~~~~~~~~---l~~~g~~v~  264 (345)
T cd08286         235 GVDVVIEAVG---IPATFELCQEL---VAPGGHIAN  264 (345)
T ss_pred             CCCEEEECCC---CHHHHHHHHHh---ccCCcEEEE
Confidence            6998884322   12346677777   999998875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PRK05939 hypothetical protein; Provisional

Probab=84.19  E-value=22  Score=33.12  Aligned_cols=124  Identities=17%  Similarity=0.149  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +|....+-..++...++...+-+.+|.+.....+...+.++.+|+..+..-. ..... ..+...|.  .+.++..+-.+
T Consensus        46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~e  122 (397)
T PRK05939         46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDVQ  122 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCHH
Confidence            4555666666666666667777787776666555444555677877665321 12222 23444454  24554332222


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411          183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG  237 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g  237 (282)
                      .+....    ..+-.+|++....  ......++.+.++   .+. |-.+++|+..-.+
T Consensus       123 ~l~~~l----~~~tklV~vesp~NptG~v~dl~~I~~l---a~~~gi~livD~t~a~~  173 (397)
T PRK05939        123 NVAAAI----RPNTRMVFVETIANPGTQVADLAGIGAL---CRERGLLYVVDNTMTSP  173 (397)
T ss_pred             HHHHhC----CCCCeEEEEECCCCCCCCHHhHHHHHHH---HHHcCCEEEEECCcccc
Confidence            233322    2445678776442  2223445666665   554 4566777765333

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=84.02  E-value=9.9  Score=35.88  Aligned_cols=103  Identities=15%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH---hCC-----CCcEEEEEcchhhHHHHHHhCC
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV-----SHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~-----~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      +.+|-=||.  |+.++.++..+..+.+|+++|++++.++..++....   .++     ..+..+. .+. +   .     
T Consensus         6 ~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~-~---~-----   73 (425)
T PRK15182          6 EVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEI-E---K-----   73 (425)
T ss_pred             CCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCH-H---H-----
Confidence            356766765  778777777776567899999999887665521100   000     0011111 111 1   1     


Q ss_pred             CCCceeEEEEcCC-c------cccHHHH---HHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          192 EASSYDFAFVDAE-K------RMYQEYF---ELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       192 ~~~~fDlV~id~~-~------~~~~~~l---~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                       -...|++|+.-+ +      .+....+   +.+.+.   |++|.++|......+|.
T Consensus        74 -~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~---l~~g~lVI~~STv~pgt  126 (425)
T PRK15182         74 -IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTV---LNRGDIVVYESTVYPGC  126 (425)
T ss_pred             -HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHh---cCCCCEEEEecCCCCcc
Confidence             145688886533 1      2223333   344455   89999998888888886

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=83.94  E-value=15  Score=33.61  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=46.2

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCc---------------------cHHHHHHHHHHHhCCCCcEEEE
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK  176 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~g~~~~v~~~  176 (282)
                      ...+|+=||||. |......+...+ -++++.+|.+.                     .-.+.+++.++..+..-+++.+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            445899999973 333332222222 26899999864                     1234556666665544446666


Q ss_pred             Ecchh-hHHHHHHhCCCCCceeEEEEcCC
Q 023411          177 HGLAA-DSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       177 ~gd~~-~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      ..+.. +.+..+     -..+|+|+...+
T Consensus       102 ~~~~~~~~~~~~-----~~~~DlVid~~D  125 (338)
T PRK12475        102 VTDVTVEELEEL-----VKEVDLIIDATD  125 (338)
T ss_pred             eccCCHHHHHHH-----hcCCCEEEEcCC
Confidence            65553 223333     367899886554

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=83.82  E-value=7.4  Score=31.67  Aligned_cols=100  Identities=23%  Similarity=0.213  Sum_probs=57.9

Q ss_pred             EcccccHHHHHHHHHCCCCCEEEEEecCcc--HHH---HHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCCCCCceeEE
Q 023411          126 VGVYTGYSSLAIALVLPESGCLVACERDAR--SLE---VAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       126 IG~G~G~~t~~la~~~~~~~~v~~iD~s~~--~~~---~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +|=|.-.+++.+++..+....+++.-.+.+  ..+   .+.++++...-. .+++.. .|+.+.......  ....||.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~~--~~~~FDrI   79 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFRL--KNQRFDRI   79 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCcccccccc--cCCcCCEE
Confidence            566777788888888764556766655443  221   223444443222 244443 355543322211  15789999


Q ss_pred             EEcCCcc----------------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVDAEKR----------------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id~~~~----------------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +-+.++.                -...++..+.++   |+++|.|.+.
T Consensus        80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~---L~~~G~IhVT  124 (166)
T PF10354_consen   80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQL---LKPDGEIHVT  124 (166)
T ss_pred             EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEE
Confidence            8654311                134577888888   9999998883

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=83.69  E-value=16  Score=30.56  Aligned_cols=80  Identities=15%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCc-------------------cHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ...+|+=+|||. |......+...+ -++++.+|.+.                   .-.+.+.+.++.....-+++.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            456899999973 443333333332 36899999762                   223445555555443333444443


Q ss_pred             chhh-HHHHHHhCCCCCceeEEEEcCC
Q 023411          179 LAAD-SLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       179 d~~~-~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      ...+ .+..+     -..+|+|+...+
T Consensus        99 ~i~~~~~~~~-----~~~~D~Vi~~~d  120 (202)
T TIGR02356        99 RVTAENLELL-----INNVDLVLDCTD  120 (202)
T ss_pred             cCCHHHHHHH-----HhCCCEEEECCC
Confidence            3322 22233     267999886544

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=83.50  E-value=16  Score=34.22  Aligned_cols=126  Identities=18%  Similarity=0.188  Sum_probs=70.3

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec-CccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      -+|....+-..++.......++-+++|+......+...+.++.+|+..+. .........+.+...|..  +.++..+-.
T Consensus        68 ~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~--v~~vd~~d~  145 (403)
T PRK07810         68 GNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVE--TVFVDGEDL  145 (403)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcE--EEEECCCCH
Confidence            35556667777777777778888888887776655544555667776652 223333444455555542  555543322


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG  237 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g  237 (282)
                      +.+....    ...-.+|++..+.  ......++.+.++   .+. |-.+++|+..-.+
T Consensus       146 ~~l~~ai----~~~tklV~~esp~Nptg~v~dl~~I~~l---a~~~g~~vivD~a~a~~  197 (403)
T PRK07810        146 SQWEEAL----SVPTQAVFFETPSNPMQSLVDIAAVSEL---AHAAGAKVVLDNVFATP  197 (403)
T ss_pred             HHHHHhc----CcCceEEEEECCCCCCCeecCHHHHHHH---HHHcCCEEEEECCCCcc
Confidence            3333322    2345788875442  1122235556555   444 4567788886444

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=83.40  E-value=15  Score=32.73  Aligned_cols=101  Identities=21%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             HHhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~  191 (282)
                      .....++.+||=.|+| .|..+..+++... +.++++++.+++..+.+++    .|.+.-+.... .+..+.+...    
T Consensus       157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~----  227 (338)
T PRK09422        157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK----  227 (338)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh----
Confidence            3445677888888854 3455566666532 5789999999887776643    34422111100 1111222222    


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                       .+.+|.++.+...   ...++.+.+.   |+++|.++.
T Consensus       228 -~~~~d~vi~~~~~---~~~~~~~~~~---l~~~G~~v~  259 (338)
T PRK09422        228 -TGGAHAAVVTAVA---KAAFNQAVDA---VRAGGRVVA  259 (338)
T ss_pred             -cCCCcEEEEeCCC---HHHHHHHHHh---ccCCCEEEE
Confidence             2358877766543   2346777777   999998875

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=83.37  E-value=36  Score=31.16  Aligned_cols=121  Identities=10%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      |....+-..++........+=.++|+......+ ..+.++.+|+..+..-. ........++..|.  ++.++..+-.+.
T Consensus        52 pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~vd~~d~~~  128 (366)
T PRK08247         52 PTRGVLEQAIADLEGGDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYVNTASLKA  128 (366)
T ss_pred             chHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEECCCCHHH
Confidence            344444455555554445555666665555433 34454667776654322 23333444444553  244443221222


Q ss_pred             HHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCCC
Q 023411          184 LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVLW  235 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~  235 (282)
                      +....    ....++|++..+  +......++.+.++   .+. |..+|+|++..
T Consensus       129 l~~~i----~~~tklv~le~P~NP~~~~~dl~~I~~l---a~~~g~~lIvD~t~~  176 (366)
T PRK08247        129 IEQAI----TPNTKAIFIETPTNPLMQETDIAAIAKI---AKKHGLLLIVDNTFY  176 (366)
T ss_pred             HHHhc----ccCceEEEEECCCCCCCcHHHHHHHHHH---HHHcCCEEEEECCCc
Confidence            33222    235678887544  22233456666666   444 56778888863

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=83.26  E-value=17  Score=33.10  Aligned_cols=102  Identities=18%  Similarity=0.271  Sum_probs=56.4

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHhCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG  191 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~~~  191 (282)
                      ....++.+||=.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~---  250 (365)
T cd05279         179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT---  250 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh---
Confidence            345567888888764 2334455666653 2258888888877666533    344322222222  2222222221   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCC-CCcEEEEe
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIR-VGGIIVID  231 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lk-pgG~lv~d  231 (282)
                       .+.+|+|+-....   ...+....+.   |+ ++|.++.-
T Consensus       251 -~~~~d~vid~~g~---~~~~~~~~~~---l~~~~G~~v~~  284 (365)
T cd05279         251 -DGGVDYAFEVIGS---ADTLKQALDA---TRLGGGTSVVV  284 (365)
T ss_pred             -CCCCcEEEECCCC---HHHHHHHHHH---hccCCCEEEEE
Confidence             2568998843321   2345666777   88 99988863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=83.07  E-value=7.8  Score=34.40  Aligned_cols=79  Identities=13%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCce
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~f  196 (282)
                      +++||-.|+ +|..+..+++.+- .+.+|++++.++.............+..++++++.+|..+.  +..+     ...+
T Consensus         4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-----~~~~   77 (322)
T PLN02662          4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-----VDGC   77 (322)
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-----HcCC
Confidence            457887764 7888888887763 34688888877654322222221122234689999998753  2333     2467


Q ss_pred             eEEEEcCC
Q 023411          197 DFAFVDAE  204 (282)
Q Consensus       197 DlV~id~~  204 (282)
                      |.||..+.
T Consensus        78 d~Vih~A~   85 (322)
T PLN02662         78 EGVFHTAS   85 (322)
T ss_pred             CEEEEeCC
Confidence            99987654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=82.94  E-value=6.6  Score=38.36  Aligned_cols=94  Identities=15%  Similarity=0.118  Sum_probs=56.0

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      .+|+=+||  |..+..+++.+.+ +.+++.+|.+++..+.+++    .    ....++||+.+. .-+.+. .-++.|.+
T Consensus       418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~-~~L~~a-~i~~a~~v  485 (558)
T PRK10669        418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANE-EIMQLA-HLDCARWL  485 (558)
T ss_pred             CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCH-HHHHhc-CccccCEE
Confidence            45665555  6777778877643 4589999999987766653    1    268899998763 112111 14688877


Q ss_pred             EEcCCccc-cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          200 FVDAEKRM-YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       200 ~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++.-..+. .......+++    ..|...+++
T Consensus       486 iv~~~~~~~~~~iv~~~~~----~~~~~~iia  513 (558)
T PRK10669        486 LLTIPNGYEAGEIVASARE----KRPDIEIIA  513 (558)
T ss_pred             EEEcCChHHHHHHHHHHHH----HCCCCeEEE
Confidence            76533222 2222333333    466666665

>PRK10458 DNA cytosine methylase; Provisional

Probab=82.90  E-value=27  Score=33.42  Aligned_cols=43  Identities=16%  Similarity=0.213  Sum_probs=32.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  164 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~  164 (282)
                      .-+++|+-||.|++++-+-.. + .-.|.++|+++.+.+.-+.|+
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHc
Confidence            348999999999999888654 2 235789999988776666654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=82.66  E-value=6.4  Score=38.91  Aligned_cols=94  Identities=22%  Similarity=0.181  Sum_probs=56.0

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      .+|+=+|  .|..+..+++.+. .+.+++.+|.|++.++.+++    .|    ..++.||+.+. .-+...+ -++.|.+
T Consensus       401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~ag-i~~A~~v  468 (601)
T PRK03659        401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQL-ELLRAAG-AEKAEAI  468 (601)
T ss_pred             CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCH-HHHHhcC-CccCCEE
Confidence            3565544  5677777777653 24589999999998876654    23    57889998753 2221112 4677887


Q ss_pred             EEcCCccc-cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          200 FVDAEKRM-YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       200 ~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++-.+... .......+++    +.|...+++
T Consensus       469 v~~~~d~~~n~~i~~~~r~----~~p~~~Iia  496 (601)
T PRK03659        469 VITCNEPEDTMKIVELCQQ----HFPHLHILA  496 (601)
T ss_pred             EEEeCCHHHHHHHHHHHHH----HCCCCeEEE
Confidence            76544322 2222333333    567766665

>PRK06234 methionine gamma-lyase; Provisional

Probab=82.53  E-value=23  Score=33.02  Aligned_cols=128  Identities=11%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +|....+-..++.......++-+++|++.....+...+.++.+|+..+..-. ........++..|.  ++.++..+-.+
T Consensus        63 ~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd~~d~e  140 (400)
T PRK06234         63 NPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFVDTSNLE  140 (400)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEECCCCHH
Confidence            3445555555665555556777777777665555444555667766553221 22222333444443  24444322122


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      .+....    ...-++|++..+.  ......++.+.++++...+|-++++|+..-.+
T Consensus       141 ~l~~~i----~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~  193 (400)
T PRK06234        141 EVRNAL----KANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP  193 (400)
T ss_pred             HHHHHh----ccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence            232222    2345788876441  11122255555551112236788889886544

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=82.47  E-value=11  Score=31.99  Aligned_cols=83  Identities=16%  Similarity=0.041  Sum_probs=51.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--------HHHHHH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--------SLKALI  188 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--------~l~~l~  188 (282)
                      .++++||=.|+ +|..+..+++.+. .+.+|++++.+++..+...+.++..+. .++.++.+|..+        ....+.
T Consensus        10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945         10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence            36678898884 6777777776653 256999999988766555555554432 246677666531        111121


Q ss_pred             hCCCCCceeEEEEcCC
Q 023411          189 LNGEASSYDFAFVDAE  204 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~  204 (282)
                      +.  .+++|.|+..+.
T Consensus        88 ~~--~~~id~vi~~Ag  101 (247)
T PRK08945         88 EQ--FGRLDGVLHNAG  101 (247)
T ss_pred             HH--hCCCCEEEECCc
Confidence            11  257899987643

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.33  E-value=17  Score=32.45  Aligned_cols=82  Identities=20%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhC--CCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~--~~~  193 (282)
                      .++.||=-|.|+|. +..++..+ ..+++++..|++++..+...+.++..|   ++....+|..+.  +....++  .+-
T Consensus        37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            56788888888775 44444333 235789999999999988888888776   577788777543  2222211  124


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +..|+++.++.
T Consensus       113 G~V~ILVNNAG  123 (300)
T KOG1201|consen  113 GDVDILVNNAG  123 (300)
T ss_pred             CCceEEEeccc
Confidence            78899987755

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=82.30  E-value=18  Score=30.83  Aligned_cols=80  Identities=15%  Similarity=0.162  Sum_probs=45.3

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCc-------------------cHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ...+|+=+|||. |......+...+ -++++.+|.+.                   .-.+.+++.++..+..-+++.+..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            345899999973 444333333333 36888886433                   234556666666554434666655


Q ss_pred             chh-hHHHHHHhCCCCCceeEEEEcCC
Q 023411          179 LAA-DSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       179 d~~-~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      ... +....+     -..+|+|+...+
T Consensus        99 ~i~~~~~~~~-----~~~~DvVi~~~d  120 (228)
T cd00757          99 RLDAENAEEL-----IAGYDLVLDCTD  120 (228)
T ss_pred             eeCHHHHHHH-----HhCCCEEEEcCC
Confidence            442 222333     256999997655

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=82.30  E-value=19  Score=32.02  Aligned_cols=97  Identities=12%  Similarity=0.094  Sum_probs=52.2

Q ss_pred             CCCEEEEE--cc-cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          119 GAQRCIEV--GV-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       119 ~~~~VLEI--G~-G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .+..++=+  |+ +.|..+..+++..  +.++++++.+++..+.+++    .|.+.-+.....+..+.+....   ....
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~---~~~~  212 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI---AKLN  212 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh---CCCC
Confidence            34445444  33 3455666677765  4789999998877766654    3443212211122222222221   1246


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++|-.....    ......+.   ++++|.++.-
T Consensus       213 ~d~vid~~g~~----~~~~~~~~---l~~~G~~v~~  241 (324)
T cd08291         213 ATIFFDAVGGG----LTGQILLA---MPYGSTLYVY  241 (324)
T ss_pred             CcEEEECCCcH----HHHHHHHh---hCCCCEEEEE
Confidence            89888433322    13344566   8999987763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.13  E-value=13  Score=35.03  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             EEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +|+=+|+  |..+..+++.+.. +..|+.+|.+++.++.+++..       .+.++.||+.+.. .+...+ -..+|.|+
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~-~l~~~~-~~~a~~vi   70 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPD-VLREAG-AEDADLLI   70 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHH-HHHHcC-CCcCCEEE
Confidence            5666665  7888888887642 468999999998766554321       2788889886531 221111 36788888


Q ss_pred             EcCCc
Q 023411          201 VDAEK  205 (282)
Q Consensus       201 id~~~  205 (282)
                      +....
T Consensus        71 ~~~~~   75 (453)
T PRK09496         71 AVTDS   75 (453)
T ss_pred             EecCC
Confidence            76543

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=82.13  E-value=5.1  Score=32.53  Aligned_cols=100  Identities=12%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE-EEEEcchhhHHHHHHhCCCCCceeE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV-KIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v-~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +++++-+|+..-..-.....+ + ..++++||.++--+.   +.     ..+++ ++...|........     .++||+
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~-G-A~~iltveyn~L~i~---~~-----~~dr~ssi~p~df~~~~~~y-----~~~fD~   66 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQH-G-AAKILTVEYNKLEIQ---EE-----FRDRLSSILPVDFAKNWQKY-----AGSFDF   66 (177)
T ss_pred             CceEEEEecCCchhhHHHHHc-C-CceEEEEeecccccC---cc-----cccccccccHHHHHHHHHHh-----hccchh
Confidence            467888888755443333332 2 468999998753211   11     11222 22223333222222     578999


Q ss_pred             EEEcCC-----------ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          199 AFVDAE-----------KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       199 V~id~~-----------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +.+-+.           +-+....++.+.++..+|||||.+++.=.+
T Consensus        67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv  113 (177)
T PF03269_consen   67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV  113 (177)
T ss_pred             hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence            765322           112222334444444449999999986444

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.01  E-value=6.8  Score=36.88  Aligned_cols=75  Identities=20%  Similarity=0.168  Sum_probs=49.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .++|+=+|+  |..+..+++.+.. +..|+.+|.+++..+..++..      ..+.++.||+.+. ..+... .-..+|.
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~-~~L~~~-~~~~a~~  300 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ-ELLEEE-GIDEADA  300 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH-HHHHhc-CCccCCE
Confidence            567887776  6777777777643 568999999998776655432      1367899998653 222111 1467888


Q ss_pred             EEEcCC
Q 023411          199 AFVDAE  204 (282)
Q Consensus       199 V~id~~  204 (282)
                      |++-..
T Consensus       301 vi~~~~  306 (453)
T PRK09496        301 FIALTN  306 (453)
T ss_pred             EEECCC
Confidence            887544

>PRK08324 short chain dehydrogenase; Validated

Probab=81.88  E-value=16  Score=36.60  Aligned_cols=82  Identities=18%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .+++||-.|+ +|.++..+++.+. .+.+|+.+|.+++.++.+.+.+...   .++.++.+|..+.  +.......  ..
T Consensus       421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3468887775 4556666665542 3578999999987766555544322   3588888887542  11111100  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +.+|+||..+.
T Consensus       497 g~iDvvI~~AG  507 (681)
T PRK08324        497 GGVDIVVSNAG  507 (681)
T ss_pred             CCCCEEEECCC
Confidence            57899988655

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=81.68  E-value=27  Score=32.43  Aligned_cols=124  Identities=17%  Similarity=0.183  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      |....+-..++.......++=.++|++.+...+...+.++.+|+..+..-. ............+.  .+.++...-.+.
T Consensus        52 pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e~  129 (386)
T PRK08045         52 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQGDEQA  129 (386)
T ss_pred             ccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeCCCCHHH
Confidence            334444455555444445666666666665555544555667776664332 23333333332221  244432211122


Q ss_pred             HHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411          184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG  237 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g  237 (282)
                      +....    ..+.++|++..+.  ......++.+.++   .+. |.++++|+....+
T Consensus       130 l~~~l----~~~tklV~l~sP~NPtG~v~di~~I~~i---a~~~g~~vivDeay~~~  179 (386)
T PRK08045        130 LRAAL----AEKPKLVLVESPSNPLLRVVDIAKICHL---AREAGAVSVVDNTFLSP  179 (386)
T ss_pred             HHHhc----ccCCeEEEEECCCCCCCEecCHHHHHHH---HHHcCCEEEEECCCCcc
Confidence            22221    2355788876442  1111224555555   443 6678888886554

>PRK05967 cystathionine beta-lyase; Provisional

Probab=81.65  E-value=33  Score=32.06  Aligned_cols=122  Identities=13%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccH-HHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +|....+-..++....+...+=+.+|.+.+...+...+.++.+|+..+..-.. ....++..+..|.  +++++..+..+
T Consensus        63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e  140 (395)
T PRK05967         63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA  140 (395)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence            44444444444444444445667777777766665556666777776543322 2233455555554  35665433223


Q ss_pred             HHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCC-CcEEEEeCCC
Q 023411          183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRV-GGIIVIDNVL  234 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~  234 (282)
                      .+....    .....+|++..+  +......++.+.++   .+. |.++++|++.
T Consensus       141 ~l~~al----~~~TklV~lesPsNP~l~v~dl~~I~~l---a~~~g~~vvVD~t~  188 (395)
T PRK05967        141 GIAKLM----RPNTKVVHTEAPGSNTFEMQDIPAIAEA---AHRHGAIVMMDNTW  188 (395)
T ss_pred             HHHHhc----CcCceEEEEECCCCCCCcHHHHHHHHHH---HHHhCCEEEEECCc
Confidence            333332    244578888754  23344456667666   554 4567777775

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=81.62  E-value=14  Score=33.54  Aligned_cols=99  Identities=23%  Similarity=0.359  Sum_probs=54.5

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       117 ~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..++.+||-.|+| .|..+..+++..+  .+ +++++.+++..+.+++    .|...-+.....+..+.+....   ...
T Consensus       185 ~~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~~  255 (367)
T cd08263         185 VRPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT---GGR  255 (367)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh---CCC
Confidence            3566778766654 4555566676653  55 8999888776655532    3432111111112222222221   135


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .+|+|+-.....   .....+.++   |+++|.++.
T Consensus       256 ~~d~vld~vg~~---~~~~~~~~~---l~~~G~~v~  285 (367)
T cd08263         256 GVDVVVEALGKP---ETFKLALDV---VRDGGRAVV  285 (367)
T ss_pred             CCCEEEEeCCCH---HHHHHHHHH---HhcCCEEEE
Confidence            699998433222   245667777   999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=81.56  E-value=3.4  Score=30.14  Aligned_cols=72  Identities=21%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC---CCCcc-------cCCcCCChhhHHHHHHHHHhhhC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL---WHGKV-------ADQMVNDAKTISIRNFNKNLMED  262 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~---~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~  262 (282)
                      ...+|++++|....-.++.+..+...   ++-||++++=-.-   |+...       ..+...+.....++.|.+.+.++
T Consensus         9 G~e~~~~i~d~~~g~~pnal~a~~gt---v~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~~~~~~F~~rf~~~L~~~   85 (92)
T PF08351_consen    9 GQEFDLLIFDAFEGFDPNALAALAGT---VRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYTDVTPRFIRRFIRSLQSD   85 (92)
T ss_dssp             T--BSSEEEE-SS---HHHHHHHHTT---B-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS-B--HHHHHHHHHHHCCS
T ss_pred             CCccCEEEEEccCCCCHHHHHHHhcc---eecCeEEEEEcCCHHHhhhcchHHHhccccCCCCcccHHHHHHHHHHHHHC
Confidence            47899999999877777877777777   9999988773221   22211       11111222344677888888888


Q ss_pred             CCeEE
Q 023411          263 ERVSI  267 (282)
Q Consensus       263 ~~~~~  267 (282)
                      +++..
T Consensus        86 ~~i~i   90 (92)
T PF08351_consen   86 PGIII   90 (92)
T ss_dssp             TTS--
T ss_pred             cCCcc
Confidence            77643

; PDB: 2ZPA_B.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=81.34  E-value=27  Score=31.22  Aligned_cols=100  Identities=18%  Similarity=0.219  Sum_probs=54.6

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       117 ~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..++.+|+-.|+| .|..+..+++..  +.+ |++++.+++..+.+++    .|...-+.....+..+.+..+.   ...
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~---~~~  229 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT---DGE  229 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc---CCC
Confidence            3456677666654 355566677765  354 8888777665544433    3442212222223323222221   135


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+|+++-.....   ..+..+.+.   |+++|.++.-
T Consensus       230 ~~d~vld~~g~~---~~~~~~~~~---l~~~g~~v~~  260 (340)
T TIGR00692       230 GVDVFLEMSGAP---KALEQGLQA---VTPGGRVSLL  260 (340)
T ss_pred             CCCEEEECCCCH---HHHHHHHHh---hcCCCEEEEE
Confidence            689998653322   345667777   9999987763

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PLN02494 adenosylhomocysteinase

Probab=81.28  E-value=28  Score=33.35  Aligned_cols=88  Identities=13%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+++|+-+|+|. |......++.+  +.+|+.+|.++.....+..    .|.    .+.  +..+.+         ...
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal---------~~A  310 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV---------SEA  310 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH---------hhC
Confidence            3578999999873 44444455544  4799999999865433321    222    221  222221         356


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+|+......+.  ........   +|+|++|+--
T Consensus       311 DVVI~tTGt~~v--I~~e~L~~---MK~GAiLiNv  340 (477)
T PLN02494        311 DIFVTTTGNKDI--IMVDHMRK---MKNNAIVCNI  340 (477)
T ss_pred             CEEEECCCCccc--hHHHHHhc---CCCCCEEEEc
Confidence            999874443322  12445566   8999998873

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=81.28  E-value=22  Score=31.80  Aligned_cols=101  Identities=24%  Similarity=0.333  Sum_probs=57.5

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      .+...++.+||-.|+|. |..+..+++..+  .+ +++++.+++..+.++    ..|...-+...... .+.+....   
T Consensus       154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~---  223 (343)
T cd08236         154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT---  223 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh---
Confidence            34455677888888754 667777787764  54 899988876655443    33432111111111 12222221   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ....+|++|-....   ...+..+.+.   |+++|.++.
T Consensus       224 ~~~~~d~vld~~g~---~~~~~~~~~~---l~~~G~~v~  256 (343)
T cd08236         224 EGRGADLVIEAAGS---PATIEQALAL---ARPGGKVVL  256 (343)
T ss_pred             CCCCCCEEEECCCC---HHHHHHHHHH---hhcCCEEEE
Confidence            12459999854322   2345667777   999998775

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=81.12  E-value=3.6  Score=35.87  Aligned_cols=106  Identities=19%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCC-----------CCEEEEEecCccHHHHHH-------------HHHH---------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPE-----------SGCLVACERDARSLEVAK-------------KYYE---------  165 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~-----------~~~v~~iD~s~~~~~~a~-------------~~~~---------  165 (282)
                      +.-.|+|+|-|+|...+..-+.+++           .-++++++.+|-......             +..+         
T Consensus        58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~  137 (252)
T COG4121          58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC  137 (252)
T ss_pred             cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence            3447999999999988777665532           125889998774322111             1111         


Q ss_pred             ----HhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cc-cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          166 ----RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM-YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       166 ----~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~-~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                          ..| .-..++..||+.+.++......  .++|..|.|+-.     +. ..+++..+.+.   .++||.+.-
T Consensus       138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~~--~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~---~~~~~~l~t  206 (252)
T COG4121         138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRRR--PGTDAWFLDGFRPVKNPEMWEDELLNLMARI---PYRDPTLAT  206 (252)
T ss_pred             HHhhhcc-hheeeeeeeehhhcCCcccccc--cCccEEecCCccccCChhhccHHHHHHHHhh---cCCCCceec
Confidence                112 1246778888887766652111  179999999752     11 24466777776   999998765

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=81.08  E-value=6.4  Score=39.09  Aligned_cols=72  Identities=21%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      .+|+=+|+  |..+..+++.+.. +-.++.+|.|++.++.+++    .|    ..++.||+.+. .-+...+ -++.|.+
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~-~~L~~ag-i~~A~~v  468 (621)
T PRK03562        401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRM-DLLESAG-AAKAEVL  468 (621)
T ss_pred             CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCH-HHHHhcC-CCcCCEE
Confidence            56776666  5566666665432 3579999999998877754    22    57889998763 1222112 4678887


Q ss_pred             EEcCC
Q 023411          200 FVDAE  204 (282)
Q Consensus       200 ~id~~  204 (282)
                      ++.-+
T Consensus       469 vv~~~  473 (621)
T PRK03562        469 INAID  473 (621)
T ss_pred             EEEeC
Confidence            76544

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=81.08  E-value=30  Score=32.15  Aligned_cols=126  Identities=16%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +|....+-..++....+..++=..+|+..+...+...+.++.+|+..+..-. ............|.  ++.++...-.+
T Consensus        52 npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi--~v~~vd~~d~e  129 (388)
T PRK08861         52 NPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF--KVQFVDQSDAA  129 (388)
T ss_pred             CchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence            4455556666666666778887777777766666554555566666543322 12222232322222  23333221112


Q ss_pred             HHHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCC-CCcEEEEeCCCCCCc
Q 023411          183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIR-VGGIIVIDNVLWHGK  238 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~Lk-pgG~lv~dd~~~~g~  238 (282)
                      .+....    ...-++|++..+  +......++.+.++   .+ .|.++++|+..-.+.
T Consensus       130 ~l~~~i----~~~tklV~lesP~NPtG~v~dl~~I~~l---a~~~gi~vIvDea~~~~~  181 (388)
T PRK08861        130 ALDAAL----AKKPKLILLETPSNPLVRVVDIAELCQK---AKAVGALVAVDNTFLTPV  181 (388)
T ss_pred             HHHHhc----CcCCeEEEEECCCCCCCcccCHHHHHHH---HHHcCCEEEEECCccccc
Confidence            222221    245688887544  11111123445554   33 356788888875553

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=80.79  E-value=11  Score=27.56  Aligned_cols=67  Identities=18%  Similarity=0.152  Sum_probs=42.7

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      ++|| +-||+|.+|-.++..+                   ++.+++.|++  +++...+..+....      ...+|+|+
T Consensus         4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~--~~v~a~~~~~~~~~------~~~~Dvil   55 (95)
T TIGR00853         4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVP--VKIAAGSYGAAGEK------LDDADVVL   55 (95)
T ss_pred             cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCc--EEEEEecHHHHHhh------cCCCCEEE
Confidence            4677 6689998776666432                   4555666765  77777777654332      35789999


Q ss_pred             EcCCccccHHHHHHHHHh
Q 023411          201 VDAEKRMYQEYFELLLQL  218 (282)
Q Consensus       201 id~~~~~~~~~l~~~~~~  218 (282)
                      +.+...+   .++.+.+.
T Consensus        56 l~pqi~~---~~~~i~~~   70 (95)
T TIGR00853        56 LAPQVAY---MLPDLKKE   70 (95)
T ss_pred             ECchHHH---HHHHHHHH
Confidence            8766443   34555555

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=80.76  E-value=2.3  Score=37.21  Aligned_cols=73  Identities=19%  Similarity=0.303  Sum_probs=43.6

Q ss_pred             HHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHH
Q 023411          134 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE  213 (282)
Q Consensus       134 t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~  213 (282)
                      +..+.+..+ ..+|+++|.+++.++.|.+    .|..+..   ..+    ...+      ..+|+|++..+.......++
T Consensus         2 A~aL~~~g~-~~~v~g~d~~~~~~~~a~~----~g~~~~~---~~~----~~~~------~~~DlvvlavP~~~~~~~l~   63 (258)
T PF02153_consen    2 ALALRKAGP-DVEVYGYDRDPETLEAALE----LGIIDEA---STD----IEAV------EDADLVVLAVPVSAIEDVLE   63 (258)
T ss_dssp             HHHHHHTTT-TSEEEEE-SSHHHHHHHHH----TTSSSEE---ESH----HHHG------GCCSEEEE-S-HHHHHHHHH
T ss_pred             hHHHHhCCC-CeEEEEEeCCHHHHHHHHH----CCCeeec---cCC----HhHh------cCCCEEEEcCCHHHHHHHHH
Confidence            344555432 5799999999987766543    3443321   111    1222      45699999888888888888


Q ss_pred             HHHHhhcCCCCCcE
Q 023411          214 LLLQLLLQIRVGGI  227 (282)
Q Consensus       214 ~~~~~~~~LkpgG~  227 (282)
                      .+.+.   +++|++
T Consensus        64 ~~~~~---~~~~~i   74 (258)
T PF02153_consen   64 EIAPY---LKPGAI   74 (258)
T ss_dssp             HHHCG---S-TTSE
T ss_pred             Hhhhh---cCCCcE
Confidence            88887   777644

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=80.64  E-value=5.9  Score=35.53  Aligned_cols=35  Identities=11%  Similarity=0.169  Sum_probs=26.1

Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ...+|+||+........+.++.+.++   +.+++.++.
T Consensus        70 ~~~~D~vilavK~~~~~~~~~~l~~~---~~~~~~iv~  104 (313)
T PRK06249         70 MPPCDWVLVGLKTTANALLAPLIPQV---AAPDAKVLL  104 (313)
T ss_pred             cCCCCEEEEEecCCChHhHHHHHhhh---cCCCCEEEE
Confidence            36799999876655566677788887   888887653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=80.55  E-value=19  Score=32.13  Aligned_cols=95  Identities=14%  Similarity=0.117  Sum_probs=52.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+++|+=||+|. |......+..+  +++|+.+|.+++..+.+    ...|.    +++  +. +.+...     -..+|
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~----~~~G~----~~~--~~-~~l~~~-----l~~aD  212 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARI----TEMGL----SPF--HL-SELAEE-----VGKID  212 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH----HHcCC----eee--cH-HHHHHH-----hCCCC
Confidence            578999999864 22333344443  47999999997654433    23332    222  11 222232     25789


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      +||...+...   .-+...+.   ++||++ ++|-...+|.
T Consensus       213 iVI~t~p~~~---i~~~~l~~---~~~g~v-IIDla~~pgg  246 (296)
T PRK08306        213 IIFNTIPALV---LTKEVLSK---MPPEAL-IIDLASKPGG  246 (296)
T ss_pred             EEEECCChhh---hhHHHHHc---CCCCcE-EEEEccCCCC
Confidence            9998643221   12334445   788664 5554554444

>PRK06940 short chain dehydrogenase; Provisional

Probab=80.52  E-value=22  Score=30.90  Aligned_cols=79  Identities=20%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhC-CCCCceeE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-GEASSYDF  198 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~-~~~~~fDl  198 (282)
                      .+|=.|+  |.++..+++.+..+.+|+.++.+++.++...+.++..+  .++.++.+|..+.  ...+... ...+.+|.
T Consensus         4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            4555564  57888888888656899999998776655555554433  3577888887552  1222111 01367899


Q ss_pred             EEEcCC
Q 023411          199 AFVDAE  204 (282)
Q Consensus       199 V~id~~  204 (282)
                      ++..+.
T Consensus        80 li~nAG   85 (275)
T PRK06940         80 LVHTAG   85 (275)
T ss_pred             EEECCC
Confidence            988765

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=80.52  E-value=9.9  Score=33.49  Aligned_cols=87  Identities=17%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +|.=||+|  ..+..++..+. .+.+|+++|.+++.++.+.+.    |.   +.....+.    ..      ....|+||
T Consensus         2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~----~~------~~~aDlVi   62 (279)
T PRK07417          2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL----SL------LKDCDLVI   62 (279)
T ss_pred             eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH----hH------hcCCCEEE
Confidence            45557765  44444444332 145899999998876655432    22   11111111    11      24568888


Q ss_pred             EcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          201 VDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       201 id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +..+.......++.+.+.   ++++. ++.|
T Consensus        63 lavp~~~~~~~~~~l~~~---l~~~~-ii~d   89 (279)
T PRK07417         63 LALPIGLLLPPSEQLIPA---LPPEA-IVTD   89 (279)
T ss_pred             EcCCHHHHHHHHHHHHHh---CCCCc-EEEe
Confidence            877766666666777666   76653 3443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.24  E-value=20  Score=31.65  Aligned_cols=95  Identities=13%  Similarity=0.131  Sum_probs=52.1

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--------CCC---------CcEEEEEcchhhH
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVS---------HKVKIKHGLAADS  183 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------g~~---------~~v~~~~gd~~~~  183 (282)
                      .+|.=||+|.=..++...-... +.+|+.+|.+++.++.+++.++..        .+.         .++++. .|..  
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~--   79 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLA--   79 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHH--
Confidence            4677788875333332222212 468999999999888877654321        110         123322 2221  


Q ss_pred             HHHHHhCCCCCceeEEEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEE
Q 023411          184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                        ..     -..-|+||...+..  .....++.+.+.   ++++.+|+
T Consensus        80 --~a-----~~~aDlVieavpe~~~~k~~~~~~l~~~---~~~~~ii~  117 (287)
T PRK08293         80 --EA-----VKDADLVIEAVPEDPEIKGDFYEELAKV---APEKTIFA  117 (287)
T ss_pred             --HH-----hcCCCEEEEeccCCHHHHHHHHHHHHhh---CCCCCEEE
Confidence              11     24568888765522  344566777776   76666543

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=80.16  E-value=18  Score=33.57  Aligned_cols=122  Identities=16%  Similarity=0.174  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHH-HHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSL-EVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~-~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      |....+-..++.......++-.++|+......+...+.++.+|+..+..-... ...+. +...|.  ++.+...|. +.
T Consensus        53 p~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~-~~~~g~--~v~~~~~d~-~~  128 (385)
T PRK08574         53 PTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKS-LEKFGV--KVVLAYPST-ED  128 (385)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-hhccCc--EEEEECCCH-HH
Confidence            33444444555555555677677777666655555565566676655433222 22222 233333  244443343 22


Q ss_pred             HHHHHhCCCCC-ceeEEEEcCCcc--ccHHHHHHHHHhhcCCCC-CcEEEEeCCCCCC
Q 023411          184 LKALILNGEAS-SYDFAFVDAEKR--MYQEYFELLLQLLLQIRV-GGIIVIDNVLWHG  237 (282)
Q Consensus       184 l~~l~~~~~~~-~fDlV~id~~~~--~~~~~l~~~~~~~~~Lkp-gG~lv~dd~~~~g  237 (282)
                      +....    .. +.++|++.....  .....++.+.++   .+. |..+++|+..-.+
T Consensus       129 l~~~i----~~~~tklV~ie~p~NPtG~v~dl~~I~~l---a~~~gi~livD~t~a~~  179 (385)
T PRK08574        129 IIEAI----KEGRTKLVFIETMTNPTLKVIDVPEVAKA---AKELGAILVVDNTFATP  179 (385)
T ss_pred             HHHhc----CccCceEEEEECCCCCCCEecCHHHHHHH---HHHcCCEEEEECCCCcc
Confidence            33222    23 568888764421  111224555555   444 5567778875333

>PRK08251 short chain dehydrogenase; Provisional

Probab=80.13  E-value=18  Score=30.56  Aligned_cols=83  Identities=19%  Similarity=0.119  Sum_probs=52.1

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhC--CCCCc
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILN--GEASS  195 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~--~~~~~  195 (282)
                      +++|-.| |+|..+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+..  .....+  ...+.
T Consensus         3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4677777 46778888777763 246899999988777666555544322345888888876531  111110  01357


Q ss_pred             eeEEEEcCC
Q 023411          196 YDFAFVDAE  204 (282)
Q Consensus       196 fDlV~id~~  204 (282)
                      .|.+|..+.
T Consensus        82 id~vi~~ag   90 (248)
T PRK08251         82 LDRVIVNAG   90 (248)
T ss_pred             CCEEEECCC
Confidence            899988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
3cbg_A	232	Functional And Structural Characterization Of A Cat		8e-51
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		2e-46
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		4e-41
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		9e-41
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		2e-34
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		1e-32
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		4e-32
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		4e-23
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		5e-19
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		2e-16
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		3e-09
3dr5_A	221	Crystal Structure Of The Q8nrd3_corgl Protein From		3e-05
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		7e-05
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		8e-05
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		8e-05
1dl5_A	317	Protein-L-Isoaspartate O-Methyltransferase Length =		2e-04
3bwm_A	214	Crystal Structure Of Human Catechol O-Methyltransfe		2e-04
3a7e_A	216	Crystal Structure Of Human Comt Complexed With Sam		3e-04
3bwy_A	214	Crystal Structure Of Human 108m Catechol O- Methylt		6e-04

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  197 bits (500), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 93/222 (41%), Positives = 146/222 (65%), Gaps = 4/222 (1%)
Query: 62  NKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
            K +    P LY Y+   +  +   L QLR ETA + G+ MQ+SP+QAQ L +L+ + GA
Sbjct: 14  GKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGA 73
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           ++ +E+GV+ GYS+LA+AL LP  G ++AC++D  +  +AKKY+++AGV+ K+ ++ G A
Sbjct: 74  KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133
Query: 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVA 240
             +L+ L        +D  F+DA+KR Y  Y+E        +R GG++VIDNVLWHGKV 
Sbjct: 134 LATLEQLTQGKPLPEFDLIFIDADKRNYPRYYE---IGLNLLRRGGLMVIDNVLWHGKVT 190
Query: 241 DQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           +    +A+T  ++ FN++L +DERV IS++P+GDGMT+  K+
Sbjct: 191 EVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK 232

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/217 (41%), Positives = 141/217 (64%), Gaps = 5/217 (2%)
Query: 68  VTPPLYDYILR-NVREPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125
           +TP LY Y+L+ ++REP +L +LREET         Q +P+QAQLLA+LV++  A++ I+
Sbjct: 11  LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVID 70
Query: 126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185
           +G +TGYS++A  L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++   A D+L 
Sbjct: 71  IGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130
Query: 186 ALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVN 245
            LI  G+A  YD  ++DA+K     Y+E        +R GG+I +DNVL  G+VAD+   
Sbjct: 131 ELIHAGQAWQYDLIYIDADKANTDLYYE---ESLKLLREGGLIAVDNVLRRGQVADEENQ 187
Query: 246 DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
                 IR FN+ + +DERV   ++PIGDG+T+ +K+
Sbjct: 188 SENNQLIRLFNQKVYKDERVDXILIPIGDGLTLARKK 224

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/216 (37%), Positives = 131/216 (60%), Gaps = 4/216 (1%)
Query: 66  ISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +S+TP LY Y+L  ++RE   L  LR+ET+ M  + MQV+P+QAQ + ML+++  A++ +
Sbjct: 6   LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65
Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G +TGYS+LA++L LP+ G ++ C+ +    + A  Y+  A   HK+K++ G A D+L
Sbjct: 66  ELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125
Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMV 244
            +L+  G    +DF F+DA+K  Y  Y+E        +   G+I IDN+ W GKV D   
Sbjct: 126 HSLLNEGGEHQFDFIFIDADKTNYLNYYE---LALKLVTPKGLIAIDNIFWDGKVIDPND 182
Query: 245 NDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQ 280
              +T  I+  N+ +  D RV +S++ I DGM + Q
Sbjct: 183 TSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQ 218

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  163 bits (413), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 89/233 (38%), Positives = 138/233 (59%), Gaps = 15/233 (6%)
Query: 62  NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +++ IS+T  L +YI RN VREP+   +LR+ET  +  + MQ+SP++ Q L +L +I GA
Sbjct: 2   SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           +R IE+G +TGYSSL  A  LPE G ++ C+       VA+KY++  G+ +K+ +K G A
Sbjct: 62  KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 181 ADSLKALILNGEASSY--DFA---------FVDAEKRMYQEYFEXXXXXXXXIRVGGIIV 229
            ++L+ LI +  A S+  DFA         F+DA+K  Y  Y+           +   ++
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGL---LI 178
Query: 230 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
            DNVLW G VAD    +  T+ IR FN+ +  D  V +S+VPI DG+++ +KR
Sbjct: 179 ADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR 231

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 17/222 (7%)
Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++ A+  +E+GV
Sbjct: 29  LYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGV 88
Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
           YTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G A   L  +I
Sbjct: 89  YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI 148
Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVNDA 247
            + +   SYDF FVDA+K  Y  Y +        ++VGG+I  DN LW+G V      DA
Sbjct: 149 KDEKNHGSYDFIFVDADKDNYLNYHK---RLIDLVKVGGVIGYDNTLWNGSVV--APPDA 203
Query: 248 KTIS----IRNF----NKNLMEDERVSISMVPIGDGMTICQK 281
                    R+F    NK L  D R+ I M+P+GDG+TIC++
Sbjct: 204 PLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 245

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 22/221 (9%)
Query: 75  YILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTG 131
           YILR     RE   L++LRE       S M  SP   QL++ +++++ A++ IEVGV+TG
Sbjct: 23  YILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTG 82
Query: 132 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL--IL 189
           YS L  AL +P+ G + A + D  + E+   +  +AGV HK+     + +D++ AL  +L
Sbjct: 83  YSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF---IESDAMLALDNLL 139
Query: 190 NGEAS--SYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVA------- 240
            G+ S  SYDF FVDA+K  Y +Y E        ++VGGI+  DN LW G VA       
Sbjct: 140 QGQESEGSYDFGFVDADKPNYIKYHE---RLMKLVKVGGIVAYDNTLWGGTVAQPESEVP 196
Query: 241 DQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
           D M  + +  ++   NK L  D R+ I  +P+GDG+T C++
Sbjct: 197 DFMKENRE--AVIELNKLLAADPRIEIVHLPLGDGITFCRR 235

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 8/227 (3%)
Query: 60  YSNKQVISVTPP----LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           +  ++   + PP    L+ Y+L R++RE   LR LR  T         ++ +QAQLLA L
Sbjct: 5   WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64
Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
            +++ A++ +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ 
Sbjct: 65  ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124
Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVL 234
           ++   A ++L  L+  GEA ++D A VDA+K     Y+E        +R GGI+ +  VL
Sbjct: 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYE---RCLQLLRPGGILAVLRVL 181
Query: 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
           W GKV      D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 182 WRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 4/164 (2%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
           VSP Q + L +LVQI GA+  +E+G   GYS++ +A  L   G +V  E   +  ++A+ 
Sbjct: 42  VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXI 222
             ERA ++ +V+++ GLA DSL+  I N +   +DF F+DA+K+    YFE         
Sbjct: 102 NIERANLNDRVEVRTGLALDSLQQ-IENEKYEPFDFIFIDADKQNNPAYFEWALKLS--- 157
Query: 223 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 266
           R G +I+ DNV+  G+V D   ND +   IR F + +  + RVS
Sbjct: 158 RPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVS 201

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
           V+ +Q Q LA+LV++  A+R +E+G   GYS++  A  LP  G L+  E DA   +VA++
Sbjct: 47  VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARE 106
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXI 222
             + AGV  +V ++ G A  SL++L   GE  ++D  F+DA+K     Y           
Sbjct: 107 NLQLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYS--- 160
Query: 223 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS-ISMVPIG----DGMT 277
           R G +I+ DNV+  G+V +    D +   +R F +    + R++  ++  +G    DG T
Sbjct: 161 RPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEXXGAEPRLTATALQTVGTKGWDGFT 220
Query: 278 IC 279
           + 
Sbjct: 221 LA 222

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 11/176 (6%)
Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           L  L++     R +E+G   GYS++  A  LPE+  +V+ ERD R  E A K+ +  G+ 
Sbjct: 46  LLHLLKXAAPARILEIGTAIGYSAIRXAQALPEA-TIVSIERDERRYEEAHKHVKALGLE 104
Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVI 230
            ++++  G A    + L L      +D  F+DA K  Y+ +F+        +R GG+I+ 
Sbjct: 105 SRIELLFGDALQLGEKLELY---PLFDVLFIDAAKGQYRRFFDXYSPX---VRPGGLILS 158
Query: 231 DNVLWHGKVADQMVNDAK----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           DNVL+ G VA+  +   +       I  +N+ L+E  +    + P+GDG+ I  KR
Sbjct: 159 DNVLFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 169
           L+  L++    +  +E+G   GYSS   A +  +   +   ER+   ++ AK+       
Sbjct: 62  LIKQLIRXNNVKNILEIGTAIGYSSXQFASI-SDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIV 229
            ++V+I  G A +  +    N     YD  F+DA K   +++FE        ++  G+++
Sbjct: 121 ENQVRIIEGNALEQFE----NVNDKVYDXIFIDAAKAQSKKFFEIYTPL---LKHQGLVI 173
Query: 230 IDNVLWHGKVADQMVNDAKTI-----SIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
            DNVL+HG V+D  +  ++ +      ++++N+ L++    + + + I DG+ I  K
Sbjct: 174 TDNVLYHGFVSDIGIVRSRNVRQXVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230

>pdb|3DR5|A Chain A, Crystal Structure Of The Q8nrd3_corgl Protein From Corynebacterium Glutamicum. Northeast Structural Genomics Consortium Target Cgr117 Length = 221

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 31/193 (16%)
Query: 104 SPDQ--AQLLAMLVQIL---GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158
           +PD+   QLL  L       G+   I +    G   L I   L ++  L   + ++    
Sbjct: 36  APDEXTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQR 95
Query: 159 VAKKYYERAG---------VSHKVKIKHGLAADSLKALILNGEASSYDF-AFVDAEKRMY 208
            AK  +  AG         +S  + +   LA DS +  ++ G+ S  D  A VDA   + 
Sbjct: 96  QAKALFREAGYSPSRVRFLLSRPLDVXSRLANDSYQ--LVFGQVSPXDLKALVDAAWPL- 152
Query: 209 QEYFEXXXXXXXXIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS 268
                        +R GG +V+ + L  G +ADQ   D  T + R+ ++ +   E   ++
Sbjct: 153 -------------LRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVA 199
Query: 269 MVPIGDGMTICQK 281
            +P+G G+T+  K
Sbjct: 200 RLPLGAGLTVVTK 212

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 12  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 72  SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHG 237
             + D  F+D  K  Y             +R G +++ DNV+  G
Sbjct: 132 VDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADNVIVPG 175

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 14  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 73
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 74  SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 133
Query: 193 ASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHG 237
             + D  F+D  K  Y             +R G +++ DNV+  G
Sbjct: 134 VDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADNVIVPG 177

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 3/165 (1%)
Query: 75  YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
           Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y GY
Sbjct: 12  YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
           S++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L    +
Sbjct: 72  SAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFEXXXXXXXXIRVGGIIVIDNVLWHG 237
             + D  F+D  K  Y             +R G +++ DNV+  G
Sbjct: 132 VDTLDMVFLDHWKDRYLP-DTLLLEKCGLLRKGTVLLADNVIVPG 175

>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 104 SPDQAQLLAMLVQILG---AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           +  Q  L+A+ ++ +G     R +E+G  TGY++  ++ V+ E G +V+ E   +  E+A
Sbjct: 57  TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA 116
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201
           K+  ER G+ + + +      D    +    E S YD  FV
Sbjct: 117 KRNVERLGIENVIFV----CGDGYYGV---PEFSPYDVIFV 150

>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase With Bound Sam And Dnc Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXX 220
           ++  + AGV  KV +  G + D +  L    +  + D  F+D  K  Y            
Sbjct: 99  QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP-DTLLLEECG 157
Query: 221 XIRVGGIIVIDNVLWHG 237
            +R G +++ DNV+  G
Sbjct: 158 LLRKGTVLLADNVICPG 174

>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And 3,5- Dinitrocatechol Length = 216

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 42  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXX 220
           ++  + AGV  KV +  G + D +  L    +  + D  F+D  K  Y            
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP-DTLLLEECG 160
Query: 221 XIRVGGIIVIDNVLWHG 237
            +R G +++ DNV+  G
Sbjct: 161 LLRKGTVLLADNVICPG 177

>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O- Methyltransferase Bound With S-Adenosylmethionine And Inhibitor Dinitrocatechol Length = 214

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
           M V   + +++  ++Q       +E+G Y GYS++ +A +L     L+  E +     + 
Sbjct: 39  MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEXXXXXXX 220
           ++  + AG+  KV +  G + D +  L    +  + D  F+D  K  Y            
Sbjct: 99  QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLP-DTLLLEECG 157
Query: 221 XIRVGGIIVIDNVLWHG 237
            +R G +++ DNV+  G
Sbjct: 158 LLRKGTVLLADNVICPG 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-105
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	1e-102
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	1e-102
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	1e-102
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	1e-100
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	1e-100
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	1e-100
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	9e-99
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	2e-96
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	1e-91
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	9e-91
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	6e-90
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	9e-89
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	3e-84
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	2e-08
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	4e-07
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	4e-07
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	1e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	5e-06
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	9e-06
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	1e-05
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	5e-05
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	5e-05
2b25_A	336	Hypothetical protein; structural genomics, methyl	6e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	2e-04
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	2e-04
2h00_A	254	Methyltransferase 10 domain containing protein; st	5e-04
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	8e-04

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  304 bits (782), Expect = e-105
 Identities = 98/232 (42%), Positives = 152/232 (65%), Gaps = 6/232 (2%)

Query: 54  SAHDEKYSN--KQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQL 110
           S H   + +  K +    P LY Y+      +   L QLR ETA + G+ MQ+SP+QAQ 
Sbjct: 4   SHHHHHHGSMGKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQF 63

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
           L +L+ + GA++ +E+GV+ GYS+LA+AL LP  G ++AC++D  +  +AKKY+++AGV+
Sbjct: 64  LGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA 123

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230
            K+ ++ G A  +L+ L        +D  F+DA+KR Y  Y+E+ L LL   R GG++VI
Sbjct: 124 EKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLL---RRGGLMVI 180

Query: 231 DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           DNVLWHGKV +    +A+T  ++ FN++L +DERV IS++P+GDGMT+  K+
Sbjct: 181 DNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK 232

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  297 bits (763), Expect = e-102
 Identities = 84/217 (38%), Positives = 134/217 (61%), Gaps = 4/217 (1%)

Query: 66  ISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +S+TP LY Y+L   +RE   L  LR+ET+ M  + MQV+P+QAQ + ML+++  A++ +
Sbjct: 6   LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G +TGYS+LA++L LP+ G ++ C+ +    + A  Y+  A   HK+K++ G A D+L
Sbjct: 66  ELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMV 244
            +L+  G    +DF F+DA+K  Y  Y+EL L+L+      G+I IDN+ W GKV D   
Sbjct: 126 HSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLV---TPKGLIAIDNIFWDGKVIDPND 182

Query: 245 NDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
              +T  I+  N+ +  D RV +S++ I DGM + Q 
Sbjct: 183 TSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQP 219

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  296 bits (761), Expect = e-102
 Identities = 93/233 (39%), Positives = 144/233 (61%), Gaps = 15/233 (6%)

Query: 62  NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +++ IS+T  L +YI RN VREP+   +LR+ET  +  + MQ+SP++ Q L +L +I GA
Sbjct: 2   SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           +R IE+G +TGYSSL  A  LPE G ++ C+       VA+KY++  G+ +K+ +K G A
Sbjct: 62  KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121

Query: 181 ADSLKALILNGEAS-----------SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV 229
            ++L+ LI +  A            S D  F+DA+K  Y  Y+ L+L+LL   + GG+++
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLL---KPGGLLI 178

Query: 230 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
            DNVLW G VAD    +  T+ IR FN+ +  D  V +S+VPI DG+++ +KR
Sbjct: 179 ADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR 231

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  296 bits (759), Expect = e-102
 Identities = 95/224 (42%), Positives = 148/224 (66%), Gaps = 6/224 (2%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAG-MRGSQMQVSPDQAQLLAMLVQIL 118
           S      +TP LY Y+L+  +REP +L +LREET        MQ +P+QAQLLA+LV+++
Sbjct: 5   SINT-TLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLM 63

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
            A++ I++G +TGYS++A+ L LP+ G L+ C+ D +S  +AK+Y+E+AG+S K+ ++  
Sbjct: 64  QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS 123

Query: 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK 238
            A D+L  LI  G+A  YD  ++DA+K     Y+E  L+LL   R GG+I +DNVL  G+
Sbjct: 124 PAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLL---REGGLIAVDNVLRRGQ 180

Query: 239 VADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           VAD+         IR FN+ + +DERV + ++PIGDG+T+ +K+
Sbjct: 181 VADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK 224

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  292 bits (749), Expect = e-100
 Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 13/236 (5%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLL 111
           A  ++  N   +  +  L  YILR     RE   L++LRE       S M  SP   QL+
Sbjct: 4   AVMKQVKNTG-LLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLM 62

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
           + +++++ A++ IEVGV+TGYS L  AL +P+ G + A + D  + E+   +  +AGV H
Sbjct: 63  SFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEH 122

Query: 172 KVKIKHGLAADSLKALILNGEAS-SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230
           K+      A  +L  L+   E+  SYDF FVDA+K  Y +Y E L++L+   +VGGI+  
Sbjct: 123 KINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV---KVGGIVAY 179

Query: 231 DNVLWHGKVAD-----QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
           DN LW G VA               ++   NK L  D R+ I  +P+GDG+T C++
Sbjct: 180 DNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR 235

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  291 bits (748), Expect = e-100
 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 12/228 (5%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILG 119
             + +      + +Y+++  +    +L ++ E           V+ +Q Q LA+LV++  
Sbjct: 4   GKRHMQQQWSAVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQ 63

Query: 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179
           A+R +E+G   GYS++ +A  LP  G L+  E DA   +VA++  + AGV  +V ++ G 
Sbjct: 64  AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP 123

Query: 180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV 239
           A  SL++L   GE  ++D  F+DA+K     Y    L+     R G +I+ DNV+  G+V
Sbjct: 124 ALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYS---RPGTLIIGDNVVRDGEV 177

Query: 240 ADQMVNDAKTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR 282
            +    D +   +R F + +  + R++ + +        DG T+    
Sbjct: 178 VNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAWVN 225

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  291 bits (746), Expect = e-100
 Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 59  KYSNKQVISVTP---PLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
               ++   + P    L+ Y+L   +RE   LR LR  T         ++ +QAQLLA L
Sbjct: 5   WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64

Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
            +++ A++ +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ 
Sbjct: 65  ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124

Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL 234
           ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQLL   R GGI+ +  VL
Sbjct: 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLL---RPGGILAVLRVL 181

Query: 235 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
           W GKV      D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 182 WRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  287 bits (738), Expect = 9e-99
 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 10/223 (4%)

Query: 66  ISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           I     +  Y+    + +   L ++ +  A        VSP Q + L +LVQI GA+  +
Sbjct: 4   IETWTAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNIL 63

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+G   GYS++ +A  L   G +V  E   +  ++A+   ERA ++ +V+++ GLA DSL
Sbjct: 64  EIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL 123

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMV 244
           + +  N +   +DF F+DA+K+    YFE  L+L    R G +I+ DNV+  G+V D   
Sbjct: 124 QQIE-NEKYEPFDFIFIDADKQNNPAYFEWALKLS---RPGTVIIGDNVVREGEVIDNTS 179

Query: 245 NDAKTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR 282
           ND +   IR F + +  + RVS + +        DG  +   +
Sbjct: 180 NDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK 222

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  282 bits (724), Expect = 2e-96
 Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 13/230 (5%)

Query: 62  NKQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQIL 118
             + +  +  LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++
Sbjct: 19  GHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLI 78

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
            A+  +E+GVYTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G
Sbjct: 79  NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138

Query: 179 LAADSLKALILNGEAS-SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG 237
            A   L  +I + +   SYDF FVDA+K  Y  Y + L+ L+   +VGG+I  DN LW+G
Sbjct: 139 PALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV---KVGGVIGYDNTLWNG 195

Query: 238 KVADQMVNDAK------TISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
            V        +         +   NK L  D R+ I M+P+GDG+TIC++
Sbjct: 196 SVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 245

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  269 bits (691), Expect = 1e-91
 Identities = 49/236 (20%), Positives = 102/236 (43%), Gaps = 17/236 (7%)

Query: 53  SSAHDEKYSNKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLL 111
              H      +    +      Y++  +  +   +  LRE           V      L+
Sbjct: 7   HHHHSSGLVPRG-SHMDDLNKKYLIDLHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLI 63

Query: 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 171
             L+++   +  +E+G   GYSS+  A  + +   +   ER+   ++ AK+        +
Sbjct: 64  KQLIRMNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFEN 122

Query: 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID 231
           +V+I  G A +  + +        YD  F+DA K   +++FE+   LL   +  G+++ D
Sbjct: 123 QVRIIEGNALEQFENV----NDKVYDMIFIDAAKAQSKKFFEIYTPLL---KHQGLVITD 175

Query: 232 NVLWHGKVADQMVNDAK-----TISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
           NVL+HG V+D  +  ++        ++++N+ L++    + + + I DG+ I  K 
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG 231

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  267 bits (686), Expect = 9e-91
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 14/220 (6%)

Query: 68  VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126
           +   L  Y+ +      + + Q+  E    +   M       + L  L+++    R +E+
Sbjct: 4   IEERLKHYLEKQIPARDQYIEQMEREAHEQQVPIMD--LLGMESLLHLLKMAAPARILEI 61

Query: 127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186
           G   GYS++ +A  LPE   +V+ ERD R  E A K+ +  G+  ++++  G A    + 
Sbjct: 62  GTAIGYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK 120

Query: 187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD----Q 242
           L L      +D  F+DA K  Y+ +F++   ++   R GG+I+ DNVL+ G VA+     
Sbjct: 121 LELYP---LFDVLFIDAAKGQYRRFFDMYSPMV---RPGGLILSDNVLFRGLVAETDIEH 174

Query: 243 MVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
             +      I  +N+ L+E  +    + P+GDG+ I  KR
Sbjct: 175 KRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  264 bits (678), Expect = 6e-90
 Identities = 40/215 (18%), Positives = 83/215 (38%), Gaps = 13/215 (6%)

Query: 68  VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126
           V   +  Y+         ++  + +           V     +LL +L +I   Q  +  
Sbjct: 6   VDSRIGAYLDGLLPEADPVVAAMEQIARERN--IPIVDRQTGRLLYLLARIKQPQLVVVP 63

Query: 127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186
           G   G +S   A  +  S  +V  + D  ++E A++     G+  +V+++ G        
Sbjct: 64  GDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG 123

Query: 187 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVND 246
                     D  F+D +     +  E + + L       +++  N L  G VA+    D
Sbjct: 124 Q------RDIDILFMDCDVFNGADVLERMNRCL---AKNALLIAVNALRRGSVAES-HED 173

Query: 247 AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
            +T ++R FN +L        ++VP+G+G+ +  +
Sbjct: 174 PETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYR 208

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  262 bits (671), Expect = 9e-89
 Identities = 46/220 (20%), Positives = 79/220 (35%), Gaps = 13/220 (5%)

Query: 67  SVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQIL---GAQRC 123
           +    L  Y+         + + RE+ A              QLL  L       G+   
Sbjct: 3   NAFEYLRTYVESTTETDAAVARAREDAAEF--GLPAPDEMTGQLLTTLAATTNGNGSTGA 60

Query: 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAAD 182
           I +    G   L I   L ++  L   + ++     AK  +  AG    +V+       D
Sbjct: 61  IAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD 120

Query: 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQ 242
            +  L       SY   F        +   +    LL   R GG +V+ + L  G +ADQ
Sbjct: 121 VMSRL----ANDSYQLVFGQVSPMDLKALVDAAWPLL---RRGGALVLADALLDGTIADQ 173

Query: 243 MVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
              D  T + R+ ++ +   E   ++ +P+G G+T+  K 
Sbjct: 174 TRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  250 bits (641), Expect = 3e-84
 Identities = 41/213 (19%), Positives = 87/213 (40%), Gaps = 10/213 (4%)

Query: 72  LYDYILRNV--REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           +  Y+ +N    +P+ + +  +     +   M V   + Q++  +++       +E+G Y
Sbjct: 9   ILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAY 68

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
            GYS++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L  
Sbjct: 69  CGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK 128

Query: 190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKT 249
             +  + D  F+D  K  Y     LL +  L +R G +++ DNV+  G            
Sbjct: 129 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGL-LRKGTVLLADNVIVPGTPDF-------L 180

Query: 250 ISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
             +R  +          +  + + DG+     +
Sbjct: 181 AYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 4e-13
 Identities = 46/296 (15%), Positives = 84/296 (28%), Gaps = 92/296 (31%)

Query: 10  FAFVLLKTEKTVAKF--------HSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYS 61
           F  +L K E+ V KF        + F L   ++      +  +  T         D  Y+
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQ---RQPSMMTRM--YIEQRDRLYN 121

Query: 62  NKQVISVTPPLYDYILRNVREPEI-------LRQLREETA----GMRGSQMQVSPDQAQL 110
           + QV             NV   +        L +LR        G+ GS          +
Sbjct: 122 DNQVF---AK------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW------V 166

Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
              +      Q  ++  ++  + +L              C      LE+ +K        
Sbjct: 167 ALDVCLSYKVQCKMDFKIF--WLNLK------------NCNSPETVLEMLQKLL------ 206

Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY---QEYFELLLQLLLQIRVGGI 227
           +++       +D    + L   +       + AE R     + Y   LL           
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYENCLL----------- 248

Query: 228 IVIDNVLWHGKVADQMVNDAKTI------SIRNFNKNLMEDERVSISMVPIGDGMT 277
            V+ NV  + K  +      K +       + +F   L       IS+      +T
Sbjct: 249 -VLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLT 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 53/212 (25%)

Query: 57  DEKYSNKQVISVTPPLY--DYILRNVREPEILRQL--REETAGMRGSQMQVSPDQAQLLA 112
           + +Y  K ++SV    +  ++  ++V   ++ + +  +EE        + +S D      
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEI-----DHIIMSKDAVSGTL 65

Query: 113 MLVQIL------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 166
            L   L        Q+ +E  +   Y  L   +           E+   S+       +R
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI---------KTEQRQPSMMTRMYIEQR 116

Query: 167 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGG 226
                                 L  +   +    V   +   +     L Q LL++R   
Sbjct: 117 D--------------------RLYNDNQVFAKYNVSRLQPYLK-----LRQALLELRPAK 151

Query: 227 IIVIDNVLWHGK--VADQMVNDAKTISIRNFN 256
            ++ID VL  GK  VA  +    K     +F 
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 7/115 (6%)

Query: 89  LREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV 148
           L +E   M+     V P  +  +AM++ +    R I+ GV +G     +A  +  SG + 
Sbjct: 82  LIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVF 141

Query: 149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203
           A E+     ++A+    + G+  +V IK    ++         +    D  F+D 
Sbjct: 142 AYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-------GFDEKDVDALFLDV 189

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 17/150 (11%)

Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
              R +EVG     ++  +     +       E +    +  + +  R    HKV    G
Sbjct: 60  KGGRVLEVGFGMAIAASKVQEAPIDE--HWIIECNDGVFQRLRDWAPRQT--HKVIPLKG 115

Query: 179 LAADSLKALILNGEASSYDFAFVDA-------EKRMYQEYFELLLQLLLQIRVGGIIVID 231
           L  D    L        +D    D               + +     LL  + GG++   
Sbjct: 116 LWEDVAPTL----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLL--KPGGVLTYC 169

Query: 232 NVLWHGKVADQMVNDAKTISIRNFNKNLME 261
           N+   G++     +D   +        L+E
Sbjct: 170 NLTSWGELMKSKYSDITIMFEETQVPALLE 199

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 7/115 (6%)

Query: 89  LREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV 148
           + +    M+     V P  A L+     I      +E GV +G  +L +A ++   G +V
Sbjct: 63  IVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVV 122

Query: 149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203
           + E      ++A +  + AG   +V IK     + +       E  + D   +D 
Sbjct: 123 SYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-------EEENVDHVILDL 170

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 16/126 (12%)

Query: 57  DEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQ 116
           DE   + +   V+     Y  R +R               R +Q+    D + ++     
Sbjct: 64  DELIVSGKSFIVSDFSPMYFGRVIR---------------RNTQIISEIDASYIIMRC-G 107

Query: 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 176
           +      +EVGV +G  S  I   L   G L   ERD  +L+ A            V+  
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 167

Query: 177 HGLAAD 182
               AD
Sbjct: 168 RSDIAD 173

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 19/133 (14%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 168
             + M V+       ++     G  +  +A ++ E+G +   +   +++    K      
Sbjct: 14  DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71

Query: 169 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQI----RV 224
           +  +V +      +  K +    +A  ++  ++ +         E  +Q L +       
Sbjct: 72  LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVT 131

Query: 225 GGIIVIDNVLWHG 237
           GGII +  V+++G
Sbjct: 132 GGIITV--VIYYG 142

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 28/170 (16%), Positives = 64/170 (37%), Gaps = 22/170 (12%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
             ++ +  +       ++VG  TG  +L +A  +     + A +R+  ++   +   +R 
Sbjct: 23  CLIMCLA-EPGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAISTTEMNLQRH 78

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGI 227
           G+   V +  G A ++L  +         D A V       QE   ++   L   + GG 
Sbjct: 79  GLGDNVTLMEGDAPEALCKI------PDIDIAVVGGSGGELQEILRIIKDKL---KPGGR 129

Query: 228 IVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS-MVPIGDGM 276
           I++  +L      +      + +    F+ N+     ++I+    +  G 
Sbjct: 130 IIVTAIL-----LETKFEAMECLRDLGFDVNIT---ELNIARGRALDRGT 171

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 19/109 (17%)

Query: 70  PPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           P L + IL                   R +Q+ + P  +  +A+ + +   +R +E G  
Sbjct: 58  PTLEEIILLGFE---------------RKTQI-IYPKDSFYIALKLNLNKEKRVLEFGTG 101

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
           +G     ++ V   +G +   E      + A+K  ++  +   VK  + 
Sbjct: 102 SGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV 147

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 30/172 (17%)

Query: 61  SNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +    + + P L DY++   R P++                 + P  A  +     I   
Sbjct: 58  NGALFLVLRPLLVDYVMSMPRGPQV-----------------IYPKDAAQIVHEGDIFPG 100

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHG 178
            R +E G  +G  +L++   +  +G +++ E+ A   E A++             ++   
Sbjct: 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 160

Query: 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230
             AD            S D A +D         +E+L  +   +  GG++++
Sbjct: 161 DLAD------SELPDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGGVLMV 201

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 42.7 bits (100), Expect = 5e-05
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +     P  A  +  L+ +    R +E G  +G  +L +A  + E G + + E     
Sbjct: 75  RSATP-TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHH 133

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203
           L  A++          V+   G   ++        E ++YD   +D 
Sbjct: 134 LAQAERNVRAFWQVENVRFHLGKLEEA------ELEEAAYDGVALDL 174

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 2/135 (1%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           RG+ +   P    ++  ++ I      +E G  +G  SL ++  +   G +++ E     
Sbjct: 84  RGTAI-TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDH 142

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAAD-SLKALILNGEASSYDFAFVDAEKRMYQEYFELL 215
            ++AKK Y+    S K+        +       ++G          DA           L
Sbjct: 143 HDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTL 202

Query: 216 LQLLLQIRVGGIIVI 230
                 ++ GG+  +
Sbjct: 203 PVFYPHLKHGGVCAV 217

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 12/127 (9%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  ++ L      +   ++G  +G  ++      P+    V  E      E         
Sbjct: 15  ALAISAL-APKPHETLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRERILSNAINL 72

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGI 227
           GVS         A  +   +       + D  F+            +      ++ VGG 
Sbjct: 73  GVSD-RIAVQQGAPRAFDDV-----PDNPDVIFIG----GGLTAPGVFAAAWKRLPVGGR 122

Query: 228 IVIDNVL 234
           +V + V 
Sbjct: 123 LVANAVT 129

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 12/123 (9%)

Query: 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167
           A  L+ L ++       ++G  +   S+  A  L  +G + A ER+ + L   +   ++ 
Sbjct: 30  AVTLSKL-RLQDDLVMWDIGAGSASVSIE-ASNLMPNGRIFALERNPQYLGFIRDNLKKF 87

Query: 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGI 227
              + V +    A + L  L         D  F+     M +E  + + + L   +  G+
Sbjct: 88  VARN-VTLVEAFAPEGLDDL------PDPDRVFIGGSGGMLEEIIDAVDRRL---KSEGV 137

Query: 228 IVI 230
           IV+
Sbjct: 138 IVL 140

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 122 RCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
           R I++G  TG S +   L    +G   +A E D      AKK  E+  +S  +K+     
Sbjct: 68  RGIDIG--TGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ 125

Query: 181 ADSLKALILNGEASSYDFAFVD 202
              L   +       YDF   +
Sbjct: 126 KTLLMDALKEESEIIYDFCMCN 147

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Length = 236

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERD 153
           RG +M   PD   +   ++  L  +  +E+GVY G S      +         ++  +RD
Sbjct: 59  RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRD 118

Query: 154 ARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE 213
               ++     E       + +  G  +D      L   A  +   F+D          +
Sbjct: 119 LSRCQIPASDMEN------ITLHQGDCSDLTTFEHLREMA--HPLIFIDNAHANTFNIMK 170

Query: 214 LLLQLLLQIRVGGIIVID 231
             +  LL    G   +I+
Sbjct: 171 WAVDHLL--EEGDYFIIE 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	100.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.98
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.98
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.97
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.96
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.95
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.79
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.73
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.7
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.7
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.7
2o07_A	304	Spermidine synthase; structural genomics, structur	99.69
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.69
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.68
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.68
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.68
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.68
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.66
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.66
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.65
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.65
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.64
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.64
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.64
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.64
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.63
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.62
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.62
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.61
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.61
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.61
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.61
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.61
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.6
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.6
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.6
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.59
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.59
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.59
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.58
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.58
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.57
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.57
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.57
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.57
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.57
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.56
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.56
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.56
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.56
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.56
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.56
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.56
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.55
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.55
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.55
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.55
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.55
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.54
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.54
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.54
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.53
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.53
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.53
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.53
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.53
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.53
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.53
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.53
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.52
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.52
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.52
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.52
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.52
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.52
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.52
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.52
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.52
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.52
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.52
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.52
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.52
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.51
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.51
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.51
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.51
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.51
3ocj_A	305	Putative exported protein; structural genomics, PS	99.51
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.5
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.5
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.5
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.5
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.5
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.5
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.5
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.5
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.49
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.49
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.49
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.48
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.48
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.48
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.48
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.48
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.48
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.48
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.48
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.48
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.48
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.48
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.48
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.48
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.48
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.47
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.47
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.47
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.47
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.47
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.47
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.47
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.46
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.46
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.46
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.46
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.46
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.46
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.45
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.45
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.45
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.45
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.45
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.44
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.44
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.44
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.44
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.44
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.44
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.44
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.44
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.44
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.44
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.44
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.44
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.43
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.43
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.42
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.42
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.42
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.42
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.42
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.41
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.41
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.41
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.41
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.41
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.4
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.4
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.4
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.4
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.4
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.4
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.4
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.39
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.39
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.39
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.39
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.39
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.39
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.39
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.38
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.38
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.38
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.37
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.37
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.37
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.37
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.37
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.37
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.37
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.37
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.36
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.36
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.36
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.36
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.35
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.35
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.35
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.35
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.34
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.34
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.34
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.34
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.34
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.33
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.33
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.33
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.32
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.32
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.31
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.31
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.31
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.31
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.31
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.31
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.31
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.3
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.3
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.3
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.3
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.29
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.28
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.27
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.27
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.25
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.25
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.24
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.24
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.23
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.23
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.23
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.22
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.22
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.2
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.19
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.18
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.18
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.17
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.17
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.16
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.16
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.16
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.16
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.15
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.14
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.14
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.13
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.12
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.12
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.11
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.09
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.09
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.08
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.07
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.07
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.06
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.04
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.04
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.04
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.01
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.0
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.99
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.95
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.95
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.93
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.93
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.91
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.9
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.89
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.89
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.88
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.87
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.87
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.87
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.84
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.83
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.8
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.79
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.77
3khk_A	544	Type I restriction-modification system methylation	98.73
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.66
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.65
3lkd_A	542	Type I restriction-modification system methyltrans	98.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.62
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.57
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.55
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.35
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.33
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.33
3ufb_A	530	Type I restriction-modification system methyltran	97.99
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.97
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.88
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.84
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.81
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.74
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.63
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.62
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.61
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.58
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.5
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.47
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.42
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.08
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.98
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.89
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.88
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.79
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.79
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.78
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.74
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.67
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.65
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.65
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.64
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.53
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.46
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.35
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.26
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.22
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.2
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.19
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.16
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.15
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.08
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.08
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.07
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.07
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.05
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.04
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.04
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.03
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.02
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.01
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.98
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.97
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.9
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	95.87
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.86
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.86
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.82
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.79
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.68
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	95.66
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.58
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.56
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.55
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.51
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.49
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.44
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.42
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.4
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.4
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.35
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.26
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.21
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.13
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.12
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.12
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.12
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.09
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.08
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.06
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.99
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.87
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.86
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.75
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.72
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.65
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	94.58
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.55
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.49
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.33
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.31
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.13
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.92
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.8
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.63
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	93.48
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.47
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.45
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.11
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.11
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	92.9
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	92.55
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.51
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	92.34
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.27
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.21
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	91.88
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.8
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	91.74
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	91.67
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	91.61
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.48
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	91.12
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.98
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.83
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	90.61
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.51
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	90.44
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.31
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.11
1id1_A	153	Putative potassium channel protein; RCK domain, E.	89.98
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.54
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	89.45
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	89.19
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.17
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	89.13
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	88.78
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	88.67
1lnq_A	336	MTHK channels, potassium channel related protein;	88.66
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.33
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.18
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	88.01
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	87.74
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	87.51
4ezb_A	317	Uncharacterized conserved protein; structural geno	87.44
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	87.44
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	87.37
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.3
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	87.19
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	86.73
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	86.67
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	86.17
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	85.89
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	85.81
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	85.74
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	85.71
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	85.51
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	85.16
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	84.72
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	84.37
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	84.34
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	84.29
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	84.26
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	84.14
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	84.06
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	84.0
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	83.92
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	83.91
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.89
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	83.79
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	83.57
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	83.49
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	83.46
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	83.35
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.18
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	83.15
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	83.1
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	82.6
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	82.58
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	82.58
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	82.57
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	82.47
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	82.36
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.35
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	82.31
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	82.16
4g65_A	461	TRK system potassium uptake protein TRKA; structur	82.09
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.89
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	81.8
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	81.46
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	81.27
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	81.15
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	81.12
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	80.8
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	80.7
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	80.67
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	80.34
4g65_A	461	TRK system potassium uptake protein TRKA; structur	80.32

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=2.2e-36  Score=261.59  Aligned_cols=216  Identities=39%  Similarity=0.706  Sum_probs=196.5

Q ss_pred             ccCCCChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC
Q 023411           64 QVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (282)
Q Consensus        64 ~~~~~~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~  142 (282)
                      ..+.+++.+.+|+.++. .+++.+.++++++...+.+.+.+.+..+.++..++...++++|||||||+|++++++++.++
T Consensus         4 ~~~~~~~~~~~Y~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~   83 (242)
T 3r3h_A            4 KHLSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALP   83 (242)
T ss_dssp             CCCCCCHHHHHHHHHHHCCCCHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSC
T ss_pred             CcccCCHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCC
Confidence            44567899999999975 56789999999887776667889999999999999999999999999999999999999987


Q ss_pred             CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCC
Q 023411          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQI  222 (282)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~L  222 (282)
                      ++++|+++|+++++++.|+++++.+|+.++++++++|+.+.++.+...++.++||+||+|++...+..+++.+.++   |
T Consensus        84 ~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~---L  160 (242)
T 3r3h_A           84 DDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKL---V  160 (242)
T ss_dssp             TTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGGGHHHHHHHHHHH---E
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChHHhHHHHHHHHHh---c
Confidence            6899999999999999999999999998899999999998877654322237899999999998899999999999   9


Q ss_pred             CCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          223 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       223 kpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      +|||+|+++|++|+|.+.++...+..+.++++|++.+.++++++++++|++||+.+|+|+
T Consensus       161 kpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  220 (242)
T 3r3h_A          161 TPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI  220 (242)
T ss_dssp             EEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSSCEEEEEEC
T ss_pred             CCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccCceEEEEEc
Confidence            999999999999999999988888889999999999999999999999999999999986

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=2.6e-35  Score=251.50  Aligned_cols=204  Identities=22%  Similarity=0.323  Sum_probs=186.8

Q ss_pred             ChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCC---EEEEEcccccHHHHHHHHHCCCCC
Q 023411           69 TPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQ---RCIEVGVYTGYSSLAIALVLPESG  145 (282)
Q Consensus        69 ~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~---~VLEIG~G~G~~t~~la~~~~~~~  145 (282)
                      .+.+.+|+.+..++++.+.++++++.+..  .+.+.+..+.++..++...+++   +|||||||+|++++++++.+++++
T Consensus         5 ~~~~~~y~~~~~~~~~~l~~~~~~a~~~~--~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   82 (221)
T 3dr5_A            5 FEYLRTYVESTTETDAAVARAREDAAEFG--LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNT   82 (221)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTS
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCC
Confidence            35678999998888999999999987764  4567999999999999988888   999999999999999999987789


Q ss_pred             EEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCC
Q 023411          146 CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRV  224 (282)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkp  224 (282)
                      +|+++|+++++++.|+++++.+|+. ++++++++|+.+.++.+.    .++||+||+|++..++..+++.+.++   |+|
T Consensus        83 ~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~----~~~fD~V~~d~~~~~~~~~l~~~~~~---Lkp  155 (221)
T 3dr5_A           83 TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA----NDSYQLVFGQVSPMDLKALVDAAWPL---LRR  155 (221)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC----TTCEEEEEECCCTTTHHHHHHHHHHH---EEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc----CCCcCeEEEcCcHHHHHHHHHHHHHH---cCC
Confidence            9999999999999999999999998 789999999988765432    47899999999999999999999999   999


Q ss_pred             CcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 023411          225 GGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  281 (282)
Q Consensus       225 gG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k  281 (282)
                      ||+++++|++|.|.+.++...+..+.++++|++.+.++++++++++|+|||+++++|
T Consensus       156 GG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~~  212 (221)
T 3dr5_A          156 GGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTK  212 (221)
T ss_dssp             EEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEEEEE
T ss_pred             CcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHHHHH
Confidence            999999999999999998888888889999999999999999999999999999998

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=6.6e-34  Score=245.15  Aligned_cols=216  Identities=37%  Similarity=0.640  Sum_probs=191.7

Q ss_pred             ccCCCChhHHHHHHhcc---CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHH
Q 023411           64 QVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV  140 (282)
Q Consensus        64 ~~~~~~~~l~~y~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~  140 (282)
                      +.+..++.+++|+.++.   ++++.+.++++++.+++.+.+.+.+..+.++..++...++++|||||||+|++++++++.
T Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~   91 (237)
T 3c3y_A           12 TGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALS   91 (237)
T ss_dssp             -CCBSCHHHHHHHHHHHTGGGSCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred             cccCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHh
Confidence            45678899999999863   578899999999988776678899999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC-CCCceeEEEEcCCccccHHHHHHHHHhh
Q 023411          141 LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLL  219 (282)
Q Consensus       141 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~-~~~~fDlV~id~~~~~~~~~l~~~~~~~  219 (282)
                      ++++++|+++|+++++++.|+++++.+|+.++++++++|+.+.++.+..++ ..++||+||+|+++..+..+++.+.++ 
T Consensus        92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~-  170 (237)
T 3c3y_A           92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKL-  170 (237)
T ss_dssp             SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHH-
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHh-
Confidence            987799999999999999999999999998889999999998877664432 137899999999999999999999999 


Q ss_pred             cCCCCCcEEEEeCCCCCCcccCCcCCCh-----hhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          220 LQIRVGGIIVIDNVLWHGKVADQMVNDA-----KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       220 ~~LkpgG~lv~dd~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                        |+|||+|+++|++|+|.+.++.....     ....+++|++.+.++++++++++|++||+++++|+
T Consensus       171 --L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  236 (237)
T 3c3y_A          171 --VKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRL  236 (237)
T ss_dssp             --EEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             --cCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence              99999999999999999887643221     24688899999999999999999999999999986

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=6.5e-34  Score=246.76  Aligned_cols=217  Identities=39%  Similarity=0.664  Sum_probs=192.0

Q ss_pred             cccCCCChhHHHHHHhcc---CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHH
Q 023411           63 KQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIAL  139 (282)
Q Consensus        63 ~~~~~~~~~l~~y~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~  139 (282)
                      .+.+..++.+++|+.++.   ++++.+.++++++.+++.+.|.+.+..+.++..++...++++|||||||+|++++++++
T Consensus        20 ~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~   99 (247)
T 1sui_A           20 HKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATAL   99 (247)
T ss_dssp             -CCSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHH
T ss_pred             cccCCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHH
Confidence            355678899999999862   67889999999998877667899999999999999999999999999999999999999


Q ss_pred             HCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC-CCCceeEEEEcCCccccHHHHHHHHHh
Q 023411          140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQL  218 (282)
Q Consensus       140 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~-~~~~fDlV~id~~~~~~~~~l~~~~~~  218 (282)
                      .++++++|+++|+++++++.|+++++..|+.++++++++|+.+.++.+...+ ..++||+||+|+....+..+++.+.++
T Consensus       100 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~  179 (247)
T 1sui_A          100 AIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL  179 (247)
T ss_dssp             HSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHH
T ss_pred             hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHh
Confidence            9886799999999999999999999999998889999999998777653221 137899999999988899999999999


Q ss_pred             hcCCCCCcEEEEeCCCCCCcccCCcCCCh------hhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          219 LLQIRVGGIIVIDNVLWHGKVADQMVNDA------KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       219 ~~~LkpgG~lv~dd~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                         |+|||+|+++|++|+|.+.++...+.      ...++++|++.+.++++++++++|++||+++++|+
T Consensus       180 ---LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~l~~k~  246 (247)
T 1sui_A          180 ---VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI  246 (247)
T ss_dssp             ---BCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECSTTCEEEECBC
T ss_pred             ---CCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecCCccEEEEEc
Confidence               99999999999999999988754332      24589999999999999999999999999999985

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=4e-33  Score=237.35  Aligned_cols=218  Identities=42%  Similarity=0.764  Sum_probs=195.8

Q ss_pred             ccccCCCChhHHHHHHhccC-ChHHHHHHHHHHH-ccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHH
Q 023411           62 NKQVISVTPPLYDYILRNVR-EPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIAL  139 (282)
Q Consensus        62 ~~~~~~~~~~l~~y~~~~~~-~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~  139 (282)
                      ..+.+.+++.+.+|+.++.. +++.+.++++.+. ..+.+.+.+.+..+.++..++...++.+|||||||+|.++.++++
T Consensus         5 ~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~   84 (225)
T 3tr6_A            5 SINTTLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGL   84 (225)
T ss_dssp             CCCSCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHH
Confidence            33556788999999999754 5788889988887 777667889999999999999999999999999999999999999


Q ss_pred             HCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhh
Q 023411          140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLL  219 (282)
Q Consensus       140 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~  219 (282)
                      .++++++|+++|+++++++.++++++..++.++++++++|+.+.++.+...+..++||+||++++...+..+++.+.++ 
T Consensus        85 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~-  163 (225)
T 3tr6_A           85 ALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKL-  163 (225)
T ss_dssp             TCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGGGHHHHHHHHHHH-
T ss_pred             hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHHHHHHHHHHHHHh-
Confidence            8876789999999999999999999999998889999999988777664322227999999999988899999999999 


Q ss_pred             cCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          220 LQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       220 ~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                        |+|||+++++|++|+|.+.++...+..+.++++|++.+.++++++++++|++||+.+++|+
T Consensus       164 --L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          164 --LREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             --EEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             --cCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence              9999999999999999999888888888899999999999999999999999999999996

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=2.6e-33  Score=240.60  Aligned_cols=224  Identities=43%  Similarity=0.798  Sum_probs=195.5

Q ss_pred             ccccccccccCCCChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHH
Q 023411           56 HDEKYSNKQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSS  134 (282)
Q Consensus        56 ~~~~~~~~~~~~~~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t  134 (282)
                      |--.++.++...+++.+.+|+.+.. .+++.+.++++.+.+...+.|.+.+..+.++..++...++++|||||||+|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~   87 (232)
T 3cbg_A            8 HHHGSMGKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSA   87 (232)
T ss_dssp             -------CCBTTSCHHHHHHHHHTSCCCCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHH
T ss_pred             ccccccccccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHH
Confidence            3344677777789999999999975 568899999998877666567899999999999999889999999999999999


Q ss_pred             HHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHH
Q 023411          135 LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEL  214 (282)
Q Consensus       135 ~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~  214 (282)
                      .++++.++++++|+++|+++++++.|+++++.+++.++++++++|+.+.++.+......++||+||+|++...+..+++.
T Consensus        88 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~~~~~~~l~~  167 (232)
T 3cbg_A           88 LAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEI  167 (232)
T ss_dssp             HHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCGGGHHHHHHH
T ss_pred             HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCHHHHHHHHHH
Confidence            99999887678999999999999999999999999888999999998877765422111789999999998889999999


Q ss_pred             HHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          215 LLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       215 ~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      +.++   |+|||+|+++|++|+|.+.++...+..+.++++|++.+.+++++.++++|++||+++++|+
T Consensus       168 ~~~~---LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          168 GLNL---LRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             HHHT---EEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHHH---cCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            9998   9999999999999999999887777888999999999999999999999999999999996

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=100.00  E-value=9.6e-32  Score=229.38  Aligned_cols=213  Identities=38%  Similarity=0.644  Sum_probs=191.3

Q ss_pred             CCChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCC
Q 023411           67 SVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG  145 (282)
Q Consensus        67 ~~~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~  145 (282)
                      ...+.+.+|+.++. .+++.+.++++.+...+.+.+.+.+..+.++..++...++++|||||||+|+++.++++.+++++
T Consensus        16 ~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   95 (229)
T 2avd_A           16 PEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADG   95 (229)
T ss_dssp             CTTSHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             hhHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCC
Confidence            35678899999884 56889999999998876677899999999999999999999999999999999999999887678


Q ss_pred             EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC
Q 023411          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG  225 (282)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg  225 (282)
                      +|+++|+++++++.++++++.+++.++++++++|+.+.++.+...+..++||+||+|.....+..+++.+.++   |+||
T Consensus        96 ~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~---L~pg  172 (229)
T 2avd_A           96 RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQL---LRPG  172 (229)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHH---EEEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHHHHHHHHHHHHHH---cCCC
Confidence            9999999999999999999999998889999999988776654321126899999999988888999999999   9999


Q ss_pred             cEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          226 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       226 G~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      |+++++|++|+|.+.++...+....++++|++.+.++++++++++|++||+++++|+
T Consensus       173 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          173 GILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             EEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             eEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCCceEEEEEC
Confidence            999999999999998887777888999999999999999999999999999999985

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=1.2e-31  Score=228.08  Aligned_cols=209  Identities=31%  Similarity=0.506  Sum_probs=189.3

Q ss_pred             hhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEE
Q 023411           70 PPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLV  148 (282)
Q Consensus        70 ~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~  148 (282)
                      +.+.+|+.++. .+++.+.++++.+.....+.+.+++..+.++..++...++.+|||||||+|+++.++++.++++++|+
T Consensus         8 ~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~   87 (223)
T 3duw_A            8 TAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVV   87 (223)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEE
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEE
Confidence            46778999875 46788999999888777777888999999999999999999999999999999999999987678999


Q ss_pred             EEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEE
Q 023411          149 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGII  228 (282)
Q Consensus       149 ~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~l  228 (282)
                      ++|+++++++.+++++...++.++++++++|+.+.++.+...+ .++||+||+|+....+..+++.+.++   |+|||++
T Consensus        88 ~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~fD~v~~d~~~~~~~~~l~~~~~~---L~pgG~l  163 (223)
T 3duw_A           88 TLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEK-YEPFDFIFIDADKQNNPAYFEWALKL---SRPGTVI  163 (223)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CCCCSEEEECSCGGGHHHHHHHHHHT---CCTTCEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC-CCCcCEEEEcCCcHHHHHHHHHHHHh---cCCCcEE
Confidence            9999999999999999999998889999999988777664332 26799999999988889999999998   9999999


Q ss_pred             EEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeec-----CCceEEEEEC
Q 023411          229 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR  282 (282)
Q Consensus       229 v~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-----~~Gl~~~~k~  282 (282)
                      +++|++|+|.+.++...+.....+++|++.+.++++++++++|+     +||+.+|++|
T Consensus       164 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~  222 (223)
T 3duw_A          164 IGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK  222 (223)
T ss_dssp             EEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             EEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCeeEEEEEe
Confidence            99999999999988877888899999999999999999999999     9999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=6.1e-31  Score=228.02  Aligned_cols=208  Identities=29%  Similarity=0.499  Sum_probs=185.5

Q ss_pred             ChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEE
Q 023411           69 TPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCL  147 (282)
Q Consensus        69 ~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v  147 (282)
                      .+.+.+|+.+.. .+.+.+.++++.+.+...+.+.+++..+.++..++...++.+|||||||+|+++.++++.++++++|
T Consensus        12 ~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v   91 (248)
T 3tfw_A           12 WSAVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQL   91 (248)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEE
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEE
Confidence            345778988764 4578889998888777666678899999999999999999999999999999999999998767899


Q ss_pred             EEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcE
Q 023411          148 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGI  227 (282)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~  227 (282)
                      +++|+++++++.|+++++..++.++++++++|+.+.++.+.   +.++||+||+|+....+..+++.+.++   |+|||+
T Consensus        92 ~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~---~~~~fD~V~~d~~~~~~~~~l~~~~~~---LkpGG~  165 (248)
T 3tfw_A           92 LTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG---ECPAFDLIFIDADKPNNPHYLRWALRY---SRPGTL  165 (248)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC---SCCCCSEEEECSCGGGHHHHHHHHHHT---CCTTCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC---CCCCeEEEEECCchHHHHHHHHHHHHh---cCCCeE
Confidence            99999999999999999999998889999999988766441   124899999999988899999999998   999999


Q ss_pred             EEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEe-ecC----CceEEEEEC
Q 023411          228 IVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMV-PIG----DGMTICQKR  282 (282)
Q Consensus       228 lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-p~~----~Gl~~~~k~  282 (282)
                      |+++|++|.|.+.++...+..+.++++|++.+.++++++++++ |++    ||+.+|+||
T Consensus       166 lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~  225 (248)
T 3tfw_A          166 IIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAWVN  225 (248)
T ss_dssp             EEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEEEEEEEEC
T ss_pred             EEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCeeEEEEEe
Confidence            9999999999999988888888999999999999999999988 666    999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.98  E-value=2e-31  Score=228.68  Aligned_cols=208  Identities=23%  Similarity=0.367  Sum_probs=179.0

Q ss_pred             ccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC
Q 023411           64 QVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP  142 (282)
Q Consensus        64 ~~~~~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~  142 (282)
                      ....+++.+.+|+.+... +++.+.++++......  .+.+.+..+.++..++...++.+|||||||+|+++.+++...+
T Consensus        17 ~~~~~~~~l~~yl~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~   94 (232)
T 3ntv_A           17 RGSHMDDLNKKYLIDLHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD   94 (232)
T ss_dssp             ----CHHHHHHHHHHHHGGGCCGGGGHHHHHHHTT--CCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT
T ss_pred             CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC
Confidence            345678899999998754 3556667777665543  3567899999999999999999999999999999999999665


Q ss_pred             CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH-HHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcC
Q 023411          143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK-ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQ  221 (282)
Q Consensus       143 ~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~-~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~  221 (282)
                       +++|+++|+++++++.|+++++..++.++++++++|+.+.++ .+     .++||+||++.....+..+++.+.++   
T Consensus        95 -~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~fD~V~~~~~~~~~~~~l~~~~~~---  165 (232)
T 3ntv_A           95 -DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-----DKVYDMIFIDAAKAQSKKFFEIYTPL---  165 (232)
T ss_dssp             -TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-----TSCEEEEEEETTSSSHHHHHHHHGGG---
T ss_pred             -CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-----cCCccEEEEcCcHHHHHHHHHHHHHh---
Confidence             789999999999999999999999998889999999988777 55     58999999999999999999999998   


Q ss_pred             CCCCcEEEEeCCCCCCcccCCcC-CC----hhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          222 IRVGGIIVIDNVLWHGKVADQMV-ND----AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       222 LkpgG~lv~dd~~~~g~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      |+|||+|+++|++|.|.+.++.. ..    ....++++|++.+.++++++++++|++||+.+++|+
T Consensus       166 LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          166 LKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             EEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred             cCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEcCCceEEEEEC
Confidence            99999999999999999887654 22    224589999999999999999999999999999996

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.98  E-value=3.9e-30  Score=221.40  Aligned_cols=215  Identities=42%  Similarity=0.753  Sum_probs=189.5

Q ss_pred             cCCCChhHHHHHHhcc-CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC
Q 023411           65 VISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE  143 (282)
Q Consensus        65 ~~~~~~~l~~y~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~  143 (282)
                      .....+.+.+|+.... .+++.+.++++.+.....+.+.+.+..+.++..++...++.+|||||||+|+++..+++.+++
T Consensus         5 ~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~   84 (239)
T 2hnk_A            5 NISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPE   84 (239)
T ss_dssp             SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCT
T ss_pred             cccchHHHHHHHHHccCCCCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCC
Confidence            3567889999999975 568899999999988777778999999999999999999999999999999999999999876


Q ss_pred             CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC---------CCC--CceeEEEEcCCccccHHHH
Q 023411          144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN---------GEA--SSYDFAFVDAEKRMYQEYF  212 (282)
Q Consensus       144 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~---------~~~--~~fDlV~id~~~~~~~~~l  212 (282)
                      +++|+++|+++++++.|+++++..++.++++++++|+.+.++.+...         ...  ++||+||++.....+..++
T Consensus        85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l  164 (239)
T 2hnk_A           85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYY  164 (239)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHH
Confidence            78999999999999999999999998888999999998866654321         011  6899999999988888999


Q ss_pred             HHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          213 ELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       213 ~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      +.+.++   |+|||++++++++|+|.+.++.........++.|++.+..++.+.+.++|+++|+.+++|+
T Consensus       165 ~~~~~~---L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          165 PLILKL---LKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             HHHHHH---EEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHH---cCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence            999999   9999999999999999998887777778899999999999999999999999999999985

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.97  E-value=1.3e-29  Score=213.72  Aligned_cols=203  Identities=19%  Similarity=0.276  Sum_probs=171.1

Q ss_pred             CChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCE
Q 023411           68 VTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (282)
Q Consensus        68 ~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~  146 (282)
                      ..+.+++|+.++.. +++.+.++++.+.+..  .+.+.+..+.++..++...++.+|||||||+|+++.++++.++++++
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~   83 (210)
T 3c3p_A            6 VDSRIGAYLDGLLPEADPVVAAMEQIARERN--IPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSR   83 (210)
T ss_dssp             BCHHHHHHHHHTSCSCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCE
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCE
Confidence            56788999998764 5778888888887653  45789999999999988888999999999999999999998876789


Q ss_pred             EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCc
Q 023411          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG  226 (282)
                      |+++|+++++++.|+++++..++.++++++++|+.+.++..     .+ ||+||+|.....+..+++.+.++   |+|||
T Consensus        84 v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~-fD~v~~~~~~~~~~~~l~~~~~~---LkpgG  154 (210)
T 3c3p_A           84 VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-----RD-IDILFMDCDVFNGADVLERMNRC---LAKNA  154 (210)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-----CS-EEEEEEETTTSCHHHHHHHHGGG---EEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-----CC-CCEEEEcCChhhhHHHHHHHHHh---cCCCe
Confidence            99999999999999999999998888999999998765543     35 99999999888888999999988   99999


Q ss_pred             EEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          227 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       227 ~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      +++++|++|.|.+.++ ........+++|++.+.+++++.+.++|+++|+.+++|+
T Consensus       155 ~lv~~~~~~~g~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          155 LLIAVNALRRGSVAES-HEDPETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             EEEEESSSSCC-------------CCCHHHHHHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             EEEEECccccCcccCc-ccchHHHHHHHHHHHHhhCCCeEEEEEecCCceEEEEeC
Confidence            9999999999987754 444556678999999999999999999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.96  E-value=1.7e-27  Score=202.56  Aligned_cols=198  Identities=20%  Similarity=0.327  Sum_probs=167.2

Q ss_pred             ChhHHHHHHhccCC---hHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCC
Q 023411           69 TPPLYDYILRNVRE---PEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG  145 (282)
Q Consensus        69 ~~~l~~y~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~  145 (282)
                      ...+++|+.++...   ..+++.+.+...... ..+.+++..+.++..++...++.+|||||||+|.+++++++.+++++
T Consensus         6 ~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   84 (221)
T 3u81_A            6 EQRILRYVQQNAKPGDPQSVLEAIDTYCTQKE-WAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGA   84 (221)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHT-CGGGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcC-cCcccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCC
Confidence            35788999987542   356777777776553 45789999999999999999999999999999999999999887679


Q ss_pred             EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC
Q 023411          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG  225 (282)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg  225 (282)
                      +|+++|+++++++.|+++++.+++.++++++++|+.+.++.+....+.++||+||+|+....+...++.+..+ ++|+||
T Consensus        85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg  163 (221)
T 3u81_A           85 RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKG  163 (221)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTT
T ss_pred             EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCC
Confidence            9999999999999999999999998889999999987666542211126899999999988887766666543 559999


Q ss_pred             cEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEee-------cCCceEEEEEC
Q 023411          226 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP-------IGDGMTICQKR  282 (282)
Q Consensus       226 G~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-------~~~Gl~~~~k~  282 (282)
                      |+++++|+.++|.              ++|++.+.+++++++..+|       ++||+.+++++
T Consensus       164 G~lv~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          164 TVLLADNVIVPGT--------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             CEEEESCCCCCCC--------------HHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             eEEEEeCCCCcch--------------HHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            9999999998875              6788999999999999999       79999999975

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.95  E-value=6.1e-27  Score=200.42  Aligned_cols=206  Identities=28%  Similarity=0.492  Sum_probs=163.7

Q ss_pred             CChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCE
Q 023411           68 VTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (282)
Q Consensus        68 ~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~  146 (282)
                      .++.+++|+.++.. +++.+.++.+.....  ..+.+.+....++..++...++.+|||||||+|.++..+++.++ +++
T Consensus         4 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~   80 (233)
T 2gpy_A            4 IEERLKHYLEKQIPARDQYIEQMEREAHEQ--QVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EAT   80 (233)
T ss_dssp             -CHHHHHHHHTTCCCCCHHHHHHHHHHHHT--TCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCE
T ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHHHc--CCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCE
Confidence            56788999999865 578888888887654  34568999999999999999999999999999999999999987 789


Q ss_pred             EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCc
Q 023411          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG  226 (282)
                      |+++|+++++++.|+++++..++.++++++++|+.+.++....   .++||+||++.....+..+++.+.++   |+|||
T Consensus        81 v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~fD~I~~~~~~~~~~~~l~~~~~~---L~pgG  154 (233)
T 2gpy_A           81 IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL---YPLFDVLFIDAAKGQYRRFFDMYSPM---VRPGG  154 (233)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT---SCCEEEEEEEGGGSCHHHHHHHHGGG---EEEEE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc---CCCccEEEECCCHHHHHHHHHHHHHH---cCCCe
Confidence            9999999999999999999999888899999999886555421   36899999999888888889999888   99999


Q ss_pred             EEEEeCCCCCCcccCCcC----CChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 023411          227 IIVIDNVLWHGKVADQMV----NDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  282 (282)
Q Consensus       227 ~lv~dd~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k~  282 (282)
                      +++++|++|.|.+.++..    .......+++|++.+.+++.+.+.++|+++|+.+++|+
T Consensus       155 ~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~dG~~~~~~~  214 (233)
T 2gpy_A          155 LILSDNVLFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR  214 (233)
T ss_dssp             EEEEETTTC-------------------------CTTTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             EEEEEcCCcCCccCCccccccchhHHHHHHHHHHHHHHhCCCeEEEEEEcCCeEEEEEEc
Confidence            999999999998765431    11223568889899999999999999999999999985

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.79  E-value=1.2e-18  Score=145.33  Aligned_cols=153  Identities=16%  Similarity=0.114  Sum_probs=118.0

Q ss_pred             CCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--CCcEE
Q 023411           97 RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVK  174 (282)
Q Consensus        97 ~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~  174 (282)
                      +.+.+.+.+.++++|..  ...++++||||||  |++|+++++. + +++|++||.++++.+.|+++++.+|+  .++++
T Consensus        10 ~~P~~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~   83 (202)
T 3cvo_A           10 MRPELTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVN   83 (202)
T ss_dssp             CCCCCCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEE
T ss_pred             CCCCccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceE
Confidence            34567899999999988  4457889999998  6899999984 4 69999999999999999999999998  88999


Q ss_pred             EEEcchhhH--------------HHHHH----hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          175 IKHGLAADS--------------LKALI----LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       175 ~~~gd~~~~--------------l~~l~----~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      ++.+|+.+.              ++.+.    .....++||+||+|+.+..  .++..+.++   |+|||+|++||+.+.
T Consensus        84 ~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~--~~~~~~l~~---l~~GG~Iv~DNv~~r  158 (202)
T 3cvo_A           84 IVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRV--GCALATAFS---ITRPVTLLFDDYSQR  158 (202)
T ss_dssp             EEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHH--HHHHHHHHH---CSSCEEEEETTGGGC
T ss_pred             EEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCch--hHHHHHHHh---cCCCeEEEEeCCcCC
Confidence            999996543              22221    1111378999999998663  566677788   999999999998766


Q ss_pred             CcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEe
Q 023411          237 GKVADQMVNDAKTISIRNFNKNLMEDERVSISMV  270 (282)
Q Consensus       237 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (282)
                      +.-          ..+.+|++.+...++.-...+
T Consensus       159 ~~y----------~~v~~~~~~~~~~~~~a~f~~  182 (202)
T 3cvo_A          159 RWQ----------HQVEEFLGAPLMIGRLAAFQV  182 (202)
T ss_dssp             SSG----------GGGHHHHCCCEEETTEEEEEE
T ss_pred             cch----------HHHHHHHhHHhhcCceEEEEe
Confidence            542          225677776666666554433

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.73  E-value=1.3e-17  Score=146.21  Aligned_cols=158  Identities=13%  Similarity=0.183  Sum_probs=125.1

Q ss_pred             cCHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHHHCC----CCCEEEEEecCcc-------------------
Q 023411          103 VSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDAR-------------------  155 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~----~~~~~VLEIG~G~G~~t~~la~~~~----~~~~v~~iD~s~~-------------------  155 (282)
                      ++.....++..+++.    ..++.|||+||+.|+++++++..++    ++++|+++|..+.                   
T Consensus        86 v~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~  165 (282)
T 2wk1_A           86 IGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHR  165 (282)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGG
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccc
Confidence            445667777777664    4588999999999999999988764    3688999996432                   


Q ss_pred             -------HHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-cccHHHHHHHHHhhcCCCCCc
Q 023411          156 -------SLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-RMYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       156 -------~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-~~~~~~l~~~~~~~~~LkpgG  226 (282)
                             ..+.++++++..|+. ++++++.|++.+.++.+.    .++||+||+|+.+ ..+..+++.+.++   |+|||
T Consensus       166 ~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~----~~~~d~vfIDaD~y~~~~~~Le~~~p~---L~pGG  238 (282)
T 2wk1_A          166 RNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP----IDTLAVLRMDGDLYESTWDTLTNLYPK---VSVGG  238 (282)
T ss_dssp             GHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC----CCCEEEEEECCCSHHHHHHHHHHHGGG---EEEEE
T ss_pred             ccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC----CCCEEEEEEcCCccccHHHHHHHHHhh---cCCCE
Confidence                   467799999999994 889999999998877642    4689999999986 3467788999888   99999


Q ss_pred             EEEEeCCCC-CCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 023411          227 IIVIDNVLW-HGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  281 (282)
Q Consensus       227 ~lv~dd~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k  281 (282)
                      +|++||+.| +|          .+.++++|++.    .++...++++..+...-||
T Consensus       239 iIv~DD~~~~~G----------~~~Av~Ef~~~----~~i~~~i~~~~~~~v~~rk  280 (282)
T 2wk1_A          239 YVIVDDYMMCPP----------CKDAVDEYRAK----FDIADELITIDRDGVYWQR  280 (282)
T ss_dssp             EEEESSCTTCHH----------HHHHHHHHHHH----TTCCSCCEECSSSCEEEEC
T ss_pred             EEEEcCCCCCHH----------HHHHHHHHHHh----cCCceEEEEecCEEEEEEe
Confidence            999999964 22          36788888764    3567778888877776665

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.70  E-value=6.9e-17  Score=144.22  Aligned_cols=149  Identities=23%  Similarity=0.353  Sum_probs=112.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.++..     .+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~-----~~  180 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH-----KN  180 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC-----TT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc-----CC
Confidence            4678999999999999999998654 689999999999999999998653  33 468999999998876542     57


Q ss_pred             ceeEEEEcCCcc------cc-HHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEE
Q 023411          195 SYDFAFVDAEKR------MY-QEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI  267 (282)
Q Consensus       195 ~fDlV~id~~~~------~~-~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (282)
                      +||+|++|....      .+ ..+++.+.++   |+|||++++++.    .+.   ........+.++++.+..+..+..
T Consensus       181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~---LkpgG~lv~~~~----~~~---~~~~~~~~~~~~l~~vF~~v~~~~  250 (314)
T 2b2c_A          181 EFDVIITDSSDPVGPAESLFGQSYYELLRDA---LKEDGILSSQGE----SVW---LHLPLIAHLVAFNRKIFPAVTYAQ  250 (314)
T ss_dssp             CEEEEEECCC-------------HHHHHHHH---EEEEEEEEEECC----CTT---TCHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHhh---cCCCeEEEEECC----Ccc---cCHHHHHHHHHHHHHHCCcceEEE
Confidence            899999987421      12 5788888888   999999999862    111   012334567777877766666777


Q ss_pred             EEeec---CC-ceEEEEEC
Q 023411          268 SMVPI---GD-GMTICQKR  282 (282)
Q Consensus       268 ~~lp~---~~-Gl~~~~k~  282 (282)
                      ..+|.   |+ |+.+|.|+
T Consensus       251 ~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          251 SIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EECTTSGGGEEEEEEEESS
T ss_pred             EEecCcCCCceEEEEEeCC
Confidence            78887   45 88888763

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.70  E-value=1.1e-15  Score=134.48  Aligned_cols=108  Identities=15%  Similarity=0.096  Sum_probs=92.7

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .++...++.+|||||||+|..+..++...+ +++|+++|+++++++.|+++++..|+ ++++++++|+.+. +       
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~-------  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D-------  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G-------
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C-------
Confidence            356778999999999999876644444444 68999999999999999999999999 7899999999874 2       


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .++||+||+++...+....++.+.+.   |||||+|++.+.
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~---LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRY---VDTETRIIYRTY  223 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHH---CCTTCEEEEEEC
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHH---cCCCcEEEEEcC
Confidence            37899999988877788899999999   999999999874

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.70  E-value=2e-16  Score=133.37  Aligned_cols=163  Identities=13%  Similarity=0.095  Sum_probs=116.6

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC----cEEEEEc
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH----KVKIKHG  178 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~----~v~~~~g  178 (282)
                      +.+.....+..++...++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.+++++...++.+    +++++++
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            4445555666666667889999999999999999998654 5799999999999999999998777764    7999999


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCCccc-C--------CcC
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHGKVA-D--------QMV  244 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~-~--------~~~  244 (282)
                      |+.... ..     .++||+|++....++.     ..+++.+.++   |+|||+++.......+... .        ...
T Consensus        92 d~~~~~-~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T 3jwg_A           92 SLVYRD-KR-----FSGYDAATVIEVIEHLDENRLQAFEKVLFEF---TRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDH  162 (219)
T ss_dssp             CSSSCC-GG-----GTTCSEEEEESCGGGCCHHHHHHHHHHHHTT---TCCSEEEEEEEBGGGGGCCCCT-----GGGCC
T ss_pred             cccccc-cc-----cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHh---hCCCEEEEEccchhhhhhhcccCcccccccCc
Confidence            985421 11     4789999998775443     3456666666   9999988774332111111 0        000


Q ss_pred             -CChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023411          245 -NDAKTISIRNFNKNLMEDERVSISMVPIGDG  275 (282)
Q Consensus       245 -~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~G  275 (282)
                       ..-....++.|.+.+.+.-++++...+++++
T Consensus       163 ~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          163 RFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             TTSBCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             eeeecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence             0013456777878887777999998887665

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.69  E-value=8.8e-17  Score=142.98  Aligned_cols=147  Identities=18%  Similarity=0.337  Sum_probs=114.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH--hCC-CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~-~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++|||||||+|..+..+++..+ ..+|++||+++++++.|++++..  .++ .++++++++|+.+.++..     .+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~-----~~  167 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----QD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----SS
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC-----CC
Confidence            4678999999999999999998644 58999999999999999999876  344 467999999998766542     57


Q ss_pred             ceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEeCC-CCCCcccCCcCCChhhHHHHHHHHHhhhCCCeE
Q 023411          195 SYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVIDNV-LWHGKVADQMVNDAKTISIRNFNKNLMEDERVS  266 (282)
Q Consensus       195 ~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~dd~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (282)
                      +||+||+|....       ....+++.+.++   |+|||++++++. .|..        ......++++++.+..+..+.
T Consensus       168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~---LkpgG~lv~~~~~~~~~--------~~~~~~~~~~l~~~f~~v~~~  236 (304)
T 2o07_A          168 AFDVIITDSSDPMGPAESLFKESYYQLMKTA---LKEDGVLCCQGECQWLH--------LDLIKEMRQFCQSLFPVVAYA  236 (304)
T ss_dssp             CEEEEEEECC-----------CHHHHHHHHH---EEEEEEEEEEEECTTTC--------HHHHHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEECCCCCCCcchhhhHHHHHHHHHhc---cCCCeEEEEecCCcccc--------hHHHHHHHHHHHHhCCCceeE
Confidence            899999987642       234678888888   999999999863 3332        123456788888887777777


Q ss_pred             EEEeecC----CceEEEEE
Q 023411          267 ISMVPIG----DGMTICQK  281 (282)
Q Consensus       267 ~~~lp~~----~Gl~~~~k  281 (282)
                      ...+|.-    .|+.+|.|
T Consensus       237 ~~~vP~~~~g~~g~~~as~  255 (304)
T 2o07_A          237 YCTIPTYPSGQIGFMLCSK  255 (304)
T ss_dssp             EEECTTSGGGEEEEEEEES
T ss_pred             EEEeccccCcceEEEEEeC
Confidence            7788873    58888876

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.69  E-value=1.5e-16  Score=134.02  Aligned_cols=164  Identities=15%  Similarity=0.176  Sum_probs=117.7

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC----cEEEEE
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH----KVKIKH  177 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~----~v~~~~  177 (282)
                      .+.+.....+...+...++.+|||||||+|.++..+++..+ ..+|+++|+++.+++.+++++...++..    ++++++
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~   90 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ   90 (217)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE
T ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe
Confidence            34455556666677777889999999999999999998654 5799999999999999999998777764    799999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCC-----CCCcc----cCCc
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVL-----WHGKV----ADQM  243 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~-----~~g~~----~~~~  243 (282)
                      +|+.... ..     .++||+|++.....+.     ..+++.+.++   |+|||++++....     |.+..    ....
T Consensus        91 ~d~~~~~-~~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~  161 (217)
T 3jwh_A           91 GALTYQD-KR-----FHGYDAATVIEVIEHLDLSRLGAFERVLFEF---AQPKIVIVTTPNIEYNVKFANLPAGKLRHKD  161 (217)
T ss_dssp             CCTTSCC-GG-----GCSCSEEEEESCGGGCCHHHHHHHHHHHHTT---TCCSEEEEEEEBHHHHHHTC-----------
T ss_pred             CCccccc-cc-----CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHH---cCCCEEEEEccCcccchhhcccccccccccc
Confidence            9985321 11     3789999998775432     4456666666   9999988875432     11110    0010


Q ss_pred             CC-ChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023411          244 VN-DAKTISIRNFNKNLMEDERVSISMVPIGDG  275 (282)
Q Consensus       244 ~~-~~~~~~~~~~~~~~~~~~~~~~~~lp~~~G  275 (282)
                      .. .-....++.|.+.+.++-+|++...++++.
T Consensus       162 ~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          162 HRFEWTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             cccccCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            00 013456778888888888999999888764

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.68  E-value=1.2e-15  Score=125.95  Aligned_cols=110  Identities=18%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..++.++.. + ..+|+++|+++++++.++++++.+++ ++++++++|+.+..+...    .++||
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~----~~~fD  115 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGT----TSPVD  115 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCC----SSCCS
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhcc----CCCcc
Confidence            46789999999999999988774 2 46899999999999999999999998 569999999988765431    47999


Q ss_pred             EEEEcCCccc----cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          198 FAFVDAEKRM----YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       198 lV~id~~~~~----~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      +|+++.+...    ....++.+.+ .++|+|||+++++....
T Consensus       116 ~i~~~~p~~~~~~~~~~~l~~~~~-~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          116 LVLADPPYNVDSADVDAILAALGT-NGWTREGTVAVVERATT  156 (189)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHH-SSSCCTTCEEEEEEETT
T ss_pred             EEEECCCCCcchhhHHHHHHHHHh-cCccCCCeEEEEEecCC
Confidence            9999987544    4556666666 12499999999976543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.68  E-value=4.8e-16  Score=129.73  Aligned_cols=120  Identities=16%  Similarity=0.280  Sum_probs=100.3

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      ..+....+...+...++.+|||+|||+|..+..+++..+ .++|+++|+++++++.++++++..++ ++++++++|+.+.
T Consensus        25 ~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  102 (204)
T 3e05_A           25 KQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEG  102 (204)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTT
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhh
Confidence            344444444555566788999999999999999999875 68999999999999999999999998 5699999999765


Q ss_pred             HHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ++.      .++||+|+++........+++.+.++   |+|||.+++....
T Consensus       103 ~~~------~~~~D~i~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~  144 (204)
T 3e05_A          103 LDD------LPDPDRVFIGGSGGMLEEIIDAVDRR---LKSEGVIVLNAVT  144 (204)
T ss_dssp             CTT------SCCCSEEEESCCTTCHHHHHHHHHHH---CCTTCEEEEEECB
T ss_pred             hhc------CCCCCEEEECCCCcCHHHHHHHHHHh---cCCCeEEEEEecc
Confidence            432      36899999998877888899999999   9999999996553

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.68  E-value=9e-16  Score=128.64  Aligned_cols=118  Identities=18%  Similarity=0.215  Sum_probs=96.9

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ..+.....+.......++.+|||+|||+|..+..+++.   +++|+++|+++++++.|+++++..++.++++++++|+.+
T Consensus        39 ~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           39 TKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            34444445555556667889999999999999999986   589999999999999999999999988679999999987


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .++.      ..+||+||++... ... +++.+.++   |+|||.+++....
T Consensus       116 ~~~~------~~~~D~v~~~~~~-~~~-~l~~~~~~---LkpgG~lv~~~~~  156 (204)
T 3njr_A          116 ALAD------LPLPEAVFIGGGG-SQA-LYDRLWEW---LAPGTRIVANAVT  156 (204)
T ss_dssp             GGTT------SCCCSEEEECSCC-CHH-HHHHHHHH---SCTTCEEEEEECS
T ss_pred             hccc------CCCCCEEEECCcc-cHH-HHHHHHHh---cCCCcEEEEEecC
Confidence            5432      3589999998754 334 88899998   9999999997653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.68  E-value=1.1e-16  Score=137.30  Aligned_cols=116  Identities=16%  Similarity=0.288  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHH---CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      +....++..++...++.+|||||||+|+++..+++.   +.++++|++||+++++++.|+      +..++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            777778888887778899999999999999999987   444789999999999988876      23357999999997


Q ss_pred             hH--HHHHHhCCCCCceeEEEEcCCccccHHHHHHHHH-hhcCCCCCcEEEEeCC
Q 023411          182 DS--LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ-LLLQIRVGGIIVIDNV  233 (282)
Q Consensus       182 ~~--l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~-~~~~LkpgG~lv~dd~  233 (282)
                      +.  ++...    ..+||+|+++..+.++...+..+.+ +   |+|||+++++++
T Consensus       141 ~~~~l~~~~----~~~fD~I~~d~~~~~~~~~l~~~~r~~---LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHLR----EMAHPLIFIDNAHANTFNIMKWAVDHL---LEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGGS----SSCSSEEEEESSCSSHHHHHHHHHHHT---CCTTCEEEECSC
T ss_pred             hHHHHHhhc----cCCCCEEEECCchHhHHHHHHHHHHhh---CCCCCEEEEEeC
Confidence            64  33220    2479999999887777778888875 8   999999999986

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.66  E-value=5e-16  Score=126.24  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=94.6

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      ...+.......++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.+++++...++.+++ ++++|..+.++..
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~   91 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV   91 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred             HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence            33444444556778999999999999999999875 689999999999999999999999888678 8889987654431


Q ss_pred             HhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          188 ILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                           .++||+|++.....+ ..+++.+.++   |+|||.+++....
T Consensus        92 -----~~~~D~i~~~~~~~~-~~~l~~~~~~---L~~gG~l~~~~~~  129 (178)
T 3hm2_A           92 -----PDNPDVIFIGGGLTA-PGVFAAAWKR---LPVGGRLVANAVT  129 (178)
T ss_dssp             -----CSCCSEEEECC-TTC-TTHHHHHHHT---CCTTCEEEEEECS
T ss_pred             -----CCCCCEEEECCcccH-HHHHHHHHHh---cCCCCEEEEEeec
Confidence                 378999999887655 6678888888   9999999997653

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.66  E-value=7.4e-16  Score=134.12  Aligned_cols=115  Identities=13%  Similarity=0.258  Sum_probs=92.8

Q ss_pred             HHHHHHh--hcCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411          110 LLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       110 ll~~l~~--~~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (282)
                      ++..++.  ..++.+|||+|||+|..+..+++.++ ++++|+|||+|+.|++.|+++++..+...+++++++|+.+. + 
T Consensus        59 ~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~-  136 (261)
T 4gek_A           59 MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A-  136 (261)
T ss_dssp             HHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-C-
T ss_pred             HHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-c-
Confidence            3444443  35778999999999999999999874 35799999999999999999999988888899999999764 1 


Q ss_pred             HHhCCCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          187 LILNGEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                            .++||+|++....+.     ....++.+.+.   |||||++++.+...
T Consensus       137 ------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~---LkpGG~lii~e~~~  181 (261)
T 4gek_A          137 ------IENASMVVLNFTLQFLEPSERQALLDKIYQG---LNPGGALVLSEKFS  181 (261)
T ss_dssp             ------CCSEEEEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEBC
T ss_pred             ------ccccccceeeeeeeecCchhHhHHHHHHHHH---cCCCcEEEEEeccC
Confidence                  367999998766432     33467778887   99999999876544

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.65  E-value=8.5e-16  Score=126.07  Aligned_cols=135  Identities=13%  Similarity=0.120  Sum_probs=95.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++.   +++|+++|+++++++.|+++++..++ +++++++++..+.....     .++||
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~-----~~~fD   91 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYV-----REPIR   91 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTC-----CSCEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhc-----cCCcC
Confidence            46789999999999999999986   58999999999999999999999998 56999997775432111     47899


Q ss_pred             EEEEcC-Cc-----------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCe
Q 023411          198 FAFVDA-EK-----------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERV  265 (282)
Q Consensus       198 lV~id~-~~-----------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (282)
                      +|+++. ..           ......++.+.++   |||||.+++-  .|.+..    ........+.+|.+.+.. ..+
T Consensus        92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~i~--~~~~~~----~~~~~~~~~~~~~~~l~~-~~~  161 (185)
T 3mti_A           92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDR---LEVGGRLAIM--IYYGHD----GGDMEKDAVLEYVIGLDQ-RVF  161 (185)
T ss_dssp             EEEEEEC-----------CHHHHHHHHHHHHHH---EEEEEEEEEE--EC----------CHHHHHHHHHHHHSCT-TTE
T ss_pred             EEEEeCCCCCCcchhcccChhhHHHHHHHHHHh---cCCCcEEEEE--EeCCCC----CCHHHHHHHHHHHHhCCC-ceE
Confidence            999873 21           2223456777777   9999999884  444432    122334566677666543 356


Q ss_pred             EEEEee
Q 023411          266 SISMVP  271 (282)
Q Consensus       266 ~~~~lp  271 (282)
                      .+..+.
T Consensus       162 ~~~~~~  167 (185)
T 3mti_A          162 TAMLYQ  167 (185)
T ss_dssp             EEEEEE
T ss_pred             EEEEeh
Confidence            665544

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.65  E-value=1e-15  Score=136.65  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH--hC-C-CCcEEEEEcchhhHHHHHHhCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AG-V-SHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g-~-~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ..+++|||||||+|..+..+++..+ ..+|++||+++.+++.|++++..  .+ + ..+++++++|+.+.++..     .
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~  149 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----E  149 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----C
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-----C
Confidence            4678999999999999999998654 67999999999999999999875  22 2 457999999998876543     5


Q ss_pred             CceeEEEEcCCccc----------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCC
Q 023411          194 SSYDFAFVDAEKRM----------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDE  263 (282)
Q Consensus       194 ~~fDlV~id~~~~~----------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (282)
                      ++||+|++|...+.          ...+++.+.++   |+|||++++...    ....  ........+...++.+....
T Consensus       150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~---LkpgG~lv~~~~----~~~~--~~~~~~~~~~~~l~~~F~~v  220 (314)
T 1uir_A          150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAH---LNPGGVMGMQTG----MILL--THHRVHPVVHRTVREAFRYV  220 (314)
T ss_dssp             CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHT---EEEEEEEEEEEE----EECC-----CHHHHHHHHHHTTCSEE
T ss_pred             CCccEEEECCCCcccccCcchhccHHHHHHHHHHh---cCCCcEEEEEcc----Cccc--cCHHHHHHHHHHHHHHCCce
Confidence            78999999876433          46788999888   999999999621    1110  01122334455555443344


Q ss_pred             CeEEEEeecCCc---eEEEEE
Q 023411          264 RVSISMVPIGDG---MTICQK  281 (282)
Q Consensus       264 ~~~~~~lp~~~G---l~~~~k  281 (282)
                      .+....+|..+|   +.+|.|
T Consensus       221 ~~~~~~vP~~~g~~~~~~as~  241 (314)
T 1uir_A          221 RSYKNHIPGFFLNFGFLLASD  241 (314)
T ss_dssp             EEEEEEEGGGTEEEEEEEEES
T ss_pred             EEEEEecCCCCCeEEEEEEEC
Confidence            455567888766   677765

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.64  E-value=7.6e-16  Score=125.47  Aligned_cols=111  Identities=11%  Similarity=0.122  Sum_probs=90.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|..+..+++. + ..+|+++|+++++++.++++++..++.++++++++|+.+.++..     .++|
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~f  101 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-----TGRF  101 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-----CSCE
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh-----cCCC
Confidence            457789999999999999999986 3 47999999999999999999999888778999999998866544     4679


Q ss_pred             eEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          197 DFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       197 DlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |+|+++.+.  ......++.+.. .++|+|||++++.....
T Consensus       102 D~i~~~~~~~~~~~~~~~~~l~~-~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          102 DLVFLDPPYAKETIVATIEALAA-KNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHH-TTCEEEEEEEEEEEETT
T ss_pred             CEEEECCCCCcchHHHHHHHHHh-CCCcCCCcEEEEEECCc
Confidence            999999774  334455566652 24599999999975543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.64  E-value=1.6e-15  Score=125.62  Aligned_cols=140  Identities=11%  Similarity=0.149  Sum_probs=103.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.|+++++..++.++++++++|+.+.....     .++|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~f   94 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI-----DCPV   94 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-----CSCE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-----cCCc
Confidence            45678999999999999999999875467999999999999999999999998778999999987653222     5789


Q ss_pred             eEEEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCC
Q 023411          197 DFAFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDER  264 (282)
Q Consensus       197 DlV~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (282)
                      |+|+++...            .....+++.+.++   |+|||.+++..  |.+..    ........+.+|.+.+. ..+
T Consensus        95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---Lk~gG~l~~~~--~~~~~----~~~~~~~~~~~~~~~l~-~~~  164 (197)
T 3eey_A           95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMEL---LVTGGIITVVI--YYGGD----TGFEEKEKVLEFLKGVD-QKK  164 (197)
T ss_dssp             EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHH---EEEEEEEEEEE--CCBTT----TBSHHHHHHHHHHTTSC-TTT
T ss_pred             eEEEEcCCcccCcccccccCcccHHHHHHHHHHh---CcCCCEEEEEE--ccCCC----CcHHHHHHHHHHHHhCC-CCc
Confidence            999988642            1234577888888   99999999854  33321    12233445556654432 235


Q ss_pred             eEEEEee
Q 023411          265 VSISMVP  271 (282)
Q Consensus       265 ~~~~~lp  271 (282)
                      +++....
T Consensus       165 ~~v~~~~  171 (197)
T 3eey_A          165 FIVQRTD  171 (197)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6665444

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.64  E-value=1e-15  Score=131.74  Aligned_cols=124  Identities=21%  Similarity=0.220  Sum_probs=99.4

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      ...+.....+...+...++.+|||||||+|..+..+++..  +.+|+++|+++.+++.++++++..++.++++++++|+.
T Consensus        19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~   96 (256)
T 1nkv_A           19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   96 (256)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH
Confidence            3445555555555666788899999999999999999887  47999999999999999999999998878999999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +...       .++||+|++.....   +....++.+.++   |||||.+++.+..|..
T Consensus        97 ~~~~-------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~---LkpgG~l~~~~~~~~~  145 (256)
T 1nkv_A           97 GYVA-------NEKCDVAACVGATWIAGGFAGAEELLAQS---LKPGGIMLIGEPYWRQ  145 (256)
T ss_dssp             TCCC-------SSCEEEEEEESCGGGTSSSHHHHHHHTTS---EEEEEEEEEEEEEETT
T ss_pred             hCCc-------CCCCCEEEECCChHhcCCHHHHHHHHHHH---cCCCeEEEEecCcccC
Confidence            6421       47899999876643   345667777666   9999999997765543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.64  E-value=2.2e-15  Score=132.46  Aligned_cols=145  Identities=17%  Similarity=0.166  Sum_probs=106.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--CC--------CCcEEEEEcchhhHHHHH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV--------SHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~--------~~~v~~~~gd~~~~l~~l  187 (282)
                      ..+++|||||||+|..+..+++. + ..+|++||+++.+++.|++++ ..  ++        .++++++.+|+.+.++. 
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence            46789999999999999999987 4 689999999999999999988 43  32        46799999999876654 


Q ss_pred             HhCCCCCceeEEEEcCCcc-----c--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhh
Q 023411          188 ILNGEASSYDFAFVDAEKR-----M--YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLM  260 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~~-----~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~  260 (282)
                           .++||+|++|....     .  ...+++.+.++   |+|||+++++...    ..   ........+.+.++.+.
T Consensus       150 -----~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~---L~pgG~lv~~~~~----~~---~~~~~~~~~~~~l~~~f  214 (281)
T 1mjf_A          150 -----NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDA---LNNPGIYVTQAGS----VY---LFTDELISAYKEMKKVF  214 (281)
T ss_dssp             -----CCCEEEEEEECCCCC-----TTSHHHHHHHHHH---EEEEEEEEEEEEE----TT---TSHHHHHHHHHHHHHHC
T ss_pred             -----cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHh---cCCCcEEEEEcCC----cc---cCHHHHHHHHHHHHHHC
Confidence                 37899999997631     1  36788899998   9999999997321    10   01122344555555554


Q ss_pred             hCCCeEEEEeecCCc---eEEEEE
Q 023411          261 EDERVSISMVPIGDG---MTICQK  281 (282)
Q Consensus       261 ~~~~~~~~~lp~~~G---l~~~~k  281 (282)
                      ....+....+|..+|   +.+|.|
T Consensus       215 ~~v~~~~~~vP~~~g~~~~~~as~  238 (281)
T 1mjf_A          215 DRVYYYSFPVIGYASPWAFLVGVK  238 (281)
T ss_dssp             SEEEEEEECCTTSSSSEEEEEEEE
T ss_pred             CceEEEEEecCCCCceEEEEEeeC
Confidence            444455566787655   788876

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.63  E-value=1e-15  Score=131.84  Aligned_cols=111  Identities=14%  Similarity=0.242  Sum_probs=92.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|..+..+++..+  ++|+++|+++.+++.+++++...++.++++++++|+.+.. .     ..++
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~~~  114 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-F-----QNEE  114 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-S-----CTTC
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-C-----CCCC
Confidence            445678999999999999999999875  5999999999999999999999999989999999996532 1     1479


Q ss_pred             eeEEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          196 YDFAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       196 fDlV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ||+|++.....+  ....++.+.++   |+|||++++.+..|..
T Consensus       115 fD~v~~~~~l~~~~~~~~l~~~~~~---L~pgG~l~~~~~~~~~  155 (257)
T 3f4k_A          115 LDLIWSEGAIYNIGFERGMNEWSKY---LKKGGFIAVSEASWFT  155 (257)
T ss_dssp             EEEEEEESCSCCCCHHHHHHHHHTT---EEEEEEEEEEEEEESS
T ss_pred             EEEEEecChHhhcCHHHHHHHHHHH---cCCCcEEEEEEeeccC
Confidence            999999876443  55667777777   9999999998876544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.62  E-value=1.1e-15  Score=132.84  Aligned_cols=110  Identities=12%  Similarity=0.231  Sum_probs=91.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++. + .++|+++|+++.+++.++++++..++.++++++++|+.+..  .    ..++|
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~f  115 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--F----RNEEL  115 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C----CTTCE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--C----CCCCE
Confidence            557889999999999999999987 3 57999999999999999999999999889999999996532  1    14799


Q ss_pred             eEEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++.....+  ...+++.+.++   |+|||++++.+..|..
T Consensus       116 D~i~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~~~  155 (267)
T 3kkz_A          116 DLIWSEGAIYNIGFERGLNEWRKY---LKKGGYLAVSECSWFT  155 (267)
T ss_dssp             EEEEESSCGGGTCHHHHHHHHGGG---EEEEEEEEEEEEEESS
T ss_pred             EEEEEcCCceecCHHHHHHHHHHH---cCCCCEEEEEEeeecC
Confidence            99999876443  45567777777   9999999998876543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.62  E-value=3.1e-16  Score=134.42  Aligned_cols=110  Identities=18%  Similarity=0.181  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|.++.++++..+  .+|++||+++++++.|+++....+  .+++++.+|+.+....+.    +++||
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~----~~~FD  130 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP----DGHFD  130 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC----TTCEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccccc----ccCCc
Confidence            3667999999999999999988654  689999999999999999887655  358999999976654432    57899


Q ss_pred             EEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          198 FAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       198 lV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      .|+.|....        +...+++++.++   |||||++++.+....+.
T Consensus       131 ~i~~D~~~~~~~~~~~~~~~~~~~e~~rv---LkPGG~l~f~~~~~~~~  176 (236)
T 3orh_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRL---LKPGGVLTYCNLTSWGE  176 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHH---EEEEEEEEECCHHHHHH
T ss_pred             eEEEeeeecccchhhhcchhhhhhhhhhe---eCCCCEEEEEecCCchh
Confidence            999986522        234567778888   99999999988765554

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.61  E-value=1.2e-14  Score=124.45  Aligned_cols=105  Identities=20%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..++.++...+ +++|+++|+++++++.++++++..++.+ ++++++|+.+.....   ...++||
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~---~~~~~fD  143 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRK---DVRESYD  143 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCT---TTTTCEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccc---cccCCcc
Confidence            4678999999999999999998655 6899999999999999999999999875 999999996642100   0036899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++... .+...+++.+.++   |+|||++++.
T Consensus       144 ~V~~~~~-~~~~~~l~~~~~~---LkpgG~l~~~  173 (240)
T 1xdz_A          144 IVTARAV-ARLSVLSELCLPL---VKKNGLFVAL  173 (240)
T ss_dssp             EEEEECC-SCHHHHHHHHGGG---EEEEEEEEEE
T ss_pred             EEEEecc-CCHHHHHHHHHHh---cCCCCEEEEE
Confidence            9999885 5567788888888   9999999884

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.61  E-value=4.2e-15  Score=133.75  Aligned_cols=113  Identities=21%  Similarity=0.362  Sum_probs=91.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ ..+++++++|+.+.++...    .+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~----~~  193 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA----EG  193 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC----TT
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhcc----CC
Confidence            4678999999999999999998654 679999999999999999998753  44 3579999999987655321    36


Q ss_pred             ceeEEEEcCCcc----c---cHHHHHHHHHhhcCCCCCcEEEEe-CCCCCCc
Q 023411          195 SYDFAFVDAEKR----M---YQEYFELLLQLLLQIRVGGIIVID-NVLWHGK  238 (282)
Q Consensus       195 ~fDlV~id~~~~----~---~~~~l~~~~~~~~~LkpgG~lv~d-d~~~~g~  238 (282)
                      +||+|++|....    .   ...+++.+.++   |+|||+++++ +..|.+.
T Consensus       194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~---LkpgG~lv~~~~~~~~~~  242 (334)
T 1xj5_A          194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARA---LRPGGVVCTQAESLWLHM  242 (334)
T ss_dssp             CEEEEEECCCCTTSGGGGGGSHHHHHHHHHH---EEEEEEEEEECCCTTTCH
T ss_pred             CccEEEECCCCccCcchhhhHHHHHHHHHHh---cCCCcEEEEecCCccccH
Confidence            899999986521    1   46789999998   9999999997 5666553

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.61  E-value=3.9e-15  Score=124.42  Aligned_cols=106  Identities=14%  Similarity=0.125  Sum_probs=85.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|..++.++...  ..+|+++|+++.+++.|+++++.+++ ++++++++|+.+.++..     .++||+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~-----~~~fD~  125 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK-----GTPHNI  125 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC-----CCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc-----CCCCCE
Confidence            67799999999999999877653  25999999999999999999999888 56999999998755421     478999


Q ss_pred             EEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ||++.+  .......++.+.+ .++|+|||++++...
T Consensus       126 V~~~~p~~~~~~~~~l~~l~~-~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          126 VFVDPPFRRGLLEETINLLED-NGWLADEALIYVESE  161 (202)
T ss_dssp             EEECCSSSTTTHHHHHHHHHH-TTCEEEEEEEEEEEE
T ss_pred             EEECCCCCCCcHHHHHHHHHh-cCccCCCcEEEEEEC
Confidence            999977  2345556666655 345999999988654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.61  E-value=1.1e-14  Score=119.28  Aligned_cols=120  Identities=20%  Similarity=0.305  Sum_probs=99.9

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .........+.......++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++++...++.++++++++|+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   92 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence            3445555566666666788899999999999999999864   7999999999999999999999988667999999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +.++.      .++||+|+++...++...+++.+.++   |+|||.+++...
T Consensus        93 ~~~~~------~~~~D~v~~~~~~~~~~~~l~~~~~~---l~~gG~l~~~~~  135 (192)
T 1l3i_A           93 EALCK------IPDIDIAVVGGSGGELQEILRIIKDK---LKPGGRIIVTAI  135 (192)
T ss_dssp             HHHTT------SCCEEEEEESCCTTCHHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             Hhccc------CCCCCEEEECCchHHHHHHHHHHHHh---cCCCcEEEEEec
Confidence            63332      26899999998877788889999888   999999998654

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.61  E-value=2.9e-15  Score=125.14  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=85.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCCCCc-e
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS-Y  196 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~~~~-f  196 (282)
                      ++.+|||+|||+|.+++.++...  ..+|+++|+|+++++.|+++++.+++. ++++++++|+.+.++..    ..++ |
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~----~~~~~f  126 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP----QNQPHF  126 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC----CSSCCE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh----ccCCCC
Confidence            67799999999999999877653  269999999999999999999999884 57999999997654321    1367 9


Q ss_pred             eEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          197 DFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       197 DlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |+|+++.+.  ......++.+.+ .++|+|||++++.....
T Consensus       127 D~I~~~~~~~~~~~~~~l~~~~~-~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          127 DVVFLDPPFHFNLAEQAISLLCE-NNWLKPNALIYVETEKD  166 (201)
T ss_dssp             EEEEECCCSSSCHHHHHHHHHHH-TTCEEEEEEEEEEEESS
T ss_pred             CEEEECCCCCCccHHHHHHHHHh-cCccCCCcEEEEEECCC
Confidence            999999872  334555666633 34599999999865543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.60  E-value=5.5e-15  Score=127.42  Aligned_cols=119  Identities=22%  Similarity=0.273  Sum_probs=101.0

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++++++|+++++++.|+++++..++.++++++++|+.
T Consensus        76 ~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  155 (255)
T 3mb5_A           76 IVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY  155 (255)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG
T ss_pred             cccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh
Confidence            45666777777777788899999999999999999999855478999999999999999999999999888999999998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +.++       .++||+|+++...  ...+++.+.++   |+|||.+++..
T Consensus       156 ~~~~-------~~~~D~v~~~~~~--~~~~l~~~~~~---L~~gG~l~~~~  194 (255)
T 3mb5_A          156 EGIE-------EENVDHVILDLPQ--PERVVEHAAKA---LKPGGFFVAYT  194 (255)
T ss_dssp             GCCC-------CCSEEEEEECSSC--GGGGHHHHHHH---EEEEEEEEEEE
T ss_pred             hccC-------CCCcCEEEECCCC--HHHHHHHHHHH---cCCCCEEEEEE
Confidence            6432       5789999997653  34568888888   99999999854

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.60  E-value=7.3e-15  Score=120.23  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++..+++.++++++++|+.+..+.+...  .++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~fD  118 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE--KLQFD  118 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT--TCCEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc--CCCCC
Confidence            46779999999999999998873 2 47999999999999999999999998778999999998866543211  37899


Q ss_pred             EEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|+++.+.  ......+..+.. .++|+|||++++....
T Consensus       119 ~i~~~~~~~~~~~~~~~~~l~~-~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          119 LVLLDPPYAKQEIVSQLEKMLE-RQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEECCCGGGCCHHHHHHHHHH-TTCEEEEEEEEEEEET
T ss_pred             EEEECCCCCchhHHHHHHHHHH-hcccCCCCEEEEEeCC
Confidence            99999773  344556666632 4559999999987544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.60  E-value=8.3e-15  Score=129.62  Aligned_cols=107  Identities=7%  Similarity=0.084  Sum_probs=92.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..+  .+|+++|+|+++++.+++++...++.++++++++|+.+.         .++|
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~f  138 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---------DEPV  138 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------CCCC
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---------CCCc
Confidence            35678999999999999999999864  799999999999999999999999988899999999764         3899


Q ss_pred             eEEEEcCCcccc------------HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKRMY------------QEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~~~------------~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++....++.            ..+++.+.++   |||||.+++.++..+.
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~~~~  188 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNL---TPDDGRMLLHTITIPD  188 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHS---SCTTCEEEEEEEECCC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHh---cCCCcEEEEEEEeccC
Confidence            999987664443            6778888888   9999999998876543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.59  E-value=4.2e-15  Score=128.87  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=93.7

Q ss_pred             HHHHHHHHhhc-CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411          108 AQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       108 ~~ll~~l~~~~-~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (282)
                      +.++..++... ++.+|||+|||+|..++.+++..+  ++|+++|+++.+++.|++++..+++.++++++++|+.+....
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            45566666666 788999999999999999998754  499999999999999999999999998999999999876432


Q ss_pred             HHhCCCCCceeEEEEcCCcc-----------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          187 LILNGEASSYDFAFVDAEKR-----------------------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~~~-----------------------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +.    .++||+|+++.+..                       ....+++.+.++   |+|||.+++
T Consensus       115 ~~----~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~---LkpgG~l~~  174 (259)
T 3lpm_A          115 IP----KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASL---LKQGGKANF  174 (259)
T ss_dssp             SC----TTCEEEEEECCCC-----------------------HHHHHHHHHHHHH---EEEEEEEEE
T ss_pred             hc----cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHH---ccCCcEEEE
Confidence            21    47999999975521                       124577788888   999999998

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.59  E-value=8.9e-15  Score=123.90  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=87.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +..+|||||||+|.++..+++..| +.+|+|||+++.+++.|+++++..++.+ ++++++|+.+.++....   +++||.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~---~~~~d~  108 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIP---DNSLRM  108 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSC---TTCEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcC---CCChhe
Confidence            567999999999999999999887 6899999999999999999999998875 99999999887664221   579999


Q ss_pred             EEEc---CCcc--c------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVD---AEKR--M------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id---~~~~--~------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |++.   .+..  +      ...+++.+.++   |||||++++.
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~---LkpGG~l~i~  149 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSK---LQLGGVFHMA  149 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHH---cCCCcEEEEE
Confidence            9986   2221  1      13588999998   9999999874

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.59  E-value=5.5e-15  Score=123.62  Aligned_cols=105  Identities=19%  Similarity=0.235  Sum_probs=89.0

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      +|||+|||+|..+..+++. + +.+++++|+++.+++.+++++...++.++++++++|+.+..  .    ..++||+|++
T Consensus        46 ~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~----~~~~~D~v~~  117 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--I----EDNYADLIVS  117 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--S----CTTCEEEEEE
T ss_pred             EEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--C----CcccccEEEE
Confidence            9999999999999999997 3 57999999999999999999999998888999999997632  1    1479999999


Q ss_pred             cCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          202 DAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       202 d~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      .....   +....++.+.++   |+|||.+++.+...+.
T Consensus       118 ~~~l~~~~~~~~~l~~~~~~---L~pgG~l~~~~~~~~~  153 (219)
T 3dlc_A          118 RGSVFFWEDVATAFREIYRI---LKSGGKTYIGGGFGNK  153 (219)
T ss_dssp             ESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEECCSSH
T ss_pred             CchHhhccCHHHHHHHHHHh---CCCCCEEEEEeccCcH
Confidence            87644   346678888888   9999999998755443

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.58  E-value=9.7e-15  Score=127.99  Aligned_cols=106  Identities=15%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++|||||||+|..+..+++..+ ..+|++||+++.+++.|++++...  ++ .++++++.+|+.+.++..     .+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~-----~~  147 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-----EN  147 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-----CS
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-----CC
Confidence            3578999999999999999998643 579999999999999999988652  34 468999999998776542     47


Q ss_pred             ceeEEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 SYDFAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +||+|++|.....       ...+++.+.+.   |+|||++++..
T Consensus       148 ~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~---L~pgG~lv~~~  189 (275)
T 1iy9_A          148 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKA---LKEDGIFVAQT  189 (275)
T ss_dssp             CEEEEEESCSSCCSCCCCCSTTHHHHHHHHH---EEEEEEEEEEC
T ss_pred             CeeEEEECCCCCCCcchhhhHHHHHHHHHHh---cCCCcEEEEEc
Confidence            8999999876321       25789999998   99999999974

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.58  E-value=3.6e-15  Score=130.76  Aligned_cols=107  Identities=9%  Similarity=0.076  Sum_probs=90.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..+  .+|+++|+++++++.+++++...++.++++++++|+.+.         .++|
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---------~~~f  130 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---------DEPV  130 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------CCCC
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------CCCe
Confidence            35677999999999999999996654  699999999999999999999888888899999998643         3789


Q ss_pred             eEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++....     .+...+++.+.++   |||||.+++.+.....
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~~~  173 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRL---LPADGVMLLHTITGLH  173 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHH---SCTTCEEEEEEEEECC
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHh---cCCCCEEEEEEecCCC
Confidence            999987653     3456788888888   9999999998776543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.57  E-value=5.8e-15  Score=131.49  Aligned_cols=107  Identities=7%  Similarity=0.057  Sum_probs=90.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++++++.+++++...++.++++++++|+.+.         +++|
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~f  156 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---------AEPV  156 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------CCCC
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC---------CCCc
Confidence            3467799999999999999999875  3699999999999999999999988888899999998653         3789


Q ss_pred             eEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++....     .+...+++.+.++   |+|||.+++.+.....
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNI---MPADGRMTVQSSVSYH  199 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHH---SCTTCEEEEEEEECCC
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHh---cCCCcEEEEEEeccCC
Confidence            999987653     3456788888888   9999999998776544

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.57  E-value=2.7e-14  Score=117.04  Aligned_cols=108  Identities=15%  Similarity=0.194  Sum_probs=88.7

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~  191 (282)
                      ..+...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...++.+ +++++++|+.+..+      
T Consensus        46 ~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~------  116 (194)
T 1dus_A           46 ENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK------  116 (194)
T ss_dssp             HHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT------
T ss_pred             HHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc------
Confidence            3334456779999999999999999987   4799999999999999999999888775 69999999876432      


Q ss_pred             CCCceeEEEEcCCcc----ccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          192 EASSYDFAFVDAEKR----MYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       192 ~~~~fDlV~id~~~~----~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                       .++||+|+++....    ....+++.+.++   |+|||.+++...
T Consensus       117 -~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~~  158 (194)
T 1dus_A          117 -DRKYNKIITNPPIRAGKEVLHRIIEEGKEL---LKDNGEIWVVIQ  158 (194)
T ss_dssp             -TSCEEEEEECCCSTTCHHHHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             -cCCceEEEECCCcccchhHHHHHHHHHHHH---cCCCCEEEEEEC
Confidence             47899999987643    345677778888   999999998654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.57  E-value=4.3e-14  Score=113.83  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|..+..+++..+   +|+++|+++++++.+++++...++  +++++++|+.+.++.....  .++||+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~--~~~~D~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ--GERFTV  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT--TCCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc--CCceEE
Confidence            677999999999999999998643   599999999999999999999887  6999999998865544321  248999


Q ss_pred             EEEcCCc-cccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          199 AFVDAEK-RMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       199 V~id~~~-~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |+++.+. ......++.+.+ .++|+|||++++.....
T Consensus       114 i~~~~~~~~~~~~~~~~~~~-~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          114 AFMAPPYAMDLAALFGELLA-SGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             EEECCCTTSCTTHHHHHHHH-HTCEEEEEEEEEEEETT
T ss_pred             EEECCCCchhHHHHHHHHHh-hcccCCCcEEEEEeCCc
Confidence            9999754 445566777762 24499999999865543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.57  E-value=2.8e-14  Score=120.22  Aligned_cols=104  Identities=15%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|.++..+++..| +.+|+|+|+++.+++.|++++...++. +++++++|+.+....+.    .++||.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~~----~~~~d~  111 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFE----PGEVKR  111 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCC----TTSCCE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcC----cCCcCE
Confidence            567999999999999999999876 789999999999999999999998885 49999999987432221    468999


Q ss_pred             EEEcCC---cc--c------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDAE---KR--M------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~~---~~--~------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |++...   ..  +      ...+++.+.++   |+|||.+++.
T Consensus       112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~---LkpgG~l~~~  152 (213)
T 2fca_A          112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEV---MGKGGSIHFK  152 (213)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHH---HTTSCEEEEE
T ss_pred             EEEECCCCCcCccccccccCcHHHHHHHHHH---cCCCCEEEEE
Confidence            987532   11  1      46788999998   9999999884

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.57  E-value=2.1e-14  Score=120.72  Aligned_cols=104  Identities=16%  Similarity=0.194  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|.++..+++..| +.+++++|+++.+++.|++++...++. +++++++|+.+....+    ..++||+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~----~~~~~D~  114 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYF----EDGEIDR  114 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTS----CTTCCSE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc----CCCCCCE
Confidence            567999999999999999999887 789999999999999999999999884 6999999997632111    1468999


Q ss_pred             EEEcCCcc-----------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDAEKR-----------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~~~~-----------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+++....           ....+++.+.++   |+|||++++.
T Consensus       115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~  155 (214)
T 1yzh_A          115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRI---LPENGEIHFK  155 (214)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHH---SCTTCEEEEE
T ss_pred             EEEECCCCccccchhhhccCCHHHHHHHHHH---cCCCcEEEEE
Confidence            99875532           235788999998   9999999884

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=9.8e-15  Score=126.85  Aligned_cols=119  Identities=20%  Similarity=0.264  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH---hCCCCcEEEEEcchhhHH
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~~~~v~~~~gd~~~~l  184 (282)
                      +.++..++...++.+|||+|||+|..++.++...+ +.+|+++|+++++++.|++++..   +++.++++++++|+.+..
T Consensus        25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~  103 (260)
T 2ozv_A           25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRA  103 (260)
T ss_dssp             HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCH
T ss_pred             HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHh
Confidence            44555666666778999999999999999999886 68999999999999999999998   888888999999998764


Q ss_pred             HHHHhC-CCCCceeEEEEcCCcc---------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          185 KALILN-GEASSYDFAFVDAEKR---------------------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       185 ~~l~~~-~~~~~fDlV~id~~~~---------------------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +..... ...++||+|+++.+..                     ....+++.+.++   |+|||.+++
T Consensus       104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~---LkpgG~l~~  168 (260)
T 2ozv_A          104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAI---MVSGGQLSL  168 (260)
T ss_dssp             HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHH---EEEEEEEEE
T ss_pred             hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHH---cCCCCEEEE
Confidence            422111 1247899999985421                     245677888888   999999987

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.56  E-value=1.3e-14  Score=121.32  Aligned_cols=113  Identities=20%  Similarity=0.310  Sum_probs=93.7

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ..+.....+...+...++.+|||||||+|..+..+++.   +++|+++|+++++++.++++++..++. +++++++|+.+
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  136 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQ  136 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence            45666666666667778899999999999999999987   479999999999999999999998887 59999999976


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+.      .++||+|+++...++..+   .+.++   |+|||++++.
T Consensus       137 ~~~~------~~~~D~i~~~~~~~~~~~---~~~~~---L~pgG~lv~~  173 (210)
T 3lbf_A          137 GWQA------RAPFDAIIVTAAPPEIPT---ALMTQ---LDEGGILVLP  173 (210)
T ss_dssp             CCGG------GCCEEEEEESSBCSSCCT---HHHHT---EEEEEEEEEE
T ss_pred             CCcc------CCCccEEEEccchhhhhH---HHHHh---cccCcEEEEE
Confidence            4332      479999999977665543   46677   9999999985

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.56  E-value=4.5e-14  Score=131.90  Aligned_cols=145  Identities=16%  Similarity=0.241  Sum_probs=108.6

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +......++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+.  ++++++|+.+
T Consensus        85 vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~  162 (464)
T 3m6w_A           85 IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRA  162 (464)
T ss_dssp             ECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHH
T ss_pred             EECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHH
Confidence            34444556666777778899999999999999999999876689999999999999999999999986  9999999987


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCcc---------c----------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          183 SLKALILNGEASSYDFAFVDAEKR---------M----------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~---------~----------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      .....     .++||+|++|++..         +                ....++.+.++   |||||+||....-+..
T Consensus       163 l~~~~-----~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~---LkpGG~LvysTCs~~~  234 (464)
T 3m6w_A          163 LAEAF-----GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRL---LGPGGVLVYSTCTFAP  234 (464)
T ss_dssp             HHHHH-----CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTT---EEEEEEEEEEESCCCG
T ss_pred             hhhhc-----cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEeccCch
Confidence            65434     58999999987631         1                14455666666   9999999987654332


Q ss_pred             cccCCcCCChhhHHHHHHHHHhhhCCCeEEE
Q 023411          238 KVADQMVNDAKTISIRNFNKNLMEDERVSIS  268 (282)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (282)
                      .        ++..-+..|++   +.|+++..
T Consensus       235 e--------Ene~vv~~~l~---~~~~~~l~  254 (464)
T 3m6w_A          235 E--------ENEGVVAHFLK---AHPEFRLE  254 (464)
T ss_dssp             G--------GTHHHHHHHHH---HCTTEEEE
T ss_pred             h--------cCHHHHHHHHH---HCCCcEEE
Confidence            2        23344566654   34555443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.56  E-value=6e-14  Score=122.77  Aligned_cols=145  Identities=15%  Similarity=0.183  Sum_probs=107.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      ..++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+. +++++++|+.+.....
T Consensus        72 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYL  150 (274)
T ss_dssp             GGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhh
Confidence            344555666678889999999999999999998864489999999999999999999999987 6999999998764432


Q ss_pred             HhCCCCCceeEEEEcCCc---------------------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCC
Q 023411          188 ILNGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVND  246 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~---------------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~  246 (282)
                      ...  .++||+|++|.+.                     .....+++.+.++   |||||.+++........        
T Consensus       151 ~~~--~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~lv~stcs~~~~--------  217 (274)
T 3ajd_A          151 LKN--EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDL---LKKDGELVYSTCSMEVE--------  217 (274)
T ss_dssp             HHT--TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHH---EEEEEEEEEEESCCCTT--------
T ss_pred             hhc--cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEEECCCChH--------
Confidence            111  3689999999542                     2235677888888   99999999976543322        


Q ss_pred             hhhHHHHHHHHHhhhCCCeEEEE
Q 023411          247 AKTISIRNFNKNLMEDERVSISM  269 (282)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~  269 (282)
                      ++..-++.|++   +.++++..-
T Consensus       218 ene~~v~~~l~---~~~~~~~~~  237 (274)
T 3ajd_A          218 ENEEVIKYILQ---KRNDVELII  237 (274)
T ss_dssp             SSHHHHHHHHH---HCSSEEEEC
T ss_pred             HhHHHHHHHHH---hCCCcEEec
Confidence            11233455553   456666543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.56  E-value=2e-14  Score=127.28  Aligned_cols=105  Identities=15%  Similarity=0.325  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH--hCC-CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~-~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+.+|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++..  .++ .++++++++|+.+.++..     .+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  162 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----KN  162 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----SS
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC-----CC
Confidence            3568999999999999999998654 58999999999999999999865  233 457999999998754432     47


Q ss_pred             ceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +||+|++|....        ....+++.+.++   |+|||++++.
T Consensus       163 ~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~---LkpgG~lv~~  204 (296)
T 1inl_A          163 EFDVIIIDSTDPTAGQGGHLFTEEFYQACYDA---LKEDGVFSAE  204 (296)
T ss_dssp             CEEEEEEEC----------CCSHHHHHHHHHH---EEEEEEEEEE
T ss_pred             CceEEEEcCCCcccCchhhhhHHHHHHHHHHh---cCCCcEEEEE
Confidence            899999986533        236788899898   9999999996

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.56  E-value=3.8e-14  Score=118.12  Aligned_cols=103  Identities=11%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...++.+ ++++++|+.+..        .++||
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~fD  127 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--------DGKFD  127 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--------CSCEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--------CCCce
Confidence            46779999999999999998874 3 4699999999999999999999998876 999999987632        57999


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|+++...+....+++.+.++   |+|||++++.+..
T Consensus       128 ~i~~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~~~  161 (205)
T 3grz_A          128 LIVANILAEILLDLIPQLDSH---LNEDGQVIFSGID  161 (205)
T ss_dssp             EEEEESCHHHHHHHGGGSGGG---EEEEEEEEEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHHh---cCCCCEEEEEecC
Confidence            999998877666677777777   9999999996543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.56  E-value=1.1e-14  Score=126.55  Aligned_cols=110  Identities=16%  Similarity=0.217  Sum_probs=90.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..  +++|+++|+++.+++.+++++...++.++++++++|+.+.. .     ..++|
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~~~f  130 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-F-----EDASF  130 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-S-----CTTCE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-C-----CCCCc
Confidence            4567899999999999999999875  48999999999999999999999998888999999987631 1     14789


Q ss_pred             eEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++.....   +...+++.+.++   |+|||.+++.+....+
T Consensus       131 D~v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~i~~~~~~~  171 (273)
T 3bus_A          131 DAVWALESLHHMPDRGRALREMARV---LRPGGTVAIADFVLLA  171 (273)
T ss_dssp             EEEEEESCTTTSSCHHHHHHHHHTT---EEEEEEEEEEEEEESS
T ss_pred             cEEEEechhhhCCCHHHHHHHHHHH---cCCCeEEEEEEeeccC
Confidence            9999876643   345667777777   9999999998876543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=1.6e-13  Score=111.38  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=91.7

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ..+.....+.......++.+|||+|||+|..+..+++  + ..+++++|+++.+++.++++++.+++. +++++++|+.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~   94 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED   94 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc
Confidence            3344444555555566778999999999999999998  3 689999999999999999999998874 59999999976


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .++       .++||+|+++.. .....+++.+.+    + |||.+++...
T Consensus        95 ~~~-------~~~~D~i~~~~~-~~~~~~l~~~~~----~-~gG~l~~~~~  132 (183)
T 2yxd_A           95 VLD-------KLEFNKAFIGGT-KNIEKIIEILDK----K-KINHIVANTI  132 (183)
T ss_dssp             HGG-------GCCCSEEEECSC-SCHHHHHHHHHH----T-TCCEEEEEES
T ss_pred             ccc-------CCCCcEEEECCc-ccHHHHHHHHhh----C-CCCEEEEEec
Confidence            322       368999999988 666777777765    4 9999999764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.55  E-value=1.5e-14  Score=125.03  Aligned_cols=103  Identities=24%  Similarity=0.358  Sum_probs=86.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..++.++...+ +++|+++|+++.+++.++++++..++.+ ++++++|+.+....   ....++||+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~---~~~~~~fD~  154 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLARE---AGHREAYAR  154 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTS---TTTTTCEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcc---cccCCCceE
Confidence            578999999999999999999876 7899999999999999999999999976 99999999764321   001379999


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |++.+.. ....+++.+.++   |+|||.+++
T Consensus       155 I~s~a~~-~~~~ll~~~~~~---LkpgG~l~~  182 (249)
T 3g89_A          155 AVARAVA-PLCVLSELLLPF---LEVGGAAVA  182 (249)
T ss_dssp             EEEESSC-CHHHHHHHHGGG---EEEEEEEEE
T ss_pred             EEECCcC-CHHHHHHHHHHH---cCCCeEEEE
Confidence            9998763 456778888888   999999887

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.55  E-value=7.5e-14  Score=117.23  Aligned_cols=114  Identities=14%  Similarity=0.155  Sum_probs=93.1

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .....++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...++. +++++++|+.+..  .    ..
T Consensus        32 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--~----~~  104 (219)
T 3dh0_A           32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP--L----PD  104 (219)
T ss_dssp             HHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS--S----CS
T ss_pred             HhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC--C----CC
Confidence            334556789999999999999999998754689999999999999999999998877 5999999987542  1    15


Q ss_pred             CceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          194 SSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       194 ~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ++||+|++.....   +...+++.+.++   |+|||.+++.+.....
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~~~~  148 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRV---AKPFAYLAIIDWKKEE  148 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHH---EEEEEEEEEEEECSSC
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHH---hCCCeEEEEEEecccc
Confidence            7899999987744   346678888888   9999999997655443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.55  E-value=8.2e-14  Score=124.38  Aligned_cols=125  Identities=17%  Similarity=0.218  Sum_probs=101.2

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      ..+......++..++...++.+|||+|||+|..+..+++.++..++|+++|+++.+++.++++++..|+.+ ++++++|+
T Consensus       100 ~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~  178 (315)
T 1ixk_A          100 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSS  178 (315)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCG
T ss_pred             EEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECCh
Confidence            34556666677777777888999999999999999999988656899999999999999999999999874 99999999


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      .+... .     .++||+|++|.+...                         ...+++.+.++   |||||++++.....
T Consensus       179 ~~~~~-~-----~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~---LkpGG~lv~stcs~  249 (315)
T 1ixk_A          179 LHIGE-L-----NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV---LKPGGILVYSTCSL  249 (315)
T ss_dssp             GGGGG-G-----CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEEESCC
T ss_pred             hhccc-c-----cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEEeCCC
Confidence            76532 2     478999999865210                         13567777777   99999999976543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.54  E-value=3.5e-14  Score=127.10  Aligned_cols=106  Identities=21%  Similarity=0.342  Sum_probs=87.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH--hCC-CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~-~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..+++|||||||+|..+..+++..+ ..+|+++|+++++++.|++++..  .++ .++++++++|+.+.++..     .+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  188 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-----TN  188 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-----CS
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-----CC
Confidence            4678999999999999999998644 68999999999999999999875  233 457999999998766543     57


Q ss_pred             ceeEEEEcCCcc-----c-c-HHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 SYDFAFVDAEKR-----M-Y-QEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~~-----~-~-~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +||+|++|....     . + ..+++.+.+.   |+|||++++..
T Consensus       189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~---LkpgG~lv~~~  230 (321)
T 2pt6_A          189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNA---LKPNGYCVAQC  230 (321)
T ss_dssp             CEEEEEEECCCSSSGGGGGSSHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             CceEEEECCcCCCCcchhhhHHHHHHHHHHh---cCCCcEEEEEc
Confidence            899999987411     1 1 6788999998   99999999963

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.54  E-value=4.7e-14  Score=119.58  Aligned_cols=135  Identities=15%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       117 ~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ..++.+|||+||| +|..+..+++..  +.+|+++|+++.+++.|++++..+++  +++++++|+....+ +.    .++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-~~----~~~  123 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKG-VV----EGT  123 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTT-TC----CSC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhh-cc----cCc
Confidence            4578899999999 999999999875  47999999999999999999999888  69999999642211 11    479


Q ss_pred             eeEEEEcCCccc----------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHH
Q 023411          196 YDFAFVDAEKRM----------------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIR  253 (282)
Q Consensus       196 fDlV~id~~~~~----------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~  253 (282)
                      ||+|+++.+...                      +..+++.+.++   |+|||.+++--.  .+.           ....
T Consensus       124 fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~--~~~-----------~~~~  187 (230)
T 3evz_A          124 FDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDH---LNPGGKVALYLP--DKE-----------KLLN  187 (230)
T ss_dssp             EEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGG---EEEEEEEEEEEE--SCH-----------HHHH
T ss_pred             eeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHH---hCCCeEEEEEec--ccH-----------hHHH
Confidence            999999855221                      25567777777   999999988311  110           1233


Q ss_pred             HHHHHhhhCCCeEEEEeecCCceE
Q 023411          254 NFNKNLMEDERVSISMVPIGDGMT  277 (282)
Q Consensus       254 ~~~~~~~~~~~~~~~~lp~~~Gl~  277 (282)
                      ++.+.+.+. +++...+.+..|..
T Consensus       188 ~~~~~l~~~-g~~~~~~~~~~g~~  210 (230)
T 3evz_A          188 VIKERGIKL-GYSVKDIKFKVGTR  210 (230)
T ss_dssp             HHHHHHHHT-TCEEEEEEECCCC-
T ss_pred             HHHHHHHHc-CCceEEEEecCCCe
Confidence            444444333 67777777766644

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.54  E-value=1.5e-14  Score=120.58  Aligned_cols=96  Identities=22%  Similarity=0.288  Sum_probs=58.2

Q ss_pred             CHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          104 SPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       104 ~~~~~~ll~~l~~~----~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      .+....++..+...    .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.+++++...+.  +++++++|
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d   87 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAAD   87 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHHH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcc
Confidence            44455555555443    5678999999999999999999875 67999999999999999999988777  69999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCC
Q 023411          180 AADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      +.+.++.....  .++||+|+++.+
T Consensus        88 ~~~~~~~~~~~--~~~fD~i~~npp  110 (215)
T 4dzr_A           88 GIEWLIERAER--GRPWHAIVSNPP  110 (215)
T ss_dssp             HHHHHHHHHHT--TCCBSEEEECCC
T ss_pred             hHhhhhhhhhc--cCcccEEEECCC
Confidence            98754431111  379999999754

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.53  E-value=6.3e-14  Score=122.55  Aligned_cols=119  Identities=16%  Similarity=0.233  Sum_probs=94.9

Q ss_pred             ccCHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          102 QVSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      ...+....++..+...  .++.+|||+|||+|..+..++...+ +.+|+++|+|+.+++.++++++..++. +++++++|
T Consensus        90 ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d  167 (276)
T 2b3t_A           90 IPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSD  167 (276)
T ss_dssp             CCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCS
T ss_pred             ccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcc
Confidence            3456666676666655  4677999999999999999998876 689999999999999999999999886 59999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCc----------------------------cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~----------------------------~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +.+..+       .++||+|+++.+.                            ..+..+++.+.++   |+|||++++.
T Consensus       168 ~~~~~~-------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~---LkpgG~l~~~  237 (276)
T 2b3t_A          168 WFSALA-------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA---LVSGGFLLLE  237 (276)
T ss_dssp             TTGGGT-------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG---EEEEEEEEEE
T ss_pred             hhhhcc-------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHh---cCCCCEEEEE
Confidence            976432       4689999998542                            1234455666666   9999999996


Q ss_pred             C
Q 023411          232 N  232 (282)
Q Consensus       232 d  232 (282)
                      .
T Consensus       238 ~  238 (276)
T 2b3t_A          238 H  238 (276)
T ss_dssp             C
T ss_pred             E
Confidence            3

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=126.87  Aligned_cols=114  Identities=18%  Similarity=0.304  Sum_probs=86.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC----------------------------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----------------------------  170 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~----------------------------  170 (282)
                      ++++|||||||+|..+..++..++ ..+|+|+|+++.+++.|++++...+..                            
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            578999999999999999999986 579999999999999999987765432                            


Q ss_pred             -----------------------------CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc---------ccHHHH
Q 023411          171 -----------------------------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---------MYQEYF  212 (282)
Q Consensus       171 -----------------------------~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~---------~~~~~l  212 (282)
                                                   ++++++++|+.+....+... ..++||+|++.....         ....++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~-~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l  203 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEA-QTPEYDVVLCLSLTKWVHLNWGDEGLKRMF  203 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTT-CCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccc-cCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence                                         57999999987533222111 158999999987642         345577


Q ss_pred             HHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          213 ELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       213 ~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +.+.++   |+|||+|++...-|..
T Consensus       204 ~~~~~~---LkpGG~lil~~~~~~~  225 (292)
T 3g07_A          204 RRIYRH---LRPGGILVLEPQPWSS  225 (292)
T ss_dssp             HHHHHH---EEEEEEEEEECCCHHH
T ss_pred             HHHHHH---hCCCcEEEEecCCchh
Confidence            777777   9999999998766553

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.53  E-value=9.6e-14  Score=129.45  Aligned_cols=125  Identities=17%  Similarity=0.218  Sum_probs=100.5

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+......++..++...++.+|||+|||+|..|..++..++..++|+++|+++.+++.++++++..|+.+ +.++++|+.
T Consensus        88 ~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~  166 (456)
T 3m4x_A           88 YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPA  166 (456)
T ss_dssp             EECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHH
T ss_pred             EEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHH
Confidence            4444555667777777888999999999999999999988756899999999999999999999999975 999999998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      +.....     .++||+|++|++...                         ....++.+.++   |||||+||.....+
T Consensus       167 ~l~~~~-----~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~---LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          167 ELVPHF-----SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKM---LKNKGQLIYSTCTF  237 (456)
T ss_dssp             HHHHHH-----TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEESCC
T ss_pred             Hhhhhc-----cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEEeec
Confidence            765444     589999999976210                         11455666666   99999999876543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.53  E-value=3.2e-14  Score=127.04  Aligned_cols=116  Identities=26%  Similarity=0.372  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      .+.....+...+...++.+|||||||+|..+..+++..+..++|+++|+++++++.|+++++..++.+ ++++++|+.+.
T Consensus        60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~  138 (317)
T 1dl5_A           60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYG  138 (317)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhc
Confidence            44445555555666788899999999999999999987645789999999999999999999998876 99999999764


Q ss_pred             HHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+.      .++||+|+++...++..   +.+.++   |||||++++..
T Consensus       139 ~~~------~~~fD~Iv~~~~~~~~~---~~~~~~---LkpgG~lvi~~  175 (317)
T 1dl5_A          139 VPE------FSPYDVIFVTVGVDEVP---ETWFTQ---LKEGGRVIVPI  175 (317)
T ss_dssp             CGG------GCCEEEEEECSBBSCCC---HHHHHH---EEEEEEEEEEB
T ss_pred             ccc------CCCeEEEEEcCCHHHHH---HHHHHh---cCCCcEEEEEE
Confidence            331      47899999998866554   466777   99999999964

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.53  E-value=3.6e-13  Score=121.03  Aligned_cols=109  Identities=15%  Similarity=0.166  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++.+|||+|||+|.+++.++..   +.+|+++|+|+.+++.|+++++.+++.+ +++++++|+.+.++.....  .++|
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~--~~~f  226 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR--GSTY  226 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH--TCCB
T ss_pred             CCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc--CCCc
Confidence            35679999999999999999984   3599999999999999999999999876 5999999998876543211  3689


Q ss_pred             eEEEEcCCc-c------------ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEK-R------------MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~-~------------~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+|++|.+. .            .+..+++.+.++   |+|||++++....
T Consensus       227 D~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~---LkpgG~lli~~~~  274 (332)
T 2igt_A          227 DIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREI---LSPKALGLVLTAY  274 (332)
T ss_dssp             SEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHT---BCTTCCEEEEEEC
T ss_pred             eEEEECCccccCCchHHHHHHHHHHHHHHHHHHHh---cCcCcEEEEEECC
Confidence            999998762 1            244566666677   9999998776554

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.53  E-value=1.4e-13  Score=121.15  Aligned_cols=117  Identities=15%  Similarity=0.368  Sum_probs=93.1

Q ss_pred             ccCHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          102 QVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~---~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ...+....++..+..   ..++.+|||+|||+|.+++.++.. + +.+|+++|+|+++++.|+++++.+++.++++++++
T Consensus       103 ipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~  180 (284)
T 1nv8_A          103 VPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG  180 (284)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES
T ss_pred             ecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            345566666655544   236679999999999999999998 5 78999999999999999999999999888999999


Q ss_pred             chhhHHHHHHhCCCCCce---eEEEEcCCccc----------------------cHHHHHHHH-HhhcCCCCCcEEEEe
Q 023411          179 LAADSLKALILNGEASSY---DFAFVDAEKRM----------------------YQEYFELLL-QLLLQIRVGGIIVID  231 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~f---DlV~id~~~~~----------------------~~~~l~~~~-~~~~~LkpgG~lv~d  231 (282)
                      |+.+.+        .++|   |+|+++.+...                      -..+++.+. +.   |+|||++++.
T Consensus       181 D~~~~~--------~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~---l~pgG~l~~e  248 (284)
T 1nv8_A          181 EFLEPF--------KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRY---DTSGKIVLME  248 (284)
T ss_dssp             STTGGG--------GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHC---CCTTCEEEEE
T ss_pred             cchhhc--------ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhc---CCCCCEEEEE
Confidence            998743        2468   99999854211                      114566776 77   9999999985

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.53  E-value=4.9e-15  Score=126.68  Aligned_cols=113  Identities=12%  Similarity=0.080  Sum_probs=87.5

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      ++..+....++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++++..++.++++++++|+.+..+    
T Consensus        69 l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  141 (241)
T 3gdh_A           69 IAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS----  141 (241)
T ss_dssp             HHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG----
T ss_pred             HHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc----
Confidence            3344444557889999999999999999985   479999999999999999999999987679999999977542    


Q ss_pred             CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                         .++||+|+++.+.......-..+..+.++|+|||+++++.
T Consensus       142 ---~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          142 ---FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             ---GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             ---cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence               5799999999775443221112223344499999987764

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=3.6e-14  Score=124.09  Aligned_cols=108  Identities=9%  Similarity=0.089  Sum_probs=91.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +....++.+|||+|||+|.+++.+++..+ .++|+++|+++.+++.|+++++.+++.+ ++++++|+.+. +.      .
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~-~~------~  184 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDV-EL------K  184 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGC-CC------T
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHc-Cc------c
Confidence            33455778999999999999999999875 6799999999999999999999999875 88999999875 32      3


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ++||+|++|.+. ....++..+.+.   |+|||++++....
T Consensus       185 ~~~D~Vi~d~p~-~~~~~l~~~~~~---LkpgG~l~~s~~~  221 (272)
T 3a27_A          185 DVADRVIMGYVH-KTHKFLDKTFEF---LKDRGVIHYHETV  221 (272)
T ss_dssp             TCEEEEEECCCS-SGGGGHHHHHHH---EEEEEEEEEEEEE
T ss_pred             CCceEEEECCcc-cHHHHHHHHHHH---cCCCCEEEEEEcC
Confidence            689999999875 556678888888   9999999987654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.52  E-value=4.2e-14  Score=124.54  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=92.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|..+..+++..  +.+|+++|+++.+++.++++....++.++++++++|+.+.. .     .+++
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~~~  150 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-C-----EDNS  150 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-S-----CTTC
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-C-----CCCC
Confidence            44577899999999999999999875  36999999999999999999999999888999999987631 1     1478


Q ss_pred             eeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          196 YDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       196 fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ||+|++.....   +...+++.+.++   |||||++++.+.....
T Consensus       151 fD~v~~~~~l~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~~~  192 (297)
T 2o57_A          151 YDFIWSQDAFLHSPDKLKVFQECARV---LKPRGVMAITDPMKED  192 (297)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEEEECT
T ss_pred             EeEEEecchhhhcCCHHHHHHHHHHH---cCCCeEEEEEEeccCC
Confidence            99999876643   356678888888   9999999998775543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.52  E-value=4.8e-14  Score=117.47  Aligned_cols=100  Identities=11%  Similarity=0.151  Sum_probs=86.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++.+ ++++++|+.+..+       .++||+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~-------~~~~D~  135 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS-------EPPFDG  135 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC-------CSCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCc-------cCCcCE
Confidence            478999999999999999999876 6899999999999999999999988876 9999999976431       478999


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |++... .+...+++.+.++   |+|||++++.
T Consensus       136 i~~~~~-~~~~~~l~~~~~~---L~~gG~l~~~  164 (207)
T 1jsx_A          136 VISRAF-ASLNDMVSWCHHL---PGEQGRFYAL  164 (207)
T ss_dssp             EECSCS-SSHHHHHHHHTTS---EEEEEEEEEE
T ss_pred             EEEecc-CCHHHHHHHHHHh---cCCCcEEEEE
Confidence            997654 5566777877777   9999999986

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.52  E-value=3.8e-14  Score=124.17  Aligned_cols=104  Identities=21%  Similarity=0.310  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..+..++..   +.+|+++|+++.+++.+++++...++..+++++++|+.+..+..     .++||+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~fD~  139 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL-----ETPVDL  139 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC-----SSCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc-----CCCceE
Confidence            3569999999999999999986   47999999999999999999999888778999999997654222     589999


Q ss_pred             EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |++.....   +...+++.+.++   |+|||++++...
T Consensus       140 v~~~~~l~~~~~~~~~l~~~~~~---LkpgG~l~~~~~  174 (285)
T 4htf_A          140 ILFHAVLEWVADPRSVLQTLWSV---LRPGGVLSLMFY  174 (285)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHT---EEEEEEEEEEEE
T ss_pred             EEECchhhcccCHHHHHHHHHHH---cCCCeEEEEEEe
Confidence            99987744   345677777777   999999998754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.52  E-value=3.9e-13  Score=116.32  Aligned_cols=102  Identities=16%  Similarity=0.248  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++..+++.  ++++++|..+.++       .++||
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~---g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~-------~~~fD  186 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP-------FGPFD  186 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG-------GCCEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc-------CCCCC
Confidence            46789999999999999998874   249999999999999999999988876  8999999876422       47899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|+++...+.....+..+.++   |+|||++++.++.
T Consensus       187 ~Vv~n~~~~~~~~~l~~~~~~---LkpgG~lils~~~  220 (254)
T 2nxc_A          187 LLVANLYAELHAALAPRYREA---LVPGGRALLTGIL  220 (254)
T ss_dssp             EEEEECCHHHHHHHHHHHHHH---EEEEEEEEEEEEE
T ss_pred             EEEECCcHHHHHHHHHHHHHH---cCCCCEEEEEeec
Confidence            999987766677788888888   9999999997654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.52  E-value=1.1e-13  Score=117.23  Aligned_cols=120  Identities=20%  Similarity=0.257  Sum_probs=91.6

Q ss_pred             CHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHHHCC----CCCEEEEEecCccHHHHHHHHHHHhCC----CCcE
Q 023411          104 SPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYERAGV----SHKV  173 (282)
Q Consensus       104 ~~~~~~ll~~l~--~~~~~~~VLEIG~G~G~~t~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~v  173 (282)
                      .+.....+...+  ...++.+|||||||+|+.+..+++...    +.++|+++|+++++++.++++++..++    .+++
T Consensus        63 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  142 (227)
T 2pbf_A           63 APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF  142 (227)
T ss_dssp             CHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE
Confidence            344443433333  356778999999999999999999874    467999999999999999999998874    3469


Q ss_pred             EEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       174 ~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +++++|+.+..+....  ..++||+|+++...++.   ++.+.++   |+|||++++.
T Consensus       143 ~~~~~d~~~~~~~~~~--~~~~fD~I~~~~~~~~~---~~~~~~~---LkpgG~lv~~  192 (227)
T 2pbf_A          143 KIIHKNIYQVNEEEKK--ELGLFDAIHVGASASEL---PEILVDL---LAENGKLIIP  192 (227)
T ss_dssp             EEEECCGGGCCHHHHH--HHCCEEEEEECSBBSSC---CHHHHHH---EEEEEEEEEE
T ss_pred             EEEECChHhcccccCc--cCCCcCEEEECCchHHH---HHHHHHh---cCCCcEEEEE
Confidence            9999999774310000  03789999999876654   4677788   9999999885

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.52  E-value=2.4e-14  Score=125.73  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=89.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|.++..+++.+|.+++|+++|+++.+++.+++++...+.  +++++++|+.+...       .++
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~   89 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL-------NDK   89 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC-------SSC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc-------CCC
Confidence            445788999999999999999999887568999999999999999999987654  69999999976421       468


Q ss_pred             eeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          196 YDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       196 fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      ||+|++.....   +....++.+.++   |+|||++++.+..|
T Consensus        90 fD~v~~~~~l~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~  129 (284)
T 3gu3_A           90 YDIAICHAFLLHMTTPETMLQKMIHS---VKKGGKIICFEPHW  129 (284)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHT---EEEEEEEEEEECCH
T ss_pred             eeEEEECChhhcCCCHHHHHHHHHHH---cCCCCEEEEEecch
Confidence            99999987643   346677777777   99999999877664

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.52  E-value=5.3e-14  Score=118.02  Aligned_cols=115  Identities=20%  Similarity=0.323  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      .+.....+...+...++.+|||||||+|..+..+++..++.++|+++|+++++++.+++++...++.+ ++++++|..+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~  140 (215)
T 2yxe_A           62 AIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLG  140 (215)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGC
T ss_pred             cHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccC
Confidence            44555555555666778899999999999999999987445899999999999999999999888765 99999998653


Q ss_pred             HHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+.      .++||+|++....++..   +.+.++   |+|||.+++.
T Consensus       141 ~~~------~~~fD~v~~~~~~~~~~---~~~~~~---L~pgG~lv~~  176 (215)
T 2yxe_A          141 YEP------LAPYDRIYTTAAGPKIP---EPLIRQ---LKDGGKLLMP  176 (215)
T ss_dssp             CGG------GCCEEEEEESSBBSSCC---HHHHHT---EEEEEEEEEE
T ss_pred             CCC------CCCeeEEEECCchHHHH---HHHHHH---cCCCcEEEEE
Confidence            321      36899999998766554   466777   9999999885

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.52  E-value=9.6e-14  Score=122.57  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++.+|||||||+|..+..+++.+++..+|+++|+++.+++.++++++.. +...+++++++|+.+...........++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            36779999999999999999987744789999999999999999999886 55568999999997642110000002799


Q ss_pred             eEEEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKR--MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |+|++....+  +...+++.+.++   |+|||++++
T Consensus       115 D~V~~~~~l~~~~~~~~l~~~~~~---LkpgG~l~i  147 (299)
T 3g5t_A          115 DMITAVECAHWFDFEKFQRSAYAN---LRKDGTIAI  147 (299)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHH---EEEEEEEEE
T ss_pred             eEEeHhhHHHHhCHHHHHHHHHHh---cCCCcEEEE
Confidence            9999876533  456678888888   999999988

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.52  E-value=7.3e-14  Score=125.59  Aligned_cols=121  Identities=16%  Similarity=0.238  Sum_probs=92.8

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC----------CCC
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG----------VSH  171 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g----------~~~  171 (282)
                      ...+.....+...+...++.+|||+|||+|+.+..+++..++.++|+++|+++.+++.|++++...+          ...
T Consensus        88 ~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~  167 (336)
T 2b25_A           88 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  167 (336)
T ss_dssp             CCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             ccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC
Confidence            4566656666666677888999999999999999999986546899999999999999999998643          235


Q ss_pred             cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +++++++|+.+....+.    .++||+|+++.....  ..++.+.++   |+|||.+++-
T Consensus       168 ~v~~~~~d~~~~~~~~~----~~~fD~V~~~~~~~~--~~l~~~~~~---LkpgG~lv~~  218 (336)
T 2b25_A          168 NVDFIHKDISGATEDIK----SLTFDAVALDMLNPH--VTLPVFYPH---LKHGGVCAVY  218 (336)
T ss_dssp             CEEEEESCTTCCC-----------EEEEEECSSSTT--TTHHHHGGG---EEEEEEEEEE
T ss_pred             ceEEEECChHHcccccC----CCCeeEEEECCCCHH--HHHHHHHHh---cCCCcEEEEE
Confidence            79999999977532221    468999999865332  257778787   9999999874

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.52  E-value=2.6e-13  Score=111.44  Aligned_cols=157  Identities=11%  Similarity=0.043  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          105 PDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       105 ~~~~~ll~~l~~-~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      |....+...... ..++.+|||+|||+|..++.++...| +.+|+++|+|+.+++.+++++..+|..+++++  +|..+.
T Consensus        34 p~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~  110 (200)
T 3fzg_A           34 ATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD  110 (200)
T ss_dssp             GGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH
T ss_pred             HhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc
Confidence            334444444333 25688999999999999999988766 67999999999999999999999999876777  555443


Q ss_pred             HHHHHhCCCCCceeEEEEcCCccccHH---HHHHHHHhhcCCCCCcEEEEeCCC-CCCc-ccCCcCCChhhHHHHHHHHH
Q 023411          184 LKALILNGEASSYDFAFVDAEKRMYQE---YFELLLQLLLQIRVGGIIVIDNVL-WHGK-VADQMVNDAKTISIRNFNKN  258 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~~~~~---~l~~~~~~~~~LkpgG~lv~dd~~-~~g~-~~~~~~~~~~~~~~~~~~~~  258 (282)
                      .+       .++||+|+.....+...+   .+..+.+.   |+|||++|--+.. ..|. ..-   ....   -..|.+.
T Consensus       111 ~~-------~~~~DvVLa~k~LHlL~~~~~al~~v~~~---L~pggvfISfptksl~Gr~~gm---~~~Y---~~~~~~~  174 (200)
T 3fzg_A          111 VY-------KGTYDVVFLLKMLPVLKQQDVNILDFLQL---FHTQNFVISFPIKSLSGKEKGM---EENY---QLWFESF  174 (200)
T ss_dssp             HT-------TSEEEEEEEETCHHHHHHTTCCHHHHHHT---CEEEEEEEEEECCCCC--CTTC---CCCH---HHHHHHH
T ss_pred             CC-------CCCcChhhHhhHHHhhhhhHHHHHHHHHH---hCCCCEEEEeChHHhcCCCcch---hhhH---HHHHHHh
Confidence            22       689999998776444322   23355566   9999999887632 1121 111   1111   1233443


Q ss_pred             hhhCCCeEEEEeecCCceEEEEE
Q 023411          259 LMEDERVSISMVPIGDGMTICQK  281 (282)
Q Consensus       259 ~~~~~~~~~~~lp~~~Gl~~~~k  281 (282)
                      + ....+.+-.+-+++=+....+
T Consensus       175 ~-~~~~~~~~~~~~~nEl~y~~~  196 (200)
T 3fzg_A          175 T-KGWIKILDSKVIGNELVYITS  196 (200)
T ss_dssp             T-TTTSCEEEEEEETTEEEEEEC
T ss_pred             c-cCcceeeeeeeeCceEEEEEe
Confidence            4 444555566667766665554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.52  E-value=6.5e-14  Score=124.53  Aligned_cols=104  Identities=20%  Similarity=0.188  Sum_probs=86.0

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      .+|||||||+|..+.++++..+ +.++++||+++.+++.|++++.... ..+++++++|+.+.+....    .++||+||
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~----~~~fDvIi  164 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFT----PASRDVII  164 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCC----TTCEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhcc----CCCCCEEE
Confidence            3999999999999999999876 6799999999999999999886432 4579999999988765431    47899999


Q ss_pred             EcCCcc-----c--cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          201 VDAEKR-----M--YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       201 id~~~~-----~--~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|....     +  ...+++.+.++   |+|||++++...
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~---LkpgGvlv~~~~  201 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRG---LAPGGLYVANCG  201 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHh---cCCCcEEEEEec
Confidence            986422     1  36789999999   999999998653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.52  E-value=1.1e-13  Score=119.11  Aligned_cols=118  Identities=19%  Similarity=0.221  Sum_probs=96.4

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEEcch
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLA  180 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~  180 (282)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++++++.++++++.. | .++++++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~  157 (258)
T 2pwy_A           79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKL  157 (258)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCG
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECch
Confidence            455555566666667778899999999999999999998654789999999999999999999988 7 45799999999


Q ss_pred             hhH-HHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          181 ADS-LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       181 ~~~-l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+. ++       .++||+|+++..  .....++.+.++   |+|||.+++..
T Consensus       158 ~~~~~~-------~~~~D~v~~~~~--~~~~~l~~~~~~---L~~gG~l~~~~  198 (258)
T 2pwy_A          158 EEAELE-------EAAYDGVALDLM--EPWKVLEKAALA---LKPDRFLVAYL  198 (258)
T ss_dssp             GGCCCC-------TTCEEEEEEESS--CGGGGHHHHHHH---EEEEEEEEEEE
T ss_pred             hhcCCC-------CCCcCEEEECCc--CHHHHHHHHHHh---CCCCCEEEEEe
Confidence            764 21       468999999754  333568888888   99999998854

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.52  E-value=9.5e-14  Score=121.40  Aligned_cols=119  Identities=21%  Similarity=0.310  Sum_probs=99.0

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++++++.++++++..++.++++++++|+.
T Consensus        95 ~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  174 (277)
T 1o54_A           95 IVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS  174 (277)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred             ccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence            45566666666777777889999999999999999999865578999999999999999999999888678999999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +.++       .++||+|+++..  ....+++.+.++   |+|||.+++..
T Consensus       175 ~~~~-------~~~~D~V~~~~~--~~~~~l~~~~~~---L~pgG~l~~~~  213 (277)
T 1o54_A          175 EGFD-------EKDVDALFLDVP--DPWNYIDKCWEA---LKGGGRFATVC  213 (277)
T ss_dssp             GCCS-------CCSEEEEEECCS--CGGGTHHHHHHH---EEEEEEEEEEE
T ss_pred             Hccc-------CCccCEEEECCc--CHHHHHHHHHHH---cCCCCEEEEEe
Confidence            6521       468999999764  233568888888   99999999864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.51  E-value=2.1e-14  Score=126.03  Aligned_cols=105  Identities=17%  Similarity=0.119  Sum_probs=90.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|.+++.+++..+  .+|+++|+++.+++.|+++++.+++.++++++++|+.+...       .++||
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-------~~~fD  194 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIAD  194 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-------cCCcc
Confidence            3578999999999999999999754  28999999999999999999999998889999999987543       47899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      +|+++.+.. ...+++.+.++   |+|||++++.....
T Consensus       195 ~Vi~~~p~~-~~~~l~~~~~~---LkpgG~l~~~~~~~  228 (278)
T 2frn_A          195 RILMGYVVR-THEFIPKALSI---AKDGAIIHYHNTVP  228 (278)
T ss_dssp             EEEECCCSS-GGGGHHHHHHH---EEEEEEEEEEEEEE
T ss_pred             EEEECCchh-HHHHHHHHHHH---CCCCeEEEEEEeec
Confidence            999987743 35678888888   99999999976643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.51  E-value=3.3e-13  Score=122.93  Aligned_cols=150  Identities=17%  Similarity=0.243  Sum_probs=99.9

Q ss_pred             cCCCEEEEEccc------ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHh
Q 023411          118 LGAQRCIEVGVY------TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALIL  189 (282)
Q Consensus       118 ~~~~~VLEIG~G------~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~  189 (282)
                      .++.+|||||||      +|..++.+++...++++|+++|+++.+.         . ...+++++++|+.+..  ..+..
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~  284 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIAR  284 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhc
Confidence            367899999999      7777777776542378999999999972         1 2357999999997632  11111


Q ss_pred             CCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCC---C---CCcccCCcCCChhhHHHHHHHHHhhh
Q 023411          190 NGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVL---W---HGKVADQMVNDAKTISIRNFNKNLME  261 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~---~---~g~~~~~~~~~~~~~~~~~~~~~~~~  261 (282)
                      .  .++||+||++...  .+....++.+.++   |||||++++.|+.   |   .|...+......-...++++.+.+..
T Consensus       285 ~--d~sFDlVisdgsH~~~d~~~aL~el~rv---LKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~  359 (419)
T 3sso_A          285 R--YGPFDIVIDDGSHINAHVRTSFAALFPH---VRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQH  359 (419)
T ss_dssp             H--HCCEEEEEECSCCCHHHHHHHHHHHGGG---EEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTG
T ss_pred             c--cCCccEEEECCcccchhHHHHHHHHHHh---cCCCeEEEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcc
Confidence            0  3789999998763  2344566666666   9999999999997   2   33221111112223456666666532


Q ss_pred             C---------CCe---EEEEeecCCceEEEEEC
Q 023411          262 D---------ERV---SISMVPIGDGMTICQKR  282 (282)
Q Consensus       262 ~---------~~~---~~~~lp~~~Gl~~~~k~  282 (282)
                      .         |.+   .+.-+.+-+++.+..|+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg  392 (419)
T 3sso_A          360 QELPSDPNRSPGYVDRNIVGLHVYHNVAFVEKG  392 (419)
T ss_dssp             GGSCCCTTCCCCHHHHHEEEEEEETTEEEEEES
T ss_pred             cccCCCcCCCCCccccceeEEEecCcEEEEEec
Confidence            1         222   25678899999998884

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.51  E-value=5.4e-14  Score=117.56  Aligned_cols=116  Identities=13%  Similarity=-0.004  Sum_probs=83.2

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC-----------CCC
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-----------VSH  171 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-----------~~~  171 (282)
                      +++...+++..+ ...++.+|||+|||+|..+.++++.   +.+|+|+|+|+.+++.|+++.....           ...
T Consensus         7 ~~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~   82 (203)
T 1pjz_A            7 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   82 (203)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             CCHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCC
Confidence            344444444332 2346789999999999999999986   4699999999999999998754210           124


Q ss_pred             cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +++++++|+.+.....     .++||+|++.....     ....+++.+.++   |||||.+++
T Consensus        83 ~v~~~~~d~~~l~~~~-----~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~---LkpgG~~~l  138 (203)
T 1pjz_A           83 GIEIWCGDFFALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEAL---MPQACSGLL  138 (203)
T ss_dssp             SSEEEEECCSSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHH---SCSEEEEEE
T ss_pred             ccEEEECccccCCccc-----CCCEEEEEECcchhhCCHHHHHHHHHHHHHH---cCCCcEEEE
Confidence            6999999997753321     16899999765432     234467788888   999998433

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.51  E-value=2.8e-14  Score=121.81  Aligned_cols=106  Identities=18%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..+++..  ..+|+++|+|+.+++.|+++.+..+  .+++++++|+.+..+.+    .+++||
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~----~~~~fD  130 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL----PDGHFD  130 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS----CTTCEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhccc----CCCceE
Confidence            356799999999999999997643  2489999999999999999887665  46999999997653222    157999


Q ss_pred             EEEEcCCc-----cc---cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEK-----RM---YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~-----~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|++|...     .+   ...+++.+.++   |||||++++-+..
T Consensus       131 ~V~~d~~~~~~~~~~~~~~~~~l~~~~r~---LkpgG~l~~~~~~  172 (236)
T 1zx0_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRL---LKPGGVLTYCNLT  172 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHH---EEEEEEEEECCHH
T ss_pred             EEEECCcccchhhhhhhhHHHHHHHHHHh---cCCCeEEEEEecC
Confidence            99994221     11   22457778888   9999999986654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.51  E-value=5e-14  Score=119.54  Aligned_cols=112  Identities=12%  Similarity=0.122  Sum_probs=89.7

Q ss_pred             HHHHhh-cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          112 AMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       112 ~~l~~~-~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      ..+... .++.+|+|||||+|+.++.++...+ ..+|+++|+++.+++.|++|++.+|+.++++++++|..+.++.    
T Consensus         7 ~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~----   81 (225)
T 3kr9_A            7 ELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE----   81 (225)
T ss_dssp             HHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG----
T ss_pred             HHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc----
Confidence            344443 3556999999999999999998754 5789999999999999999999999999999999999765431    


Q ss_pred             CCCCceeEEEEcCC-ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          191 GEASSYDFAFVDAE-KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                        .++||+|++.+. ..-....++.....   |+++|.+|+...
T Consensus        82 --~~~~D~IviaG~Gg~~i~~Il~~~~~~---L~~~~~lVlq~~  120 (225)
T 3kr9_A           82 --TDQVSVITIAGMGGRLIARILEEGLGK---LANVERLILQPN  120 (225)
T ss_dssp             --GGCCCEEEEEEECHHHHHHHHHHTGGG---CTTCCEEEEEES
T ss_pred             --CcCCCEEEEcCCChHHHHHHHHHHHHH---hCCCCEEEEECC
Confidence              136999887543 33356677777777   999999999755

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.51  E-value=1.4e-14  Score=128.38  Aligned_cols=110  Identities=15%  Similarity=0.085  Sum_probs=90.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..++....++++|+++|+++.+++.+++++...++.++++++++|+.+...       .++|
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~f  188 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT-------REGY  188 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC-------CSCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc-------cCCe
Confidence            467889999999999999998633334789999999999999999999999988889999999976421       4799


Q ss_pred             eEEEEcCCccc------cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          197 DFAFVDAEKRM------YQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       197 DlV~id~~~~~------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      |+|++.....+      ...+++.+.++   |+|||++++.+...+
T Consensus       189 D~v~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~~~  231 (305)
T 3ocj_A          189 DLLTSNGLNIYEPDDARVTELYRRFWQA---LKPGGALVTSFLTPP  231 (305)
T ss_dssp             EEEECCSSGGGCCCHHHHHHHHHHHHHH---EEEEEEEEEECCCCC
T ss_pred             EEEEECChhhhcCCHHHHHHHHHHHHHh---cCCCeEEEEEecCCC
Confidence            99999765332      22367888888   999999999886543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.50  E-value=6.6e-14  Score=120.91  Aligned_cols=112  Identities=16%  Similarity=0.236  Sum_probs=89.3

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +...+...++.+|||||||+|.++..+++..   .+|+++|+++.+++.+++++...++. +++++++|+.+. + +   
T Consensus        29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~-~---   99 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F---   99 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S---
T ss_pred             HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C-C---
Confidence            3334455678899999999999999999874   49999999999999999999988876 599999998653 2 1   


Q ss_pred             CCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          191 GEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                       .+++||+|++....+   +....+..+.++   |+|||.+++.+...
T Consensus       100 -~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~---LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          100 -TDERFHIVTCRIAAHHFPNPASFVSEAYRV---LKKGGQLLLVDNSA  143 (260)
T ss_dssp             -CTTCEEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEEEB
T ss_pred             -CCCCEEEEEEhhhhHhcCCHHHHHHHHHHH---cCCCCEEEEEEcCC
Confidence             147999999986643   456678888888   99999999965543

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.50  E-value=9.9e-14  Score=118.77  Aligned_cols=105  Identities=11%  Similarity=0.159  Sum_probs=83.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH------hCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~------~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      +..+|||||||+|.++..+++..| +..|+|||+++.+++.|+++++.      .+.. +++++++|+.+.++....   
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~~l~~~~~---  120 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNAMKHLPNFFY---  120 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCTTTCHHHHCC---
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcHHHhhhhhCC---
Confidence            556899999999999999999876 68999999999999999988764      3443 599999999875543221   


Q ss_pred             CCceeEEEEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++||.|++......           ...+++.+.++   |+|||.|++.
T Consensus       121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~---LkpGG~l~~~  167 (235)
T 3ckk_A          121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYV---LRVGGLVYTI  167 (235)
T ss_dssp             TTCEEEEEEESCC-----------CCCHHHHHHHHHH---EEEEEEEEEE
T ss_pred             CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHH---CCCCCEEEEE
Confidence            578999988643111           24688889898   9999999874

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.50  E-value=1.2e-13  Score=118.00  Aligned_cols=118  Identities=14%  Similarity=0.236  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       106 ~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      .....+.......++.+|||||||+|..+..++...   .+|+++|+++.+++.+++++...++. +++++++|+.+. +
T Consensus         8 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~   82 (239)
T 1xxl_A            8 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P   82 (239)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C
T ss_pred             CCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C
Confidence            334445566667788999999999999999999864   59999999999999999999988876 599999998653 2


Q ss_pred             HHHhCCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          186 ALILNGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      .     .+++||+|++.....   +....+..+.++   |+|||.+++.+...+
T Consensus        83 ~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~~  128 (239)
T 1xxl_A           83 F-----PDDSFDIITCRYAAHHFSDVRKAVREVARV---LKQDGRFLLVDHYAP  128 (239)
T ss_dssp             S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEECBC
T ss_pred             C-----CCCcEEEEEECCchhhccCHHHHHHHHHHH---cCCCcEEEEEEcCCC
Confidence            1     147899999986643   456677888888   999999999765543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.50  E-value=3e-14  Score=121.00  Aligned_cols=107  Identities=16%  Similarity=0.202  Sum_probs=87.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+++.+++.+++++...+   +++++++|+.+...       .++|
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~-------~~~f  110 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF-------EEKY  110 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC-------CSCE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC-------CCCc
Confidence            34678999999999999999999886 7899999999999999999876544   69999999976421       3799


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++....++.     ...++.+.++   |+|||.+++.+...+.
T Consensus       111 D~v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~~~  153 (234)
T 3dtn_A          111 DMVVSALSIHHLEDEDKKELYKRSYSI---LKESGIFINADLVHGE  153 (234)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEECBCS
T ss_pred             eEEEEeCccccCCHHHHHHHHHHHHHh---cCCCcEEEEEEecCCC
Confidence            999998774443     2367788888   9999999997765443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.50  E-value=1.1e-13  Score=120.93  Aligned_cols=122  Identities=21%  Similarity=0.272  Sum_probs=98.1

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-C-CCCcEEEEE
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-G-VSHKVKIKH  177 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g-~~~~v~~~~  177 (282)
                      ...+.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++++++.++++++.. | +.+++++++
T Consensus        80 ~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~  159 (280)
T 1i9g_A           80 PQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV  159 (280)
T ss_dssp             SCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred             ceeecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence            33456666666666677778889999999999999999997654689999999999999999999887 5 455799999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +|+.+..  +    ..++||+|+++..  +....++.+.++   |+|||.+++..
T Consensus       160 ~d~~~~~--~----~~~~~D~v~~~~~--~~~~~l~~~~~~---L~pgG~l~~~~  203 (280)
T 1i9g_A          160 SDLADSE--L----PDGSVDRAVLDML--APWEVLDAVSRL---LVAGGVLMVYV  203 (280)
T ss_dssp             SCGGGCC--C----CTTCEEEEEEESS--CGGGGHHHHHHH---EEEEEEEEEEE
T ss_pred             CchHhcC--C----CCCceeEEEECCc--CHHHHHHHHHHh---CCCCCEEEEEe
Confidence            9997641  1    1468999999765  333568888888   99999999854

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.50  E-value=3.5e-13  Score=124.76  Aligned_cols=125  Identities=18%  Similarity=0.161  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHH-------HHHHHHhCCC-CcEEEE
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA-------KKYYERAGVS-HKVKIK  176 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a-------~~~~~~~g~~-~~v~~~  176 (282)
                      +.....+...+...++.+|||||||+|..++.++...+ ..+|+|||+++.+++.|       ++++...|+. .+++++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            44444444555667888999999999999999998765 46899999999999988       8888888854 579999


Q ss_pred             EcchhhH---HHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          177 HGLAADS---LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       177 ~gd~~~~---l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ++|....   ++..     .++||+|++....  .+....+..+.+.   |+|||.|++.+.+.+..
T Consensus       307 ~gD~~~~~~~~~~~-----~~~FDvIvvn~~l~~~d~~~~L~el~r~---LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          307 LKKSFVDNNRVAEL-----IPQCDVILVNNFLFDEDLNKKVEKILQT---AKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             ESSCSTTCHHHHHH-----GGGCSEEEECCTTCCHHHHHHHHHHHTT---CCTTCEEEESSCSSCTT
T ss_pred             EcCccccccccccc-----cCCCCEEEEeCccccccHHHHHHHHHHh---CCCCeEEEEeeccCCcc
Confidence            9865421   2222     3689999986442  3344455666665   99999999988765554

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.50  E-value=3.9e-13  Score=118.21  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--C-CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~-~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      .++++|||||||+|..+..+++..+ ..+++++|+++.+++.+++++...+  + ..+++++++|+.+.++..     .+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----~~  150 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-----TN  150 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-----CS
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC-----CC
Confidence            4678999999999999999997644 6799999999999999999886532  2 357999999998876543     57


Q ss_pred             ceeEEEEcCCcc-----c--cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 SYDFAFVDAEKR-----M--YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~~-----~--~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +||+|++|....     .  ...+++.+.++   |+|||++++..
T Consensus       151 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~---L~pgG~lv~~~  192 (283)
T 2i7c_A          151 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNA---LKPNGYCVAQC  192 (283)
T ss_dssp             CEEEEEEECCCTTTGGGGGSSHHHHHHHHHH---EEEEEEEEEEC
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHHh---cCCCcEEEEEC
Confidence            899999986421     1  16789999998   99999999974

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.50  E-value=6.2e-14  Score=122.06  Aligned_cols=108  Identities=22%  Similarity=0.244  Sum_probs=90.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..| +.+|+++|+++.+++.+++++...++. +++++.+|+.+...      ..++|
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~------~~~~f  106 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPF------EDSSF  106 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCS------CTTCE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCC------CCCCe
Confidence            35778999999999999999999875 689999999999999999999998876 59999999976421      15799


Q ss_pred             eEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          197 DFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       197 DlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |+|++.....   +...+++.+.++   |+|||++++.+..+
T Consensus       107 D~v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          107 DHIFVCFVLEHLQSPEEALKSLKKV---LKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEECG
T ss_pred             eEEEEechhhhcCCHHHHHHHHHHH---cCCCcEEEEEEcCC
Confidence            9999987633   345678888888   99999999976554

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.49  E-value=4.1e-13  Score=126.26  Aligned_cols=127  Identities=20%  Similarity=0.243  Sum_probs=101.2

Q ss_pred             CCccCHHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411          100 QMQVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (282)
                      ...+......++..++...  ++.+|||+|||+|..|..+++.++..++|+++|+++.+++.++++++..|+.+ +++++
T Consensus        96 ~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~  174 (479)
T 2frx_A           96 LFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTH  174 (479)
T ss_dssp             SEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEEC
T ss_pred             EEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEe
Confidence            3445556666666677666  88999999999999999999998756899999999999999999999999874 99999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +|+.+.....     .++||.|++|++...                         ....++.+.++   |||||+||+..
T Consensus       175 ~D~~~~~~~~-----~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~---LkpGG~LvysT  246 (479)
T 2frx_A          175 FDGRVFGAAV-----PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHA---LRPGGTLVYST  246 (479)
T ss_dssp             CCSTTHHHHS-----TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             CCHHHhhhhc-----cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHh---cCCCCEEEEec
Confidence            9997754323     478999999865210                         12456667777   99999999976


Q ss_pred             CCC
Q 023411          233 VLW  235 (282)
Q Consensus       233 ~~~  235 (282)
                      .-+
T Consensus       247 cs~  249 (479)
T 2frx_A          247 CTL  249 (479)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.49  E-value=6.2e-14  Score=124.66  Aligned_cols=110  Identities=11%  Similarity=0.139  Sum_probs=91.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..  +++|+++|+++++++.|+++++..++.++++++++|+.+..  .    ..++|
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~f  186 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--F----DKGAV  186 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C----CTTCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--C----CCCCE
Confidence            4567899999999999999999875  47999999999999999999999999888999999997532  1    14799


Q ss_pred             eEEEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKR--MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++....+  ....+++.+.++   |||||.+++.+.....
T Consensus       187 D~V~~~~~l~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~~~  226 (312)
T 3vc1_A          187 TASWNNESTMYVDLHDLFSEHSRF---LKVGGRYVTITGCWNP  226 (312)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHH---EEEEEEEEEEEEEECT
T ss_pred             eEEEECCchhhCCHHHHHHHHHHH---cCCCcEEEEEEccccc
Confidence            9999876533  356778888888   9999999987655444

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.49  E-value=6.1e-14  Score=119.60  Aligned_cols=106  Identities=13%  Similarity=0.115  Sum_probs=84.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      +.++.+|||+|||+|+.+..+++.++++|+|+++|+++++++.++++.+..   .++..+.+|..+... ..  ...+++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~-~~--~~~~~v  148 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEK-YR--HLVEGV  148 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGG-GT--TTCCCE
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccc-cc--cccceE
Confidence            568899999999999999999999877899999999999999998876643   358999988865311 10  115789


Q ss_pred             eEEEEcCCcc-ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKR-MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~-~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+||+|.... +....+..+.+.   |||||.+++.
T Consensus       149 DvVf~d~~~~~~~~~~l~~~~r~---LKpGG~lvI~  181 (233)
T 4df3_A          149 DGLYADVAQPEQAAIVVRNARFF---LRDGGYMLMA  181 (233)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEEEeccCChhHHHHHHHHHHh---ccCCCEEEEE
Confidence            9999987644 344577888888   9999999884

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.48  E-value=6e-14  Score=120.99  Aligned_cols=107  Identities=8%  Similarity=0.125  Sum_probs=85.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.++++....   .+++++++|+.+. +.     ..++|
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~~-----~~~~f  121 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-EF-----PENNF  121 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-CC-----CTTCE
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-CC-----CCCcE
Confidence            4567899999999999999999876  479999999999999999877543   5799999999764 11     15799


Q ss_pred             eEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++....++     ...+++.+.++   |+|||.+++.+...+.
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~---L~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKW---LKPTGTLLITDYCATE  164 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEEESC
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHH---cCCCCEEEEEEeccCC
Confidence            99999877544     34566777777   9999999998765443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.48  E-value=9.2e-14  Score=126.92  Aligned_cols=105  Identities=10%  Similarity=0.104  Sum_probs=86.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC--cEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--KVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~--~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++.+|||+|||+|.+++.+++..| +.+|+++|+++.+++.+++++..+++.+  +++++.+|..+.++       .
T Consensus       219 ~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~-------~  290 (375)
T 4dcm_A          219 PENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE-------P  290 (375)
T ss_dssp             CCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC-------T
T ss_pred             cccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC-------C
Confidence            334558999999999999999999876 6899999999999999999999998764  58889999976322       4


Q ss_pred             CceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++||+|+++.+.+.        ...+++.+.++   |+|||++++-
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~---LkpgG~l~iv  333 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC---LKINGELYIV  333 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHh---CCCCcEEEEE
Confidence            79999999876321        23567888888   9999999883

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.48  E-value=2.1e-13  Score=118.00  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=87.2

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH----------hC---
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER----------AG---  168 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~----------~g---  168 (282)
                      ...+....++..+....++.+|||+|||+|..+.+|++.   +.+|+|||+|+.+++.|++....          .+   
T Consensus        51 ~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~  127 (252)
T 2gb4_A           51 QGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKV  127 (252)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred             CCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccc
Confidence            455555555555444457789999999999999999985   46999999999999999775531          00   


Q ss_pred             ---CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          169 ---VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       169 ---~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                         ...+++++++|+.+.....     .++||+|+....     ......+++.+.++   |||||++++-
T Consensus       128 ~~~~~~~i~~~~~D~~~l~~~~-----~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~---LkpGG~l~l~  190 (252)
T 2gb4_A          128 FKSSSGSISLYCCSIFDLPRAN-----IGKFDRIWDRGALVAINPGDHDRYADIILSL---LRKEFQYLVA  190 (252)
T ss_dssp             EEETTSSEEEEESCTTTGGGGC-----CCCEEEEEESSSTTTSCGGGHHHHHHHHHHT---EEEEEEEEEE
T ss_pred             cccCCCceEEEECccccCCccc-----CCCEEEEEEhhhhhhCCHHHHHHHHHHHHHH---cCCCeEEEEE
Confidence               1246999999998753210     279999997543     22345678888888   9999998643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.48  E-value=2.8e-13  Score=115.58  Aligned_cols=106  Identities=12%  Similarity=0.065  Sum_probs=79.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|+.+..+++.+++.++|+++|+++.+++...+..+..   .++.++++|+......  .. ..++|
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~--~~-~~~~~  147 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSY--KS-VVENV  147 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGT--TT-TCCCE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhh--hc-cccce
Confidence            457789999999999999999998776899999999999876554444332   3599999998653110  00 04689


Q ss_pred             eEEEEcCCccccHHHH-HHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYF-ELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l-~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+||+|.........+ ..+.++   |||||.+++.
T Consensus       148 D~I~~d~a~~~~~~il~~~~~~~---LkpGG~lvis  180 (232)
T 3id6_C          148 DVLYVDIAQPDQTDIAIYNAKFF---LKVNGDMLLV  180 (232)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEEecCCChhHHHHHHHHHHHh---CCCCeEEEEE
Confidence            9999998765554444 445557   9999999985

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.48  E-value=9e-13  Score=128.81  Aligned_cols=157  Identities=10%  Similarity=0.095  Sum_probs=113.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh------CCCCcEEEEEcchh
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------GVSHKVKIKHGLAA  181 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g~~~~v~~~~gd~~  181 (282)
                      ...+...+...++.+|||||||+|..+..+++..++..+|+|+|+++.+++.|++++...      ++. +++++++|+.
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa~  788 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSIL  788 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCTT
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECchH
Confidence            333444555568899999999999999999987644579999999999999999977643      333 6999999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccH-----HHHHHHHHhhcCCCCCcEEEEeCCC------CCCc------------
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQ-----EYFELLLQLLLQIRVGGIIVIDNVL------WHGK------------  238 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~-----~~l~~~~~~~~~LkpgG~lv~dd~~------~~g~------------  238 (282)
                      +....      .++||+|++....++..     .+++.+.++   |||| .+++...-      +.+.            
T Consensus       789 dLp~~------d~sFDlVV~~eVLeHL~dp~l~~~L~eI~Rv---LKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~  858 (950)
T 3htx_A          789 EFDSR------LHDVDIGTCLEVIEHMEEDQACEFGEKVLSL---FHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEP  858 (950)
T ss_dssp             SCCTT------SCSCCEEEEESCGGGSCHHHHHHHHHHHHHT---TCCS-EEEEEECBGGGHHHHTCC------------
T ss_pred             hCCcc------cCCeeEEEEeCchhhCChHHHHHHHHHHHHH---cCCC-EEEEEecCchhhhhhhhccccccccccccc
Confidence            64221      58999999987765533     356666777   9999 66665432      2211            


Q ss_pred             ----ccCCcC-CChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023411          239 ----VADQMV-NDAKTISIRNFNKNLMEDERVSISMVPIGDG  275 (282)
Q Consensus       239 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~G  275 (282)
                          ...++. ..-....++.|.+.+.+..++.+...++|+|
T Consensus       859 ~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          859 QLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             ccccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence                000100 0112346778888888888999999999998

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.48  E-value=1.6e-13  Score=115.98  Aligned_cols=104  Identities=14%  Similarity=0.238  Sum_probs=84.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC----CCcEEEEEcchhhHHHHHHhCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ..++.+|||||||+|..+..+++..++.++|+++|+++.+++.+++++...+.    .++++++++|+.+....      
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc------
Confidence            45678999999999999999998865457999999999999999999988765    45699999998653221      


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .++||+|+++....+.   ++.+.++   |+|||++++.-
T Consensus       149 ~~~fD~i~~~~~~~~~---~~~~~~~---LkpgG~lv~~~  182 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPVV---PQALIDQ---LKPGGRLILPV  182 (226)
T ss_dssp             GCCEEEEEECSBBSSC---CHHHHHT---EEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHHH---HHHHHHh---cCCCcEEEEEE
Confidence            4689999999876554   3567777   99999999853

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.48  E-value=2.2e-13  Score=121.03  Aligned_cols=106  Identities=12%  Similarity=0.187  Sum_probs=84.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH---hCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++..   .....+++++.+|+.+.+....    .+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~----~~  168 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTP----DN  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSC----TT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhcc----CC
Confidence            4678999999999999999998643 57999999999999999998743   2234579999999987654211    47


Q ss_pred             ceeEEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +||+|++|.....       ...+++.+.++   |+|||++++.
T Consensus       169 ~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~---LkpgG~lv~~  209 (304)
T 3bwc_A          169 TYDVVIIDTTDPAGPASKLFGEAFYKDVLRI---LKPDGICCNQ  209 (304)
T ss_dssp             CEEEEEEECC---------CCHHHHHHHHHH---EEEEEEEEEE
T ss_pred             ceeEEEECCCCccccchhhhHHHHHHHHHHh---cCCCcEEEEe
Confidence            8999999875322       15788888888   9999999986

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.48  E-value=3.8e-13  Score=123.26  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=87.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++++|||+|||+|.+++.++...  ..+|+++|+++.+++.|+++++.+++.+ +++++++|+.+.++.....  ..+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~--~~~f  286 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH--HLTY  286 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT--TCCE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh--CCCc
Confidence            567899999999999999999842  2589999999999999999999999875 7999999999877655332  3589


Q ss_pred             eEEEEcCCcc-----c-------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          197 DFAFVDAEKR-----M-------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       197 DlV~id~~~~-----~-------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+|++|++.-     .       +..++..+.++   |+|||++++...
T Consensus       287 D~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~---L~pgG~l~~~~~  332 (385)
T 2b78_A          287 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI---LSENGLIIASTN  332 (385)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             cEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHh---cCCCcEEEEEeC
Confidence            9999987641     1       22344555566   999999998754

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.48  E-value=2.6e-13  Score=111.88  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=85.7

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ..+...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...++.+ ++++++|+.+...       
T Consensus        26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~-------   94 (199)
T 2xvm_A           26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTF-------   94 (199)
T ss_dssp             HHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCC-------
T ss_pred             HHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCC-------
Confidence            3344557789999999999999999986   4799999999999999999999888754 9999999876321       


Q ss_pred             CCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          193 ASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       193 ~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .++||+|++.....     ....+++.+.++   |+|||.+++-+
T Consensus        95 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~  136 (199)
T 2xvm_A           95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRC---TKPGGYNLIVA  136 (199)
T ss_dssp             CCCEEEEEEESCGGGSCGGGHHHHHHHHHHT---EEEEEEEEEEE
T ss_pred             CCCceEEEEcchhhhCCHHHHHHHHHHHHHh---cCCCeEEEEEE
Confidence            47899999886633     455677777777   99999976643

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.48  E-value=4e-13  Score=123.52  Aligned_cols=111  Identities=19%  Similarity=0.272  Sum_probs=91.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC-CCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++++|||+|||+|.+++.++...  ..+|+++|+++.+++.|+++++.+++ .++++++++|+.+.++.+...  ..
T Consensus       217 ~~~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~--~~  292 (396)
T 3c0k_A          217 RYVENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GE  292 (396)
T ss_dssp             HHCTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT--TC
T ss_pred             HhhCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc--CC
Confidence            33678899999999999999999852  36999999999999999999999998 657999999998877655322  36


Q ss_pred             ceeEEEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +||+|++|.+.            ..+..++..+.++   |+|||++++...
T Consensus       293 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~  340 (396)
T 3c0k_A          293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQL---LNEGGILLTFSC  340 (396)
T ss_dssp             CEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEeC
Confidence            89999999764            4456667777777   999999998654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.48  E-value=2.7e-13  Score=115.96  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=96.4

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.   ..+|+++|+++++++.++++....++.++++++.+|+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~  150 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFK  150 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTT
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChh
Confidence            345666667777777778899999999999999999987   47999999999999999999999888778999999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +...      ..++||+||++..  +....++.+.++   |+|||.+++..
T Consensus       151 ~~~~------~~~~~D~v~~~~~--~~~~~l~~~~~~---L~~gG~l~~~~  190 (248)
T 2yvl_A          151 DAEV------PEGIFHAAFVDVR--EPWHYLEKVHKS---LMEGAPVGFLL  190 (248)
T ss_dssp             TSCC------CTTCBSEEEECSS--CGGGGHHHHHHH---BCTTCEEEEEE
T ss_pred             hccc------CCCcccEEEECCc--CHHHHHHHHHHH---cCCCCEEEEEe
Confidence            6420      0468999999755  334567888888   99999998854

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.48  E-value=1.7e-13  Score=115.28  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=78.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++..+ +++|+|+|+|+.+++.+.+..+..   +++.++++|+.+.....  .. .++||
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~--~~-~~~fD  128 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS--GI-VEKVD  128 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT--TT-CCCEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc--cc-cccee
Confidence            4567999999999999999999887 789999999999887666655542   35899999886531100  00 37899


Q ss_pred             EEEEcCCccccH-HHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRMYQ-EYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~~~-~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|+++...+... .+++.+.++   |||||.+++.
T Consensus       129 ~V~~~~~~~~~~~~~l~~~~r~---LkpgG~l~i~  160 (210)
T 1nt2_A          129 LIYQDIAQKNQIEILKANAEFF---LKEKGEVVIM  160 (210)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEEeccChhHHHHHHHHHHHH---hCCCCEEEEE
Confidence            999986544322 347788888   9999999986

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.48  E-value=5e-14  Score=120.02  Aligned_cols=107  Identities=10%  Similarity=0.139  Sum_probs=84.0

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      ++..+....++.+|||||||+|..+..+++..   .+|+++|+++.+++.+++++..     +++++++|+.+..+    
T Consensus        33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~----  100 (250)
T 2p7i_A           33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQL----  100 (250)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCC----
T ss_pred             HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCc----
Confidence            34444445677899999999999999998764   4899999999999999987642     59999999976521    


Q ss_pred             CCCCCceeEEEEcCCccc---cHHHHHHHH-HhhcCCCCCcEEEEeCCC
Q 023411          190 NGEASSYDFAFVDAEKRM---YQEYFELLL-QLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~---~~~~l~~~~-~~~~~LkpgG~lv~dd~~  234 (282)
                         +++||+|++....++   ....++.+. ++   |||||.+++....
T Consensus       101 ---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~---LkpgG~l~i~~~~  143 (250)
T 2p7i_A          101 ---PRRYDNIVLTHVLEHIDDPVALLKRINDDW---LAEGGRLFLVCPN  143 (250)
T ss_dssp             ---SSCEEEEEEESCGGGCSSHHHHHHHHHHTT---EEEEEEEEEEEEC
T ss_pred             ---CCcccEEEEhhHHHhhcCHHHHHHHHHHHh---cCCCCEEEEEcCC
Confidence               578999999877544   445666666 66   9999999997643

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.48  E-value=2.9e-13  Score=117.62  Aligned_cols=116  Identities=12%  Similarity=0.093  Sum_probs=89.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCcc------HHHHHHHHHHHhCCCCcEEEEEcc-hhhH-HH
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR------SLEVAKKYYERAGVSHKVKIKHGL-AADS-LK  185 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~------~~~~a~~~~~~~g~~~~v~~~~gd-~~~~-l~  185 (282)
                      .....++.+|||||||+|..+..+++..++.++|+++|+++.      +++.+++++...++.++++++++| .... ++
T Consensus        38 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  117 (275)
T 3bkx_A           38 AWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP  117 (275)
T ss_dssp             HHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG
T ss_pred             HcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC
Confidence            334567889999999999999999998644689999999997      999999999988887789999998 3211 11


Q ss_pred             HHHhCCCCCceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          186 ALILNGEASSYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      .     ..++||+|++.....+   ...+++.+..+   ++|||.+++.+...++
T Consensus       118 ~-----~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l---~~~gG~l~~~~~~~~~  164 (275)
T 3bkx_A          118 I-----ADQHFDRVVLAHSLWYFASANALALLFKNM---AAVCDHVDVAEWSMQP  164 (275)
T ss_dssp             G-----TTCCCSEEEEESCGGGSSCHHHHHHHHHHH---TTTCSEEEEEEECSSC
T ss_pred             C-----CCCCEEEEEEccchhhCCCHHHHHHHHHHH---hCCCCEEEEEEecCCC
Confidence            1     1478999999776432   34466666776   8889999998766544

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.47  E-value=5e-13  Score=122.07  Aligned_cols=120  Identities=12%  Similarity=0.066  Sum_probs=88.3

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH-------HHhCCC-CcEEEEEcchhh
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-------ERAGVS-HKVKIKHGLAAD  182 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-------~~~g~~-~~v~~~~gd~~~  182 (282)
                      +...+...++.+|||||||+|..++.++...+ ..+++|||+++.+++.|+++.       +.+|+. .++++++||+.+
T Consensus       165 il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~  243 (438)
T 3uwp_A          165 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  243 (438)
T ss_dssp             HHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence            33444567888999999999999999998765 457999999999999998764       345663 689999999987


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          183 SLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ......    .+.||+||+....  .+....+..+.+.   |||||.||+.+.+.+..
T Consensus       244 lp~~d~----~~~aDVVf~Nn~~F~pdl~~aL~Ei~Rv---LKPGGrIVssE~f~p~d  294 (438)
T 3uwp_A          244 EEWRER----IANTSVIFVNNFAFGPEVDHQLKERFAN---MKEGGRIVSSKPFAPLN  294 (438)
T ss_dssp             HHHHHH----HHTCSEEEECCTTCCHHHHHHHHHHHTT---SCTTCEEEESSCSSCTT
T ss_pred             Cccccc----cCCccEEEEcccccCchHHHHHHHHHHc---CCCCcEEEEeecccCCC
Confidence            532110    1479999987652  2333344445455   99999999987775543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.47  E-value=1.5e-12  Score=120.90  Aligned_cols=159  Identities=18%  Similarity=0.235  Sum_probs=116.7

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+......++..++...++.+|||+|||+|..+..++...+ +++|+++|+++.+++.++++++..|+.  ++++++|+.
T Consensus       229 ~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~  305 (429)
T 1sqg_A          229 TVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGR  305 (429)
T ss_dssp             EECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTT
T ss_pred             EeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchh
Confidence            45566677777777788889999999999999999999886 589999999999999999999998874  789999998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      +..+.+.    .++||+|++|++...                         ....++.+.++   |||||++++....+.
T Consensus       306 ~~~~~~~----~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~---LkpGG~lvystcs~~  378 (429)
T 1sqg_A          306 YPSQWCG----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPH---LKTGGTLVYATCSVL  378 (429)
T ss_dssp             CTHHHHT----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGG---EEEEEEEEEEESCCC
T ss_pred             hchhhcc----cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEECCCC
Confidence            7654331    368999999865211                         12456666666   999999999766443


Q ss_pred             CcccCCcCCChhhHHHHHHHHHhhhCCCeEE-----------EEeec---CCceEEEEE
Q 023411          237 GKVADQMVNDAKTISIRNFNKNLMEDERVSI-----------SMVPI---GDGMTICQK  281 (282)
Q Consensus       237 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~lp~---~~Gl~~~~k  281 (282)
                      ..        ++..-+..|++   +.++++.           .++|-   .||+-+|+-
T Consensus       379 ~~--------ene~~v~~~l~---~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l  426 (429)
T 1sqg_A          379 PE--------ENSLQIKAFLQ---RTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKL  426 (429)
T ss_dssp             GG--------GTHHHHHHHHH---HCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEE
T ss_pred             hh--------hHHHHHHHHHH---hCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEE
Confidence            32        11233555554   3454443           45663   588888763

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.47  E-value=5.1e-14  Score=118.10  Aligned_cols=108  Identities=15%  Similarity=0.153  Sum_probs=84.8

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      ++..+....++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+   +++++++|+.+..+    
T Consensus        42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~----  111 (216)
T 3ofk_A           42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFST----  111 (216)
T ss_dssp             HHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCC----
T ss_pred             HHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCC----
Confidence            3444445566789999999999999999886   3699999999999999999887533   69999999976531    


Q ss_pred             CCCCCceeEEEEcCCcccc------HHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          190 NGEASSYDFAFVDAEKRMY------QEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~------~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                         .++||+|++....++.      ...++.+.++   |+|||++++...
T Consensus       112 ---~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~---L~pgG~l~~~~~  155 (216)
T 3ofk_A          112 ---AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKM---LAPGGHLVFGSA  155 (216)
T ss_dssp             ---SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHT---EEEEEEEEEEEE
T ss_pred             ---CCCccEEEEccHHHhCCCHHHHHHHHHHHHHH---cCCCCEEEEEec
Confidence               5899999998664332      3456677776   999999998653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.47  E-value=1.9e-13  Score=117.48  Aligned_cols=105  Identities=11%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--------CCCCcEEEEEcchhhHHHHHHhC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      ++.+|||||||+|.+++.++...+ +.+|+|||+++.+++.++++++.+        ++. +++++++|+.+.++...  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhc--
Confidence            556899999999999999999886 679999999999999999998876        665 59999999987444221  


Q ss_pred             CCCCceeEEEEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                       +.+.+|.|++......           ...++..+.++   |+|||+|++.
T Consensus       125 -~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~---LkpgG~l~~~  172 (246)
T 2vdv_E          125 -EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYV---LKEGGVVYTI  172 (246)
T ss_dssp             -CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHH---EEEEEEEEEE
T ss_pred             -cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHH---cCCCCEEEEE
Confidence             2478999987543221           25788889998   9999999883

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.47  E-value=5.2e-13  Score=124.82  Aligned_cols=125  Identities=16%  Similarity=0.231  Sum_probs=97.6

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +......++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..|+. +++++++|+.+
T Consensus       243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~  321 (450)
T 2yxl_A          243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARK  321 (450)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTC
T ss_pred             ecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhh
Confidence            44455666677777788899999999999999999998874489999999999999999999999986 49999999876


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCcccc-------------------------HHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMY-------------------------QEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~-------------------------~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      ..+.+    ..++||+|++|++....                         ...++.+.++   |||||.+++....+
T Consensus       322 ~~~~~----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~---LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          322 APEII----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARL---VKPGGRLLYTTCSI  392 (450)
T ss_dssp             CSSSS----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTT---EEEEEEEEEEESCC
T ss_pred             cchhh----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEeCCC
Confidence            42211    12689999998652110                         3456666666   99999999876543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.47  E-value=1.8e-13  Score=116.65  Aligned_cols=115  Identities=23%  Similarity=0.393  Sum_probs=92.5

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ..+.....+...+...++.+|||||||+|..+..+++..+  ++|+++|+++.+++.++++++..++.+ ++++.+|...
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  151 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSK  151 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCccc
Confidence            4555666666666777888999999999999999999875  789999999999999999999988875 9999999743


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .++.      ..+||+|+++.......   +.+.+.   |+|||.+++.-
T Consensus       152 ~~~~------~~~fD~Ii~~~~~~~~~---~~~~~~---L~pgG~lvi~~  189 (235)
T 1jg1_A          152 GFPP------KAPYDVIIVTAGAPKIP---EPLIEQ---LKIGGKLIIPV  189 (235)
T ss_dssp             CCGG------GCCEEEEEECSBBSSCC---HHHHHT---EEEEEEEEEEE
T ss_pred             CCCC------CCCccEEEECCcHHHHH---HHHHHh---cCCCcEEEEEE
Confidence            2221      24699999988766543   356677   99999998853

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.47  E-value=2.4e-13  Score=118.97  Aligned_cols=104  Identities=17%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++++|||+|||+|.+++.+|...  .++|+++|+||.+++.+++|++.+++.++++++++|+.+..+       .+.|
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-------~~~~  193 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIA  193 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-------ccCC
Confidence            3578899999999999999999863  369999999999999999999999999999999999987643       5789


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |.|+++.+... ..++..+.++   |++||+|.++..
T Consensus       194 D~Vi~~~p~~~-~~~l~~a~~~---lk~gG~ih~~~~  226 (278)
T 3k6r_A          194 DRILMGYVVRT-HEFIPKALSI---AKDGAIIHYHNT  226 (278)
T ss_dssp             EEEEECCCSSG-GGGHHHHHHH---EEEEEEEEEEEE
T ss_pred             CEEEECCCCcH-HHHHHHHHHH---cCCCCEEEEEee
Confidence            99999876443 3567788888   999999987654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.46  E-value=1.6e-13  Score=116.74  Aligned_cols=104  Identities=13%  Similarity=0.090  Sum_probs=85.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..+..++.   .+.+|+++|+++.+++.+++++...+...+++++++|+.+..+       .++||+
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~fD~  135 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-------TELFDL  135 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-------SSCEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-------CCCeeE
Confidence            456999999999999998876   2679999999999999999999876666679999999976432       469999


Q ss_pred             EEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          199 AFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       199 V~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |++.....     ....+++.+.++   |+|||++++.....
T Consensus       136 v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          136 IFDYVFFCAIEPEMRPAWAKSMYEL---LKPDGELITLMYPI  174 (235)
T ss_dssp             EEEESSTTTSCGGGHHHHHHHHHHH---EEEEEEEEEEECCC
T ss_pred             EEEChhhhcCCHHHHHHHHHHHHHH---CCCCcEEEEEEecc
Confidence            99865532     456788888888   99999999865443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.46  E-value=1.3e-13  Score=116.77  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=83.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~~~~~  195 (282)
                      .++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++.+..   .+++++++|+.+..  ...     .++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~-----~~~  143 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRAL-----VPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTT-----CCC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcc-----cCC
Confidence            35679999999999999999988754689999999999999998887653   46999999987632  111     368


Q ss_pred             eeEEEEcCCccccH-HHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEKRMYQ-EYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~~~~~-~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+|+++....... .++..+.++   |+|||.+++.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVY---LKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHh---cCCCCEEEEE
Confidence            99999998744443 348888888   9999999886

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.46  E-value=9.6e-14  Score=118.04  Aligned_cols=105  Identities=13%  Similarity=0.155  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|+|||||+|+.++.++...+ ..+|+++|+++.+++.|+++++.+|+.++++++++|..+.+..      .++||+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~------~~~~D~   93 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE------ADNIDT   93 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG------GGCCCE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc------ccccCE
Confidence            567999999999999999998754 5689999999999999999999999999999999999875431      237999


Q ss_pred             EEEcCC-ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDAE-KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |++.+- ..-....++...+.   |+++|.+|+...
T Consensus        94 IviaGmGg~lI~~IL~~~~~~---l~~~~~lIlqp~  126 (230)
T 3lec_A           94 ITICGMGGRLIADILNNDIDK---LQHVKTLVLQPN  126 (230)
T ss_dssp             EEEEEECHHHHHHHHHHTGGG---GTTCCEEEEEES
T ss_pred             EEEeCCchHHHHHHHHHHHHH---hCcCCEEEEECC
Confidence            886543 33456667777777   999999999764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.46  E-value=4.4e-13  Score=121.40  Aligned_cols=120  Identities=19%  Similarity=0.212  Sum_probs=98.2

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+.+..+..+..++...++.+|||+|||+|.+++.++...++..+++|+|+++.+++.|+++++.+|+. +++++++|+.
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~  264 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADAR  264 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGG
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChh
Confidence            456667777777777778889999999999999999997633689999999999999999999999998 7999999998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +....      .+.||+|++|.+...           +..+++.+.++   |+|||.+++-
T Consensus       265 ~~~~~------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~---LkpgG~l~i~  316 (354)
T 3tma_A          265 HLPRF------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALAL---LPPGGRVALL  316 (354)
T ss_dssp             GGGGT------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHT---SCTTCEEEEE
T ss_pred             hCccc------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHh---cCCCcEEEEE
Confidence            75332      367899999876321           24566667777   9999999883

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.46  E-value=6.1e-13  Score=130.52  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=94.8

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      .+....++++|||+|||+|.+++.++...  ..+|+++|+|+.+++.++++++.+|+. ++++++++|+.+.++..    
T Consensus       533 ~l~~~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~----  606 (703)
T 3v97_A          533 MLGQMSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA----  606 (703)
T ss_dssp             HHHHHCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC----
T ss_pred             HHHHhcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc----
Confidence            34445678899999999999999999742  357999999999999999999999997 68999999999877654    


Q ss_pred             CCCceeEEEEcCCc--------------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          192 EASSYDFAFVDAEK--------------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       192 ~~~~fDlV~id~~~--------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                       .++||+|++|++.              ..+..++..+.++   |+|||+|++........
T Consensus       607 -~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~---LkpgG~L~~s~~~~~~~  663 (703)
T 3v97_A          607 -NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRL---LRAGGTIMFSNNKRGFR  663 (703)
T ss_dssp             -CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHH---EEEEEEEEEEECCTTCC
T ss_pred             -CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHh---cCCCcEEEEEECCcccc
Confidence             5799999999862              1245567777777   99999999987664443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.46  E-value=8.1e-14  Score=121.83  Aligned_cols=111  Identities=21%  Similarity=0.234  Sum_probs=87.1

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-CCCCcEEEEEcchhhHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-g~~~~v~~~~gd~~~~l~~l  187 (282)
                      .++...+...++.+|||+|||+|..+..+++.+.++++|+++|+++++++.++++++.. |. ++++++++|+.+..+  
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~--  176 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS--  176 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC--
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc--
Confidence            34445556667889999999999999999998544689999999999999999999887 74 469999999976321  


Q ss_pred             HhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          188 ILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                           .++||+|+++..  +...+++.+.++   |+|||++++..
T Consensus       177 -----~~~fD~Vi~~~~--~~~~~l~~~~~~---LkpgG~l~i~~  211 (275)
T 1yb2_A          177 -----DQMYDAVIADIP--DPWNHVQKIASM---MKPGSVATFYL  211 (275)
T ss_dssp             -----SCCEEEEEECCS--CGGGSHHHHHHT---EEEEEEEEEEE
T ss_pred             -----CCCccEEEEcCc--CHHHHHHHHHHH---cCCCCEEEEEe
Confidence                 468999999654  334668888888   99999999864

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.45  E-value=4.6e-13  Score=117.27  Aligned_cols=102  Identities=15%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...++  +++++++|+.+...       .++
T Consensus       117 ~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-------~~~  184 (286)
T 3m70_A          117 KIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-------QEN  184 (286)
T ss_dssp             HHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-------CSC
T ss_pred             hccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-------cCC
Confidence            3347789999999999999999986   46999999999999999999998887  69999999976422       478


Q ss_pred             eeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          196 YDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       196 fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ||+|++....     .....+++.+.++   |+|||++++-.
T Consensus       185 fD~i~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~  223 (286)
T 3m70_A          185 YDFIVSTVVFMFLNRERVPSIIKNMKEH---TNVGGYNLIVA  223 (286)
T ss_dssp             EEEEEECSSGGGSCGGGHHHHHHHHHHT---EEEEEEEEEEE
T ss_pred             ccEEEEccchhhCCHHHHHHHHHHHHHh---cCCCcEEEEEE
Confidence            9999998753     3345678888887   99999976643

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.45  E-value=1.1e-13  Score=118.25  Aligned_cols=105  Identities=21%  Similarity=0.200  Sum_probs=83.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..+..+++..  ..+|+++|+++.+++.+++++...+ ..+++++++|+.+...      ..++||+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~------~~~~fD~  149 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTP------EPDSYDV  149 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCC------CSSCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCC------CCCCEEE
Confidence            57899999999999999988764  3699999999999999999987764 3468999999865421      1468999


Q ss_pred             EEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          199 AFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       199 V~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |++.....+     ...+++.+.++   |+|||++++.+...
T Consensus       150 v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~~  188 (241)
T 2ex4_A          150 IWIQWVIGHLTDQHLAEFLRRCKGS---LRPNGIIVIKDNMA  188 (241)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEEB
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHh---cCCCeEEEEEEccC
Confidence            999877443     33567777777   99999999865443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.45  E-value=3.9e-13  Score=114.37  Aligned_cols=108  Identities=12%  Similarity=0.174  Sum_probs=83.5

Q ss_pred             HHHHHHHhhc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411          109 QLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       109 ~ll~~l~~~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (282)
                      ..+..++...  ++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...+.  +++++++|+.+..  
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--   97 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN--   97 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC--
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC--
Confidence            3344444433  6789999999999999999886   46899999999999999999988765  5899999987542  


Q ss_pred             HHhCCCCCceeEEEEcC-Ccccc------HHHHHHHHHhhcCCCCCcEEEEe
Q 023411          187 LILNGEASSYDFAFVDA-EKRMY------QEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~-~~~~~------~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .     .++||+|++.. ..++.      ...++.+.++   |+|||+++++
T Consensus        98 ~-----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~---L~pgG~l~~~  141 (246)
T 1y8c_A           98 I-----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNH---LKEGGVFIFD  141 (246)
T ss_dssp             C-----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTT---EEEEEEEEEE
T ss_pred             c-----cCCceEEEEcCccccccCCHHHHHHHHHHHHHh---cCCCcEEEEE
Confidence            1     37899999987 54333      3455555555   9999999985

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.45  E-value=1.4e-13  Score=117.99  Aligned_cols=105  Identities=10%  Similarity=0.141  Sum_probs=86.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|+|||||+|++++.++...+ ..+|+++|+++.+++.|+++++.+|+.++++++++|..+.+..      .++||+
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~------~~~~D~   93 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK------KDAIDT   93 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG------GGCCCE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc------cccccE
Confidence            557999999999999999998754 5689999999999999999999999999999999999875431      135999


Q ss_pred             EEEcC-CccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDA-EKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~-~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |++.+ ...-....++...+.   |+++|.+|+...
T Consensus        94 IviagmGg~lI~~IL~~~~~~---L~~~~~lIlq~~  126 (244)
T 3gnl_A           94 IVIAGMGGTLIRTILEEGAAK---LAGVTKLILQPN  126 (244)
T ss_dssp             EEEEEECHHHHHHHHHHTGGG---GTTCCEEEEEES
T ss_pred             EEEeCCchHHHHHHHHHHHHH---hCCCCEEEEEcC
Confidence            88643 334456677777777   999999999764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.45  E-value=1.4e-12  Score=117.64  Aligned_cols=111  Identities=13%  Similarity=0.123  Sum_probs=91.3

Q ss_pred             cC-CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~-~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .+ +.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|..+..+..     .++|
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~  249 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE-----GGAA  249 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT-----TCCE
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC-----CCCc
Confidence            44 78999999999999999999987 689999999 8999999999999998889999999997643112     4679


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      |+|++....+++     ...++.+.+.   |+|||.+++.+..++..
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~---L~pgG~l~i~e~~~~~~  293 (352)
T 3mcz_A          250 DVVMLNDCLHYFDAREAREVIGHAAGL---VKPGGALLILTMTMNDD  293 (352)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHT---EEEEEEEEEEEECCCTT
T ss_pred             cEEEEecccccCCHHHHHHHHHHHHHH---cCCCCEEEEEEeccCCC
Confidence            999997765432     4566666666   99999999887766554

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.44  E-value=5.6e-13  Score=122.57  Aligned_cols=108  Identities=24%  Similarity=0.372  Sum_probs=88.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++++|||+|||+|.+++.++.. + ..+|+++|+++.+++.|+++++.+++.++++++++|+.+.++.+...  .++||+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~--~~~fD~  292 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK--GEKFDI  292 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT--TCCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh--CCCCCE
Confidence            7789999999999999999985 2 35999999999999999999999998767999999998876654322  368999


Q ss_pred             EEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |++|.+.            ..+..++..+.++   |+|||++++...
T Consensus       293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~lv~~~~  336 (396)
T 2as0_A          293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL---VKDGGILVTCSC  336 (396)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT---EEEEEEEEEEEC
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHh---cCCCcEEEEEEC
Confidence            9999764            2344556666666   999998887544

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.44  E-value=2.6e-13  Score=124.25  Aligned_cols=118  Identities=22%  Similarity=0.271  Sum_probs=91.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-----C-CC-CcEEEEEcchhhHHHHHHh
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----G-VS-HKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----g-~~-~~v~~~~gd~~~~l~~l~~  189 (282)
                      ..++.+|||||||+|..+..+++..+++++|+++|+++.+++.++++++..     | .. .+++++++|+.+.......
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            457789999999999999999998755789999999999999999998765     3 22 5799999999764210000


Q ss_pred             CCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          190 NGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ....++||+|++.....   +....++.+.++   |||||++++.++....
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~---LkpgG~l~i~~~~~~~  208 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRV---LRDGGELYFSDVYADR  208 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEEEESS
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHH---cCCCCEEEEEEecccc
Confidence            01157999999987643   456778888888   9999999998766544

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.44  E-value=2.3e-13  Score=113.30  Aligned_cols=115  Identities=14%  Similarity=0.143  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       107 ~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (282)
                      ...++..+....++.+|||+|||+|..+..++...  +.+|+++|+++.+++.+++++...+.  +++++++|+.+..  
T Consensus        11 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--   84 (209)
T 2p8j_A           11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLP--   84 (209)
T ss_dssp             HHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCC--
T ss_pred             HHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCC--
Confidence            34455555556678899999999999865555442  57999999999999999999887763  5899999987531  


Q ss_pred             HHhCCCCCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          187 LILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .    ..++||+|++.....     +....++.+.++   |+|||++++....
T Consensus        85 ~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~  130 (209)
T 2p8j_A           85 F----KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRV---LKPGGLACINFLT  130 (209)
T ss_dssp             S----CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEE
T ss_pred             C----CCCceeEEEEcChHHhCCHHHHHHHHHHHHHH---cCCCcEEEEEEec
Confidence            1    147899999876533     345567777777   9999999997654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.44  E-value=4.4e-13  Score=117.62  Aligned_cols=119  Identities=18%  Similarity=0.169  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC---CcEEEEEcchh
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAA  181 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~  181 (282)
                      .....++..++...++.+|||||||+|..+..++..   +.+|+++|+|+.+++.++++....+..   .++.+..+|+.
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            344456666666678889999999999999999986   459999999999999999887544332   35889999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEc-CCcc---c-------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          182 DSLKALILNGEASSYDFAFVD-AEKR---M-------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id-~~~~---~-------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +....+.   ..++||+|++. ....   +       ....++.+.++   |+|||++++..
T Consensus       120 ~~~~~~~---~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~  175 (293)
T 3thr_A          120 TLDKDVP---AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASM---VRPGGLLVIDH  175 (293)
T ss_dssp             GHHHHSC---CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHT---EEEEEEEEEEE
T ss_pred             hCccccc---cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHH---cCCCeEEEEEe
Confidence            6543221   15799999996 4432   2       45577777777   99999999864

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.44  E-value=1e-12  Score=120.64  Aligned_cols=102  Identities=23%  Similarity=0.360  Sum_probs=83.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++++|||+|||+|.+++.++..   ++.|+++|+|+.+++.++++++.+++..  ++.++|+.+.++..     .+.||+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~-----~~~fD~  283 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL-----EGPFHH  283 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC-----CCCEEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh-----cCCCCE
Confidence            4789999999999999999985   3569999999999999999999999875  46699998876544     345999


Q ss_pred             EEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |++|.+.            ..+..++..+.++   |+|||+|++...
T Consensus       284 Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~---LkpGG~Lv~~s~  327 (393)
T 4dmg_A          284 VLLDPPTLVKRPEELPAMKRHLVDLVREALRL---LAEEGFLWLSSC  327 (393)
T ss_dssp             EEECCCCCCSSGGGHHHHHHHHHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             EEECCCcCCCCHHHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEEC
Confidence            9999773            2345566666777   999999985433

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.44  E-value=3.6e-13  Score=114.18  Aligned_cols=112  Identities=18%  Similarity=0.236  Sum_probs=88.9

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ..+.....+...+...++.+|||||||+|..+..++...   .+|+++|+++.+++.+++++...+   +++++++|+.+
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~  127 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTL  127 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccc
Confidence            344444455555566678899999999999999999874   699999999999999999987665   69999999976


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .++.      .++||+|+++...++..   +.+.++   |+|||++++..
T Consensus       128 ~~~~------~~~fD~v~~~~~~~~~~---~~~~~~---L~pgG~l~~~~  165 (231)
T 1vbf_A          128 GYEE------EKPYDRVVVWATAPTLL---CKPYEQ---LKEGGIMILPI  165 (231)
T ss_dssp             CCGG------GCCEEEEEESSBBSSCC---HHHHHT---EEEEEEEEEEE
T ss_pred             cccc------CCCccEEEECCcHHHHH---HHHHHH---cCCCcEEEEEE
Confidence            3221      47899999998766553   356677   99999998864

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.44  E-value=5.5e-13  Score=110.58  Aligned_cols=102  Identities=16%  Similarity=0.177  Sum_probs=80.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++ +|||||||+|..+..+++.   +.+|+++|+++.+++.++++....+.  +++++++|+.+..  .    ..++||+
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~----~~~~fD~   97 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD--I----VADAWEG   97 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS--C----CTTTCSE
T ss_pred             CC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC--C----CcCCccE
Confidence            44 9999999999999999875   46999999999999999999988776  5999999987641  1    1478999


Q ss_pred             EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |++.....   ....+++.+.++   |+|||.+++.....
T Consensus        98 v~~~~~~~~~~~~~~~l~~~~~~---L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           98 IVSIFCHLPSSLRQQLYPKVYQG---LKPGGVFILEGFAP  134 (202)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTT---CCSSEEEEEEEECT
T ss_pred             EEEEhhcCCHHHHHHHHHHHHHh---cCCCcEEEEEEecc
Confidence            99854322   334556666666   99999999986543

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.44  E-value=2.4e-13  Score=115.63  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++.+..   ++++++++|+.+......  . .++||
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~--~-~~~~D  145 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYAN--I-VEKVD  145 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTT--T-SCCEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccc--c-CccEE
Confidence            3567999999999999999999886 689999999999999999887643   569999999865211010  0 36899


Q ss_pred             EEEEcCCc-cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEK-RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~-~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|+.+... .....+++.+.++   |+|||.+++.
T Consensus       146 ~v~~~~~~~~~~~~~l~~~~~~---LkpgG~l~i~  177 (230)
T 1fbn_A          146 VIYEDVAQPNQAEILIKNAKWF---LKKGGYGMIA  177 (230)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEEecCChhHHHHHHHHHHHh---CCCCcEEEEE
Confidence            99977542 2235668888888   9999999985

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.44  E-value=4.7e-13  Score=111.93  Aligned_cols=109  Identities=17%  Similarity=0.187  Sum_probs=86.6

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      .++..+....++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++    .+. .+++++++|+.+..+   
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~---  104 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTP---  104 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCC---
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCC---
Confidence            34555555667789999999999999999987   4799999999999999887    444 359999999976511   


Q ss_pred             hCCCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          189 LNGEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                          .++||+|++....++     ...+++.+.++   |+|||.+++.+...
T Consensus       105 ----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~---L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          105 ----DRQWDAVFFAHWLAHVPDDRFEAFWESVRSA---VAPGGVVEFVDVTD  149 (218)
T ss_dssp             ----SSCEEEEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEECC
T ss_pred             ----CCceeEEEEechhhcCCHHHHHHHHHHHHHH---cCCCeEEEEEeCCC
Confidence                589999999877444     25567777787   99999999876543

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.44  E-value=5.6e-13  Score=122.05  Aligned_cols=106  Identities=25%  Similarity=0.371  Sum_probs=89.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|.+++.++..   ..+|+++|+++.+++.|+++++.+++.+ ++++++|+.+.++.+...  .++||+
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~--~~~fD~  282 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE--GERFDL  282 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT--TCCEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc--CCCeeE
Confidence            6779999999999999999987   3689999999999999999999999877 999999998877654322  368999


Q ss_pred             EEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |++|.+.            ..+..++..+.++   |+|||++++...
T Consensus       283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~  326 (382)
T 1wxx_A          283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKL---LKEGGILATASC  326 (382)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             EEECCCCCCCChhHHHHHHHHHHHHHHHHHHh---cCCCCEEEEEEC
Confidence            9999864            2345566677777   999999988654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.44  E-value=2.4e-13  Score=114.21  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=85.4

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      .++..+ ...++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++.     .+++++++|+.+...   
T Consensus        36 ~~l~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~---  103 (220)
T 3hnr_A           36 DILEDV-VNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEV---  103 (220)
T ss_dssp             HHHHHH-HHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCC---
T ss_pred             HHHHHh-hccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCC---
Confidence            334333 3347789999999999999999986   5799999999999999988764     468999999876421   


Q ss_pred             hCCCCCceeEEEEcCCccccHH-----HHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          189 LNGEASSYDFAFVDAEKRMYQE-----YFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~-----~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                          .++||+|++....++...     .++.+.++   |+|||.+++.+..+..
T Consensus       104 ----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~~~~  150 (220)
T 3hnr_A          104 ----PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQL---LNKGGKIVFADTIFAD  150 (220)
T ss_dssp             ----CSCCSEEEEESCGGGSCHHHHHHHHHHHHHH---SCTTCEEEEEEECBSS
T ss_pred             ----CCCeEEEEECcchhcCChHHHHHHHHHHHHh---cCCCCEEEEEeccccC
Confidence                379999999877544322     67777777   9999999998765443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.44  E-value=7.1e-13  Score=113.72  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=81.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++....+.  +++++++|+.+...       .++||
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD  107 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFD  107 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhccc-------CCCcc
Confidence            35679999999999999999985   47999999999999999999988775  58999999976421       46899


Q ss_pred             EEEEcCC-c-----cccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          198 FAFVDAE-K-----RMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       198 lV~id~~-~-----~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +|++... .     ......++.+.++   |+|||+++++-
T Consensus       108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~---L~pgG~li~~~  145 (252)
T 1wzn_A          108 AVTMFFSTIMYFDEEDLRKLFSKVAEA---LKPGGVFITDF  145 (252)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             EEEEcCCchhcCCHHHHHHHHHHHHHH---cCCCeEEEEec
Confidence            9998532 1     2345567777777   99999999863

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.43  E-value=4.9e-13  Score=113.76  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~~~~~  195 (282)
                      .++.+|||+|||+|.++..+++..++.++|+++|+++.+++.+.++.+..   .+++++++|+.+..  +..     .++
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~-----~~~  147 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML-----IAM  147 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG-----CCC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc-----CCc
Confidence            45679999999999999999998744689999999999888887777664   46999999997632  222     478


Q ss_pred             eeEEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+|+++..... ...++..+.++   |+|||++++.
T Consensus       148 ~D~V~~~~~~~~~~~~~~~~~~~~---LkpgG~l~i~  181 (233)
T 2ipx_A          148 VDVIFADVAQPDQTRIVALNAHTF---LRNGGHFVIS  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEEEEcCCCccHHHHHHHHHHHH---cCCCeEEEEE
Confidence            999999876332 23456778888   9999999994

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.43  E-value=4.8e-12  Score=113.17  Aligned_cols=108  Identities=16%  Similarity=0.285  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++..| +.+++++|++ .+++.+++++...++.++++++.+|+.+.  ..     .+.||
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-----~~~~D  234 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY-----GNDYD  234 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC-----CSCEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC-----CCCCc
Confidence            5678999999999999999999986 6899999999 99999999999999888899999998753  11     34599


Q ss_pred             EEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          198 FAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       198 lV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +|++....++.     ...++.+.+.   |+|||.+++.+...+.
T Consensus       235 ~v~~~~~l~~~~~~~~~~~l~~~~~~---L~pgG~l~i~e~~~~~  276 (335)
T 2r3s_A          235 LVLLPNFLHHFDVATCEQLLRKIKTA---LAVEGKVIVFDFIPNS  276 (335)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEECCCCT
T ss_pred             EEEEcchhccCCHHHHHHHHHHHHHh---CCCCcEEEEEeecCCC
Confidence            99997664443     4677777777   9999988887665543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.42  E-value=5.2e-13  Score=122.04  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=87.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++++|||||||+|..+..+++..  ..+|+++|++ .+++.|+++++.+++.++++++++|+.+...       .++
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~  129 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL-------PEK  129 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC-------SSC
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc-------CCc
Confidence            34567899999999999999999862  2599999999 9999999999999999999999999976421       378


Q ss_pred             eeEEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          196 YDFAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       196 fDlV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ||+|+++..      ......++..+.++   |+|||+++++...
T Consensus       130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~---LkpgG~li~~~~~  171 (376)
T 3r0q_C          130 VDVIISEWMGYFLLRESMFDSVISARDRW---LKPTGVMYPSHAR  171 (376)
T ss_dssp             EEEEEECCCBTTBTTTCTHHHHHHHHHHH---EEEEEEEESSEEE
T ss_pred             ceEEEEcChhhcccchHHHHHHHHHHHhh---CCCCeEEEEecCe
Confidence            999999652      12355577778888   9999999887654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.42  E-value=2.2e-13  Score=115.43  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHHHCCC-----CCEEEEEecCccHHHHHHHHHHHhCC----CCc
Q 023411          104 SPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGV----SHK  172 (282)
Q Consensus       104 ~~~~~~ll~~l~--~~~~~~~VLEIG~G~G~~t~~la~~~~~-----~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~  172 (282)
                      .|.....+...+  ...++.+|||||||+|+.+..+++..+.     .++|+++|+++++++.+++++...+.    ..+
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            444333333433  3556789999999999999999986542     26999999999999999999987662    236


Q ss_pred             EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++++++|..+..+.      .++||+|+++...++..   +.+.++   |+|||.+++.
T Consensus       147 v~~~~~d~~~~~~~------~~~fD~I~~~~~~~~~~---~~~~~~---LkpgG~lvi~  193 (227)
T 1r18_A          147 LLIVEGDGRKGYPP------NAPYNAIHVGAAAPDTP---TELINQ---LASGGRLIVP  193 (227)
T ss_dssp             EEEEESCGGGCCGG------GCSEEEEEECSCBSSCC---HHHHHT---EEEEEEEEEE
T ss_pred             eEEEECCcccCCCc------CCCccEEEECCchHHHH---HHHHHH---hcCCCEEEEE
Confidence            99999998763221      37899999998866543   567777   9999999985

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.42  E-value=6.9e-13  Score=121.33  Aligned_cols=114  Identities=18%  Similarity=0.298  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHhh-----cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          104 SPDQAQLLAMLVQI-----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       104 ~~~~~~ll~~l~~~-----~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      .+....++..+...     .++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++..+++.  ++++++
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~  287 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALHS  287 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEEC
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEc
Confidence            44444455555443     25679999999999999999986   469999999999999999999998875  899999


Q ss_pred             chhhHHHHHHhCCCCCceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          179 LAADSLKALILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       179 d~~~~l~~l~~~~~~~~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+.+....      .++||+|+++.+.+        ....+++.+.++   |+|||.+++.
T Consensus       288 D~~~~~~~------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~---LkpGG~l~iv  339 (381)
T 3dmg_A          288 DVDEALTE------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAAR---LRPGGVFFLV  339 (381)
T ss_dssp             STTTTSCT------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             chhhcccc------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHh---cCcCcEEEEE
Confidence            99765321      37999999986533        244677778888   9999999884

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.42  E-value=5.2e-13  Score=120.79  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=87.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++++|||||||+|..+..+++. + ..+|+|+|++ ++++.|+++++.+++.++++++++|+.+..  +    ..++
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~  133 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE--L----PVEK  133 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC--C----SSSC
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc--C----CCCc
Confidence            4567889999999999999999986 3 4699999999 599999999999999989999999997651  1    1479


Q ss_pred             eeEEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ||+|+++..      ......++..+.++   |||||+++.+..
T Consensus       134 fD~Iis~~~~~~l~~~~~~~~~l~~~~r~---LkpgG~li~~~~  174 (349)
T 3q7e_A          134 VDIIISEWMGYCLFYESMLNTVLHARDKW---LAPDGLIFPDRA  174 (349)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHH---EEEEEEEESCEE
T ss_pred             eEEEEEccccccccCchhHHHHHHHHHHh---CCCCCEEccccc
Confidence            999998642      23456677888888   999999985543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.42  E-value=1.5e-12  Score=118.58  Aligned_cols=109  Identities=14%  Similarity=0.183  Sum_probs=90.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|+.+..        ..+|
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--------p~~~  269 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI--------PDGA  269 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC--------CSSC
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC--------CCCc
Confidence            34678999999999999999999987 789999999 9999999999999998889999999997421        2489


Q ss_pred             eEEEEcCCccccH-----HHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          197 DFAFVDAEKRMYQ-----EYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       197 DlV~id~~~~~~~-----~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      |+|++....+++.     ..++.+.+.   |+|||.+++.+..++..
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~---L~pgG~l~i~e~~~~~~  313 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATA---MKPDSRLLVIDNLIDER  313 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTT---CCTTCEEEEEEEBCCSS
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHH---cCCCCEEEEEEeccCCC
Confidence            9999987754432     456666666   99999999988776553

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.41  E-value=6e-14  Score=122.07  Aligned_cols=96  Identities=10%  Similarity=0.119  Sum_probs=79.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--CC-CCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~-~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .+++|||||||+|..+..+++. +  .+|+++|+++++++.|++++...  ++ .++++++.+|+.+.+         ++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---------~~  139 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---------KK  139 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---------CC
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---------hh
Confidence            5679999999999999999987 4  89999999999999999876431  12 357999999997642         57


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+|++|....  ..+++.+.+.   |+|||++++.
T Consensus       140 fD~Ii~d~~dp--~~~~~~~~~~---L~pgG~lv~~  170 (262)
T 2cmg_A          140 YDLIFCLQEPD--IHRIDGLKRM---LKEDGVFISV  170 (262)
T ss_dssp             EEEEEESSCCC--HHHHHHHHTT---EEEEEEEEEE
T ss_pred             CCEEEECCCCh--HHHHHHHHHh---cCCCcEEEEE
Confidence            99999996533  3478888888   9999999995

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.41  E-value=4.4e-13  Score=112.92  Aligned_cols=102  Identities=12%  Similarity=0.138  Sum_probs=82.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|..+..+++..   .+++++|+++++++.++++....+  .+++++++|+.+..  .    ..++||+
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~----~~~~~D~  106 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS--F----EDKTFDY  106 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC--S----CTTCEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC--C----CCCcEEE
Confidence            46799999999999999999864   399999999999999999998776  46999999987631  1    1468999


Q ss_pred             EEEcCC--ccc---cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          199 AFVDAE--KRM---YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       199 V~id~~--~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |++...  ..+   ....++.+.++   |+|||.+++.+..
T Consensus       107 v~~~~~~~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~~~  144 (227)
T 1ve3_A          107 VIFIDSIVHFEPLELNQVFKEVRRV---LKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHH---EEEEEEEEEEEEC
T ss_pred             EEEcCchHhCCHHHHHHHHHHHHHH---cCCCcEEEEEecC
Confidence            999876  333   34567777777   9999999887554

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.41  E-value=9.1e-13  Score=115.51  Aligned_cols=105  Identities=11%  Similarity=0.055  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.+++.+++++...+...+++++++|+.+....     ..++||
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~fD  135 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-----LGKEFD  135 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-----CSSCEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-----CCCCcC
Confidence            57789999999999999998876 2 4699999999999999999999888777899999998764110     157899


Q ss_pred             EEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          198 FAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       198 lV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +|++....++       ...+++.+.++   |+|||.+++..
T Consensus       136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~  174 (298)
T 1ri5_A          136 VISSQFSFHYAFSTSESLDIAQRNIARH---LRPGGYFIMTV  174 (298)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHT---EEEEEEEEEEE
T ss_pred             EEEECchhhhhcCCHHHHHHHHHHHHHh---cCCCCEEEEEE
Confidence            9999866422       34456666666   99999999864

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.41  E-value=4e-13  Score=115.43  Aligned_cols=99  Identities=13%  Similarity=0.190  Sum_probs=81.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..+++..+  .+|+++|+++.+++.++++..    ..+++++++|+.+.. .     ..++||
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-~-----~~~~fD  110 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIA-I-----EPDAYN  110 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCC-C-----CTTCEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCC-C-----CCCCeE
Confidence            4678999999999999999998643  399999999999999998765    356999999986532 1     147999


Q ss_pred             EEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++.....   +....++.+.++   |+|||.+++.
T Consensus       111 ~v~~~~~l~~~~~~~~~l~~~~~~---LkpgG~l~~~  144 (253)
T 3g5l_A          111 VVLSSLALHYIASFDDICKKVYIN---LKSSGSFIFS  144 (253)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEEchhhhhhhhHHHHHHHHHHH---cCCCcEEEEE
Confidence            999987643   456677888888   9999999996

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.41  E-value=2.3e-13  Score=117.12  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=81.3

Q ss_pred             CCCEEEEEcccccHHHHHHHHH--CCCCCEEEEEecCccHHHHHHHHHHHh---CCCCc---------------------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALV--LPESGCLVACERDARSLEVAKKYYERA---GVSHK---------------------  172 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~--~~~~~~v~~iD~s~~~~~~a~~~~~~~---g~~~~---------------------  172 (282)
                      ++.+|||+|||+|.++..++..  .+ +.+|+++|+|+.+++.|++++...   ++.++                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            4569999999999999999987  33 578999999999999999988765   44333                     


Q ss_pred             ----EE-------------EEEcchhhHHHHHHhCCCCCceeEEEEcCCcc------------ccHHHHHHHHHhhcCCC
Q 023411          173 ----VK-------------IKHGLAADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLLLQIR  223 (282)
Q Consensus       173 ----v~-------------~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~------------~~~~~l~~~~~~~~~Lk  223 (282)
                          ++             ++++|+.+..+..... ...+||+|+++.+..            .+..+++.+.++   |+
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~---Lk  205 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASA---LP  205 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHH---SC
T ss_pred             hhhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHh---cC
Confidence                66             9999987643210000 035899999986521            133677777787   99


Q ss_pred             CCcEEEEeC
Q 023411          224 VGGIIVIDN  232 (282)
Q Consensus       224 pgG~lv~dd  232 (282)
                      |||++++.+
T Consensus       206 pgG~l~~~~  214 (250)
T 1o9g_A          206 AHAVIAVTD  214 (250)
T ss_dssp             TTCEEEEEE
T ss_pred             CCcEEEEeC
Confidence            999999843

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.40  E-value=3e-12  Score=115.99  Aligned_cols=108  Identities=14%  Similarity=0.109  Sum_probs=87.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++++..++.++++++.+|+.+. +       ...
T Consensus       187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~  256 (359)
T 1x19_A          187 KLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S-------YPE  256 (359)
T ss_dssp             CCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C-------CCC
T ss_pred             CCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C-------CCC
Confidence            345678999999999999999999987 689999999 999999999999999888899999999764 1       233


Q ss_pred             eeEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          196 YDFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       196 fDlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      +|+|++....+++     ...++.+.+.   |+|||.+++-+...+
T Consensus       257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~---L~pgG~l~i~e~~~~  299 (359)
T 1x19_A          257 ADAVLFCRILYSANEQLSTIMCKKAFDA---MRSGGRLLILDMVID  299 (359)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTT---CCTTCEEEEEEECCC
T ss_pred             CCEEEEechhccCCHHHHHHHHHHHHHh---cCCCCEEEEEecccC
Confidence            4999998775443     4456666666   999999977665544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.40  E-value=2.5e-13  Score=116.79  Aligned_cols=99  Identities=14%  Similarity=0.126  Sum_probs=80.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..+++..| +++|+++|+++.+++.++++      ..+++++++|+.+..  .     .++||
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~-----~~~fD   97 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P-----AQKAD   97 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C-----SSCEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c-----cCCcC
Confidence            4667999999999999999999875 67999999999999999887      235899999987643  1     57899


Q ss_pred             EEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          198 FAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       198 lV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|++....++   ....++.+.++   |+|||.+++...
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~~~~~  133 (259)
T 2p35_A           98 LLYANAVFQWVPDHLAVLSQLMDQ---LESGGVLAVQMP  133 (259)
T ss_dssp             EEEEESCGGGSTTHHHHHHHHGGG---EEEEEEEEEEEE
T ss_pred             EEEEeCchhhCCCHHHHHHHHHHh---cCCCeEEEEEeC
Confidence            9999876443   45566666666   999999998653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.40  E-value=3.6e-12  Score=111.47  Aligned_cols=110  Identities=10%  Similarity=0.045  Sum_probs=83.4

Q ss_pred             CCCEEEEEcccc---cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH-----HhC
Q 023411          119 GAQRCIEVGVYT---GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL-----ILN  190 (282)
Q Consensus       119 ~~~~VLEIG~G~---G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l-----~~~  190 (282)
                      +..+|||||||+   |..+..+.+..| +++|+++|+|+.+++.+++++..   ..+++++++|+.+....+     ...
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            457999999999   988777766665 68999999999999999998842   357999999997642110     011


Q ss_pred             CCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          191 GEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      .+.++||+|++....++     ....++.+.+.   |+|||+|++.+...
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~---L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDA---LAPGSYLFMTSLVD  199 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHH---SCTTCEEEEEEEBC
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHh---CCCCcEEEEEEecC
Confidence            11358999998765332     45678888888   99999999987654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.40  E-value=1e-12  Score=118.54  Aligned_cols=104  Identities=14%  Similarity=0.147  Sum_probs=84.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ....++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++.+++.++++++++|+.+..  +    ..+
T Consensus        60 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~~~  130 (340)
T 2fyt_A           60 PHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH--L----PVE  130 (340)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC--C----SCS
T ss_pred             hhhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc--C----CCC
Confidence            34567889999999999999999986 3 36999999996 99999999999999788999999997641  1    137


Q ss_pred             ceeEEEEcCC---c---cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          195 SYDFAFVDAE---K---RMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       195 ~fDlV~id~~---~---~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +||+|+++..   .   ......+..+.++   |+|||+++.
T Consensus       131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~---LkpgG~lip  169 (340)
T 2fyt_A          131 KVDVIISEWMGYFLLFESMLDSVLYAKNKY---LAKGGSVYP  169 (340)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHH---EEEEEEEES
T ss_pred             cEEEEEEcCchhhccCHHHHHHHHHHHHhh---cCCCcEEEc
Confidence            8999998752   1   2345567777788   999999984

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.40  E-value=2.8e-12  Score=116.54  Aligned_cols=110  Identities=14%  Similarity=0.124  Sum_probs=90.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH-HHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL-KALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l-~~l~~~~~~~~f  196 (282)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.|++++...++.++++++.+|+.+.. + +     .++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~-----p~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVP-F-----PTGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCC-C-----CCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCC-C-----CCCc
Confidence            5778999999999999999999987 689999999 9999999999998888788999999987531 1 1     3689


Q ss_pred             eEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          197 DFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       197 DlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      |+|++....++     ....++.+.+.   |+|||.|++.+..++..
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~---L~pgG~l~i~e~~~~~~  293 (363)
T 3dp7_A          250 DAVWMSQFLDCFSEEEVISILTRVAQS---IGKDSKVYIMETLWDRQ  293 (363)
T ss_dssp             SEEEEESCSTTSCHHHHHHHHHHHHHH---CCTTCEEEEEECCTTSC
T ss_pred             CEEEEechhhhCCHHHHHHHHHHHHHh---cCCCcEEEEEeeccCCc
Confidence            99998765443     24567777777   99999998887776653

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.40  E-value=1.1e-12  Score=108.79  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       107 ~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (282)
                      ...++..+.... +.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++.      .+++++++|+.+.. .
T Consensus        30 ~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~-~   98 (203)
T 3h2b_A           30 DRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLS-D   98 (203)
T ss_dssp             THHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGG-G
T ss_pred             HHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccc-c
Confidence            344555555443 779999999999999999986   468999999999999998873      25899999997642 1


Q ss_pred             HHhCCCCCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          187 LILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      .     .++||+|++.....     +....++.+.++   |+|||.+++.....
T Consensus        99 ~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~---L~pgG~l~i~~~~~  144 (203)
T 3h2b_A           99 S-----PKRWAGLLAWYSLIHMGPGELPDALVALRMA---VEDGGGLLMSFFSG  144 (203)
T ss_dssp             S-----CCCEEEEEEESSSTTCCTTTHHHHHHHHHHT---EEEEEEEEEEEECC
T ss_pred             C-----CCCeEEEEehhhHhcCCHHHHHHHHHHHHHH---cCCCcEEEEEEccC
Confidence            1     58999999976533     456677888777   99999999976543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.40  E-value=4e-13  Score=116.51  Aligned_cols=95  Identities=18%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ...+|||||||+|..+..++..   ..+|+|+|+|+.+++.|++       ..+++++++++.+..  +    .+++||+
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~--~----~~~sfD~  102 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTG--L----PPASVDV  102 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCC--C----CSSCEEE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhc--c----cCCcccE
Confidence            3468999999999999999976   3699999999999877653       246999999986541  1    1689999


Q ss_pred             EEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          199 AFVDAEKR--MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       199 V~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |++....+  +...++.++.++   |||||+|++-.
T Consensus       103 v~~~~~~h~~~~~~~~~e~~rv---LkpgG~l~~~~  135 (257)
T 4hg2_A          103 AIAAQAMHWFDLDRFWAELRRV---ARPGAVFAAVT  135 (257)
T ss_dssp             EEECSCCTTCCHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             EEEeeehhHhhHHHHHHHHHHH---cCCCCEEEEEE
Confidence            99875532  355678888888   99999998743

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.39  E-value=1.2e-12  Score=117.35  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=89.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|+.+..        ..+||+
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------p~~~D~  238 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL--------PAGAGG  238 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------CCSCSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC--------CCCCcE
Confidence            467999999999999999999987 689999999 9999999999999998889999999996421        238999


Q ss_pred             EEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          199 AFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       199 V~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      |++....++     ....++.+.+.   |+|||.|++.+..++..
T Consensus       239 v~~~~vlh~~~~~~~~~~l~~~~~~---L~pgG~l~i~e~~~~~~  280 (332)
T 3i53_A          239 YVLSAVLHDWDDLSAVAILRRCAEA---AGSGGVVLVIEAVAGDE  280 (332)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHH---HTTTCEEEEEECCCC--
T ss_pred             EEEehhhccCCHHHHHHHHHHHHHh---cCCCCEEEEEeecCCCC
Confidence            999776443     24567777777   99999999988776654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.39  E-value=6.4e-13  Score=113.42  Aligned_cols=99  Identities=14%  Similarity=0.118  Sum_probs=79.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|.++..+++.   +.+|+++|+++.+++.++++         ++++++|..+.+..+.    +++|
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~----~~~f  102 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLP----DKYL  102 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSC----TTCB
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcC----CCCe
Confidence            346689999999999999999986   46899999999999888764         7889999877543221    5899


Q ss_pred             eEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+|++....+     +...+++.+.++   |||||++++....
T Consensus       103 D~i~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~  142 (240)
T 3dli_A          103 DGVMISHFVEHLDPERLFELLSLCYSK---MKYSSYIVIESPN  142 (240)
T ss_dssp             SEEEEESCGGGSCGGGHHHHHHHHHHH---BCTTCCEEEEEEC
T ss_pred             eEEEECCchhhCCcHHHHHHHHHHHHH---cCCCcEEEEEeCC
Confidence            9999976633     346788888888   9999999997654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.39  E-value=1.1e-12  Score=113.39  Aligned_cols=98  Identities=16%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++.      +++++++|+.+...       .++||+
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~-------~~~fD~  113 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL-------GRRFSA  113 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC-------SCCEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc-------cCCcCE
Confidence            4579999999999999999876   3689999999999999988753      58999999976421       479999


Q ss_pred             EEEcC-Cccc------cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          199 AFVDA-EKRM------YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       199 V~id~-~~~~------~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |++.. ...+      ...+++.+.++   |+|||+++++....
T Consensus       114 v~~~~~~l~~~~~~~~~~~~l~~~~~~---L~pgG~l~i~~~~~  154 (263)
T 3pfg_A          114 VTCMFSSIGHLAGQAELDAALERFAAH---VLPDGVVVVEPWWF  154 (263)
T ss_dssp             EEECTTGGGGSCHHHHHHHHHHHHHHT---EEEEEEEEECCCCC
T ss_pred             EEEcCchhhhcCCHHHHHHHHHHHHHh---cCCCcEEEEEeccC
Confidence            99986 4333      33456666666   99999999986543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.39  E-value=4.1e-12  Score=116.02  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=89.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh---------------CCCCcEEEEEcchhhH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---------------GVSHKVKIKHGLAADS  183 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------------g~~~~v~~~~gd~~~~  183 (282)
                      ++.+|||+|||+|..++.++...+ ..+|+++|+++++++.+++|++.+               ++.+ ++++++|+.+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHH
Confidence            678999999999999999999876 568999999999999999999999               8765 99999999887


Q ss_pred             HHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +...     .++||+|++|+. .....+++.+.+.   |++||++++..
T Consensus       125 ~~~~-----~~~fD~I~lDP~-~~~~~~l~~a~~~---lk~gG~l~vt~  164 (378)
T 2dul_A          125 MAER-----HRYFHFIDLDPF-GSPMEFLDTALRS---AKRRGILGVTA  164 (378)
T ss_dssp             HHHS-----TTCEEEEEECCS-SCCHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             HHhc-----cCCCCEEEeCCC-CCHHHHHHHHHHh---cCCCCEEEEEe
Confidence            6543     368999999874 3446788888888   99999998864

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.39  E-value=1.4e-12  Score=118.69  Aligned_cols=105  Identities=18%  Similarity=0.219  Sum_probs=84.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++++|||||||+|..++.+|++.  ..+|++||.++ +++.|++.++.+|+.++|+++++++.+..  +     +++
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--l-----pe~  149 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--L-----PEQ  149 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSC
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec--C-----Ccc
Confidence            34578899999999999999888753  25899999986 88999999999999999999999997652  2     579


Q ss_pred             eeEEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|+|+...-      ......++....++   |+|||+++.+..
T Consensus       150 ~DvivsE~~~~~l~~e~~l~~~l~a~~r~---Lkp~G~~iP~~a  190 (376)
T 4hc4_A          150 VDAIVSEWMGYGLLHESMLSSVLHARTKW---LKEGGLLLPASA  190 (376)
T ss_dssp             EEEEECCCCBTTBTTTCSHHHHHHHHHHH---EEEEEEEESCEE
T ss_pred             ccEEEeecccccccccchhhhHHHHHHhh---CCCCceECCccc
Confidence            999997422      22455666667777   999999887644

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.39  E-value=1.3e-12  Score=112.37  Aligned_cols=101  Identities=23%  Similarity=0.217  Sum_probs=81.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++  .+...+++++++|+.+..  +    .+++|
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~--~----~~~~f  105 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIP--L----PDESV  105 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCC--S----CTTCE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCC--C----CCCCe
Confidence            356789999999999999999975   479999999999999999987  233456999999986532  1    14789


Q ss_pred             eEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+|++....+   +....++.+.++   |+|||.+++.
T Consensus       106 D~v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~~~  140 (263)
T 2yqz_A          106 HGVIVVHLWHLVPDWPKVLAEAIRV---LKPGGALLEG  140 (263)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             eEEEECCchhhcCCHHHHHHHHHHH---CCCCcEEEEE
Confidence            9999987644   346678888888   9999999986

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.39  E-value=8.1e-13  Score=110.39  Aligned_cols=98  Identities=14%  Similarity=0.174  Sum_probs=79.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++       +++++.+|+.+..  .     .++|
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~-----~~~f  103 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--A-----IDAY  103 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--C-----CSCE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--C-----CCcE
Confidence            456789999999999999999986   479999999999999999887       3677888886543  1     6899


Q ss_pred             eEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+|++.....+     ...+++.+.++   |+|||++++....
T Consensus       104 D~v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~~~  143 (211)
T 3e23_A          104 DAVWAHACLLHVPRDELADVLKLIWRA---LKPGGLFYASYKS  143 (211)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEC
T ss_pred             EEEEecCchhhcCHHHHHHHHHHHHHh---cCCCcEEEEEEcC
Confidence            99999876443     44677788887   9999999997443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.38  E-value=2.1e-12  Score=115.83  Aligned_cols=107  Identities=21%  Similarity=0.239  Sum_probs=85.5

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ......++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+..  +    .
T Consensus        32 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~----~  102 (328)
T 1g6q_1           32 QNKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L----P  102 (328)
T ss_dssp             HHHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C----S
T ss_pred             hhHhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C----C
Confidence            3344567789999999999999999985 3 3699999999 599999999999999889999999997642  1    1


Q ss_pred             CCceeEEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++||+|+++..      .......+..+.++   |+|||+++.+
T Consensus       103 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~---LkpgG~li~~  144 (328)
T 1g6q_1          103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHY---LVEGGLIFPD  144 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHH---EEEEEEEESC
T ss_pred             CCcccEEEEeCchhhcccHHHHHHHHHHHHhh---cCCCeEEEEe
Confidence            378999998743      22345677777788   9999999854

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.38  E-value=1.7e-12  Score=117.44  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=83.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ....++.+|||||||+|..+..+++. + ..+|+++|+++ +++.++++++.+++.++++++++|+.+..  +     .+
T Consensus        46 l~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~-----~~  115 (348)
T 2y1w_A           46 HTDFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L-----PE  115 (348)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SS
T ss_pred             cccCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--C-----CC
Confidence            34457889999999999999999885 2 46999999996 88999999999999888999999997641  1     36


Q ss_pred             ceeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +||+|++....     +.....+..+.++   |+|||++++.
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~---LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKY---LKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGG---EEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhh---cCCCeEEEEe
Confidence            89999997542     2344555555666   9999999854

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.38  E-value=6.2e-13  Score=114.01  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..++...  ..+|+++|+++.+++.+++++...   .+++++++|+.+..  .    ..++||
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~--~----~~~~fD  160 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT--L----PPNTYD  160 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC--C----CSSCEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCC--C----CCCCeE
Confidence            467899999999999999998875  368999999999999999987643   46999999987631  1    147899


Q ss_pred             EEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          198 FAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       198 lV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|++....++     ...+++.+.++   |+|||++++.+.
T Consensus       161 ~v~~~~~l~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~~  198 (254)
T 1xtp_A          161 LIVIQWTAIYLTDADFVKFFKHCQQA---LTPNGYIFFKEN  198 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHh---cCCCeEEEEEec
Confidence            9999877444     34567777777   999999998764

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.37  E-value=1.3e-12  Score=119.59  Aligned_cols=106  Identities=13%  Similarity=0.157  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc-EEEEEcchhhHHH-HHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK-ALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~-v~~~~gd~~~~l~-~l~~~~~~~~  195 (282)
                      .++.+|||++||+|.+++.+++..+...+|+++|+++.+++.+++|++.+++.++ ++++++|+.+.+. ..     .++
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~-----~~~  125 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW-----GFG  125 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC-----SSC
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh-----CCC
Confidence            3567999999999999999999764126899999999999999999999999887 9999999988765 43     468


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ||+|++|+ ......+++.+.++   |++||+|++..
T Consensus       126 fD~V~lDP-~g~~~~~l~~a~~~---Lk~gGll~~t~  158 (392)
T 3axs_A          126 FDYVDLDP-FGTPVPFIESVALS---MKRGGILSLTA  158 (392)
T ss_dssp             EEEEEECC-SSCCHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             CcEEEECC-CcCHHHHHHHHHHH---hCCCCEEEEEe
Confidence            99999998 34445788888888   99999998854

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.37  E-value=2.5e-12  Score=114.12  Aligned_cols=110  Identities=14%  Similarity=0.135  Sum_probs=78.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-----cEEEEEcchhhH--HHHHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADS--LKALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-----~v~~~~gd~~~~--l~~l~~~~  191 (282)
                      ++.+|||||||+|..+..++..-  .++|+|+|+|+++++.|++.....+...     ++++.++|....  ...+....
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            46799999999998666555431  4799999999999999999988766432     267877776211  01221111


Q ss_pred             CCCceeEEEEcCCc------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          192 EASSYDFAFVDAEK------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       192 ~~~~fDlV~id~~~------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..++||+|++....      .+....++.+.++   |||||++++...
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~---LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSEL---TASGGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHH---cCCCCEEEEEeC
Confidence            24799999975432      3446788888888   999999998754

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.37  E-value=4.1e-13  Score=115.66  Aligned_cols=98  Identities=19%  Similarity=0.204  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHhhc-----CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          105 PDQAQLLAMLVQIL-----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       105 ~~~~~ll~~l~~~~-----~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      +....++..++...     ++.+|||+|||+|..+..++...+ +++|+++|+++.+++.|+++++.+++.++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            44555555555432     467999999999999999998765 589999999999999999999999998889999999


Q ss_pred             hhh-HHHHHHhCCCCCceeEEEEcCC
Q 023411          180 AAD-SLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       180 ~~~-~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      +.+ ....+... ..++||+|+++.+
T Consensus       125 ~~~~~~~~~~~~-~~~~fD~i~~npp  149 (254)
T 2h00_A          125 QKTLLMDALKEE-SEIIYDFCMCNPP  149 (254)
T ss_dssp             TTCSSTTTSTTC-CSCCBSEEEECCC
T ss_pred             hhhhhhhhhhcc-cCCcccEEEECCC
Confidence            765 22112100 0158999999865

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.37  E-value=1.9e-12  Score=115.98  Aligned_cols=104  Identities=18%  Similarity=0.124  Sum_probs=87.9

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      .+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|..+.   .     .++||+|+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~-----~~~~D~v~  238 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V-----PSNGDIYL  238 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C-----CSSCSEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C-----CCCCCEEE
Confidence            8999999999999999999986 689999999 999999999998888878899999998762   2     46799999


Q ss_pred             EcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          201 VDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       201 id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +....+++     ...++.+.+.   |+|||.+++.+...+.
T Consensus       239 ~~~vl~~~~~~~~~~~l~~~~~~---L~pgG~l~i~e~~~~~  277 (334)
T 2ip2_A          239 LSRIIGDLDEAASLRLLGNCREA---MAGDGRVVVIERTISA  277 (334)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHHH---SCTTCEEEEEECCBCS
T ss_pred             EchhccCCCHHHHHHHHHHHHHh---cCCCCEEEEEEeccCC
Confidence            98775432     3567777777   9999999988776554

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=1.3e-12  Score=114.15  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=82.7

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ..+...++.+|||||||+|.++..++.  + +++|+++|+++.+++.++++.      .+++++++|+.+..  .     
T Consensus        51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--~-----  114 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFR--V-----  114 (279)
T ss_dssp             HHHCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCC--C-----
T ss_pred             HHhCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCC--c-----
Confidence            444556778999999999999999998  3 689999999999999998765      35899999987632  1     


Q ss_pred             CCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          193 ASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       193 ~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .++||+|++....   .+....++.+.++   |+|||.+++...
T Consensus       115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~---LkpgG~l~~~~~  155 (279)
T 3ccf_A          115 DKPLDAVFSNAMLHWVKEPEAAIASIHQA---LKSGGRFVAEFG  155 (279)
T ss_dssp             SSCEEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             CCCcCEEEEcchhhhCcCHHHHHHHHHHh---cCCCcEEEEEec
Confidence            4789999998764   3456678888888   999999998644

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.37  E-value=5.1e-13  Score=117.90  Aligned_cols=103  Identities=10%  Similarity=0.117  Sum_probs=82.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC--CcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...+..  .+++++++|+.+...       .++|
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~f  151 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-------DKRF  151 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-------SCCE
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-------CCCc
Confidence            3459999999999999999986   468999999999999999999876542  569999999976421       4799


Q ss_pred             eEEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+|++...      ......+++.+.++   |+|||+|++....
T Consensus       152 D~v~~~~~~~~~~~~~~~~~~l~~~~~~---L~pgG~l~~~~~~  192 (299)
T 3g2m_A          152 GTVVISSGSINELDEADRRGLYASVREH---LEPGGKFLLSLAM  192 (299)
T ss_dssp             EEEEECHHHHTTSCHHHHHHHHHHHHHH---EEEEEEEEEEEEC
T ss_pred             CEEEECCcccccCCHHHHHHHHHHHHHH---cCCCcEEEEEeec
Confidence            99986422      12346678888888   9999999997554

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.37  E-value=9.3e-13  Score=111.26  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=84.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC----CcEEEEEcchhhHHHHHHhCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++....++.    .+++++++|+.+.. .     ..
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-----~~   99 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-F-----HD   99 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC-S-----CT
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC-C-----CC
Confidence            46789999999999999999986   479999999999999999998877763    36899999987532 1     15


Q ss_pred             CceeEEEEcCCcccc---H---HHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMY---Q---EYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~---~---~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ++||+|++.....+.   .   .+++.+.++   |+|||++++.+.
T Consensus       100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~---L~pgG~l~~~~~  142 (235)
T 3sm3_A          100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRV---LKPGAYLYLVEF  142 (235)
T ss_dssp             TCEEEEEEESCGGGCCCHHHHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             CceeEEEEcchhhcCCCHHHHHHHHHHHHHH---cCCCeEEEEEEC
Confidence            789999998764332   2   678888888   999999998754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.37  E-value=2.6e-12  Score=107.83  Aligned_cols=108  Identities=17%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +.......++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++       .+++++.++..+.....  .
T Consensus        44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~--~  111 (227)
T 3e8s_A           44 ILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAK--V  111 (227)
T ss_dssp             HHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTC--S
T ss_pred             HHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccc--c
Confidence            333444556789999999999999999986   46999999999999998876       34788888886542110  0


Q ss_pred             CCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          191 GEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ....+||+|++...  ..+...+++.+.++   |+|||++++...
T Consensus       112 ~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~---L~pgG~l~~~~~  153 (227)
T 3e8s_A          112 PVGKDYDLICANFALLHQDIIELLSAMRTL---LVPGGALVIQTL  153 (227)
T ss_dssp             CCCCCEEEEEEESCCCSSCCHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             ccCCCccEEEECchhhhhhHHHHHHHHHHH---hCCCeEEEEEec
Confidence            11356999998765  44566788888888   999999999765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.36  E-value=2.5e-12  Score=116.43  Aligned_cols=106  Identities=20%  Similarity=0.223  Sum_probs=87.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++++...++.++++++.+|+.+.+        ...
T Consensus       180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~  249 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------PRK  249 (360)
T ss_dssp             CCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SSC
T ss_pred             CCccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC--------CCC
Confidence            345678999999999999999999886 689999999 9999999999999998888999999987532        245


Q ss_pred             eeEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          196 YDFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       196 fDlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ||+|++....+++     ...++.+.+.   |+|||.+++.+..
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~---L~pgG~l~i~e~~  290 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEA---LEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHT---EEEEEEEEEEECC
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHh---cCCCcEEEEEEEe
Confidence            9999997765432     3466777776   9999998887665

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.36  E-value=2e-12  Score=117.54  Aligned_cols=104  Identities=19%  Similarity=0.202  Sum_probs=87.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++++...++.++++++.+|+.+.+        ...|
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  249 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------PVTA  249 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SCCE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC--------CCCC
Confidence            45678999999999999999999986 689999999 9999999999999998888999999987522        2459


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+|++....+++     ...++.+.+.   |+|||.+++.+.
T Consensus       250 D~v~~~~vl~~~~~~~~~~~l~~~~~~---L~pgG~l~i~e~  288 (374)
T 1qzz_A          250 DVVLLSFVLLNWSDEDALTILRGCVRA---LEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEC
T ss_pred             CEEEEeccccCCCHHHHHHHHHHHHHh---cCCCcEEEEEec
Confidence            999998765432     3567777777   999998887666

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.36  E-value=5.3e-13  Score=113.47  Aligned_cols=103  Identities=12%  Similarity=0.040  Sum_probs=78.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecC-ccHHHHH---HHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVA---KKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s-~~~~~~a---~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+| +.+++.|   +++....++. +++++++|+.+.....     .
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~-----~   95 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFEL-----K   95 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGG-----T
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhc-----c
Confidence            4667999999999999999997654 7899999999 6666665   7777777776 4999999997652111     3


Q ss_pred             CceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          194 SSYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       194 ~~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +.+|.|++.....        .....+..+.++   |||||.+++
T Consensus        96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~---LkpGG~l~i  137 (225)
T 3p2e_A           96 NIADSISILFPWGTLLEYVIKPNRDILSNVADL---AKKEAHFEF  137 (225)
T ss_dssp             TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTT---EEEEEEEEE
T ss_pred             CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHh---cCCCcEEEE
Confidence            6788887754321        234567777777   999999998

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.36  E-value=3.3e-12  Score=114.92  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|.+++. ++  + ..+|+++|+++.+++.++++++.+++.++++++++|+.+.+         ++||
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---------~~fD  260 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---------VKGN  260 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---------CCEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---------CCCc
Confidence            4788999999999999999 76  2 57999999999999999999999999778999999998652         6899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      +|++|.+.. ...+++.+.++   |+|||++++.....
T Consensus       261 ~Vi~dpP~~-~~~~l~~~~~~---L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          261 RVIMNLPKF-AHKFIDKALDI---VEEGGVIHYYTIGK  294 (336)
T ss_dssp             EEEECCTTT-GGGGHHHHHHH---EEEEEEEEEEEEES
T ss_pred             EEEECCcHh-HHHHHHHHHHH---cCCCCEEEEEEeec
Confidence            999986533 33678888888   99999998865543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.35  E-value=2.2e-12  Score=103.93  Aligned_cols=102  Identities=12%  Similarity=0.058  Sum_probs=81.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ....++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++      ..+++++.+| ...        ..+
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~~~--------~~~   74 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-KEI--------PDN   74 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-GGS--------CTT
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-CCC--------CCC
Confidence            345677799999999999999999864   4999999999999999887      2369999988 211        157


Q ss_pred             ceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          195 SYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       195 ~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +||+|++.....   +...+++.+.++   |+|||.+++.+.....
T Consensus        75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~~~~~~~~~  117 (170)
T 3i9f_A           75 SVDFILFANSFHDMDDKQHVISEVKRI---LKDDGRVIIIDWRKEN  117 (170)
T ss_dssp             CEEEEEEESCSTTCSCHHHHHHHHHHH---EEEEEEEEEEEECSSC
T ss_pred             ceEEEEEccchhcccCHHHHHHHHHHh---cCCCCEEEEEEcCccc
Confidence            999999887644   456678888888   9999999998765443

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.35  E-value=6.5e-12  Score=101.85  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             cCHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      ..++...++.. +..  .++.+|||+|||+|..+..+++..    +|+++|+++.+++.          .++++++++|+
T Consensus         6 P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----------~~~~~~~~~d~   70 (170)
T 3q87_B            6 PGEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----------HRGGNLVRADL   70 (170)
T ss_dssp             CCHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----------CSSSCEEECST
T ss_pred             cCccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----------ccCCeEEECCh
Confidence            34555555555 444  577899999999999999998753    99999999999876          34689999999


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCcc------------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~------------~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+..+       .++||+|+++.+..            .....+..+.+.   + |||.+++-.
T Consensus        71 ~~~~~-------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-pgG~l~~~~  123 (170)
T 3q87_B           71 LCSIN-------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDA---V-TVGMLYLLV  123 (170)
T ss_dssp             TTTBC-------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHH---C-CSSEEEEEE
T ss_pred             hhhcc-------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhh---C-CCCEEEEEE
Confidence            76322       37999999986633            234567777777   8 999998854

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.35  E-value=2.6e-12  Score=109.31  Aligned_cols=97  Identities=18%  Similarity=0.177  Sum_probs=78.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||+|||+|..+..+++.    .+++++|+++.+++.++++....+  .+++++++|+.+..  .     .++||+
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--~-----~~~fD~   99 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--L-----PEPVDA   99 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--C-----SSCEEE
T ss_pred             CCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--C-----CCCcCE
Confidence            4579999999999999988875    699999999999999999998766  35899999987642  1     478999


Q ss_pred             EEEcC-Cc------cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDA-EK------RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~-~~------~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |++.. ..      ......++.+.++   |+|||+++++
T Consensus       100 v~~~~~~~~~~~~~~~~~~~l~~~~~~---L~pgG~l~~~  136 (243)
T 3d2l_A          100 ITILCDSLNYLQTEADVKQTFDSAARL---LTDGGKLLFD  136 (243)
T ss_dssp             EEECTTGGGGCCSHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEeCCchhhcCCHHHHHHHHHHHHHh---cCCCeEEEEE
Confidence            99865 32      2344567777777   9999999984

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.35  E-value=2.6e-12  Score=113.07  Aligned_cols=109  Identities=15%  Similarity=0.216  Sum_probs=74.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHH----HCCCCCEE--EEEecCccHHHHHHHHHHHh-CCCCcEE--EEEcchhhHHHHHH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIAL----VLPESGCL--VACERDARSLEVAKKYYERA-GVSHKVK--IKHGLAADSLKALI  188 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~----~~~~~~~v--~~iD~s~~~~~~a~~~~~~~-g~~~~v~--~~~gd~~~~l~~l~  188 (282)
                      .++.+|||||||+|..+..++.    ..+ +.++  +++|+|++|++.|++.+... ++. +++  +..+++.+......
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhc
Confidence            3456999999999987765443    333 4644  99999999999999988754 333 344  45666654332111


Q ss_pred             hCCCCCceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          189 LNGEASSYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ....+++||+|++....++   ....+..+.++   |||||.+++-
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~---LkpgG~l~i~  171 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSL---LGTNAKMLII  171 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHT---EEEEEEEEEE
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHH---cCCCcEEEEE
Confidence            0011578999999877444   45567777777   9999999885

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.34  E-value=1.1e-12  Score=111.13  Aligned_cols=93  Identities=12%  Similarity=0.070  Sum_probs=75.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++      ..+++++++|+.+.++..    ..++||
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~----~~~~fD  113 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAG----LGAPFG  113 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTT----CCCCEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCc----CCCCEE
Confidence            56789999999999999999986   47999999999999999887      235899999986433210    037899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      +|++...   ....++.+.++   |||||.++
T Consensus       114 ~v~~~~~---~~~~l~~~~~~---LkpgG~l~  139 (226)
T 3m33_A          114 LIVSRRG---PTSVILRLPEL---AAPDAHFL  139 (226)
T ss_dssp             EEEEESC---CSGGGGGHHHH---EEEEEEEE
T ss_pred             EEEeCCC---HHHHHHHHHHH---cCCCcEEE
Confidence            9999743   34557788888   99999999

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.34  E-value=2e-12  Score=109.99  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=84.2

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      .+..++...++.+|||||||+|..+..+++. + ..+|+++|+++.+++.++++...    .+++++++|+.+..  .  
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~--  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH--L--  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC--C--
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc--C--
Confidence            3445555557789999999999999999986 2 23999999999999999887642    36999999987632  1  


Q ss_pred             CCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          190 NGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                        ..++||+|++....+   +....++.+.++   |+|||.+++..
T Consensus       104 --~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~~~~  144 (243)
T 3bkw_A          104 --PQDSFDLAYSSLALHYVEDVARLFRTVHQA---LSPGGHFVFST  144 (243)
T ss_dssp             --CTTCEEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             --CCCCceEEEEeccccccchHHHHHHHHHHh---cCcCcEEEEEe
Confidence              147899999987643   346678888888   99999999864

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=6.7e-12  Score=107.18  Aligned_cols=107  Identities=10%  Similarity=0.043  Sum_probs=81.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++..+   +|+++|+++.+++.++++..    ..+++++++|+.+......-. ....|
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~-~~~~~  125 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIH-SEIGD  125 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHH-HHHCS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccc-cccCc
Confidence            35667999999999999999999754   89999999999999998762    236999999997743221000 01359


Q ss_pred             eEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+|++....+     ....+++.+.++   |+|||++++-+..
T Consensus       126 d~v~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~~~  165 (245)
T 3ggd_A          126 ANIYMRTGFHHIPVEKRELLGQSLRIL---LGKQGAMYLIELG  165 (245)
T ss_dssp             CEEEEESSSTTSCGGGHHHHHHHHHHH---HTTTCEEEEEEEC
T ss_pred             cEEEEcchhhcCCHHHHHHHHHHHHHH---cCCCCEEEEEeCC
Confidence            9999876533     345788888888   9999987776554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.34  E-value=1.9e-12  Score=116.83  Aligned_cols=107  Identities=18%  Similarity=0.206  Sum_probs=83.9

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +.......++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++..+++.  ++++.+|..+..      
T Consensus       188 ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~------  258 (343)
T 2pjd_A          188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV------  258 (343)
T ss_dssp             HHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC------
T ss_pred             HHHhcCcCCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc------
Confidence            33333334567999999999999999999875 579999999999999999999988875  577888886532      


Q ss_pred             CCCCceeEEEEcCCccc--------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKRM--------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~--------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                        .++||+|+++...+.        ...+++.+.++   |+|||.+++-
T Consensus       259 --~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~---LkpgG~l~i~  302 (343)
T 2pjd_A          259 --KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRH---LNSGGELRIV  302 (343)
T ss_dssp             --CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGG---EEEEEEEEEE
T ss_pred             --cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHh---CCCCcEEEEE
Confidence              478999999876432        24456666666   9999998874

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.34  E-value=9.7e-13  Score=110.56  Aligned_cols=104  Identities=16%  Similarity=0.130  Sum_probs=76.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHH----HHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY----YERAGVSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~----~~~~g~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      ...++.+|||||||+|..+..+++..| +++|+++|+++++++.+.+.    ....++. +++++++|+.+. +..    
T Consensus        24 ~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l-~~~----   96 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERL-PPL----   96 (218)
T ss_dssp             HTTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTC-CSC----
T ss_pred             hccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhC-CCC----
Confidence            345678999999999999999999876 78999999999988864333    3334544 599999999763 211    


Q ss_pred             CCCceeEEEEcCCc--------cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          192 EASSYDFAFVDAEK--------RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       192 ~~~~fDlV~id~~~--------~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                       .+. |.|++....        .+...+++.+.++   |||||.+++.
T Consensus        97 -~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~  139 (218)
T 3mq2_A           97 -SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAV---CRPGASFLVA  139 (218)
T ss_dssp             -CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHT---EEEEEEEEEE
T ss_pred             -CCC-CEEEEEccchhhhhhhhccHHHHHHHHHHH---cCCCcEEEEE
Confidence             344 777654321        1225678888888   9999999984

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.33  E-value=5.6e-12  Score=109.68  Aligned_cols=165  Identities=12%  Similarity=0.069  Sum_probs=103.6

Q ss_pred             CCChhHHHHHHhccCChHHHHHHHHHHHc-cCCCCCccCHHHHHHHHHHHh----hcCCCEEEEEcccc--cHHHHHHHH
Q 023411           67 SVTPPLYDYILRNVREPEILRQLREETAG-MRGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYT--GYSSLAIAL  139 (282)
Q Consensus        67 ~~~~~l~~y~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~--G~~t~~la~  139 (282)
                      +..-++++|+.......+.=++.-+...+ .|. ...+......++...++    .....+|||||||+  +..+..+++
T Consensus        22 p~~aR~yd~~LgGk~n~~~Dr~~~~~~~~~~P~-~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~  100 (277)
T 3giw_A           22 AHSARIYDYIIGGKDYYPADKEAGDAMSREWPA-LPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQ  100 (277)
T ss_dssp             CCHHHHHHHHTTCSCCCHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHH
T ss_pred             CCcchhheeecCCccCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHH
Confidence            45568999999876655555444444432 221 11222233344444433    34567999999997  555666666


Q ss_pred             HCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee-----EEEEcCCccc------c
Q 023411          140 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD-----FAFVDAEKRM------Y  208 (282)
Q Consensus       140 ~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD-----lV~id~~~~~------~  208 (282)
                      ...++++|+++|.|+.|++.|++.+...+ ..+++++++|+.+....+......+.||     .|++....+.      .
T Consensus       101 ~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p  179 (277)
T 3giw_A          101 SVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDA  179 (277)
T ss_dssp             HHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCH
T ss_pred             HHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhH
Confidence            54348999999999999999999886443 2469999999987532110000013454     4666655332      2


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          209 QEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       209 ~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      ...+..+.+.   |+|||+|++.....+
T Consensus       180 ~~~l~~l~~~---L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          180 VGIVRRLLEP---LPSGSYLAMSIGTAE  204 (277)
T ss_dssp             HHHHHHHHTT---SCTTCEEEEEEECCT
T ss_pred             HHHHHHHHHh---CCCCcEEEEEeccCC
Confidence            3456666666   999999999876543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=1.3e-12  Score=113.01  Aligned_cols=110  Identities=19%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      .+.....+...+...++.+|||||||+|.++..+++   ++++|+++|+++.+++.++++.       +++++++|+.+.
T Consensus        19 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~   88 (261)
T 3ege_A           19 DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL   88 (261)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC
T ss_pred             cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC
Confidence            334444455555556788999999999999999997   2689999999999887765543       599999999653


Q ss_pred             HHHHHhCCCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          184 LKALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                       +.     ..++||+|++....   .+....++.+.++   || ||.+++.+.
T Consensus        89 -~~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~---Lk-gG~~~~~~~  131 (261)
T 3ege_A           89 -AL-----PDKSVDGVISILAIHHFSHLEKSFQEMQRI---IR-DGTIVLLTF  131 (261)
T ss_dssp             -CS-----CTTCBSEEEEESCGGGCSSHHHHHHHHHHH---BC-SSCEEEEEE
T ss_pred             -CC-----CCCCEeEEEEcchHhhccCHHHHHHHHHHH---hC-CcEEEEEEc
Confidence             21     14799999998764   3456778888888   99 997766554

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.32  E-value=4.7e-12  Score=101.75  Aligned_cols=102  Identities=19%  Similarity=0.215  Sum_probs=75.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HHHhCCCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK--ALILNGEAS  194 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~--~l~~~~~~~  194 (282)
                      ..++.+|||+|||+|..+..+++.++++.+++++|+++ +++.           .+++++++|+.+...  .+......+
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCC
Confidence            45678999999999999999999864468999999999 6532           469999999876420  110000147


Q ss_pred             ceeEEEEcCCccc---c-----------HHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEKRM---Y-----------QEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~~~---~-----------~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +||+|+++.....   .           ...++.+.++   |+|||.+++...
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---L~~gG~l~~~~~  137 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDV---LAPGGSFVVKVF  137 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHH---cCCCcEEEEEEe
Confidence            8999999765321   1           4677788888   999999998543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.32  E-value=1.5e-11  Score=113.93  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=91.1

Q ss_pred             CCCCccCHHHHHHHHH-HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE
Q 023411           98 GSQMQVSPDQAQLLAM-LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~-l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~  176 (282)
                      .+..+.++...+.+.. +....++.+|||+|||+|.+++.+++.   ..+|+++|+++++++.|+++++.+++.  ++++
T Consensus       268 ~~F~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~  342 (425)
T 2jjq_A          268 NSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFE  342 (425)
T ss_dssp             TSCCCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEE
T ss_pred             ccccccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEE
Confidence            3445555555444333 333567789999999999999999985   469999999999999999999999886  9999


Q ss_pred             EcchhhHHHHHHhCCCCCceeEEEEcCCcccc-HHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          177 HGLAADSLKALILNGEASSYDFAFVDAEKRMY-QEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       177 ~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~-~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ++|+.+.+        ..+||+|++|.+.... ...++.+. .   |+|||++++..
T Consensus       343 ~~d~~~~~--------~~~fD~Vv~dPPr~g~~~~~~~~l~-~---l~p~givyvsc  387 (425)
T 2jjq_A          343 VASDREVS--------VKGFDTVIVDPPRAGLHPRLVKRLN-R---EKPGVIVYVSC  387 (425)
T ss_dssp             ECCTTTCC--------CTTCSEEEECCCTTCSCHHHHHHHH-H---HCCSEEEEEES
T ss_pred             ECChHHcC--------ccCCCEEEEcCCccchHHHHHHHHH-h---cCCCcEEEEEC
Confidence            99998753        2389999999885443 34566665 3   79999999863

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.31  E-value=1.1e-11  Score=112.97  Aligned_cols=117  Identities=23%  Similarity=0.249  Sum_probs=92.7

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+.+..+..+..++ ..++.+|||+|||+|.+++.++...+ .++|+|+|+++.+++.|++++..+|+.++++++++|+.
T Consensus       201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~  278 (373)
T 3tm4_A          201 HLKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDAT  278 (373)
T ss_dssp             CCCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGG
T ss_pred             CccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            45666777777777 77888999999999999999998754 46899999999999999999999999778999999998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCcc-------c----cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKR-------M----YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~-------~----~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +....      .++||+|+++.+..       .    +..+++.+.++   | +|+.+++
T Consensus       279 ~~~~~------~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~---l-~g~~~~i  328 (373)
T 3tm4_A          279 QLSQY------VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKV---L-EKRGVFI  328 (373)
T ss_dssp             GGGGT------CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHH---E-EEEEEEE
T ss_pred             hCCcc------cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHH---c-CCeEEEE
Confidence            75321      47899999987622       1    35566777777   8 4444444

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.31  E-value=4.9e-11  Score=99.16  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=84.2

Q ss_pred             cCHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          103 VSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       103 ~~~~~~~ll~~l~~---~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      ..+.....+...+.   ..++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.++++++..++  +++++++|
T Consensus        30 ~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d  105 (207)
T 1wy7_A           30 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGD  105 (207)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESC
T ss_pred             CchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECc
Confidence            34444444444333   3467899999999999999999862  35899999999999999999998887  59999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +.+.         .++||+|+++.+.     .....+++.+.++   +  |+++++.
T Consensus       106 ~~~~---------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~---l--~~~~~~~  148 (207)
T 1wy7_A          106 VSEF---------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEI---S--DVVYSIH  148 (207)
T ss_dssp             GGGC---------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHH---C--SEEEEEE
T ss_pred             hHHc---------CCCCCEEEEcCCCccccCCchHHHHHHHHHh---c--CcEEEEE
Confidence            9763         3589999999773     2345678888887   7  6655543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.31  E-value=3.9e-12  Score=119.68  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=80.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++.+++.++++++++|+.+..  +     .++|
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~-----~~~f  225 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L-----PEQV  225 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSCE
T ss_pred             hcCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--c-----CCCe
Confidence            346789999999999999999874 3 46999999998 99999999999999888999999997631  1     3689


Q ss_pred             eEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |+|+++...     +.....+..+.++   |+|||++++
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~---LkpgG~li~  261 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKY---LKPSGNMFP  261 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGG---EEEEEEEES
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHh---cCCCCEEEE
Confidence            999997652     2223334444455   999999985

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.31  E-value=3.3e-12  Score=108.64  Aligned_cols=101  Identities=10%  Similarity=0.100  Sum_probs=81.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..++..   +.+|+++|+++.+++.++++.    ...+++++++|+.+..  .    ..++||
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~--~----~~~~fD  118 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP--F----ENEQFE  118 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS--S----CTTCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC--C----CCCCcc
Confidence            36779999999999999999986   479999999999999988764    2356999999987642  1    157999


Q ss_pred             EEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|++....+   +....++.+.++   |+|||++++....
T Consensus       119 ~v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~i~~~~  155 (242)
T 3l8d_A          119 AIMAINSLEWTEEPLRALNEIKRV---LKSDGYACIAILG  155 (242)
T ss_dssp             EEEEESCTTSSSCHHHHHHHHHHH---EEEEEEEEEEEEC
T ss_pred             EEEEcChHhhccCHHHHHHHHHHH---hCCCeEEEEEEcC
Confidence            999876643   445678888888   9999999997643

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.31  E-value=1.6e-11  Score=107.62  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=75.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec-CccHHHHHHHHH-----HHhCCC----CcEEEEEcchhhHHHHH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYY-----ERAGVS----HKVKIKHGLAADSLKAL  187 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~-----~~~g~~----~~v~~~~gd~~~~l~~l  187 (282)
                      .++++|||+|||+|..++.+++. + ..+|+++|+ ++++++.+++++     +.+++.    ++++++..+..+....+
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            46779999999999999998875 2 359999999 899999999999     555554    46888865543321111


Q ss_pred             HhCCCCCceeEEEE-cCC--ccccHHHHHHHHHhhcCCC---C--CcEEEE
Q 023411          188 ILNGEASSYDFAFV-DAE--KRMYQEYFELLLQLLLQIR---V--GGIIVI  230 (282)
Q Consensus       188 ~~~~~~~~fDlV~i-d~~--~~~~~~~l~~~~~~~~~Lk---p--gG~lv~  230 (282)
                      ......++||+|++ |..  ......+++.+.++   |+   |  ||.+++
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~---Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQAHDALLRSVKML---LALPANDPTAVALV  203 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHH---BCCTTTCTTCEEEE
T ss_pred             HhhccCCCCCEEEEeCcccChHHHHHHHHHHHHH---hcccCCCCCCEEEE
Confidence            10000478999997 433  33466788888888   99   9  997655

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.31  E-value=4.7e-12  Score=109.87  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=74.5

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +...+...++.+|||||||+|..+..+++.   +++|+++|+|+.+++.+++++....  -...+...+.. .....   
T Consensus        37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~-~~~~~---  107 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAE-IPKEL---  107 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSC-CCGGG---
T ss_pred             HHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccc-ccccc---
Confidence            333445567789999999999999999985   4799999999999999999876431  11222222210 00111   


Q ss_pred             CCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                        .++||+|+++...++     ....+..+.++   | |||.+++.
T Consensus       108 --~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~l---L-PGG~l~lS  147 (261)
T 3iv6_A          108 --AGHFDFVLNDRLINRFTTEEARRACLGMLSL---V-GSGTVRAS  147 (261)
T ss_dssp             --TTCCSEEEEESCGGGSCHHHHHHHHHHHHHH---H-TTSEEEEE
T ss_pred             --CCCccEEEEhhhhHhCCHHHHHHHHHHHHHh---C-cCcEEEEE
Confidence              478999999876443     34466677777   9 99999986

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.31  E-value=5.9e-12  Score=114.85  Aligned_cols=102  Identities=12%  Similarity=0.080  Sum_probs=82.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH-HHhCCCCCcee
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA-LILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~-l~~~~~~~~fD  197 (282)
                      ++++|||+| |+|.+++.++...+ .++|+++|+++.+++.|+++++.+|+. +++++++|+.+.++. .     .++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~-----~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYA-----LHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTT-----SSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhc-----cCCcc
Confidence            578999999 99999999998754 579999999999999999999999987 799999999763321 1     36899


Q ss_pred             EEEEcCCcc--ccHHHHHHHHHhhcCCCCCc-EEEEe
Q 023411          198 FAFVDAEKR--MYQEYFELLLQLLLQIRVGG-IIVID  231 (282)
Q Consensus       198 lV~id~~~~--~~~~~l~~~~~~~~~LkpgG-~lv~d  231 (282)
                      +|++|.+..  ....+++.+.+.   |+||| ++++.
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~---LkpgG~~~~~~  277 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIAT---LKGPRCAGYFG  277 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHT---BCSTTCEEEEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHH---cccCCeEEEEE
Confidence            999997632  235566777777   99999 44554

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.30  E-value=2e-11  Score=111.12  Aligned_cols=124  Identities=17%  Similarity=0.062  Sum_probs=89.5

Q ss_pred             CCCCccCHHHHHHHHH-HHhhc--CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411           98 GSQMQVSPDQAQLLAM-LVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  174 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~-l~~~~--~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (282)
                      .+..++++.....+.. +....  .+.+|||+|||+|.+++.+++.   ..+|+++|+++++++.|+++++.+++. +++
T Consensus       189 ~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~  264 (369)
T 3bt7_A          189 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHID-NVQ  264 (369)
T ss_dssp             TSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCC-SEE
T ss_pred             CCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ceE
Confidence            3445556665444433 33322  3578999999999999999875   369999999999999999999999985 699


Q ss_pred             EEEcchhhHHHHHHhCCC----------CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          175 IKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       175 ~~~gd~~~~l~~l~~~~~----------~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++++|+.+.++.+.....          ..+||+|++|++....   ...+.+.   |+++|.++.-
T Consensus       265 ~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~---l~~~g~ivyv  325 (369)
T 3bt7_A          265 IIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---DSETEKM---VQAYPRILYI  325 (369)
T ss_dssp             EECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---CHHHHHH---HTTSSEEEEE
T ss_pred             EEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcccc---HHHHHHH---HhCCCEEEEE
Confidence            999999887765531100          0379999999875432   2345555   6778777663

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.30  E-value=8.2e-13  Score=113.85  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=79.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC----------------------------
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----------------------------  169 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----------------------------  169 (282)
                      .++.+|||||||+|..+..++....  .+|+++|+++.+++.+++++...+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4567999999999999998887532  4899999999999999988764321                            


Q ss_pred             CCcE-EEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc----c---cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          170 SHKV-KIKHGLAADSLKALILNGEASSYDFAFVDAEKR----M---YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       170 ~~~v-~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~----~---~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ..++ +++++|+.+..+..  ....++||+|++....+    +   ....++.+.++   |+|||++++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~---LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLG--GVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSL---LKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTT--TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTT---EEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCCC--ccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhh---CCCCcEEEEEecC
Confidence            0127 89999987643211  00127899999977644    3   44455555555   9999999997754

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.30  E-value=7.4e-12  Score=106.15  Aligned_cols=99  Identities=14%  Similarity=0.124  Sum_probs=77.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++.      .+++++++|+.+...       .++||
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-------~~~~D  102 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-------GRKFS  102 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-------SSCEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-------CCCCc
Confidence            467899999999999999999874   38999999999999998864      248999999875321       47899


Q ss_pred             EEEEcC-Cc------cccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          198 FAFVDA-EK------RMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       198 lV~id~-~~------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      +|++.. ..      ......++.+.++   |+|||.++++....
T Consensus       103 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~---L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          103 AVVSMFSSVGYLKTTEELGAAVASFAEH---LEPGGVVVVEPWWF  144 (239)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHHT---EEEEEEEEECCCCC
T ss_pred             EEEEcCchHhhcCCHHHHHHHHHHHHHh---cCCCeEEEEEeccC
Confidence            999643 32      2234566667676   99999999986544

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.30  E-value=1.2e-11  Score=109.92  Aligned_cols=108  Identities=11%  Similarity=0.067  Sum_probs=80.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC------CCCcEEEEEcchhhHHH--HHHhC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLAADSLK--ALILN  190 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g------~~~~v~~~~gd~~~~l~--~l~~~  190 (282)
                      ++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++....+      ...+++++++|+.+...  .+.  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--  109 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR--  109 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS--
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc--
Confidence            6679999999999999999874 2 5799999999999999999987653      23469999999876420  010  


Q ss_pred             CCCCceeEEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          191 GEASSYDFAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...++||+|++....+.       ....++.+.++   |+|||++++...
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~---LkpgG~li~~~~  156 (313)
T 3bgv_A          110 DPQMCFDICSCQFVCHYSFESYEQADMMLRNACER---LSPGGYFIGTTP  156 (313)
T ss_dssp             STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTT---EEEEEEEEEEEE
T ss_pred             cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHH---hCCCcEEEEecC
Confidence            00358999999866432       23556666666   999999998644

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.29  E-value=1.2e-11  Score=101.08  Aligned_cols=106  Identities=11%  Similarity=0.134  Sum_probs=81.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      ..++..+  ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++.      +++++++|+.+..  .
T Consensus        37 ~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~  103 (195)
T 3cgg_A           37 ARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVDQ--I  103 (195)
T ss_dssp             HHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTSC--C
T ss_pred             HHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccCC--C
Confidence            3444444  346789999999999999999986   4799999999999999988752      4899999987531  1


Q ss_pred             HhCCCCCceeEEEEc-CCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          188 ILNGEASSYDFAFVD-AEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       188 ~~~~~~~~fDlV~id-~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                          ..++||+|++. ...++     ...+++.+.++   |+|||.+++...
T Consensus       104 ----~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~G~l~~~~~  148 (195)
T 3cgg_A          104 ----SETDFDLIVSAGNVMGFLAEDGREPALANIHRA---LGADGRAVIGFG  148 (195)
T ss_dssp             ----CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             ----CCCceeEEEECCcHHhhcChHHHHHHHHHHHHH---hCCCCEEEEEeC
Confidence                14789999997 33322     35677788888   999999998643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.28  E-value=3.7e-12  Score=106.25  Aligned_cols=96  Identities=18%  Similarity=0.216  Sum_probs=76.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..+..+    + ..+++++|+++.+++.++++.      .+++++++|+.+. + .    ..++||+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~----~~~~fD~   98 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P-F----PGESFDV   98 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C-S----CSSCEEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C-C----CCCcEEE
Confidence            6679999999999988776    2 239999999999999998876      3589999998653 1 1    1478999


Q ss_pred             EEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          199 AFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       199 V~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |++....+   +....++.+.++   |+|||.+++....
T Consensus        99 v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~i~~~~  134 (211)
T 2gs9_A           99 VLLFTTLEFVEDVERVLLEARRV---LRPGGALVVGVLE  134 (211)
T ss_dssp             EEEESCTTTCSCHHHHHHHHHHH---EEEEEEEEEEEEC
T ss_pred             EEEcChhhhcCCHHHHHHHHHHH---cCCCCEEEEEecC
Confidence            99987643   356677888888   9999999997554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.27  E-value=4.7e-11  Score=106.11  Aligned_cols=99  Identities=19%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+......++..++...++.+|||+|||+|+.+..++..++..++|+++|+++.+++.++++++..|+. +++++++|+.
T Consensus        85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~  163 (309)
T 2b9e_A           85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFL  163 (309)
T ss_dssp             EECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGG
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChH
Confidence            344444556666777778899999999999999999998765689999999999999999999999986 4999999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      +..+...   ..++||.|++|++
T Consensus       164 ~~~~~~~---~~~~fD~Vl~D~P  183 (309)
T 2b9e_A          164 AVSPSDP---RYHEVHYILLDPS  183 (309)
T ss_dssp             GSCTTCG---GGTTEEEEEECCC
T ss_pred             hcCcccc---ccCCCCEEEEcCC
Confidence            6432110   0157999999865

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.27  E-value=1.2e-12  Score=113.58  Aligned_cols=113  Identities=15%  Similarity=0.068  Sum_probs=75.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC----------------------------
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----------------------------  169 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----------------------------  169 (282)
                      .++.+|||||||+|..+..++...  ..+|+|+|+|+.+++.|+++++....                            
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            356799999999998777655431  13799999999999999988754310                            


Q ss_pred             CCcEE-EEEcchhhHHHHHHhCCCCCceeEEEEcCCccc----cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          170 SHKVK-IKHGLAADSLKALILNGEASSYDFAFVDAEKRM----YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       170 ~~~v~-~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~----~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ..+++ ++++|..+..+..  ....++||+|++....++    ..++...+.+++++|||||.+++.+..
T Consensus       132 ~~~i~~~~~~D~~~~~~~~--~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLA--PAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTT--TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCCCC--ccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence            11243 8888887632110  001468999998755332    233334444444449999999998654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.25  E-value=8.8e-12  Score=109.36  Aligned_cols=111  Identities=11%  Similarity=0.041  Sum_probs=72.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-----------------CCC-----------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----------------GVS-----------  170 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-----------------g~~-----------  170 (282)
                      ++.+|||||||+|..+..++.. + ..+|+++|+|+.+++.|+++++..                 +..           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            6789999999999955444432 2 469999999999999998865421                 110           


Q ss_pred             -CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          171 -HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       171 -~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                       ..++++.+|+.+.++.-......++||+|++....+.       ....++.+.++   |||||++++.+.+
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~---LkpGG~l~~~~~~  217 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTL---LRPGGHLLLIGAL  217 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTT---EEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHh---cCCCCEEEEEEec
Confidence             0156777787652221000011367999999876443       34455555555   9999999997543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.25  E-value=4.4e-12  Score=105.60  Aligned_cols=102  Identities=9%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++..+  .+++++|+++.+++.++++...   ..+++++++|+.+. + +    ..++||
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~----~~~~fD  109 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-F----PSASFD  109 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-S----CSSCEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-C----CCCccc
Confidence            4677999999999999999998643  3899999999999999988763   24699999998764 1 1    147899


Q ss_pred             EEEEcCCc------------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          198 FAFVDAEK------------------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       198 lV~id~~~------------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|++....                  ......++.+.++   |+|||.+++...
T Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~li~~~~  160 (215)
T 2pxx_A          110 VVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRV---LVPGGRFISMTS  160 (215)
T ss_dssp             EEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHH---EEEEEEEEEEES
T ss_pred             EEEECcchhhhccccccccccccchhHHHHHHHHHHHHh---CcCCCEEEEEeC
Confidence            99986442                  1235677777787   999999998653

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.24  E-value=5e-11  Score=110.79  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=84.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|.+++.+++.   ..+|+++|+++++++.|+++++.+++. +++++++|+.+.++.+..  ..++||
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~--~~~~fD  358 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPW--AKNGFD  358 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGG--GTTCCS
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhh--hcCCCC
Confidence            46689999999999999999986   479999999999999999999999887 699999999874332100  036899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++|.+.......++.+.+    ++|++++.+.
T Consensus       359 ~Vv~dPPr~g~~~~~~~l~~----~~p~~ivyvs  388 (433)
T 1uwv_A          359 KVLLDPARAGAAGVMQQIIK----LEPIRIVYVS  388 (433)
T ss_dssp             EEEECCCTTCCHHHHHHHHH----HCCSEEEEEE
T ss_pred             EEEECCCCccHHHHHHHHHh----cCCCeEEEEE
Confidence            99999886655666666665    5899988875

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.24  E-value=5.7e-11  Score=102.36  Aligned_cols=149  Identities=13%  Similarity=0.157  Sum_probs=104.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHH---C---CCCCEEEEEe-----cCcc-------------------HHHHHHHHH---
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALV---L---PESGCLVACE-----RDAR-------------------SLEVAKKYY---  164 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~---~---~~~~~v~~iD-----~s~~-------------------~~~~a~~~~---  164 (282)
                      .-+..|+|+||..|.++..++..   +   ....+|+++|     ..+.                   ..+..++.+   
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            45679999999999999987753   1   2357899999     2211                   111122222   


Q ss_pred             ---HHhCC-CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411          165 ---ERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV  239 (282)
Q Consensus       165 ---~~~g~-~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~  239 (282)
                         +..+. .++++++.|++.+.++.+..+....+||+|++|+.. ..+..+++.+.+.   |+|||+|++||+.+++- 
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~---l~~GGvIv~DD~~~~~w-  223 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPY---LTKGSIVAFDELDNPKW-  223 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGG---EEEEEEEEESSTTCTTC-
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHH---hCCCcEEEEcCCCCCCC-
Confidence               23454 478999999999999887554434689999999985 4566678888888   99999999999853221 


Q ss_pred             cCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEE
Q 023411          240 ADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQ  280 (282)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~  280 (282)
                           . ..+.|+++|    ..+.++....+|++.+...++
T Consensus       224 -----~-G~~~A~~ef----~~~~~~~i~~~p~~~~~~y~~  254 (257)
T 3tos_A          224 -----P-GENIAMRKV----LGLDHAPLRLLPGRPAPAYLR  254 (257)
T ss_dssp             -----T-HHHHHHHHH----TCTTSSCCEECTTCSCCEEEE
T ss_pred             -----h-HHHHHHHHH----HhhCCCeEEEccCCCCCEEEE
Confidence                 1 123444444    456688899999998877654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.23  E-value=8.1e-11  Score=97.45  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=72.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.+++++.      +++++++|+.+.         .++||
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~---------~~~~D  112 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI---------SGKYD  112 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC---------CCCEE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC---------CCCee
Confidence            36789999999999999999986 3 3589999999999999998875      589999999763         36899


Q ss_pred             EEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|+++.+...     ...+++.+.+.   +  |+++++.
T Consensus       113 ~v~~~~p~~~~~~~~~~~~l~~~~~~---~--g~~~~~~  146 (200)
T 1ne2_A          113 TWIMNPPFGSVVKHSDRAFIDKAFET---S--MWIYSIG  146 (200)
T ss_dssp             EEEECCCC-------CHHHHHHHHHH---E--EEEEEEE
T ss_pred             EEEECCCchhccCchhHHHHHHHHHh---c--CcEEEEE
Confidence            9999977322     34577777777   6  5655554

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.23  E-value=2e-11  Score=105.46  Aligned_cols=95  Identities=16%  Similarity=0.180  Sum_probs=75.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++..     .  .++++|+.+..  .    ..++||+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~--~----~~~~fD~  117 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLP--F----PSGAFEA  117 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCC--S----CTTCEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCC--C----CCCCEEE
Confidence            6789999999999999999975   4799999999999999988753     1  27888886532  1    1478999


Q ss_pred             EEEcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          199 AFVDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       199 V~id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |++...    ..+....++.+.++   |+|||.+++..
T Consensus       118 v~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~l~~~~  152 (260)
T 2avn_A          118 VLALGDVLSYVENKDKAFSEIRRV---LVPDGLLIATV  152 (260)
T ss_dssp             EEECSSHHHHCSCHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             EEEcchhhhccccHHHHHHHHHHH---cCCCeEEEEEe
Confidence            998764    23456778888888   99999999854

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.23  E-value=5e-11  Score=104.77  Aligned_cols=97  Identities=18%  Similarity=0.177  Sum_probs=77.8

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      +..++.....+...+...++.+|||||||+|..+..+++.   +++|+++|+++.+++.+++++...+..++++++++|+
T Consensus        10 fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~   86 (285)
T 1zq9_A           10 ILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV   86 (285)
T ss_dssp             EECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce
Confidence            3456666666666666677889999999999999999987   3699999999999999999987766656799999999


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCcccc
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRMY  208 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~  208 (282)
                      .+..        ..+||+|+++.+..-.
T Consensus        87 ~~~~--------~~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           87 LKTD--------LPFFDTCVANLPYQIS  106 (285)
T ss_dssp             TTSC--------CCCCSEEEEECCGGGH
T ss_pred             eccc--------chhhcEEEEecCcccc
Confidence            7541        2579999998765433

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.23  E-value=4.7e-11  Score=98.71  Aligned_cols=99  Identities=14%  Similarity=0.170  Sum_probs=70.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH------------
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL------------  184 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l------------  184 (282)
                      .++.+|||+|||+|.++..+++..++ +++|+++|+++..           .. .+++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            46679999999999999999998863 5899999999842           12 35899999986532            


Q ss_pred             -------HHHHhCCCCCceeEEEEcCCccc-------c-------HHHHHHHHHhhcCCCCCcEEEEe
Q 023411          185 -------KALILNGEASSYDFAFVDAEKRM-------Y-------QEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       185 -------~~l~~~~~~~~fDlV~id~~~~~-------~-------~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                             ..+......++||+|+++.....       .       ...++.+.++   |+|||.+++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~---LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQY---INIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHH---ccCCCEEEEE
Confidence                   00000001468999999865322       1       1245666677   9999999985

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.22  E-value=2.8e-11  Score=104.78  Aligned_cols=95  Identities=19%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..+++.++ +.+|+++|+++.+++.++++.      .++.++.+|+.+. + .    ..++||
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-~----~~~~fD  150 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P-F----SDTSMD  150 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S-B----CTTCEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C-C----CCCcee
Confidence            4678999999999999999999875 679999999999999988764      2478999998653 1 1    147899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +|++.....    .++.+.++   |+|||.+++..
T Consensus       151 ~v~~~~~~~----~l~~~~~~---L~pgG~l~~~~  178 (269)
T 1p91_A          151 AIIRIYAPC----KAEELARV---VKPGGWVITAT  178 (269)
T ss_dssp             EEEEESCCC----CHHHHHHH---EEEEEEEEEEE
T ss_pred             EEEEeCChh----hHHHHHHh---cCCCcEEEEEE
Confidence            999865533    36778888   99999998854

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.22  E-value=1.1e-11  Score=111.79  Aligned_cols=106  Identities=12%  Similarity=0.090  Sum_probs=80.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.++.  +++.+..++.++++++.+|+.+.   +     . +|
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---~-----p-~~  248 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---V-----P-HA  248 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---C-----C-CC
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---C-----C-CC
Confidence            45678999999999999999999987 689999999 44444  44444456667899999998632   1     3 89


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      |+|++....+++     ...++.+.+.   |||||.|++.+...+..
T Consensus       249 D~v~~~~vlh~~~d~~~~~~L~~~~~~---LkpgG~l~i~e~~~~~~  292 (348)
T 3lst_A          249 DVHVLKRILHNWGDEDSVRILTNCRRV---MPAHGRVLVIDAVVPEG  292 (348)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHT---CCTTCEEEEEECCBCSS
T ss_pred             cEEEEehhccCCCHHHHHHHHHHHHHh---cCCCCEEEEEEeccCCC
Confidence            999997765443     3456666666   99999999887766554

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.20  E-value=8.4e-12  Score=115.16  Aligned_cols=102  Identities=14%  Similarity=0.140  Sum_probs=74.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||||||+|.++..+++.   +.+|+++|+++.+++.|+++    +......+...+..+.++..     .++|
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~-----~~~f  172 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT-----EGPA  172 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH-----HCCE
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC-----CCCE
Confidence            346779999999999999999975   46999999999999988875    34322222222222223322     4899


Q ss_pred             eEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          197 DFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       197 DlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+|++....++   ...+++.+.++   |||||++++...
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~---LkpgG~l~i~~~  209 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDAL---LAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHH---cCCCeEEEEEeC
Confidence            99999877544   45677777777   999999999743

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.19  E-value=7.9e-11  Score=97.45  Aligned_cols=95  Identities=15%  Similarity=0.222  Sum_probs=68.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHH---Hh-CC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KAL---IL-NG  191 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l---~~-~~  191 (282)
                      .++.+|||+|||+|.++..+++.   +++|+|+|+++..           .. .+++++++|+.+..  ..+   .. .+
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhccc
Confidence            46789999999999999999986   5899999999852           12 35999999986531  111   10 00


Q ss_pred             CCCceeEEEEcCCccc--------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          192 EASSYDFAFVDAEKRM--------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~--------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                       .++||+|++|..+..              ....++.+.++   |||||.+++.
T Consensus        89 -~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~---LkpGG~lv~k  138 (191)
T 3dou_A           89 -IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRY---LRNGGNVLLK  138 (191)
T ss_dssp             -CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             -CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHH---ccCCCEEEEE
Confidence             148999999865211              12345566677   9999999985

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.18  E-value=4.4e-11  Score=104.50  Aligned_cols=106  Identities=17%  Similarity=0.216  Sum_probs=74.7

Q ss_pred             CCCEEEEEcccccH----HHHHHHHHCCC---CCEEEEEecCccHHHHHHHHHH--------------H---------hC
Q 023411          119 GAQRCIEVGVYTGY----SSLAIALVLPE---SGCLVACERDARSLEVAKKYYE--------------R---------AG  168 (282)
Q Consensus       119 ~~~~VLEIG~G~G~----~t~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~--------------~---------~g  168 (282)
                      ++.+|+|+|||+|.    .+..+++.++.   +.+|+|+|+|+++++.|+++.-              .         .|
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45699999999998    55666666442   3589999999999999998641              0         00


Q ss_pred             -------CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          169 -------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       169 -------~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                             +..+|+|.++|..+. + ..   ..++||+|+|-+....     ....++.+.+.   |+|||+|++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~-~-~~---~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~---L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK-Q-YN---VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPL---LKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS-S-CC---CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGG---EEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCC-C-CC---cCCCeeEEEECCchHhCCHHHHHHHHHHHHHH---hCCCcEEEEEe
Confidence                   113699999998762 1 10   0368999999776432     23455556665   99999999943

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.18  E-value=1.2e-11  Score=103.89  Aligned_cols=98  Identities=15%  Similarity=0.093  Sum_probs=74.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..+..+++. +  .+++++|+++.+++.++++.        .+++++|+.+.....    .+++||
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~----~~~~fD   95 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G--TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPY----EEEQFD   95 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T--CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCS----CTTCEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C--CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCC----CCCccC
Confidence            46789999999999999999986 3  79999999999998887643        267888886421111    147899


Q ss_pred             EEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          198 FAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       198 lV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|++....++   ....++.+.++   |+|||.+++...
T Consensus        96 ~v~~~~~l~~~~~~~~~l~~~~~~---L~~gG~l~~~~~  131 (230)
T 3cc8_A           96 CVIFGDVLEHLFDPWAVIEKVKPY---IKQNGVILASIP  131 (230)
T ss_dssp             EEEEESCGGGSSCHHHHHHHTGGG---EEEEEEEEEEEE
T ss_pred             EEEECChhhhcCCHHHHHHHHHHH---cCCCCEEEEEeC
Confidence            9999876444   34556666666   999999998643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.17  E-value=9.9e-11  Score=105.49  Aligned_cols=116  Identities=13%  Similarity=0.081  Sum_probs=88.6

Q ss_pred             cCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCCC----CEEEEEecCccHHHHHHHHHHHhCCCCcEE
Q 023411          103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPES----GCLVACERDARSLEVAKKYYERAGVSHKVK  174 (282)
Q Consensus       103 ~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~~----~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~  174 (282)
                      .......++..++.    ..++.+|||+|||+|.++..+++.++..    .+++|+|+++.+++.|+.++...|+  +++
T Consensus       110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~  187 (344)
T 2f8l_A          110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMT  187 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--Cce
Confidence            44455555555543    3356799999999999999999887532    7899999999999999999998887  489


Q ss_pred             EEEcchhhHHHHHHhCCCCCceeEEEEcCCcccc---------------------HHHHHHHHHhhcCCCCCcEEEE
Q 023411          175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMY---------------------QEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       175 ~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~---------------------~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++++|+.+..+       .++||+|+.+.+....                     ..+++.+.+.   |+|||++++
T Consensus       188 i~~~D~l~~~~-------~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~---Lk~gG~~~~  254 (344)
T 2f8l_A          188 LLHQDGLANLL-------VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY---TKPGGYLFF  254 (344)
T ss_dssp             EEESCTTSCCC-------CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT---EEEEEEEEE
T ss_pred             EEECCCCCccc-------cCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHH---hCCCCEEEE
Confidence            99999875321       4789999998772211                     2467777777   999998877

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.17  E-value=7.4e-10  Score=100.15  Aligned_cols=107  Identities=11%  Similarity=0.104  Sum_probs=83.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|+|||||+|..+..+++..| +.+++..|. |++++.+++++...+ .++|+++.+|+.+..        ...+
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~--------~~~~  245 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDP--------LPEA  245 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSC--------CCCC
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCC--------CCCc
Confidence            45667999999999999999999998 789999997 889999998876544 578999999987531        3568


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |++++....+++     ...++.+.+.   |+|||.+++-+.+.+.
T Consensus       246 D~~~~~~vlh~~~d~~~~~iL~~~~~a---l~pgg~lli~e~~~~~  288 (353)
T 4a6d_A          246 DLYILARVLHDWADGKCSHLLERIYHT---CKPGGGILVIESLLDE  288 (353)
T ss_dssp             SEEEEESSGGGSCHHHHHHHHHHHHHH---CCTTCEEEEEECCCCT
T ss_pred             eEEEeeeecccCCHHHHHHHHHHHHhh---CCCCCEEEEEEeeeCC
Confidence            999987664443     3457777777   9999988877665543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.16  E-value=4.7e-11  Score=100.38  Aligned_cols=98  Identities=23%  Similarity=0.353  Sum_probs=76.4

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+....++.+|||||||+|..+..++..       +++|+++.+++.++++        +++++++|+.+. + .    .
T Consensus        41 ~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~----~   99 (219)
T 1vlm_A           41 AVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L----K   99 (219)
T ss_dssp             HHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S----C
T ss_pred             HHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C----C
Confidence            3444455889999999999999887642       9999999999998876        478999988653 2 1    1


Q ss_pred             CCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          193 ASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       193 ~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .++||+|++.....   +...+++.+.++   |+|||.+++....
T Consensus       100 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~---L~pgG~l~i~~~~  141 (219)
T 1vlm_A          100 DESFDFALMVTTICFVDDPERALKEAYRI---LKKGGYLIVGIVD  141 (219)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHH---EEEEEEEEEEEEC
T ss_pred             CCCeeEEEEcchHhhccCHHHHHHHHHHH---cCCCcEEEEEEeC
Confidence            46899999987643   356678888888   9999999997553

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.16  E-value=6.6e-11  Score=102.43  Aligned_cols=108  Identities=18%  Similarity=0.140  Sum_probs=78.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHH-------CCC----CCEEEEEecCc--------------cHHHHHHHHHHHhC-----
Q 023411          119 GAQRCIEVGVYTGYSSLAIALV-------LPE----SGCLVACERDA--------------RSLEVAKKYYERAG-----  168 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~-------~~~----~~~v~~iD~s~--------------~~~~~a~~~~~~~g-----  168 (282)
                      ++.+|||||+|+|++++.+++.       .|.    ..+++++|..|              +..+.+++.++...     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999999998775       342    24899999987              44446777766421     


Q ss_pred             -----C---CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc--c----cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          169 -----V---SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--M----YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       169 -----~---~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~--~----~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                           +   ..+++++.||+.+.++.+.... ...||+||+|+...  +    ..++++.+.++   |+|||+++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~-~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~---L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSL-NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARL---ARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGG-TTCEEEEEECSSCTTTCGGGCCHHHHHHHHHH---EEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhccccc-CCeEEEEEECCCCcccChhhcCHHHHHHHHHH---cCCCcEEEE
Confidence                 1   1357899999998776652100 13799999997521  2    56789999999   999999986

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.16  E-value=3.7e-11  Score=104.13  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=73.2

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc-------cHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-------RSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~-------~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ++...+...++.+|||+|||+|..++.++..   +++|+++|+++       ++++.|+++.+.+++.++++++++|+.+
T Consensus        74 ~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~  150 (258)
T 2r6z_A           74 LIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAE  150 (258)
T ss_dssp             HHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHH
T ss_pred             HHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHH
Confidence            3444444556679999999999999999985   47899999999       9999999999888877789999999988


Q ss_pred             HHHHHHhCCCCCceeEEEEcCC
Q 023411          183 SLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      .++.+...  .++||+|++|..
T Consensus       151 ~l~~~~~~--~~~fD~V~~dP~  170 (258)
T 2r6z_A          151 QMPALVKT--QGKPDIVYLDPM  170 (258)
T ss_dssp             HHHHHHHH--HCCCSEEEECCC
T ss_pred             HHHhhhcc--CCCccEEEECCC
Confidence            76655210  168999999975

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.16  E-value=1.2e-10  Score=103.10  Aligned_cols=95  Identities=15%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      +..++.....+...+...++.+|||||||+|..+..+++.   +++|+++|+++.+++.+++++...+. ++++++++|+
T Consensus        24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~   99 (299)
T 2h1r_A           24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDA   99 (299)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----C
T ss_pred             eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECch
Confidence            3456666666666666667889999999999999999875   47999999999999999999987776 4699999998


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCccc
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRM  207 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~  207 (282)
                      .+..        ..+||+|+++.+..-
T Consensus       100 ~~~~--------~~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          100 IKTV--------FPKFDVCTANIPYKI  118 (299)
T ss_dssp             CSSC--------CCCCSEEEEECCGGG
T ss_pred             hhCC--------cccCCEEEEcCCccc
Confidence            7541        358999999877543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.15  E-value=1.9e-10  Score=94.57  Aligned_cols=100  Identities=10%  Similarity=0.092  Sum_probs=71.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCC--------CEEEEEecCccHHHHHHHHHHHhCCCCcEEEE-EcchhhHHH--H
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPES--------GCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAADSLK--A  186 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~--------~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~-~gd~~~~l~--~  186 (282)
                      .++.+|||+|||+|.++..+++.++..        ++|+++|+++..           .. .+++++ ++|..+...  .
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHH
Confidence            467899999999999999999987633        899999999852           12 358889 888765321  1


Q ss_pred             HHhCCCCCceeEEEEcCCccc-------c-------HHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          187 LILNGEASSYDFAFVDAEKRM-------Y-------QEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~~~~-------~-------~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +......++||+|+++.....       .       ...++.+.++   |+|||.+++..
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDI---LQPGGTFLCKT  145 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHH---hcCCCEEEEEe
Confidence            100011358999999763221       1       2556777777   99999999864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.14  E-value=1.8e-11  Score=107.64  Aligned_cols=97  Identities=14%  Similarity=0.082  Sum_probs=71.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHH-HHHhCCCCCce
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLK-ALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~-~l~~~~~~~~f  196 (282)
                      ++.+|||||||+|.++..+++. + .++|+|+|+++.|++.+.++      ..++.... .++..... .+    ...+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~l----~~~~f  152 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVDF----TEGLP  152 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGGC----TTCCC
T ss_pred             cccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhhC----CCCCC
Confidence            4679999999999999999885 2 46999999999999875432      12444332 34332211 11    12459


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |+|++|.........+..+.++   |+|||.+++
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rv---LkpGG~lv~  183 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKI---LVDGGQVVA  183 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHH---SCTTCEEEE
T ss_pred             CEEEEEeeHhhHHHHHHHHHHH---cCcCCEEEE
Confidence            9999998877777889999999   999999877

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.14  E-value=1.8e-11  Score=104.46  Aligned_cols=97  Identities=13%  Similarity=0.175  Sum_probs=67.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHH-HHHHhCCCCCce
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSL-KALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l-~~l~~~~~~~~f  196 (282)
                      ++++|||||||+|.++..+++. + ..+|+|+|+++++++.++++..      ++..... +..... ..+    ....|
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~----~~~~~  104 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADF----EQGRP  104 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGC----CSCCC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHc----CcCCC
Confidence            4679999999999999999986 2 2599999999999998766432      2322211 221110 011    01236


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |.+.+|.........+..+.++   |||||.+++
T Consensus       105 d~~~~D~v~~~l~~~l~~i~rv---LkpgG~lv~  135 (232)
T 3opn_A          105 SFTSIDVSFISLDLILPPLYEI---LEKNGEVAA  135 (232)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHH---SCTTCEEEE
T ss_pred             CEEEEEEEhhhHHHHHHHHHHh---ccCCCEEEE
Confidence            7777776655567788999999   999999988

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.13  E-value=1.7e-10  Score=99.11  Aligned_cols=145  Identities=8%  Similarity=0.029  Sum_probs=98.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|-+++.++...| ..+|+++|+++.+++.+++++..+|+.  .++.+.|.....+       .++||
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p-------~~~~D  200 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL-------DEPAD  200 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC-------CSCCS
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC-------CCCcc
Confidence            5688999999999999999887554 789999999999999999999999876  6888888765332       68999


Q ss_pred             EEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCC-CCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEee
Q 023411          198 FAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVL-WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP  271 (282)
Q Consensus       198 lV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp  271 (282)
                      ++++.-..+..     ...+ .+..-   |+++|++|--+.. ..|.    .- . -..-..++++....+.++..-.+-
T Consensus       201 vaL~lkti~~Le~q~kg~g~-~ll~a---L~~~~vvVSfp~ksl~Gr----s~-g-m~~~Y~~~~e~~~~~~g~~~~~~~  270 (281)
T 3lcv_B          201 VTLLLKTLPCLETQQRGSGW-EVIDI---VNSPNIVVTFPTKSLGQR----SK-G-MFQNYSQSFESQARERSCRIQRLE  270 (281)
T ss_dssp             EEEETTCHHHHHHHSTTHHH-HHHHH---SSCSEEEEEEECC------------C-HHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             hHHHHHHHHHhhhhhhHHHH-HHHHH---hCCCCEEEeccchhhcCC----Cc-c-hhhHHHHHHHHHHHhcCCceeeee
Confidence            99987663332     2234 45555   8999999886662 1111    00 0 011122333333333455666677


Q ss_pred             cCCceEEEEEC
Q 023411          272 IGDGMTICQKR  282 (282)
Q Consensus       272 ~~~Gl~~~~k~  282 (282)
                      +++=|..+.+|
T Consensus       271 ~~nEl~y~i~k  281 (281)
T 3lcv_B          271 IGNELIYVIQK  281 (281)
T ss_dssp             ETTEEEEEEC-
T ss_pred             ecCeeEEEecC
Confidence            77776666543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.12  E-value=1.4e-10  Score=101.73  Aligned_cols=106  Identities=15%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--C--CCCcEEEEEcchhhHHHHHHhCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--G--VSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g--~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ...+++||-||.|.|..+..+++..+ ..+|+.||+++..++.+++.+...  +  -+.|++++.+|+.+++...     
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~-----  154 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT-----  154 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS-----
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc-----
Confidence            45788999999999999999998654 579999999999999999998642  1  2468999999999876543     


Q ss_pred             CCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++||+|++|....       ...++++.+.+.   |+|||+++..
T Consensus       155 ~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~---L~p~Gv~v~q  197 (294)
T 3o4f_A          155 SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRC---LNPGGIFVAQ  197 (294)
T ss_dssp             SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHT---EEEEEEEEEE
T ss_pred             cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHH---hCCCCEEEEe
Confidence            58999999996521       246789999998   9999999985

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.12  E-value=4.5e-10  Score=99.38  Aligned_cols=88  Identities=16%  Similarity=0.098  Sum_probs=71.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      +...++.+|||+|||+|..+..+++.++ +++|+++|+|+++++.|+++++.++  ++++++++|+.+....+...+ ..
T Consensus        22 L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g-~~   97 (301)
T 1m6y_A           22 LKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG-IE   97 (301)
T ss_dssp             HCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT-CS
T ss_pred             cCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcC-CC
Confidence            3445778999999999999999999987 7899999999999999999998877  579999999876533232111 25


Q ss_pred             ceeEEEEcCCcc
Q 023411          195 SYDFAFVDAEKR  206 (282)
Q Consensus       195 ~fDlV~id~~~~  206 (282)
                      +||.|++|.+..
T Consensus        98 ~~D~Vl~D~gvS  109 (301)
T 1m6y_A           98 KVDGILMDLGVS  109 (301)
T ss_dssp             CEEEEEEECSCC
T ss_pred             CCCEEEEcCccc
Confidence            899999998643

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.11  E-value=2.1e-10  Score=105.24  Aligned_cols=119  Identities=14%  Similarity=0.156  Sum_probs=89.7

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC---C----------------------------------C
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---E----------------------------------S  144 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~---~----------------------------------~  144 (282)
                      .+.+..+..+..++...++..|||.+||+|.+++.++....   +                                  .
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            35666666666677677788999999999999988776532   1                                  1


Q ss_pred             CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-------ccHHHHHHHHH
Q 023411          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQ  217 (282)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-------~~~~~l~~~~~  217 (282)
                      .+|+|+|+++.+++.|++++..+|+.++++++++|+.+...       .++||+|+++.+..       ....++..+.+
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~  336 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------EDEYGVVVANPPYGERLEDEEAVRQLYREMGI  336 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------CCCCCEEEECCCCccccCCchhHHHHHHHHHH
Confidence            56999999999999999999999998889999999987532       46899999998843       22334444555


Q ss_pred             hhcCCCC--CcEEEE
Q 023411          218 LLLQIRV--GGIIVI  230 (282)
Q Consensus       218 ~~~~Lkp--gG~lv~  230 (282)
                      .   |++  ||.+.+
T Consensus       337 ~---lk~~~g~~~~i  348 (393)
T 3k0b_A          337 V---YKRMPTWSVYV  348 (393)
T ss_dssp             H---HHTCTTCEEEE
T ss_pred             H---HhcCCCCEEEE
Confidence            4   444  665544

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.09  E-value=2.5e-10  Score=95.43  Aligned_cols=95  Identities=15%  Similarity=0.138  Sum_probs=72.0

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      ..++..+....++.+|||||||+|..+..++      .+++++|+++.                +++++++|+.+. + .
T Consensus        56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~-~  111 (215)
T 2zfu_A           56 DRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P-L  111 (215)
T ss_dssp             HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S-C
T ss_pred             HHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C-C
Confidence            3455555555677899999999999887662      58999999987                367888888653 1 1


Q ss_pred             HhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          188 ILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                          ..++||+|++....  .+....++.+.++   |+|||.+++.+.
T Consensus       112 ----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~---L~~gG~l~i~~~  152 (215)
T 2zfu_A          112 ----EDESVDVAVFCLSLMGTNIRDFLEEANRV---LKPGGLLKVAEV  152 (215)
T ss_dssp             ----CTTCEEEEEEESCCCSSCHHHHHHHHHHH---EEEEEEEEEEEC
T ss_pred             ----CCCCEeEEEEehhccccCHHHHHHHHHHh---CCCCeEEEEEEc
Confidence                14789999987653  3456778888888   999999999654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.09  E-value=9.1e-10  Score=97.10  Aligned_cols=99  Identities=12%  Similarity=0.063  Sum_probs=78.7

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      .+.+++.....+...+...++.+|||||||+|..|..+++.   ..+|++||+++++++.+++++..  . ++++++++|
T Consensus        31 nfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~--~-~~v~vi~gD  104 (295)
T 3gru_A           31 CFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL--Y-NNIEIIWGD  104 (295)
T ss_dssp             CEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH--C-SSEEEEESC
T ss_pred             cccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc--C-CCeEEEECc
Confidence            35567777777777777778889999999999999999987   47999999999999999999873  2 369999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCccccHH
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKRMYQE  210 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~  210 (282)
                      +.+....      ..+||.|+.+.+..-...
T Consensus       105 ~l~~~~~------~~~fD~Iv~NlPy~is~p  129 (295)
T 3gru_A          105 ALKVDLN------KLDFNKVVANLPYQISSP  129 (295)
T ss_dssp             TTTSCGG------GSCCSEEEEECCGGGHHH
T ss_pred             hhhCCcc------cCCccEEEEeCcccccHH
Confidence            9864211      357999998877554433

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.08  E-value=5.4e-10  Score=102.12  Aligned_cols=119  Identities=13%  Similarity=0.100  Sum_probs=90.5

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC-------------------------------------C
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-------------------------------------S  144 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~-------------------------------------~  144 (282)
                      .+.+..+..+..+....++..++|.+||+|.+.+.++.....                                     .
T Consensus       177 pl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  256 (384)
T 3ldg_A          177 PIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ  256 (384)
T ss_dssp             CCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence            345566666666777778889999999999999887764321                                     1


Q ss_pred             CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-------ccHHHHHHHHH
Q 023411          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQ  217 (282)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-------~~~~~l~~~~~  217 (282)
                      .+++|+|+++.+++.|++|++.+|+.++++++++|+.+...       .++||+|++|.+..       ....++..+.+
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~  329 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------NKINGVLISNPPYGERLLDDKAVDILYNEMGE  329 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------cCCcCEEEECCchhhccCCHHHHHHHHHHHHH
Confidence            56999999999999999999999999899999999987532       36899999998742       23445555555


Q ss_pred             hhcCCCC--CcEEEE
Q 023411          218 LLLQIRV--GGIIVI  230 (282)
Q Consensus       218 ~~~~Lkp--gG~lv~  230 (282)
                      .   |++  ||.+.+
T Consensus       330 ~---lk~~~g~~~~i  341 (384)
T 3ldg_A          330 T---FAPLKTWSQFI  341 (384)
T ss_dssp             H---HTTCTTSEEEE
T ss_pred             H---HhhCCCcEEEE
Confidence            5   554  765544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.07  E-value=2.7e-10  Score=104.28  Aligned_cols=118  Identities=14%  Similarity=0.131  Sum_probs=87.7

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC-------------------------------------CCC
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP-------------------------------------ESG  145 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~-------------------------------------~~~  145 (282)
                      +.+..+..+..+....++..|||.|||+|.+++.++....                                     ...
T Consensus       179 l~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  258 (385)
T 3ldu_A          179 IRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF  258 (385)
T ss_dssp             CCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence            3455555555555666788999999999999998877532                                     125


Q ss_pred             EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-------cHHHHHHHHHh
Q 023411          146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-------YQEYFELLLQL  218 (282)
Q Consensus       146 ~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-------~~~~l~~~~~~  218 (282)
                      +|+|+|+++.+++.|++++..+|+.+.+++.++|+.+...       .++||+|+++++...       ....+..+.+.
T Consensus       259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~  331 (385)
T 3ldu_A          259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYA  331 (385)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHH
Confidence            7999999999999999999999998889999999987532       468999999988432       23344445455


Q ss_pred             hcCCCC--CcEEEE
Q 023411          219 LLQIRV--GGIIVI  230 (282)
Q Consensus       219 ~~~Lkp--gG~lv~  230 (282)
                         |++  |+.+.+
T Consensus       332 ---lk~~~g~~~~i  342 (385)
T 3ldu_A          332 ---FRKLKNWSYYL  342 (385)
T ss_dssp             ---HHTSBSCEEEE
T ss_pred             ---HhhCCCCEEEE
Confidence               544  655443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.07  E-value=1.8e-10  Score=106.16  Aligned_cols=109  Identities=16%  Similarity=0.202  Sum_probs=82.1

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      ...+....++..++...++.+|||+|||+|.++..+++..+...+++|+|+++.+++.|          .+++++++|+.
T Consensus        22 ~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~   91 (421)
T 2ih2_A           22 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFL   91 (421)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGG
T ss_pred             eCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChh
Confidence            44555666666666544567999999999999999998764368999999999998766          36999999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCcc--------------c------------------cHHHHHHHHHhhcCCCCCcEEE
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKR--------------M------------------YQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~--------------~------------------~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      +..+       .++||+|+++++..              .                  +..+++.+.++   |+|||.++
T Consensus        92 ~~~~-------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~---Lk~~G~~~  161 (421)
T 2ih2_A           92 LWEP-------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRL---LKPGGVLV  161 (421)
T ss_dssp             GCCC-------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHH---EEEEEEEE
T ss_pred             hcCc-------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHH---hCCCCEEE
Confidence            6421       46899999975421              0                  11456677777   99999887


Q ss_pred             E
Q 023411          230 I  230 (282)
Q Consensus       230 ~  230 (282)
                      +
T Consensus       162 ~  162 (421)
T 2ih2_A          162 F  162 (421)
T ss_dssp             E
T ss_pred             E
Confidence            6

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.06  E-value=2.5e-10  Score=109.67  Aligned_cols=105  Identities=17%  Similarity=0.211  Sum_probs=77.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||.|..+..||+.   +++|+|||+++.+++.|+......|.. ++++.++++.+.....    ++++||
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~----~~~~fD  136 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL----EEGEFD  136 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC----CTTSCS
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc----cCCCcc
Confidence            35679999999999999999985   689999999999999999999887754 4999999997765432    157899


Q ss_pred             EEEEcCCccccHHH--HHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRMYQEY--FELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~~~~~--l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|++-...++..+.  +..+.++.+.|+++|...+
T Consensus       137 ~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          137 LAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             EEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             EEEECcchhcCCCHHHHHHHHHHHHHhccccceee
Confidence            99998775554321  1122222222666664444

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.04  E-value=2.6e-10  Score=103.68  Aligned_cols=100  Identities=15%  Similarity=0.126  Sum_probs=78.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++       ..+++++.+|+.+..        ... |
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~--------p~~-D  263 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPA-------FSGVEHLGGDMFDGV--------PKG-D  263 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCC--------CCC-S
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhh-------cCCCEEEecCCCCCC--------CCC-C
Confidence            3568999999999999999999987 789999999 888766553       247999999987521        223 9


Q ss_pred             EEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          198 FAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       198 lV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      +|++....+++     ...++.+.+.   |+|||.|++.+...+..
T Consensus       264 ~v~~~~vlh~~~~~~~~~~l~~~~~~---L~pgG~l~i~e~~~~~~  306 (368)
T 3reo_A          264 AIFIKWICHDWSDEHCLKLLKNCYAA---LPDHGKVIVAEYILPPS  306 (368)
T ss_dssp             EEEEESCGGGBCHHHHHHHHHHHHHH---SCTTCEEEEEECCCCSS
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHH---cCCCCEEEEEEeccCCC
Confidence            99987765432     3467777777   99999999888776554

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.04  E-value=3.7e-10  Score=103.65  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=67.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ++.+|||+|||+|..++.+++.   +++|+++|+|+.+++.|+++++.+  |+ ++++++++|+.+.++...    .++|
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~----~~~f  164 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK----TFHP  164 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH----HHCC
T ss_pred             CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc----CCCc
Confidence            3789999999999999999875   479999999999999999999988  87 579999999988665431    3589


Q ss_pred             eEEEEcCC
Q 023411          197 DFAFVDAE  204 (282)
Q Consensus       197 DlV~id~~  204 (282)
                      |+||+|.+
T Consensus       165 DvV~lDPP  172 (410)
T 3ll7_A          165 DYIYVDPA  172 (410)
T ss_dssp             SEEEECCE
T ss_pred             eEEEECCC
Confidence            99999965

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.04  E-value=4e-10  Score=102.37  Aligned_cols=101  Identities=16%  Similarity=0.099  Sum_probs=78.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +++++.+++       .++++++.+|+.+..        ... 
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~--------p~~-  260 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFKEV--------PSG-  260 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCC--------CCC-
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCCCC--------CCC-
Confidence            34578999999999999999999987 789999999 887766553       257999999987521        223 


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      |+|++....+++     ...++.+.+.   |+|||.|++.+...+..
T Consensus       261 D~v~~~~vlh~~~d~~~~~~L~~~~~~---L~pgG~l~i~e~~~~~~  304 (364)
T 3p9c_A          261 DTILMKWILHDWSDQHCATLLKNCYDA---LPAHGKVVLVQCILPVN  304 (364)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHH---SCTTCEEEEEECCBCSS
T ss_pred             CEEEehHHhccCCHHHHHHHHHHHHHH---cCCCCEEEEEEeccCCC
Confidence            999987765433     3567777777   99999998887776553

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.04  E-value=4.9e-09  Score=89.09  Aligned_cols=101  Identities=11%  Similarity=0.016  Sum_probs=77.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ....++.+|||||||+|.+++.++   + ..+|+++|+++.+++.+++++...|.  +.++..+|.....+       .+
T Consensus       101 ~~~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~-------~~  167 (253)
T 3frh_A          101 FSAETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP-------AE  167 (253)
T ss_dssp             TSSCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC-------CC
T ss_pred             hcCCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC-------CC
Confidence            333578899999999999998877   3 78999999999999999999988774  47899888865432       57


Q ss_pred             ceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 SYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +||+|++.-..+.     ....+ .+..-   |+++|++|--.
T Consensus       168 ~~DvvLllk~lh~LE~q~~~~~~-~ll~a---L~~~~vvVsfP  206 (253)
T 3frh_A          168 AGDLALIFKLLPLLEREQAGSAM-ALLQS---LNTPRMAVSFP  206 (253)
T ss_dssp             BCSEEEEESCHHHHHHHSTTHHH-HHHHH---CBCSEEEEEEE
T ss_pred             CcchHHHHHHHHHhhhhchhhHH-HHHHH---hcCCCEEEEcC
Confidence            9999987644221     22234 44445   89999888765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.01  E-value=2.5e-10  Score=103.08  Aligned_cols=100  Identities=14%  Similarity=0.150  Sum_probs=78.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      . .+++++.+|+.+.   +      ..|
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~------p~~  247 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFTS---I------PNA  247 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTTC---C------CCC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------C-CCcEEEeccccCC---C------CCc
Confidence            34668999999999999999999887 689999999 988877664      1 2499999998652   1      249


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCC---CcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRV---GGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~Lkp---gG~lv~dd~~~~g  237 (282)
                      |+|++....+++     ...++.+.+.   |+|   ||.+++.+..++.
T Consensus       248 D~v~~~~~lh~~~d~~~~~~l~~~~~~---L~p~~~gG~l~i~e~~~~~  293 (352)
T 1fp2_A          248 DAVLLKYILHNWTDKDCLRILKKCKEA---VTNDGKRGKVTIIDMVIDK  293 (352)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHH---HSGGGCCCEEEEEECEECT
T ss_pred             cEEEeehhhccCCHHHHHHHHHHHHHh---CCCCCCCcEEEEEEeecCC
Confidence            999987764432     2567777777   999   9999887776554

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.00  E-value=2.1e-10  Score=104.40  Aligned_cols=99  Identities=15%  Similarity=0.119  Sum_probs=78.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      . .+++++.+|+.+.   +     .. ||
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~-----~~-~D  269 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFAS---V-----PQ-GD  269 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTTC---C-----CC-EE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcccC---C-----CC-CC
Confidence            4568999999999999999999987 689999999 888877654      1 3599999999752   1     23 99


Q ss_pred             EEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          198 FAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       198 lV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      +|++....+++     ...++.+.+.   |+|||.+++.+...+.
T Consensus       270 ~v~~~~~lh~~~d~~~~~~l~~~~~~---L~pgG~l~i~e~~~~~  311 (372)
T 1fp1_D          270 AMILKAVCHNWSDEKCIEFLSNCHKA---LSPNGKVIIVEFILPE  311 (372)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEEECS
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHh---cCCCCEEEEEEeccCC
Confidence            99998775443     2567777777   9999999988776554

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.99  E-value=4.6e-10  Score=104.66  Aligned_cols=120  Identities=9%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCC------------CCCEEEEEecCccHHHHHHHHHHHhC
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP------------ESGCLVACERDARSLEVAKKYYERAG  168 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~------------~~~~v~~iD~s~~~~~~a~~~~~~~g  168 (282)
                      .........++..++...++.+|+|.|||+|.+.+.+++.+.            ...+++|+|+++.+++.|+.++...|
T Consensus       153 fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g  232 (445)
T 2okc_A          153 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG  232 (445)
T ss_dssp             GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred             ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhC
Confidence            345666677777777777778999999999999999887641            13579999999999999999999888


Q ss_pred             CCC-cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc--------------------cHHHHHHHHHhhcCCCCCcE
Q 023411          169 VSH-KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--------------------YQEYFELLLQLLLQIRVGGI  227 (282)
Q Consensus       169 ~~~-~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~--------------------~~~~l~~~~~~~~~LkpgG~  227 (282)
                      +.. .++++++|+.....       .++||+|+.+++...                    ...+++.+.++   |+|||.
T Consensus       233 ~~~~~~~i~~gD~l~~~~-------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~---Lk~gG~  302 (445)
T 2okc_A          233 IGTDRSPIVCEDSLEKEP-------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLM---LKTGGR  302 (445)
T ss_dssp             CCSSCCSEEECCTTTSCC-------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHH---EEEEEE
T ss_pred             CCcCCCCEeeCCCCCCcc-------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHH---hccCCE
Confidence            753 57899999875421       358999999866221                    13577888888   999998


Q ss_pred             EEE
Q 023411          228 IVI  230 (282)
Q Consensus       228 lv~  230 (282)
                      +++
T Consensus       303 ~a~  305 (445)
T 2okc_A          303 AAV  305 (445)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.95  E-value=2.2e-09  Score=92.74  Aligned_cols=97  Identities=11%  Similarity=0.046  Sum_probs=74.9

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      .+..++.....+...+...++.+|||||||+|..|..+++.   +++|+++|+++++++.+++++..   .++++++++|
T Consensus        10 nFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D   83 (255)
T 3tqs_A           10 HFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQND   83 (255)
T ss_dssp             CEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESC
T ss_pred             ccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcc
Confidence            34566777777777777778899999999999999999985   37999999999999999998864   3469999999


Q ss_pred             hhhHH-HHHHhCCCCCceeEEEEcCCcc
Q 023411          180 AADSL-KALILNGEASSYDFAFVDAEKR  206 (282)
Q Consensus       180 ~~~~l-~~l~~~~~~~~fDlV~id~~~~  206 (282)
                      +.+.. +.+.   ..++|| |+.+.+..
T Consensus        84 ~~~~~~~~~~---~~~~~~-vv~NlPY~  107 (255)
T 3tqs_A           84 ALQFDFSSVK---TDKPLR-VVGNLPYN  107 (255)
T ss_dssp             TTTCCGGGSC---CSSCEE-EEEECCHH
T ss_pred             hHhCCHHHhc---cCCCeE-EEecCCcc
Confidence            98752 2210   125688 66666644

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.95  E-value=5.7e-10  Score=96.51  Aligned_cols=88  Identities=15%  Similarity=0.194  Sum_probs=69.3

Q ss_pred             HHHHHHhhcCC--CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--------CCCcEEEEEcc
Q 023411          110 LLAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------VSHKVKIKHGL  179 (282)
Q Consensus       110 ll~~l~~~~~~--~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--------~~~~v~~~~gd  179 (282)
                      .+...+...++  .+|||+|||+|..++.+++.   +++|++||+++.+.+.++++++...        +.++++++++|
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D  153 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence            34455555566  89999999999999999987   4689999999998888887776442        33579999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCc
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEK  205 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~  205 (282)
                      +.+.++.+     .++||+||+|+..
T Consensus       154 ~~~~L~~~-----~~~fDvV~lDP~y  174 (258)
T 2oyr_A          154 SLTALTDI-----TPRPQVVYLDPMF  174 (258)
T ss_dssp             HHHHSTTC-----SSCCSEEEECCCC
T ss_pred             HHHHHHhC-----cccCCEEEEcCCC
Confidence            98766543     3579999999864

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.93  E-value=4e-09  Score=91.86  Aligned_cols=119  Identities=14%  Similarity=0.056  Sum_probs=85.0

Q ss_pred             CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (282)
                      +..+..++.....+...+...++ +|||||||+|..|..+++.   +++|+++|+|+++++.+++++.    ..++++++
T Consensus        26 GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~----~~~v~vi~   97 (271)
T 3fut_A           26 GQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS----GLPVRLVF   97 (271)
T ss_dssp             SCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT----TSSEEEEE
T ss_pred             CccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC----CCCEEEEE
Confidence            33455677777777777777777 9999999999999999986   3689999999999999998875    24699999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|+.+....-     ...+|.|+.+.+..-....+..+... . .-..+++++.
T Consensus        98 ~D~l~~~~~~-----~~~~~~iv~NlPy~iss~il~~ll~~-~-~~~~~~lm~Q  144 (271)
T 3fut_A           98 QDALLYPWEE-----VPQGSLLVANLPYHIATPLVTRLLKT-G-RFARLVFLVQ  144 (271)
T ss_dssp             SCGGGSCGGG-----SCTTEEEEEEECSSCCHHHHHHHHHH-C-CEEEEEEEEE
T ss_pred             CChhhCChhh-----ccCccEEEecCcccccHHHHHHHhcC-C-CCCEEEEEee
Confidence            9998752110     13689999887755544444444332 1 1234555554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.93  E-value=1.3e-08  Score=91.95  Aligned_cols=120  Identities=13%  Similarity=0.090  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-----CcEEEEEcch
Q 023411          106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-----HKVKIKHGLA  180 (282)
Q Consensus       106 ~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-----~~v~~~~gd~  180 (282)
                      ....+...++...++.+|||+++|.|+-|..++.... ++.|+++|+++..++..+++++..+..     +++.+...|+
T Consensus       135 ~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~  213 (359)
T 4fzv_A          135 AASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG  213 (359)
T ss_dssp             GGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch
Confidence            4455666677788899999999999999999998664 578999999999999999999988764     4689999998


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCccc---------------------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRM---------------------------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~---------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ....+..     .+.||.|++|++...                           ....++...++   |||||+||..-.
T Consensus       214 ~~~~~~~-----~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~---lkpGG~LVYsTC  285 (359)
T 4fzv_A          214 RKWGELE-----GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLA---TKPGGHVVYSTC  285 (359)
T ss_dssp             GGHHHHS-----TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHT---EEEEEEEEEEES
T ss_pred             hhcchhc-----cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeC
Confidence            7654432     579999999976211                           12234444555   999999998655


Q ss_pred             C
Q 023411          234 L  234 (282)
Q Consensus       234 ~  234 (282)
                      -
T Consensus       286 S  286 (359)
T 4fzv_A          286 S  286 (359)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.91  E-value=4e-09  Score=100.55  Aligned_cols=123  Identities=8%  Similarity=-0.014  Sum_probs=94.1

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC-----------------CCEEEEEecCccHHHHHHH
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-----------------SGCLVACERDARSLEVAKK  162 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~-----------------~~~v~~iD~s~~~~~~a~~  162 (282)
                      ..........++..++...++.+|+|.+||+|.+.+.+++.+..                 ...++|+|+++.+++.|+.
T Consensus       150 ~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~  229 (541)
T 2ar0_A          150 QYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM  229 (541)
T ss_dssp             CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH
T ss_pred             eeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHH
Confidence            34455666777777777777789999999999999988876532                 1379999999999999999


Q ss_pred             HHHHhCCCC----cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-----------------cHHHHHHHHHhhcC
Q 023411          163 YYERAGVSH----KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------------YQEYFELLLQLLLQ  221 (282)
Q Consensus       163 ~~~~~g~~~----~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-----------------~~~~l~~~~~~~~~  221 (282)
                      ++...|...    ++.++++|+.......     .++||+|+.+++...                 ...++..+.++   
T Consensus       230 nl~l~gi~~~~~~~~~I~~gDtL~~~~~~-----~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~---  301 (541)
T 2ar0_A          230 NCLLHDIEGNLDHGGAIRLGNTLGSDGEN-----LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET---  301 (541)
T ss_dssp             HHHTTTCCCBGGGTBSEEESCTTSHHHHT-----SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHH---
T ss_pred             HHHHhCCCccccccCCeEeCCCccccccc-----ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHH---
Confidence            998888764    3789999987653321     478999999876221                 12577777787   


Q ss_pred             CCCCcEEEE
Q 023411          222 IRVGGIIVI  230 (282)
Q Consensus       222 LkpgG~lv~  230 (282)
                      |+|||.+++
T Consensus       302 Lk~gGr~a~  310 (541)
T 2ar0_A          302 LHPGGRAAV  310 (541)
T ss_dssp             EEEEEEEEE
T ss_pred             hCCCCEEEE
Confidence            999997765

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.90  E-value=1.8e-10  Score=100.80  Aligned_cols=99  Identities=6%  Similarity=-0.087  Sum_probs=67.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH-HHhCCCCcEEEE--EcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIK--HGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~v~~~--~gd~~~~l~~l~~~~~~~  194 (282)
                      .++.+|||+|||+|.++..+++.    ++|+|||+++ ++..+++.. .......+++++  ++|+.+. +       ++
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~-------~~  147 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E-------PF  147 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C-------CC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C-------CC
Confidence            46779999999999999999975    5899999998 432222110 000111158899  8998763 1       47


Q ss_pred             ceeEEEEcCCc--cc-----c--HHHHHHHHHhhcCCCCCc--EEEEeC
Q 023411          195 SYDFAFVDAEK--RM-----Y--QEYFELLLQLLLQIRVGG--IIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~--~~-----~--~~~l~~~~~~~~~LkpgG--~lv~dd  232 (282)
                      +||+|++|...  ..     .  ...++.+.++   |+|||  .++++.
T Consensus       148 ~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~---LkpGG~~~~v~~~  193 (276)
T 2wa2_A          148 QADTVLCDIGESNPTAAVEASRTLTVLNVISRW---LEYNQGCGFCVKV  193 (276)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH---HHHSTTCEEEEEE
T ss_pred             CcCEEEECCCcCCCchhhhHHHHHHHHHHHHHH---hccCCCcEEEEEe
Confidence            89999998651  11     1  1246666677   99999  998853

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.89  E-value=5.8e-09  Score=89.44  Aligned_cols=76  Identities=11%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+++.....+...+...++.+|||||||+|..+..+++..   ++|+++|+++++++.+++++..   .++++++++|+.
T Consensus        13 l~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~---~~~v~~~~~D~~   86 (244)
T 1qam_A           13 ITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDIL   86 (244)
T ss_dssp             CCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGG
T ss_pred             cCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc---CCCeEEEEChHH
Confidence            4455555555555555677899999999999999999874   7999999999999999998763   246999999997


Q ss_pred             hH
Q 023411          182 DS  183 (282)
Q Consensus       182 ~~  183 (282)
                      +.
T Consensus        87 ~~   88 (244)
T 1qam_A           87 QF   88 (244)
T ss_dssp             GC
T ss_pred             hC
Confidence            64

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.89  E-value=2e-09  Score=97.34  Aligned_cols=100  Identities=13%  Similarity=0.099  Sum_probs=77.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      . .+++++.+|+.+  +       ...|
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-------~~~~  252 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK--S-------IPSA  252 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT--C-------CCCC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC--C-------CCCc
Confidence            34678999999999999999999987 689999999 777766553      2 349999999875  2       1359


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCC---CcEEEEeCCCCCC
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRV---GGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~Lkp---gG~lv~dd~~~~g  237 (282)
                      |+|++....+++     ...++.+.+.   |+|   ||.+++.+...+.
T Consensus       253 D~v~~~~vlh~~~d~~~~~~l~~~~~~---L~p~~~gG~l~i~e~~~~~  298 (358)
T 1zg3_A          253 DAVLLKWVLHDWNDEQSLKILKNSKEA---ISHKGKDGKVIIIDISIDE  298 (358)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHH---TGGGGGGCEEEEEECEECT
T ss_pred             eEEEEcccccCCCHHHHHHHHHHHHHh---CCCCCCCcEEEEEEeccCC
Confidence            999997764432     2567777777   999   9998887766543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.88  E-value=3.9e-09  Score=92.74  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             cCCCEEEEEcccc------cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEE-EEcchhhHHHHHHhC
Q 023411          118 LGAQRCIEVGVYT------GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI-KHGLAADSLKALILN  190 (282)
Q Consensus       118 ~~~~~VLEIG~G~------G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~-~~gd~~~~l~~l~~~  190 (282)
                      .++.+|||+|||+      |.  ..+++.++++++|+++|+++.             + .++++ +++|+.+..  .   
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~--~---  120 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVH--T---  120 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCC--C---
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCC--c---
Confidence            4677999999954      66  556777776789999999998             1 25888 999997632  1   


Q ss_pred             CCCCceeEEEEcCCcc--------------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          191 GEASSYDFAFVDAEKR--------------MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~--------------~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                        .++||+|+++....              .+...++.+.++   |||||.+++..
T Consensus       121 --~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~---LkpGG~~v~~~  171 (290)
T 2xyq_A          121 --ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQK---LALGGSIAVKI  171 (290)
T ss_dssp             --SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             --cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHh---cCCCcEEEEEE
Confidence              36899999975321              123567788888   99999999964

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.87  E-value=8.4e-09  Score=99.33  Aligned_cols=101  Identities=12%  Similarity=0.070  Sum_probs=74.3

Q ss_pred             CCEEEEEcccccHHHHHHHH---HCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          120 AQRCIEVGVYTGYSSLAIAL---VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~---~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ...|+|+|||+|..+...++   ......+|++||.++ +...+++..+.+++.++|++++||..++.  +     ++++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--L-----PEKV  429 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--A-----PEKA  429 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--C-----SSCE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--C-----Cccc
Confidence            45799999999998544444   333224799999997 67789999999999999999999998752  2     5899


Q ss_pred             eEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+|+..--     .+.....+....++   |||||+++=+
T Consensus       430 DIIVSEwMG~fLl~E~mlevL~Ardr~---LKPgGimiPs  466 (637)
T 4gqb_A          430 DIIVSELLGSFADNELSPECLDGAQHF---LKDDGVSIPG  466 (637)
T ss_dssp             EEEECCCCBTTBGGGCHHHHHHHHGGG---EEEEEEEESC
T ss_pred             CEEEEEcCcccccccCCHHHHHHHHHh---cCCCcEEccc
Confidence            99996421     33344444444444   9999997644

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.87  E-value=5.8e-10  Score=98.89  Aligned_cols=96  Identities=10%  Similarity=0.044  Sum_probs=66.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec----CccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER----DARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGE  192 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~----s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~  192 (282)
                      .++.+|||+|||+|.++..+++.    ++|++||+    ++.+++.+.  .+..+ .++++++++ |+.+. +       
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l-~-------  145 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI-P-------  145 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS-C-------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC-C-------
Confidence            45679999999999999999975    57999999    453321110  11111 146999999 87653 1       


Q ss_pred             CCceeEEEEcCCcc--c----cH---HHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEKR--M----YQ---EYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~~--~----~~---~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++||+|++|....  +    ..   ..+..+.++   |||||.++++
T Consensus       146 ~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~---LkpGG~~v~k  190 (305)
T 2p41_A          146 PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENW---LSNNTQFCVK  190 (305)
T ss_dssp             CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHH---CCTTCEEEEE
T ss_pred             cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHH---hCCCCEEEEE
Confidence            46899999986532  1    11   345556666   9999999985

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.87  E-value=2.4e-10  Score=99.42  Aligned_cols=100  Identities=11%  Similarity=-0.022  Sum_probs=67.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH-HHhCCCCcEEEE--EcchhhHHHHHHhCCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIK--HGLAADSLKALILNGEA  193 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~v~~~--~gd~~~~l~~l~~~~~~  193 (282)
                      ..++.+|||+|||+|.++..+++.    ++|+|||+++ ++..+++.. .......+++++  ++|+.+. +       +
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~-------~  138 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL-P-------V  138 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS-C-------C
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC-C-------C
Confidence            346779999999999999999875    6899999998 432221110 000011158889  8898763 1       4


Q ss_pred             CceeEEEEcCCc--ccc----H---HHHHHHHHhhcCCCCCc--EEEEeC
Q 023411          194 SSYDFAFVDAEK--RMY----Q---EYFELLLQLLLQIRVGG--IIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~--~~~----~---~~l~~~~~~~~~LkpgG--~lv~dd  232 (282)
                      ++||+|++|...  .+.    .   ..++.+.++   |+|||  .+++..
T Consensus       139 ~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~---LkpGG~~~fv~kv  185 (265)
T 2oxt_A          139 ERTDVIMCDVGESSPKWSVESERTIKILELLEKW---KVKNPSADFVVKV  185 (265)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH---HHHCTTCEEEEEE
T ss_pred             CCCcEEEEeCcccCCccchhHHHHHHHHHHHHHH---hccCCCeEEEEEe
Confidence            789999998651  111    1   246666677   99999  999854

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.84  E-value=9.5e-11  Score=100.57  Aligned_cols=114  Identities=10%  Similarity=0.137  Sum_probs=79.5

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+.+.....+...+...++.+|||||||+|..+..+++..   ++|+++|+++++++.+++++.   ..++++++++|+.
T Consensus        12 l~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~   85 (245)
T 1yub_A           12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDIL   85 (245)
T ss_dssp             CCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCT
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChh
Confidence            3344444445555555677899999999999999999873   799999999999998887765   2357999999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHH--------------HH----HHHHHhhcCCCCCcEEEE
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQE--------------YF----ELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~--------------~l----~~~~~~~~~LkpgG~lv~  230 (282)
                      +..  ..   ..++| .|+.+.+......              .+    +.+.++   |+|||.+++
T Consensus        86 ~~~--~~---~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rl---l~~~G~l~v  143 (245)
T 1yub_A           86 QFQ--FP---NKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRT---LDIHRTLGL  143 (245)
T ss_dssp             TTT--CC---CSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHH---HCGGGSHHH
T ss_pred             hcC--cc---cCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHH---hCCCCchhh
Confidence            642  10   02578 6676654222111              12    456666   999998755

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.83  E-value=6.5e-09  Score=93.98  Aligned_cols=146  Identities=14%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---C----CCcEEEEEcchhhHHHHHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---V----SHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~----~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      ++++||-||.|.|..+..++++ + ..+++.||+++..++.+++.+....   .    .++++++.+|+.+++...... 
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~-  281 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-  281 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH-
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc-
Confidence            5789999999999999999986 4 3799999999999999999864311   1    246999999999988754322 


Q ss_pred             CCCceeEEEEcCCc-------c------ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHH
Q 023411          192 EASSYDFAFVDAEK-------R------MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKN  258 (282)
Q Consensus       192 ~~~~fDlV~id~~~-------~------~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~  258 (282)
                       .++||+|++|...       .      ...++++.+.+.   |+|||+++.+.-.    +.    .   ...+..+.+.
T Consensus       282 -~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~---L~p~GVlv~Q~~s----~~----~---~~~~~~i~~t  346 (381)
T 3c6k_A          282 -GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKV---LKQDGKYFTQGNC----VN----L---TEALSLYEEQ  346 (381)
T ss_dssp             -TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHT---EEEEEEEEEEEEE----TT----C---HHHHHHHHHH
T ss_pred             -cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHh---cCCCCEEEEecCC----Cc----c---hhHHHHHHHH
Confidence             4689999999531       0      134577888888   9999999986311    11    0   1234555555


Q ss_pred             hhhC-CCeEE----EEeec---CCceEEEEEC
Q 023411          259 LMED-ERVSI----SMVPI---GDGMTICQKR  282 (282)
Q Consensus       259 ~~~~-~~~~~----~~lp~---~~Gl~~~~k~  282 (282)
                      +.+- +.+..    ..+|.   ..|+.+|.|+
T Consensus       347 l~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          347 LGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             HTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             HHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            5442 44432    23453   4788888874

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.80  E-value=9.7e-09  Score=100.76  Aligned_cols=125  Identities=14%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC---C------------------------------------
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---P------------------------------------  142 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~---~------------------------------------  142 (282)
                      .+.+..+..+..++...++..|||.+||+|.+.+.++...   +                                    
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            3556666666666666778899999999999998877642   1                                    


Q ss_pred             --CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-------cHHHHH
Q 023411          143 --ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-------YQEYFE  213 (282)
Q Consensus       143 --~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-------~~~~l~  213 (282)
                        ...+++|+|+++.+++.|++|+..+|+.+.+++.++|+.+..+..    ..++||+|+++++...       ...++.
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~  328 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL----PKGPYGTVLSNPPYGERLDSEPALIALHS  328 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC----TTCCCCEEEECCCCCC---CCHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc----ccCCCCEEEeCCCccccccchhHHHHHHH
Confidence              125799999999999999999999999988999999998742110    0238999999987432       233344


Q ss_pred             HHHHhhcCCCCCcEEEE
Q 023411          214 LLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       214 ~~~~~~~~LkpgG~lv~  230 (282)
                      .+.+..+.+.|||.+.+
T Consensus       329 ~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          329 LLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHhhCCCCeEEE
Confidence            44333122457886544

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.79  E-value=1.7e-08  Score=86.92  Aligned_cols=117  Identities=16%  Similarity=0.089  Sum_probs=80.2

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      ...++.....+...+...++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.++++    + ..+++++++|+
T Consensus        13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~   85 (249)
T 3ftd_A           13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEVINEDA   85 (249)
T ss_dssp             CEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCT
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcch
Confidence            4556666666666666677889999999999999999985 2 47999999999999999876    2 34699999999


Q ss_pred             hhHH-HHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          181 ADSL-KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       181 ~~~l-~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+.. +.+     .+.+ .|+.+.+..-....+..+.+. ...-+.+++++.
T Consensus        86 ~~~~~~~~-----~~~~-~vv~NlPy~i~~~il~~ll~~-~~~~~~~~~m~Q  130 (249)
T 3ftd_A           86 SKFPFCSL-----GKEL-KVVGNLPYNVASLIIENTVYN-KDCVPLAVFMVQ  130 (249)
T ss_dssp             TTCCGGGS-----CSSE-EEEEECCTTTHHHHHHHHHHT-GGGCSEEEEEEE
T ss_pred             hhCChhHc-----cCCc-EEEEECchhccHHHHHHHHhc-CCCCceEEEEEe
Confidence            7642 211     1233 666676655444444444432 112345566664

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.77  E-value=1.5e-08  Score=88.69  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=64.3

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  178 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g  178 (282)
                      ....++.....+...+...++.+|||||||+|..|..+++..+. +++|+++|+++++++.++++.     ..+++++++
T Consensus        23 ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~   97 (279)
T 3uzu_A           23 NFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAG   97 (279)
T ss_dssp             CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEES
T ss_pred             cccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEEC
Confidence            34566666666666667778889999999999999999987652 355999999999999999883     346999999


Q ss_pred             chhhH
Q 023411          179 LAADS  183 (282)
Q Consensus       179 d~~~~  183 (282)
                      |+.+.
T Consensus        98 D~~~~  102 (279)
T 3uzu_A           98 DALTF  102 (279)
T ss_dssp             CGGGC
T ss_pred             ChhcC
Confidence            99875

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.73  E-value=1.4e-08  Score=96.85  Aligned_cols=124  Identities=11%  Similarity=0.105  Sum_probs=92.6

Q ss_pred             CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC--------------CCEEEEEecCccHHHHHHHH
Q 023411           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE--------------SGCLVACERDARSLEVAKKY  163 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~--------------~~~v~~iD~s~~~~~~a~~~  163 (282)
                      .+...+.+....+|..++...++ +|+|.+||+|.+.+.+++.+..              ...++|+|+++.+++.|+.+
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N  302 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN  302 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred             CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence            34556778888888888876544 9999999999998887654421              35899999999999999999


Q ss_pred             HHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc--------------------------------cHHH
Q 023411          164 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--------------------------------YQEY  211 (282)
Q Consensus       164 ~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~--------------------------------~~~~  211 (282)
                      +..+|+..++.+.++|.......     ...+||+|+.+++...                                ...+
T Consensus       303 l~l~gi~~~i~i~~gDtL~~~~~-----~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~F  377 (544)
T 3khk_A          303 MVIRGIDFNFGKKNADSFLDDQH-----PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAW  377 (544)
T ss_dssp             HHHTTCCCBCCSSSCCTTTSCSC-----TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHH
T ss_pred             HHHhCCCcccceeccchhcCccc-----ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHH
Confidence            99999876666688887643111     1478999999866221                                0146


Q ss_pred             HHHHHHhhcCCCCCcEEEE
Q 023411          212 FELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       212 l~~~~~~~~~LkpgG~lv~  230 (282)
                      +..+.++   |+|||.+++
T Consensus       378 l~~~l~~---Lk~gGr~ai  393 (544)
T 3khk_A          378 MLHMLYH---LAPTGSMAL  393 (544)
T ss_dssp             HHHHHHT---EEEEEEEEE
T ss_pred             HHHHHHH---hccCceEEE
Confidence            6777777   999998655

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.66  E-value=7.1e-08  Score=93.09  Aligned_cols=107  Identities=11%  Similarity=-0.016  Sum_probs=72.6

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC------------CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP------------ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~------------~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      .+.|||+|||+|..+...+.+..            ...+|++||.++.+....+... .+++.++|+++++|..++....
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHH-hcCCCCeEEEEeCchhhccccc
Confidence            45899999999999754333221            1349999999997765555444 4899999999999998863211


Q ss_pred             HhCCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          188 ILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ...+ .++.|+|+..--     .+...+.+..+.+.   |+|||+++=+
T Consensus       489 ~~~~-~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~---Lkp~Gi~iP~  533 (745)
T 3ua3_A          489 KDRG-FEQPDIIVSELLGSFGDNELSPECLDGVTGF---LKPTTISIPQ  533 (745)
T ss_dssp             HHTT-CCCCSEEEECCCBTTBGGGSHHHHHHTTGGG---SCTTCEEESC
T ss_pred             ccCC-CCcccEEEEeccccccchhccHHHHHHHHHh---CCCCcEEECC
Confidence            1111 479999997532     23334445555555   9999987644

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.65  E-value=5.6e-08  Score=83.73  Aligned_cols=100  Identities=11%  Similarity=-0.105  Sum_probs=68.3

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +++.....+...+...++.+|||||||+|..|. +.. .+ ..+|+++|+++++++.+++++...   ++++++++|+.+
T Consensus         5 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~   78 (252)
T 1qyr_A            5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMT   78 (252)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhh
Confidence            344555555555666677899999999999999 654 22 234999999999999999876532   369999999987


Q ss_pred             H-HHHHHhCCCCCceeEEEEcCCccccHH
Q 023411          183 S-LKALILNGEASSYDFAFVDAEKRMYQE  210 (282)
Q Consensus       183 ~-l~~l~~~~~~~~fDlV~id~~~~~~~~  210 (282)
                      . ++.....  .+..|.|+.+.+..-...
T Consensus        79 ~~~~~~~~~--~~~~~~vvsNlPY~i~~~  105 (252)
T 1qyr_A           79 FNFGELAEK--MGQPLRVFGNLPYNISTP  105 (252)
T ss_dssp             CCHHHHHHH--HTSCEEEEEECCTTTHHH
T ss_pred             CCHHHhhcc--cCCceEEEECCCCCccHH
Confidence            4 3332100  023467777766544333

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.63  E-value=1.3e-07  Score=90.04  Aligned_cols=126  Identities=10%  Similarity=0.100  Sum_probs=96.2

Q ss_pred             CCCCccCHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHHHCCC--CCEEEEEecCccHHHHHHHHHHHhCCC-
Q 023411           98 GSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVS-  170 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~----~~~~~~VLEIG~G~G~~t~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~g~~-  170 (282)
                      .+...+.+....+|..++.    ..++.+|+|.+||+|.+.+.+++.+..  ...++|+|+++.++..|+.++..+|+. 
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  275 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI  275 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence            3455677888888888887    456779999999999999999988742  468999999999999999999988885 


Q ss_pred             CcEEEEEcchhhHH-HHHHhCCCCCceeEEEEcCCccc----------------c----------HHHHHHHHHhhcCCC
Q 023411          171 HKVKIKHGLAADSL-KALILNGEASSYDFAFVDAEKRM----------------Y----------QEYFELLLQLLLQIR  223 (282)
Q Consensus       171 ~~v~~~~gd~~~~l-~~l~~~~~~~~fDlV~id~~~~~----------------~----------~~~l~~~~~~~~~Lk  223 (282)
                      +++.+.++|..... +.    ....+||+|+.+++...                +          ..++..+.++   |+
T Consensus       276 ~~~~I~~gDtL~~d~p~----~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~---Lk  348 (542)
T 3lkd_A          276 ENQFLHNADTLDEDWPT----QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYH---LK  348 (542)
T ss_dssp             GGEEEEESCTTTSCSCC----SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHT---BC
T ss_pred             CccceEecceecccccc----cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHH---hC
Confidence            46899999987531 11    11478999998865110                0          1256666676   99


Q ss_pred             -CCcEEEE
Q 023411          224 -VGGIIVI  230 (282)
Q Consensus       224 -pgG~lv~  230 (282)
                       +||.+.+
T Consensus       349 ~~gGr~a~  356 (542)
T 3lkd_A          349 QDNGVMAI  356 (542)
T ss_dssp             TTTCEEEE
T ss_pred             CCceeEEE
Confidence             9998755

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.62  E-value=4.4e-07  Score=88.92  Aligned_cols=150  Identities=9%  Similarity=0.037  Sum_probs=95.3

Q ss_pred             ccCChHHHHHHHHHHHcc--CCCCCccCHHHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHHHCCC--CCEEE
Q 023411           79 NVREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQI------LGAQRCIEVGVYTGYSSLAIALVLPE--SGCLV  148 (282)
Q Consensus        79 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ll~~l~~~------~~~~~VLEIG~G~G~~t~~la~~~~~--~~~v~  148 (282)
                      ....++..+.+.+.....  ..+...+.+..+.++..++..      .++.+|+|.|||+|.+.+.++..++.  ..+++
T Consensus       273 r~~~DdL~ell~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~Iy  352 (878)
T 3s1s_A          273 ILTGDELAELIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIW  352 (878)
T ss_dssp             HCSSHHHHHHHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEE
T ss_pred             cCchHHHHHHHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEE
Confidence            344455555544444222  234556778888888887321      24679999999999999999987741  35799


Q ss_pred             EEecCccHHHHH--HHHHHHhCCCC---cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc----------------
Q 023411          149 ACERDARSLEVA--KKYYERAGVSH---KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM----------------  207 (282)
Q Consensus       149 ~iD~s~~~~~~a--~~~~~~~g~~~---~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~----------------  207 (282)
                      |+|+++.+++.|  +.++..+++.+   ...+...|..+.....     .++||+|+.+++...                
T Consensus       353 GvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~-----~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~  427 (878)
T 3s1s_A          353 ANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPED-----FANVSVVVMNPPYVSGVTDPAIKRKFAHKII  427 (878)
T ss_dssp             EECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGG-----GTTEEEEEECCBCCSSCCCHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccc-----cCCCCEEEECCCccccccchhhhhhHHHHhh
Confidence            999999999999  54444322221   1355555655421111     478999999876311                


Q ss_pred             ----------------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          208 ----------------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       208 ----------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                                      +..+++.+.++   |++||.+++  ++.++.
T Consensus       428 ~g~p~~p~s~~G~~DLy~aFIe~Al~l---LKpGGrLAf--IlP~s~  469 (878)
T 3s1s_A          428 QLTGNRPQTLFGQIGVEALFLELVTEL---VQDGTVISA--IMPKQY  469 (878)
T ss_dssp             HHHSSCCSSCSSSCCHHHHHHHHHHHH---SCTTCEEEE--EEETHH
T ss_pred             hhccccccccccccchHHHHHHHHHHh---cCCCcEEEE--EEChHH
Confidence                            12245666677   999998876  444443

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.57  E-value=2.2e-07  Score=80.63  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=67.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++..+||.+||.|..|..+++.   +++|+|+|.++++++.|++ ++.    ++++++++++.+....+...+ .++
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g-~~~   89 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALG-VER   89 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTT-CSC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcC-CCC
Confidence            4557789999999999999999986   5899999999999999998 643    589999999987654444333 368


Q ss_pred             eeEEEEcCCccc
Q 023411          196 YDFAFVDAEKRM  207 (282)
Q Consensus       196 fDlV~id~~~~~  207 (282)
                      +|.|+.|.+...
T Consensus        90 vDgIL~DLGvSS  101 (285)
T 1wg8_A           90 VDGILADLGVSS  101 (285)
T ss_dssp             EEEEEEECSCCH
T ss_pred             cCEEEeCCcccc
Confidence            999999977543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.55  E-value=2.1e-08  Score=81.00  Aligned_cols=90  Identities=13%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||.                 +++|+++.|++.|+++...     +++++++|+.+....   ...+++|
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~---~~~~~~f   64 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQS---AHKESSF   64 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGG---CCCSSCE
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccc---cCCCCCE
Confidence            35678999999985                 2399999999999987532     389999998764210   0015789


Q ss_pred             eEEEEcCCc----cccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEK----RMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~----~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+|++....    .+....++.+.++   |||||.+++.+..
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~---LkpgG~l~~~~~~  103 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARI---LRPGGCLFLKEPV  103 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHH---EEEEEEEEEEEEE
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHH---CCCCEEEEEEccc
Confidence            999986542    4557788999888   9999999996543

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.35  E-value=3.4e-07  Score=79.48  Aligned_cols=104  Identities=15%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ..+..+||+-+|||..++.+++.   +.+++.||.++...+..++|++.   .++++++++|+...+..+...  ..+||
T Consensus        90 ~n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~--~~~fd  161 (283)
T 2oo3_A           90 INLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPP--PEKRG  161 (283)
T ss_dssp             HSSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSC--TTSCE
T ss_pred             hcCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCC--CCCcc
Confidence            34567999999999999988872   47999999999999999998864   457999999998877765332  24799


Q ss_pred             EEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +||+|++.+   .+...++.+.+ ..++.++|++++
T Consensus       162 LVfiDPPYe~k~~~~~vl~~L~~-~~~r~~~Gi~v~  196 (283)
T 2oo3_A          162 LIFIDPSYERKEEYKEIPYAIKN-AYSKFSTGLYCV  196 (283)
T ss_dssp             EEEECCCCCSTTHHHHHHHHHHH-HHHHCTTSEEEE
T ss_pred             EEEECCCCCCCcHHHHHHHHHHH-hCccCCCeEEEE
Confidence            999999865   35555555554 233778999887

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.33  E-value=2.2e-06  Score=76.08  Aligned_cols=86  Identities=23%  Similarity=0.149  Sum_probs=68.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++..++|..+|.|..|..+++.++++++|+|+|.++++++.++ .+    ..++++++++++.+....+...+-.++
T Consensus        54 ~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~~~~  128 (347)
T 3tka_A           54 NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDLIGK  128 (347)
T ss_dssp             CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTCTTC
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCCCCc
Confidence            3467789999999999999999999877899999999999999884 33    246899999999877665544332247


Q ss_pred             eeEEEEcCCcc
Q 023411          196 YDFAFVDAEKR  206 (282)
Q Consensus       196 fDlV~id~~~~  206 (282)
                      +|.|+.|-+..
T Consensus       129 vDgILfDLGVS  139 (347)
T 3tka_A          129 IDGILLDLGVS  139 (347)
T ss_dssp             EEEEEEECSCC
T ss_pred             ccEEEECCccC
Confidence            99999986533

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.33  E-value=2.2e-06  Score=66.93  Aligned_cols=85  Identities=15%  Similarity=0.053  Sum_probs=60.5

Q ss_pred             CCCEEEEEccccc-HHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++.+|||||||.| ..+.+|++..  +..|+++|++|..++                +++.|..+....+     -+.||
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~-----Y~~~D   91 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEI-----YRGAA   91 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHH-----HTTEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccc-----cCCcC
Confidence            4569999999999 5999999753  578999999998764                7888887643332     25899


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|+.-.++.+...++-.+.+-     -|.-+++-
T Consensus        92 LIYsirPP~El~~~i~~lA~~-----v~adliI~  120 (153)
T 2k4m_A           92 LIYSIRPPAEIHSSLMRVADA-----VGARLIIK  120 (153)
T ss_dssp             EEEEESCCTTTHHHHHHHHHH-----HTCEEEEE
T ss_pred             EEEEcCCCHHHHHHHHHHHHH-----cCCCEEEE
Confidence            997766656555555555443     34455554

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.99  E-value=2.7e-05  Score=73.94  Aligned_cols=104  Identities=8%  Similarity=0.019  Sum_probs=80.5

Q ss_pred             CCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCC------------CCEEEEEecCccHHHHHHHHHH
Q 023411           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE------------SGCLVACERDARSLEVAKKYYE  165 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~------------~~~v~~iD~s~~~~~~a~~~~~  165 (282)
                      .+...+.+....++..++...++.+|+|-+||+|.+.+.+.+.+..            ...++|+|+++.....|+-++-
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            3456778888999999998888899999999999998887765432            2469999999999999999998


Q ss_pred             HhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411          166 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       166 ~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      .+|... ..+.++|......  ...++..+||+|+.+++
T Consensus       276 lhg~~~-~~I~~~dtL~~~~--~~~~~~~~fD~Il~NPP  311 (530)
T 3ufb_A          276 LHGLEY-PRIDPENSLRFPL--REMGDKDRVDVILTNPP  311 (530)
T ss_dssp             HHTCSC-CEEECSCTTCSCG--GGCCGGGCBSEEEECCC
T ss_pred             hcCCcc-ccccccccccCch--hhhcccccceEEEecCC
Confidence            888764 5778888764211  11111358999999876

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.97  E-value=9.1e-06  Score=70.07  Aligned_cols=105  Identities=14%  Similarity=0.105  Sum_probs=63.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|||+|||+|.++.+++...+ ...++++|+.-+....... ....+.  ++..+.+++ +... +    ..++|
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~-~~~~g~--~ii~~~~~~-dv~~-l----~~~~~  141 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMN-VQSLGW--NIITFKDKT-DIHR-L----EPVKC  141 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCC-CCBTTG--GGEEEECSC-CTTT-S----CCCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCcccccc-cCcCCC--CeEEEeccc-eehh-c----CCCCc
Confidence            45677999999999999999887543 3578888877442100000 000011  234455554 2211 1    15789


Q ss_pred             eEEEEcCCcc----cc-----HHHHHHHHHhhcCCCCC-cEEEEeCCCC
Q 023411          197 DFAFVDAEKR----MY-----QEYFELLLQLLLQIRVG-GIIVIDNVLW  235 (282)
Q Consensus       197 DlV~id~~~~----~~-----~~~l~~~~~~~~~Lkpg-G~lv~dd~~~  235 (282)
                      |+|++|..+.    ..     ...++.+.++   |+|| |.+|+ .++.
T Consensus       142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~---LkpG~G~FV~-KVf~  186 (277)
T 3evf_A          142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKW---LACGVDNFCV-KVLA  186 (277)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHH---HTTCCSEEEE-EESC
T ss_pred             cEEEecCccCcCchHHHHHHHHHHHHHHHHH---hCCCCCeEEE-EecC
Confidence            9999997533    11     1234556677   9999 99999 4554

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.88  E-value=2.9e-05  Score=69.91  Aligned_cols=84  Identities=8%  Similarity=0.060  Sum_probs=59.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+||+.|++|..+++.   +++|++||+.+-. ..    +.   ...+|+++++|+.+..+.      .++|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~-~~----l~---~~~~V~~~~~d~~~~~~~------~~~~  271 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMA-QS----LM---DTGQVTWLREDGFKFRPT------RSNI  271 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCC-HH----HH---TTTCEEEECSCTTTCCCC------SSCE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcC-hh----hc---cCCCeEEEeCccccccCC------CCCc
Confidence            357889999999999999999875   6899999986522 11    11   124699999998775431      4689


Q ss_pred             eEEEEcCCccccHHHHHHHHHh
Q 023411          197 DFAFVDAEKRMYQEYFELLLQL  218 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~  218 (282)
                      |+|++|.... .......+.+.
T Consensus       272 D~vvsDm~~~-p~~~~~l~~~w  292 (375)
T 4auk_A          272 SWMVCDMVEK-PAKVAALMAQW  292 (375)
T ss_dssp             EEEEECCSSC-HHHHHHHHHHH
T ss_pred             CEEEEcCCCC-hHHhHHHHHHH
Confidence            9999998743 23334444443

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.84  E-value=6.3e-06  Score=70.16  Aligned_cols=99  Identities=16%  Similarity=0.154  Sum_probs=62.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHH--CCC-CCEEEEEec--CccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALV--LPE-SGCLVACER--DARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN  190 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~--~~~-~~~v~~iD~--s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~  190 (282)
                      ..++.+|||+||+.|.|+.++++.  +.. .+.++++|+  .|-..      . ..|+ +-++++++ |+.+..      
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~------~-~~Gv-~~i~~~~G~Df~~~~------  136 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM------Q-SYGW-NIVTMKSGVDVFYKP------  136 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC------C-STTG-GGEEEECSCCGGGSC------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc------c-CCCc-eEEEeeccCCccCCC------
Confidence            457889999999999999999986  321 255666662  22100      0 0111 12466667 987621      


Q ss_pred             CCCCceeEEEEcCCccc---------cHHHHHHHHHhhcCCCCCc-EEEEeCCCC
Q 023411          191 GEASSYDFAFVDAEKRM---------YQEYFELLLQLLLQIRVGG-IIVIDNVLW  235 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~---------~~~~l~~~~~~~~~LkpgG-~lv~dd~~~  235 (282)
                        ..++|+|++|..+..         ....++.+.++   |+||| .+++. ++-
T Consensus       137 --~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~---Lk~gG~~FvvK-VFq  185 (269)
T 2px2_A          137 --SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDW---LSRGPKEFCIK-ILC  185 (269)
T ss_dssp             --CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH---HTTCCSEEEEE-ESC
T ss_pred             --CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHH---hhcCCcEEEEE-ECC
Confidence              358999999975321         11245666666   99999 88884 443

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.81  E-value=4.8e-06  Score=71.89  Aligned_cols=102  Identities=14%  Similarity=0.059  Sum_probs=62.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|||+|||.|.++.+++...+ ...|+++|+.......+.. ....+  .++.....+. +.. .+    ..+++
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~-~~~~g--~~ii~~~~~~-dv~-~l----~~~~~  157 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIM-RTTLG--WNLIRFKDKT-DVF-NM----EVIPG  157 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTT--GGGEEEECSC-CGG-GS----CCCCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCccccccc-cccCC--CceEEeeCCc-chh-hc----CCCCc
Confidence            45777999999999999999987554 4578999997653211110 00011  1223333222 111 11    15799


Q ss_pred             eEEEEcCCcc----c-----cHHHHHHHHHhhcCCCCC--cEEEEe
Q 023411          197 DFAFVDAEKR----M-----YQEYFELLLQLLLQIRVG--GIIVID  231 (282)
Q Consensus       197 DlV~id~~~~----~-----~~~~l~~~~~~~~~Lkpg--G~lv~d  231 (282)
                      |+|++|..+.    .     ....++.+..+   |+||  |.+|+.
T Consensus       158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~---Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQW---LQEGNYTEFCIK  200 (282)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHH---HHHHCCCEEEEE
T ss_pred             CEEEecCccCCCChHHHHHHHHHHHHHHHHH---cCCCCCCcEEEE
Confidence            9999997643    1     11245555666   9999  999995

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.74  E-value=8.6e-05  Score=66.73  Aligned_cols=59  Identities=8%  Similarity=-0.010  Sum_probs=49.9

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      ...|||||.|.|.+|..++.... ..+|++||+++..+...++.+ .   .++++++++|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence            47999999999999999998642 368999999999998888766 2   35799999999875

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.63  E-value=0.00013  Score=61.38  Aligned_cols=106  Identities=15%  Similarity=0.051  Sum_probs=67.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~~~  194 (282)
                      ...+..+|+|+||++|.++.+++...+ ..+|+|+|+-..-.+. -..++..|. +.++|+.+ |.....        ..
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv~~~~--------~~  143 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDVFYLP--------PE  143 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCGGGCC--------CC
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccceeecC--------Cc
Confidence            345778999999999999999887654 3479999986542210 001122333 35999999 864321        46


Q ss_pred             ceeEEEEcCCcccc---------HHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          195 SYDFAFVDAEKRMY---------QEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       195 ~fDlV~id~~~~~~---------~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ++|.|+||......         ...++.+.+   ||++ |-+++ -++-+.
T Consensus       144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~---wL~~-~~fc~-KVl~py  190 (267)
T 3p8z_A          144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEP---WLKN-NQFCI-KVLNPY  190 (267)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGG---GCSS-CEEEE-EESCCC
T ss_pred             cccEEEEecCCCCCChhhhhhHHHHHHHHHHH---hccc-CCEEE-EEccCC
Confidence            79999999763321         123344444   4988 67777 354443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.62  E-value=0.00026  Score=62.03  Aligned_cols=51  Identities=18%  Similarity=0.090  Sum_probs=43.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  171 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~  171 (282)
                      .++..|||++||+|..++.++..   +.+++|+|+++++++.|+++++......
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~~~  284 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVPGF  284 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHSTTC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhcccc
Confidence            57789999999999999988764   4699999999999999999998764433

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.61  E-value=0.00016  Score=62.77  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=65.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCCCCc
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS  195 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~~~~  195 (282)
                      ..+..+|||+||++|.++.+++...+ ..+|+|+|+-..-.+. -..++..+. +-|.++.+ |+....        ..+
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l~--------~~~  160 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYRP--------SEC  160 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSSC--------CCC
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhCC--------CCC
Confidence            45777999999999999998887543 3479999986541100 000011122 23888887 764332        367


Q ss_pred             eeEEEEcCCccc---------cHHHHHHHHHhhcCCCCC-cEEEEeCCC
Q 023411          196 YDFAFVDAEKRM---------YQEYFELLLQLLLQIRVG-GIIVIDNVL  234 (282)
Q Consensus       196 fDlV~id~~~~~---------~~~~l~~~~~~~~~Lkpg-G~lv~dd~~  234 (282)
                      +|+|+||.....         ....++.+.+.   |++| |-+++. ++
T Consensus       161 ~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~w---L~~~~~~f~~K-Vl  205 (321)
T 3lkz_A          161 CDTLLCDIGESSSSAEVEEHRTIRVLEMVEDW---LHRGPREFCVK-VL  205 (321)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHH---HTTCCCEEEEE-ES
T ss_pred             CCEEEEECccCCCChhhhhhHHHHHHHHHHHH---hccCCCcEEEE-Ec
Confidence            999999976221         22245555565   9988 888883 44

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.58  E-value=0.00058  Score=59.33  Aligned_cols=101  Identities=14%  Similarity=0.072  Sum_probs=61.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCCCCc
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS  195 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~~~~  195 (282)
                      ..++.+|||+||++|.|+.++++..+ -..|+++|+.......... ....+. +-+.+..+ |..+    +    ..++
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~----l----~~~~  147 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFT----M----PTEP  147 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTT----S----CCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccCC-ceEEeecCceeee----c----CCCC
Confidence            34678999999999999999997643 3578999987532100000 000000 11333322 2221    1    1478


Q ss_pred             eeEEEEcCCcc----c-----cHHHHHHHHHhhcCCCCC-cEEEEe
Q 023411          196 YDFAFVDAEKR----M-----YQEYFELLLQLLLQIRVG-GIIVID  231 (282)
Q Consensus       196 fDlV~id~~~~----~-----~~~~l~~~~~~~~~Lkpg-G~lv~d  231 (282)
                      +|+|++|..+.    .     ....++.+..+   |+|| |.+|+.
T Consensus       148 ~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~---LkpG~G~FV~K  190 (300)
T 3eld_A          148 SDTLLCDIGESSSNPLVERDRTMKVLENFERW---KHVNTENFCVK  190 (300)
T ss_dssp             CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHH---CCTTCCEEEEE
T ss_pred             cCEEeecCcCCCCCHHHHHHHHHHHHHHHHHH---hcCCCCcEEEE
Confidence            99999997644    1     12345556676   9999 999996

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.50  E-value=0.00011  Score=71.97  Aligned_cols=110  Identities=16%  Similarity=0.135  Sum_probs=74.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-------CC----CCEEEEEecCccHHHHHHHH--------------HHHh-----C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARSLEVAKKY--------------YERA-----G  168 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-------~~----~~~v~~iD~s~~~~~~a~~~--------------~~~~-----g  168 (282)
                      +.-+|+|+|.|+|++.+.+.+.+       |.    ..+++++|..|-..+..++.              ++..     |
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34589999999999988877653       11    15799999977544444432              2221     1


Q ss_pred             -----CC---CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          169 -----VS---HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       169 -----~~---~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                           +.   -.++++.||+.+.++.+.... ...+|.+|+|+....      ...++..+.++   ++|||.+....
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~-~~~~da~flD~f~p~~np~~w~~~~~~~l~~~---~~~g~~~~t~~  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSL-NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARM---TRPGGTFSTFT  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGG-TTCEEEEEECSSCC--CCTTCSHHHHHHHHHH---EEEEEEEEESC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhccccc-CCceeEEEECCCCCCCChhhhhHHHHHHHHHH---hCCCCEEEecc
Confidence                 11   157888999998877652110 268999999986333      36788888888   99999887643

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.47  E-value=0.00052  Score=60.27  Aligned_cols=136  Identities=19%  Similarity=0.177  Sum_probs=80.8

Q ss_pred             CCEEEEEcccccHHHHHHHHH---CCCCC--EEEEEecCc--------c-HHHHHHHHHHHhC--CCC--cEEEEEcchh
Q 023411          120 AQRCIEVGVYTGYSSLAIALV---LPESG--CLVACERDA--------R-SLEVAKKYYERAG--VSH--KVKIKHGLAA  181 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~---~~~~~--~v~~iD~s~--------~-~~~~a~~~~~~~g--~~~--~v~~~~gd~~  181 (282)
                      .-+|+|+|-|+|...+.....   ..+..  +++++|..+        + ..+..........  ...  .+++..||+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            348999999999986543322   12244  567888533        1 2222333333211  012  3567889998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCC-----ccc-cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHH
Q 023411          182 DSLKALILNGEASSYDFAFVDAE-----KRM-YQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNF  255 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~-----~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~  255 (282)
                      +.++.+.    ...+|+||.|+-     ++. ..++++.+.++   ++|||+++--.+  .|             .+|.-
T Consensus       177 ~~l~~l~----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~---~~pgg~laTYta--ag-------------~VRR~  234 (308)
T 3vyw_A          177 KRIKEVE----NFKADAVFHDAFSPYKNPELWTLDFLSLIKER---IDEKGYWVSYSS--SL-------------SVRKS  234 (308)
T ss_dssp             HHGGGCC----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTT---EEEEEEEEESCC--CH-------------HHHHH
T ss_pred             HHHhhhc----ccceeEEEeCCCCcccCcccCCHHHHHHHHHH---hCCCcEEEEEeC--cH-------------HHHHH
Confidence            8777651    358999999975     122 35578888887   999999875221  12             23332


Q ss_pred             HHHhhhCCCeEEEEee-cC--CceEEEEE
Q 023411          256 NKNLMEDERVSISMVP-IG--DGMTICQK  281 (282)
Q Consensus       256 ~~~~~~~~~~~~~~lp-~~--~Gl~~~~k  281 (282)
                      +    ..-+|++.-.| +|  -.|++|++
T Consensus       235 L----~~aGF~V~k~~G~g~KReml~A~~  259 (308)
T 3vyw_A          235 L----LTLGFKVGSSREIGRKRKGTVASL  259 (308)
T ss_dssp             H----HHTTCEEEEEECC---CEEEEEES
T ss_pred             H----HHCCCEEEecCCCCCCCceeEEec
Confidence            2    34588888777 32  35666653

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.42  E-value=0.00036  Score=60.46  Aligned_cols=93  Identities=18%  Similarity=0.214  Sum_probs=62.4

Q ss_pred             CCCEEEEEcc------cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          119 GAQRCIEVGV------YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       119 ~~~~VLEIG~------G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+.+|||+|+      ..|.+  .+.+..|.++.|+++|+.+-..           ..+  .+++||..+...       
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~~-------  166 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVHT-------  166 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEEE-------
T ss_pred             CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEcccccccc-------
Confidence            4679999996      66763  3444556457999999987531           112  559999754211       


Q ss_pred             CCceeEEEEcCCcc--------c------cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          193 ASSYDFAFVDAEKR--------M------YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       193 ~~~fDlV~id~~~~--------~------~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      .++||+|+.|..+.        +      ....++.+.+.   |+|||.+++.  ++.|.
T Consensus       167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~---LkpGGsFvVK--VFQGs  221 (344)
T 3r24_A          167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQK---LALGGSIAVK--ITEHS  221 (344)
T ss_dssp             SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHH---EEEEEEEEEE--ECSSS
T ss_pred             CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHh---CcCCCEEEEE--EecCC
Confidence            48999999985421        1      23345666777   9999999997  44454

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.08  E-value=0.0012  Score=60.45  Aligned_cols=61  Identities=11%  Similarity=0.152  Sum_probs=48.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHH-HHCCCCCEEEEEecCccHHHHHHHHHHH--hCCC-CcEEEEE
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIA-LVLPESGCLVACERDARSLEVAKKYYER--AGVS-HKVKIKH  177 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la-~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~g~~-~~v~~~~  177 (282)
                      ..++..|+|||++.|.+++.++ +..++.++|+++|++|...+..+++++.  ++.. ++++++.
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~  288 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  288 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence            3577899999999999999988 5555448999999999999999999987  3222 4565554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.98  E-value=0.0037  Score=56.54  Aligned_cols=37  Identities=11%  Similarity=0.197  Sum_probs=26.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHC--------------CCCCEEEEEecCccH
Q 023411          120 AQRCIEVGVYTGYSSLAIALVL--------------PESGCLVACERDARS  156 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~--------------~~~~~v~~iD~s~~~  156 (282)
                      +.+|+|+||++|..|+.+...+              ++..+|+.-|+...-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~ND  103 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSND  103 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccc
Confidence            5689999999999998873321              235678888875543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.89  E-value=0.0019  Score=55.25  Aligned_cols=48  Identities=8%  Similarity=0.149  Sum_probs=40.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  168 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g  168 (282)
                      .++..|||..||+|..++.+.+.   +-+++++|+++..++.++++++.++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            57789999999999998887764   4699999999999999999998655

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.88  E-value=0.0036  Score=60.85  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             CEEEEEcccccHHHHHHHHHC-------CC----CCEEEEEec---CccHHHH-----------HHHHHHHhCC------
Q 023411          121 QRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACER---DARSLEV-----------AKKYYERAGV------  169 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~-------~~----~~~v~~iD~---s~~~~~~-----------a~~~~~~~g~------  169 (282)
                      -+|+|+|-|+|...+...+.+       |.    .-+++++|.   +++.+..           +++..+....      
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999987766653       11    146999998   4443332           2222222211      


Q ss_pred             -------CCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----cc-cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM-YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       170 -------~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~-~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                             .-.+++..||+.+.++.+.... ...||.+|.|+..     +. ..+++..+.++   ++|||.+....
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~-~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~---~~~g~~~~t~~  219 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDSL-NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARL---ARPGGTLATFT  219 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGGG-TTCEEEEEECCSCGGGCGGGSCHHHHHHHHHH---EEEEEEEEESC
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhccccc-CCcccEEEECCCCCcCChhhhhHHHHHHHHHH---hCCCCEEEecc
Confidence                   1235678899988777652111 3679999999762     22 45678888888   99999987644

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.79  E-value=0.0047  Score=54.74  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=67.6

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++++||-+|+|. |..+..+++..  +++|+++|.+++..+.+++    .|.+.-+.....+..+.+...     .+
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~-----~g  231 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE-----IG  231 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH-----HS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh-----CC
Confidence            456788999999875 88888899887  4799999999988776654    454321111112222222221     24


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .+|.||.....   ...++.+.++   |+++|.++.-..
T Consensus       232 ~~d~vid~~g~---~~~~~~~~~~---l~~~G~iv~~G~  264 (340)
T 3s2e_A          232 GAHGVLVTAVS---PKAFSQAIGM---VRRGGTIALNGL  264 (340)
T ss_dssp             SEEEEEESSCC---HHHHHHHHHH---EEEEEEEEECSC
T ss_pred             CCCEEEEeCCC---HHHHHHHHHH---hccCCEEEEeCC
Confidence            79999876542   3456778888   999999987543

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.79  E-value=0.0018  Score=58.68  Aligned_cols=77  Identities=8%  Similarity=-0.016  Sum_probs=44.6

Q ss_pred             CCEEEEEcccccHHHHHHHHH-------------C---CCCCEEEEEecC-----------ccHHHHHHHHHHHhCCCCc
Q 023411          120 AQRCIEVGVYTGYSSLAIALV-------------L---PESGCLVACERD-----------ARSLEVAKKYYERAGVSHK  172 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~-------------~---~~~~~v~~iD~s-----------~~~~~~a~~~~~~~g~~~~  172 (282)
                      .-+|+|+||++|..|+.+...             .   ++..+|+.-|+.           +.+.+..   -+..|....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~---~~~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNL---EKENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHH---HHHTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhh---hhhccCCCC
Confidence            468999999999999988776             1   124578888875           2222221   112232122


Q ss_pred             EEEEEcchhhHHHHHHhCCCCCceeEEEEc
Q 023411          173 VKIKHGLAADSLKALILNGEASSYDFAFVD  202 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id  202 (282)
                      ..|+.|..-.+...+.   ..+++|+|+..
T Consensus       130 ~~f~~gvpgSFy~rlf---p~~S~d~v~Ss  156 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLF---PEESMHFLHSC  156 (384)
T ss_dssp             SEEEEECCSCTTSCCS---CTTCEEEEEEE
T ss_pred             ceEEEecchhhhhccC---CCCceEEEEec
Confidence            3566554433221111   15899999975

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.78  E-value=0.0019  Score=57.80  Aligned_cols=75  Identities=13%  Similarity=0.053  Sum_probs=54.8

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      .+|+|+.||.|.+++.+.++--+-..++++|+++.+++..+.|+..      ..++++|+.+.......   ...+|+|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~---~~~~D~l~   73 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFD---RLSFDMIL   73 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHH---HHCCSEEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcC---cCCcCEEE
Confidence            4899999999999999987631012699999999999888887642      35678888775432110   12689999


Q ss_pred             EcCC
Q 023411          201 VDAE  204 (282)
Q Consensus       201 id~~  204 (282)
                      .+.+
T Consensus        74 ~gpP   77 (343)
T 1g55_A           74 MSPP   77 (343)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            8765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.74  E-value=0.0035  Score=56.28  Aligned_cols=102  Identities=21%  Similarity=0.276  Sum_probs=65.9

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|.+.-+.....+..+.+..+.    .
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G--a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~~----~  256 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCG--ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDPVAAIKEIT----D  256 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT--CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHH----cCCCEEecCCccCHHHHHHHhc----C
Confidence            456788999999875 777888888764  5 79999999988877754    3433111111112222222221    2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +.+|+||-....   ...++...++   |+++|.++.=..
T Consensus       257 gg~D~vid~~g~---~~~~~~~~~~---l~~~G~iv~~G~  290 (371)
T 1f8f_A          257 GGVNFALESTGS---PEILKQGVDA---LGILGKIAVVGA  290 (371)
T ss_dssp             SCEEEEEECSCC---HHHHHHHHHT---EEEEEEEEECCC
T ss_pred             CCCcEEEECCCC---HHHHHHHHHH---HhcCCEEEEeCC
Confidence            479999865542   2346777788   999999987443

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.67  E-value=0.0061  Score=55.15  Aligned_cols=101  Identities=13%  Similarity=0.028  Sum_probs=68.0

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH-HHhC-CCCCceeE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA-LILN-GEASSYDF  198 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~-l~~~-~~~~~fDl  198 (282)
                      .+|+|+.||.|.+++-+.++-  -..+.++|+++.+.+..+.|+.      ...++++|+.+.... +... .....+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            489999999999999988762  1347799999998887777653      367888998775322 2100 01368999


Q ss_pred             EEEcCCccc----------------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          199 AFVDAEKRM----------------YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       199 V~id~~~~~----------------~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+.+.+...                +..+++.+..    ++|. +++++||-
T Consensus        75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~----~~P~-~~v~ENV~  121 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSE----LQPL-FFLAENVP  121 (376)
T ss_dssp             EEECCCCCTTC-------CHHHHHHHHHHHHHHHH----HCCS-EEEEEECT
T ss_pred             EEecCCCCCcccccCCCCCCchHHHHHHHHHHHHH----hCCC-EEEEecch
Confidence            998766211                2223333333    6885 88899984

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.65  E-value=0.0046  Score=56.17  Aligned_cols=107  Identities=16%  Similarity=0.289  Sum_probs=68.3

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch-hhHHHHHHhC
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILN  190 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~l~~~  190 (282)
                      .+...++++||-+|+|. |..+..+++..+  + +|+++|.+++.++.+++    .|. +-+.....+. .+.+..+.  
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~--  250 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLG--AACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL--  250 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH--
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh--
Confidence            44566889999999876 778888888764  5 99999999988776653    343 1111111222 22233222  


Q ss_pred             CCCCceeEEEEcCCccc-----------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          191 GEASSYDFAFVDAEKRM-----------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~-----------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                       ....+|+||-......           ....++.+.++   |++||.+++=..
T Consensus       251 -~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~---l~~gG~iv~~G~  300 (398)
T 2dph_A          251 -GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDV---VRAGGAIGIPGI  300 (398)
T ss_dssp             -SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHH---EEEEEEEECCSC
T ss_pred             -CCCCCCEEEECCCCccccccccccccccHHHHHHHHHH---HhcCCEEEEecc
Confidence             1237999986554321           12357778888   999999876433

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.65  E-value=0.0026  Score=51.68  Aligned_cols=100  Identities=13%  Similarity=0.177  Sum_probs=60.6

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||.+|+  |.|..+..++...  +++|+++|.+++..+.+++    .|..  . .+..+..+....+......
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~-~~d~~~~~~~~~~~~~~~~  105 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVE--Y-VGDSRSVDFADEILELTDG  105 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCS--E-EEETTCSTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--E-EeeCCcHHHHHHHHHHhCC
Confidence            3456789999994  4566666666654  4799999999877655543    3432  1 1221111222222211112


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+|++|.....    ..++.+.++   |++||.++.=
T Consensus       106 ~~~D~vi~~~g~----~~~~~~~~~---l~~~G~~v~~  136 (198)
T 1pqw_A          106 YGVDVVLNSLAG----EAIQRGVQI---LAPGGRFIEL  136 (198)
T ss_dssp             CCEEEEEECCCT----HHHHHHHHT---EEEEEEEEEC
T ss_pred             CCCeEEEECCch----HHHHHHHHH---hccCCEEEEE
Confidence            479999976542    356777777   9999998874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.64  E-value=0.011  Score=52.74  Aligned_cols=103  Identities=14%  Similarity=0.117  Sum_probs=67.1

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc---hhhHHHHHH
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGL---AADSLKALI  188 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd---~~~~l~~l~  188 (282)
                      .+...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|.+   .++..+   ..+....+.
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~  236 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMG--AAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVE  236 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHH
Confidence            34566788999999875 777888888764  5 89999999987776653    4543   222222   123222222


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ... ...+|+||-.....   ..++...++   |++||.++.=.
T Consensus       237 ~~~-~~g~D~vid~~g~~---~~~~~~~~~---l~~~G~iv~~G  273 (356)
T 1pl8_A          237 GQL-GCKPEVTIECTGAE---ASIQAGIYA---TRSGGTLVLVG  273 (356)
T ss_dssp             HHH-TSCCSEEEECSCCH---HHHHHHHHH---SCTTCEEEECS
T ss_pred             HHh-CCCCCEEEECCCCh---HHHHHHHHH---hcCCCEEEEEe
Confidence            111 25799998655432   346677788   99999998743

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.53  E-value=0.0014  Score=72.47  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCC----CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPE----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      +..+|||||.|+|..+..+...+..    ..+++..|+++.+.+.+++.++...    ++...-|..+..+.     ..+
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~~~-----~~~ 1310 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPAPG-----SLG 1310 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCCC---------
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccccC-----CCC
Confidence            4569999999999988887777642    1379999999999888888876532    22211121110000     146


Q ss_pred             ceeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +||+|+.....+.   ....+..++++   |+|||.+++...
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~l---L~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAAT---LKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC-----------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHh---cCCCcEEEEEec
Confidence            7999998766443   34456666666   999999988754

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.46  E-value=0.0006  Score=61.34  Aligned_cols=80  Identities=9%  Similarity=0.051  Sum_probs=47.5

Q ss_pred             CCEEEEEcccccHHHHHHHHH---------------CCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411          120 AQRCIEVGVYTGYSSLAIALV---------------LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~---------------~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (282)
                      +-+|+|+||++|..|+.+...               -++..+|+.-|+.......+-+.+.......+..|+.|..-.+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            347999999999998876654               23356899999877766555444432110012345544332211


Q ss_pred             HHHHhCCCCCceeEEEEc
Q 023411          185 KALILNGEASSYDFAFVD  202 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id  202 (282)
                      ..+.   ..+++|+||..
T Consensus       132 ~rlf---p~~S~d~v~Ss  146 (359)
T 1m6e_X          132 GRLF---PRNTLHFIHSS  146 (359)
T ss_dssp             SCCS---CTTCBSCEEEE
T ss_pred             hccC---CCCceEEEEeh
Confidence            1111   15899999975

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.35  E-value=0.012  Score=52.12  Aligned_cols=95  Identities=15%  Similarity=0.137  Sum_probs=65.5

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      ..+++|+.||.|..++.+.++-  -..+.++|+++.+++..+.|+...     .   ++|+.+..+..     -..+|+|
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~-----~~~~D~l   75 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT-----IPDHDIL   75 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG-----SCCCSEE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh-----CCCCCEE
Confidence            4589999999999999988752  235889999999998888887421     1   67877653322     2468999


Q ss_pred             EEcCCc------------cc-----cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          200 FVDAEK------------RM-----YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       200 ~id~~~------------~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +.+.+.            .+     +..+++.+..    ++|. +++++||-
T Consensus        76 ~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~----~~P~-~~~~ENV~  122 (327)
T 2c7p_A           76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVRE----KKPK-VVFMENVK  122 (327)
T ss_dssp             EEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHH----HCCS-EEEEEEEG
T ss_pred             EECCCCCCcchhcccCCCcchhhHHHHHHHHHHHh----ccCc-EEEEeCcH
Confidence            986431            01     2334444433    6886 88999984

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.26  E-value=0.023  Score=50.66  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEc--chhhHHHHHHh
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALIL  189 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g--d~~~~l~~l~~  189 (282)
                      .+...++++||-+|+|. |..++.+++..+  ++ |+++|.+++..+.+++. .    ..-+.+...  +..+....+..
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~  246 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPIGLITMLCAKAAG--ACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVE  246 (363)
T ss_dssp             HHTCCTTCCEEEECCSHHHHHHHHHHHHTT--CCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHH
Confidence            34566788999999864 777888888764  55 99999999998888765 2    122333211  12223233322


Q ss_pred             CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ......+|+||-.....   ..++.+.++   |++||.+++=.
T Consensus       247 ~t~g~g~Dvvid~~g~~---~~~~~~~~~---l~~~G~iv~~G  283 (363)
T 3m6i_A          247 SFGGIEPAVALECTGVE---SSIAAAIWA---VKFGGKVFVIG  283 (363)
T ss_dssp             HTSSCCCSEEEECSCCH---HHHHHHHHH---SCTTCEEEECC
T ss_pred             HhCCCCCCEEEECCCCh---HHHHHHHHH---hcCCCEEEEEc
Confidence            21235899998655422   346777788   99999998744

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.22  E-value=0.0087  Score=53.79  Aligned_cols=106  Identities=20%  Similarity=0.188  Sum_probs=68.4

Q ss_pred             HHHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh--
Q 023411          113 MLVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL--  189 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~--  189 (282)
                      ..+...++++||-+|+|. |..++.+++..+ ..+|+++|.+++..+.+++    .|...   ++.....+....+..  
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~~~~~~~i~~~~  247 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATA---TVDPSAGDVVEAIAGPV  247 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSE---EECTTSSCHHHHHHSTT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCE---EECCCCcCHHHHHHhhh
Confidence            344566788999999874 777788888764 2399999999988776655    45432   222112222233322  


Q ss_pred             -CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          190 -NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       190 -~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                       .. .+.+|+||-....   ...++.+.++   |++||.+++=..
T Consensus       248 ~~~-~gg~Dvvid~~G~---~~~~~~~~~~---l~~~G~vv~~G~  285 (370)
T 4ej6_A          248 GLV-PGGVDVVIECAGV---AETVKQSTRL---AKAGGTVVILGV  285 (370)
T ss_dssp             SSS-TTCEEEEEECSCC---HHHHHHHHHH---EEEEEEEEECSC
T ss_pred             hcc-CCCCCEEEECCCC---HHHHHHHHHH---hccCCEEEEEec
Confidence             11 2489999865442   2456778888   999999988543

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.20  E-value=0.11  Score=45.46  Aligned_cols=110  Identities=13%  Similarity=0.094  Sum_probs=71.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--CCcEEEEEcchhh-HHHHHHhCC-CCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAAD-SLKALILNG-EAS  194 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--~~~v~~~~gd~~~-~l~~l~~~~-~~~  194 (282)
                      ..+.||++|||.=.....+.  .+++.+++-|| .|+.++..++.+...+.  ..+..++.+|..+ +...+...+ +.+
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            45689999997654433222  24357999999 59999999999986543  4578899999876 333333322 223


Q ss_pred             ceeEEEEcCCc-----cccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          195 SYDFAFVDAEK-----RMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       195 ~fDlV~id~~~-----~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ..=++++.+..     +.....++.+...   +.||+.|+++.+.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~---~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGL---SAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHT---CCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHh---CCCCeEEEEEecC
Confidence            33455555552     2334456666665   8899999998764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.19  E-value=0.034  Score=49.37  Aligned_cols=107  Identities=17%  Similarity=0.222  Sum_probs=65.9

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE-cchhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~-gd~~~~l~~l~~~~  191 (282)
                      .+...++++||-+|+|. |..+..+++..  +++|+++|.+++..+.+++    .|.+.-+.... .+..+.+.......
T Consensus       163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhccc
Confidence            34566788999999864 67778888876  4789999999988777653    45432111110 22222222221100


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ....+|+||-.....   ..++...++   |+++|.++.=.
T Consensus       237 ~g~g~D~vid~~g~~---~~~~~~~~~---l~~~G~iv~~G  271 (352)
T 1e3j_A          237 IGDLPNVTIDCSGNE---KCITIGINI---TRTGGTLMLVG  271 (352)
T ss_dssp             SSSCCSEEEECSCCH---HHHHHHHHH---SCTTCEEEECS
T ss_pred             cCCCCCEEEECCCCH---HHHHHHHHH---HhcCCEEEEEe
Confidence            014699998655432   346677788   99999988743

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.16  E-value=0.017  Score=51.62  Aligned_cols=101  Identities=10%  Similarity=0.090  Sum_probs=65.8

Q ss_pred             HHhhcCCCEEEEEc--ccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC
Q 023411          114 LVQILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG  191 (282)
Q Consensus       114 l~~~~~~~~VLEIG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~  191 (282)
                      .....++++||-+|  .|.|..+..+++..  +++|++++.+++..+.+++    .|..   .++..+..+....+....
T Consensus       158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~  228 (362)
T 2c0c_A          158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEY  228 (362)
T ss_dssp             HTCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHC
T ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhc
Confidence            34556788999999  45688888888876  4799999999887776654    3433   122221112222221111


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                       ...+|+||-....    ..++.+.++   |+++|.++.=
T Consensus       229 -~~g~D~vid~~g~----~~~~~~~~~---l~~~G~iv~~  260 (362)
T 2c0c_A          229 -PEGVDVVYESVGG----AMFDLAVDA---LATKGRLIVI  260 (362)
T ss_dssp             -TTCEEEEEECSCT----HHHHHHHHH---EEEEEEEEEC
T ss_pred             -CCCCCEEEECCCH----HHHHHHHHH---HhcCCEEEEE
Confidence             3579999876553    356777788   9999988874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.15  E-value=0.023  Score=50.92  Aligned_cols=98  Identities=15%  Similarity=0.211  Sum_probs=64.5

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-----chhhHHHHHH
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG-----LAADSLKALI  188 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-----d~~~~l~~l~  188 (282)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++.++.+++    .|..   .++..     +..+.+..+.
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~  259 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAG--AKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKMT  259 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHHh
Confidence            445778999999864 667788888764  5 89999999998887654    3543   12211     1222222221


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeC
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDN  232 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd  232 (282)
                          .+.+|+||-....   ...++.+.++   |+++ |.++.-.
T Consensus       260 ----~~g~D~vid~~g~---~~~~~~~~~~---l~~~~G~iv~~G  294 (374)
T 1cdo_A          260 ----NGGVDFSLECVGN---VGVMRNALES---CLKGWGVSVLVG  294 (374)
T ss_dssp             ----TSCBSEEEECSCC---HHHHHHHHHT---BCTTTCEEEECS
T ss_pred             ----CCCCCEEEECCCC---HHHHHHHHHH---hhcCCcEEEEEc
Confidence                2479999865443   2346677788   9999 9988743

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.08  E-value=0.024  Score=50.82  Aligned_cols=102  Identities=15%  Similarity=0.236  Sum_probs=64.9

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEE--cchhhHHHHHHhCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG  191 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~--gd~~~~l~~l~~~~  191 (282)
                      ...++++||-+|+|. |..++.+++..+  + +|+++|.+++..+.+++    .|...-+....  .+..+.+..+.   
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~---  262 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAG--ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT---  262 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh---
Confidence            445778999999863 677788888764  5 89999999998877654    35431111100  12222222222   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCC
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNV  233 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~  233 (282)
                       .+.+|+||-....   ...++.+.++   |+++ |.+++-..
T Consensus       263 -~~g~Dvvid~~G~---~~~~~~~~~~---l~~~~G~iv~~G~  298 (376)
T 1e3i_A          263 -AGGVDYSLDCAGT---AQTLKAAVDC---TVLGWGSCTVVGA  298 (376)
T ss_dssp             -TSCBSEEEESSCC---HHHHHHHHHT---BCTTTCEEEECCC
T ss_pred             -CCCccEEEECCCC---HHHHHHHHHH---hhcCCCEEEEECC
Confidence             2479999865442   2346677788   9999 99887443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.08  E-value=0.031  Score=50.54  Aligned_cols=107  Identities=19%  Similarity=0.204  Sum_probs=67.6

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc-hhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~~~~l~~l~~~~~  192 (282)
                      +...++++||-+|+|. |..++.+++..+ ..+|+++|.+++.++.+++    .|.. .+.....+ ..+.+..+.   .
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~~~~~~v~~~t---~  251 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGFE-IADLSLDTPLHEQIAALL---G  251 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCE-EEETTSSSCHHHHHHHHH---S
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcchHHHHHHHHh---C
Confidence            4556788999999865 778888888764 2389999999988877654    3542 11111111 222222221   1


Q ss_pred             CCceeEEEEcCCccc------------cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          193 ASSYDFAFVDAEKRM------------YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       193 ~~~fDlV~id~~~~~------------~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...+|+||-......            ....++.+.++   |++||.+++-..
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~G~iv~~G~  301 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQV---TRVAGKIGIPGL  301 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHH---EEEEEEEEECSC
T ss_pred             CCCCCEEEECCCCcccccccccccccchHHHHHHHHHH---HhcCCEEEEecc
Confidence            247999986544321            12357778888   999999987543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.07  E-value=0.056  Score=48.42  Aligned_cols=96  Identities=20%  Similarity=0.263  Sum_probs=64.3

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++++||-+|+|. |..+..+++..  +++|++++.+++..+.+++    .|..   .++.....+....+     .+
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~-----~~  256 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH-----LK  256 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT-----TT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh-----hc
Confidence            456788999999874 77778888876  4789999999998887765    3433   22222222222222     25


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+|+||-.......   ++...++   |+++|.++.=
T Consensus       257 g~Dvvid~~g~~~~---~~~~~~~---l~~~G~iv~~  287 (369)
T 1uuf_A          257 SFDFILNTVAAPHN---LDDFTTL---LKRDGTMTLV  287 (369)
T ss_dssp             CEEEEEECCSSCCC---HHHHHTT---EEEEEEEEEC
T ss_pred             CCCEEEECCCCHHH---HHHHHHH---hccCCEEEEe
Confidence            79999865553322   4556677   9999998864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.07  E-value=0.018  Score=50.95  Aligned_cols=103  Identities=19%  Similarity=0.255  Sum_probs=67.7

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++++||-+|+|. |..+..+++... +.+|+++|.+++..+.+++    .|.+.-+.. ..+..+.+..+.   ...
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~-~~~~~~~v~~~t---~g~  238 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGADAAVKS-GAGAADAIRELT---GGQ  238 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-STTHHHHHHHHH---GGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcC-CCcHHHHHHHHh---CCC
Confidence            456788999999875 777888888764 5799999999988877654    454321111 112222222221   124


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .+|+||-.....   ..++.+.++   |+++|.++.=..
T Consensus       239 g~d~v~d~~G~~---~~~~~~~~~---l~~~G~iv~~G~  271 (345)
T 3jv7_A          239 GATAVFDFVGAQ---STIDTAQQV---VAVDGHISVVGI  271 (345)
T ss_dssp             CEEEEEESSCCH---HHHHHHHHH---EEEEEEEEECSC
T ss_pred             CCeEEEECCCCH---HHHHHHHHH---HhcCCEEEEECC
Confidence            799998655432   356778888   999999987543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.05  E-value=0.087  Score=46.72  Aligned_cols=116  Identities=10%  Similarity=0.108  Sum_probs=77.1

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--------------------CCC
Q 023411          112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------------------VSH  171 (282)
Q Consensus       112 ~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--------------------~~~  171 (282)
                      ..++...+...|+.+|||.......+....+ +.+++-||. |+.++.-++.+...+                    ..+
T Consensus        90 ~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (334)
T 1rjd_A           90 LEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQG  167 (334)
T ss_dssp             HHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECS
T ss_pred             HHHHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCC
Confidence            3333335677999999999998888887544 567888887 888888777777642                    135


Q ss_pred             cEEEEEcchhhH--HHHHHhC-CCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEE-EeCC
Q 023411          172 KVKIKHGLAADS--LKALILN-GEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIV-IDNV  233 (282)
Q Consensus       172 ~v~~~~gd~~~~--l~~l~~~-~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv-~dd~  233 (282)
                      +.+++.+|..+.  +..+... ++.+...+++..+.     .+.....++.+...   . |+|.++ ++-+
T Consensus       168 ~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~---~-~~~~~v~~e~i  234 (334)
T 1rjd_A          168 RYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSK---F-SHGLWISYDPI  234 (334)
T ss_dssp             SEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHH---C-SSEEEEEEEEC
T ss_pred             ceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhh---C-CCcEEEEEecc
Confidence            799999998763  3332222 22356678887776     33345566667665   5 676654 5544

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.04  E-value=0.011  Score=52.16  Aligned_cols=97  Identities=18%  Similarity=0.217  Sum_probs=61.8

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE---cchhhHHHHHHhC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALILN  190 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~---gd~~~~l~~l~~~  190 (282)
                      ...++++||-+|+  |.|..+..++...  +++|+++|.+++.++.+++    .|..  ..+-.   .+..+.+....  
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~--  211 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFD--AAFNYKTVNSLEEALKKAS--  211 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS--EEEETTSCSCHHHHHHHHC--
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCc--EEEecCCHHHHHHHHHHHh--
Confidence            4557789999997  5666666777665  4799999999887766632    3432  22211   12222222221  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                        .+.+|++|.....    ..++...++   |++||.+++=
T Consensus       212 --~~~~d~vi~~~g~----~~~~~~~~~---l~~~G~~v~~  243 (333)
T 1v3u_A          212 --PDGYDCYFDNVGG----EFLNTVLSQ---MKDFGKIAIC  243 (333)
T ss_dssp             --TTCEEEEEESSCH----HHHHHHHTT---EEEEEEEEEC
T ss_pred             --CCCCeEEEECCCh----HHHHHHHHH---HhcCCEEEEE
Confidence              2579999877663    235666677   9999998864

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.04  E-value=0.02  Score=51.29  Aligned_cols=98  Identities=15%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-----chhhHHHHHH
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG-----LAADSLKALI  188 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-----d~~~~l~~l~  188 (282)
                      ...++++||-+|+|. |..++.+++..+  + +|+++|.+++..+.+++    .|.+   .++..     +..+.+..+.
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~t  258 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG--ASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEKT  258 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHHh
Confidence            455788999999864 667778888764  5 89999999998877654    4543   12211     1222222221


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeC
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDN  232 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd  232 (282)
                          .+.+|+||-....   ...++.+.++   |+++ |.++.-.
T Consensus       259 ----~gg~Dvvid~~g~---~~~~~~~~~~---l~~~~G~iv~~G  293 (373)
T 1p0f_A          259 ----NGGVDYAVECAGR---IETMMNALQS---TYCGSGVTVVLG  293 (373)
T ss_dssp             ----TSCBSEEEECSCC---HHHHHHHHHT---BCTTTCEEEECC
T ss_pred             ----CCCCCEEEECCCC---HHHHHHHHHH---HhcCCCEEEEEc
Confidence                2479999865442   2346677787   9999 9988744

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.03  E-value=0.022  Score=50.67  Aligned_cols=106  Identities=18%  Similarity=0.172  Sum_probs=67.2

Q ss_pred             HHHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          113 MLVQILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      ..+...++++||-+|+|. |..+..+++..+  + +|+++|.+++.++.+++    .|..   .++..+..+....+...
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLG--AGRIFAVGSRKHCCDIALE----YGAT---DIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT--CSSEEEECCCHHHHHHHHH----HTCC---EEECGGGSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCc---eEEcCCCcCHHHHHHHH
Confidence            344556788999999874 777788887653  5 89999999887777655    3543   22222122222222221


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .....+|+||-.....   ..++.+.++   |++||.++.=..
T Consensus       231 t~g~g~D~v~d~~g~~---~~~~~~~~~---l~~~G~~v~~G~  267 (352)
T 3fpc_A          231 TDGKGVDKVVIAGGDV---HTFAQAVKM---IKPGSDIGNVNY  267 (352)
T ss_dssp             TTTCCEEEEEECSSCT---THHHHHHHH---EEEEEEEEECCC
T ss_pred             cCCCCCCEEEECCCCh---HHHHHHHHH---HhcCCEEEEecc
Confidence            1134799998644432   236677788   999999987544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.02  E-value=0.0097  Score=52.53  Aligned_cols=102  Identities=18%  Similarity=0.097  Sum_probs=65.1

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ....++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+.   +..|..   .++.....+....+.... 
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~---~~~g~~---~~~~~~~~~~~~~~~~~~-  215 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLV---EELGFD---GAIDYKNEDLAAGLKREC-  215 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH---HTTCCS---EEEETTTSCHHHHHHHHC-
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH---HHcCCC---EEEECCCHHHHHHHHHhc-
Confidence            45567889999998  4677777788775  479999999988766652   223442   122211122222222111 


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+.+|+||.....    ..++.+.++   |+++|.++.=.
T Consensus       216 ~~~~d~vi~~~g~----~~~~~~~~~---l~~~G~iv~~G  248 (336)
T 4b7c_A          216 PKGIDVFFDNVGG----EILDTVLTR---IAFKARIVLCG  248 (336)
T ss_dssp             TTCEEEEEESSCH----HHHHHHHTT---EEEEEEEEECC
T ss_pred             CCCceEEEECCCc----chHHHHHHH---HhhCCEEEEEe
Confidence            3579999876553    356777777   99999988743

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.01  E-value=0.0076  Score=53.40  Aligned_cols=103  Identities=13%  Similarity=0.043  Sum_probs=65.0

Q ss_pred             HhhcCCCEEEEEccc--ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      +...++++||-+|+|  .|..+..+++..  +++|++++.+++..+.+++    .|...   ++.....+....+.....
T Consensus       140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~---~~~~~~~~~~~~~~~~~~  210 (340)
T 3gms_A          140 LNLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAY---VIDTSTAPLYETVMELTN  210 (340)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE---EEETTTSCHHHHHHHHTT
T ss_pred             cccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcE---EEeCCcccHHHHHHHHhC
Confidence            345678899999986  577778888765  4799999999998887765    34331   222211222222221111


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...+|+||-......    .....++   |+++|.++.=..
T Consensus       211 ~~g~Dvvid~~g~~~----~~~~~~~---l~~~G~iv~~G~  244 (340)
T 3gms_A          211 GIGADAAIDSIGGPD----GNELAFS---LRPNGHFLTIGL  244 (340)
T ss_dssp             TSCEEEEEESSCHHH----HHHHHHT---EEEEEEEEECCC
T ss_pred             CCCCcEEEECCCChh----HHHHHHH---hcCCCEEEEEee
Confidence            358999987655332    2233366   999999988544

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.98  E-value=0.029  Score=50.24  Aligned_cols=99  Identities=16%  Similarity=0.235  Sum_probs=64.7

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-----chhhHHHHHH
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG-----LAADSLKALI  188 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-----d~~~~l~~l~  188 (282)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|..   .++..     +..+.+..+.
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~  258 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAG--AARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEMS  258 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHHh
Confidence            445778999999864 667778888764  5 89999999998877653    3443   12211     1222222221


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCC
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNV  233 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~  233 (282)
                          .+.+|+||-....   ...++...++   |+++ |.++.=..
T Consensus       259 ----~~g~D~vid~~g~---~~~~~~~~~~---l~~~~G~iv~~G~  294 (374)
T 2jhf_A          259 ----NGGVDFSFEVIGR---LDTMVTALSC---CQEAYGVSVIVGV  294 (374)
T ss_dssp             ----TSCBSEEEECSCC---HHHHHHHHHH---BCTTTCEEEECSC
T ss_pred             ----CCCCcEEEECCCC---HHHHHHHHHH---hhcCCcEEEEecc
Confidence                2479999865443   2346677788   9999 99887443

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.97  E-value=0.011  Score=52.94  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....++++||-+|+|. |..+..+++..  +++|++++.+++.++.+++    .|...   ++..+..+....+......
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~v~~~~~g  255 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGADH---GINRLEEDWVERVYALTGD  255 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSE---EEETTTSCHHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCCE---EEcCCcccHHHHHHHHhCC
Confidence            3456788999999774 77778888876  4799999999988777654    35432   2222211222222111113


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+|+||-.....    .++.+.++   |++||.+++=..
T Consensus       256 ~g~D~vid~~g~~----~~~~~~~~---l~~~G~iv~~G~  288 (363)
T 3uog_A          256 RGADHILEIAGGA----GLGQSLKA---VAPDGRISVIGV  288 (363)
T ss_dssp             CCEEEEEEETTSS----CHHHHHHH---EEEEEEEEEECC
T ss_pred             CCceEEEECCChH----HHHHHHHH---hhcCCEEEEEec
Confidence            4799998765532    25667778   999999887544

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.90  E-value=0.085  Score=46.47  Aligned_cols=108  Identities=18%  Similarity=0.153  Sum_probs=68.6

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .....++++||-+|+|. |..+..+++... ...++++|.+++.++.+++    .|...-+.....+..+....+..   
T Consensus       155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~---  226 (346)
T 4a2c_A          155 LAQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE---  226 (346)
T ss_dssp             HTTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG---
T ss_pred             HhccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc---
Confidence            33456788999999874 556777888765 3568999999987776654    45443222222333333333321   


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      ...+|+||-....   ...++.+.++   |++||.+++-....
T Consensus       227 ~~g~d~v~d~~G~---~~~~~~~~~~---l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          227 LRFNQLILETAGV---PQTVELAVEI---AGPHAQLALVGTLH  263 (346)
T ss_dssp             GCSSEEEEECSCS---HHHHHHHHHH---CCTTCEEEECCCCS
T ss_pred             cCCcccccccccc---cchhhhhhhe---ecCCeEEEEEeccC
Confidence            3567888765442   2456777888   99999998865543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=95.87  E-value=0.074  Score=46.92  Aligned_cols=105  Identities=18%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             HhhcCCCEEEEEccccc-HHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....++++||-+|+|.+ ..+..+++... +.+|+++|.+++..+.+++    .|...-+.....|..+.+..+.   ..
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t---~g  230 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT---GG  230 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT---TS
T ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc---CC
Confidence            34567889999999864 45566666554 5899999999987665544    4444323333344444333331   13


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+|.++.+....   ..+....++   |+++|.+++-..
T Consensus       231 ~g~d~~~~~~~~~---~~~~~~~~~---l~~~G~~v~~g~  264 (348)
T 4eez_A          231 LGVQSAIVCAVAR---IAFEQAVAS---LKPMGKMVAVAV  264 (348)
T ss_dssp             SCEEEEEECCSCH---HHHHHHHHT---EEEEEEEEECCC
T ss_pred             CCceEEEEeccCc---chhheehee---ecCCceEEEEec
Confidence            5688888776533   346677777   999999887543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.86  E-value=0.035  Score=50.36  Aligned_cols=106  Identities=11%  Similarity=0.088  Sum_probs=62.5

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       117 ~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..++++||-+|+|. |..++.+++..+  + +|+++|.+++..+.+++    .|..   .++..+..+....+.......
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~G--a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAG--ASKVILSEPSEVRRNLAKE----LGAD---HVIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT--CSEEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----cCCC---EEEcCCCCCHHHHHHHHhCCC
Confidence            45778999999864 667777888764  5 99999999988877764    3433   222221122222222211134


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHh-hcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQL-LLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~-~~~LkpgG~lv~dd~  233 (282)
                      .+|+||-.....  ...+..+.+. ++.+++||.+++=..
T Consensus       282 g~D~vid~~g~~--~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVP--QLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCH--HHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCc--HHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            799998654433  1123334344 011599999988443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.86  E-value=0.018  Score=51.03  Aligned_cols=100  Identities=14%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...   ++..+ .+....+......
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~---v~~~~-~~~~~~v~~~~~~  225 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGADI---VLPLE-EGWAKAVREATGG  225 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSE---EEESS-TTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE---EecCc-hhHHHHHHHHhCC
Confidence            3457889999996  4677888888876  4799999999998877765    34332   22222 2222222211113


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|+||-.....    .++.+.++   |+++|.++.=.
T Consensus       226 ~g~Dvvid~~g~~----~~~~~~~~---l~~~G~iv~~G  257 (342)
T 4eye_A          226 AGVDMVVDPIGGP----AFDDAVRT---LASEGRLLVVG  257 (342)
T ss_dssp             SCEEEEEESCC------CHHHHHHT---EEEEEEEEEC-
T ss_pred             CCceEEEECCchh----HHHHHHHh---hcCCCEEEEEE
Confidence            4799998765543    35667777   99999988743

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.82  E-value=0.013  Score=51.75  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++.++.+++    .|..   .++..+..+....+......
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~~~  215 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFTNG  215 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHTTT
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHhCC
Confidence            3457889999994  4577777788775  4799999999887776654    3432   22222222222222221113


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|+||-....    ..++.+.++   |++||.++.=.
T Consensus       216 ~g~D~vid~~g~----~~~~~~~~~---l~~~G~iv~~G  247 (334)
T 3qwb_A          216 KGVDASFDSVGK----DTFEISLAA---LKRKGVFVSFG  247 (334)
T ss_dssp             SCEEEEEECCGG----GGHHHHHHH---EEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHH---hccCCEEEEEc
Confidence            579999876553    246677788   99999988743

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.79  E-value=0.031  Score=50.00  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-----chhhHHHHHH
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG-----LAADSLKALI  188 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-----d~~~~l~~l~  188 (282)
                      ...++++||-+|+|. |..+..+++..+  + +|+++|.+++..+.+++    .|...   ++..     +..+.+..+.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~G--a~~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~~~v~~~~  257 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAG--ASRIIGVDINKDKFARAKE----FGATE---CINPQDFSKPIQEVLIEMT  257 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT--CSEEEEECSCGGGHHHHHH----HTCSE---EECGGGCSSCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHH----cCCce---EeccccccccHHHHHHHHh
Confidence            445778999999764 667777887763  5 89999999998887764    34431   2211     1222222221


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeC
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDN  232 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd  232 (282)
                          .+.+|+||-....   ...++.+.++   |+++ |.++.=.
T Consensus       258 ----~~g~D~vid~~g~---~~~~~~~~~~---l~~~~G~iv~~G  292 (373)
T 2fzw_A          258 ----DGGVDYSFECIGN---VKVMRAALEA---CHKGWGVSVVVG  292 (373)
T ss_dssp             ----TSCBSEEEECSCC---HHHHHHHHHT---BCTTTCEEEECS
T ss_pred             ----CCCCCEEEECCCc---HHHHHHHHHh---hccCCcEEEEEe
Confidence                2479999865443   2346677777   9999 9988744

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.68  E-value=0.021  Score=51.28  Aligned_cols=104  Identities=20%  Similarity=0.218  Sum_probs=65.8

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE--EcchhhHHHHHHhCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILNGE  192 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~--~gd~~~~l~~l~~~~~  192 (282)
                      ...++++||-+|+| .|..++.+++..+ -.+|+++|.+++.++.+++    .|...-+...  ..+..+.+..+.    
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~----  260 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT----  260 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc----
Confidence            44578899999986 3777788888764 2389999999998876653    4543211111  112222222221    


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeCCC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDNVL  234 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd~~  234 (282)
                      .+.+|+||-....   ...++.+.++   |++| |.+++=...
T Consensus       261 ~gg~D~vid~~g~---~~~~~~~~~~---l~~g~G~iv~~G~~  297 (378)
T 3uko_A          261 DGGVDYSFECIGN---VSVMRAALEC---CHKGWGTSVIVGVA  297 (378)
T ss_dssp             TSCBSEEEECSCC---HHHHHHHHHT---BCTTTCEEEECSCC
T ss_pred             CCCCCEEEECCCC---HHHHHHHHHH---hhccCCEEEEEccc
Confidence            3489999865543   2346777788   9997 998875443

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=95.66  E-value=0.06  Score=42.11  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=68.0

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      ..-|||+|-|+|..=-.+.+.+| +-+++.+|..-....        ....+.-.++.||+.+.++...... ..+.-++
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp--------~~~P~~e~~ilGdi~~tL~~~~~r~-g~~a~La  110 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHP--------DSTPPEAQLILGDIRETLPATLERF-GATASLV  110 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCG--------GGCCCGGGEEESCHHHHHHHHHHHH-CSCEEEE
T ss_pred             CCceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCC--------CCCCchHheecccHHHHHHHHHHhc-CCceEEE
Confidence            34799999999999999999998 788999996422110        0122335789999999887642211 3455566


Q ss_pred             EEcCCccc---cHHHH----HHHHHhhcCCCCCcEEEEeCCCC
Q 023411          200 FVDAEKRM---YQEYF----ELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       200 ~id~~~~~---~~~~l----~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      -.|-...+   .....    ..+.++   |.|||++|-+..+.
T Consensus       111 HaD~G~g~~~~d~a~a~~lsplI~~~---la~GGi~vS~~pl~  150 (174)
T 3iht_A          111 HADLGGHNREKNDRFARLISPLIEPH---LAQGGLMVSSDRMY  150 (174)
T ss_dssp             EECCCCSCHHHHHHHHHHHHHHHGGG---EEEEEEEEESSCCC
T ss_pred             EeecCCCCcchhHHHHHhhhHHHHHH---hcCCcEEEeCCccC
Confidence            66654222   11122    233455   99999999988773

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.58  E-value=0.023  Score=50.01  Aligned_cols=100  Identities=13%  Similarity=0.084  Sum_probs=62.9

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +..++++||-+|+  |.|..+..++...  +++|++++.+++.++.+++    .|..  . .+..+..+....+......
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~--~-~~d~~~~~~~~~i~~~~~~  212 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCH--H-TINYSTQDFAEVVREITGG  212 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS--E-EEETTTSCHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC--E-EEECCCHHHHHHHHHHhCC
Confidence            3457789999995  5677777777765  4799999999887776654    3432  1 2221111222222111012


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+|++|.....    ..++.+.++   |+++|.++.=
T Consensus       213 ~~~d~vi~~~g~----~~~~~~~~~---l~~~G~iv~~  243 (333)
T 1wly_A          213 KGVDVVYDSIGK----DTLQKSLDC---LRPRGMCAAY  243 (333)
T ss_dssp             CCEEEEEECSCT----TTHHHHHHT---EEEEEEEEEC
T ss_pred             CCCeEEEECCcH----HHHHHHHHh---hccCCEEEEE
Confidence            479999976554    235677777   9999988774

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.036  Score=49.10  Aligned_cols=100  Identities=11%  Similarity=0.075  Sum_probs=63.1

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE---cchhhHHHHHHhC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALILN  190 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~---gd~~~~l~~l~~~  190 (282)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|..  ..+-.   .+..+.+....  
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~--~~~d~~~~~~~~~~~~~~~--  235 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGE--VFIDFTKEKDIVGAVLKAT--  235 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCC--EEEETTTCSCHHHHHHHHH--
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCc--eEEecCccHhHHHHHHHHh--
Confidence            3457789999998  4677777777765  4799999999887766554    3432  11111   12222222221  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                        .+.+|+||.....   ...++.+.+.   |+++|.++.=..
T Consensus       236 --~~~~D~vi~~~g~---~~~~~~~~~~---l~~~G~iv~~g~  270 (347)
T 2hcy_A          236 --DGGAHGVINVSVS---EAAIEASTRY---VRANGTTVLVGM  270 (347)
T ss_dssp             --TSCEEEEEECSSC---HHHHHHHTTS---EEEEEEEEECCC
T ss_pred             --CCCCCEEEECCCc---HHHHHHHHHH---HhcCCEEEEEeC
Confidence              2379999876553   2345666666   999999887433

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.55  E-value=0.015  Score=51.12  Aligned_cols=102  Identities=13%  Similarity=0.046  Sum_probs=64.9

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +..++++||-+|+  |.|..+..+++..  +++|++++.+++.++.+++    .|..   .++..+..+....+......
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~~~  207 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAW---ETIDYSHEDVAKRVLELTDG  207 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHhCC
Confidence            3457889999883  4577777788765  4799999999988877664    3432   22222222222222221113


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+|+||-.....    .++.+.++   |++||.++.-..
T Consensus       208 ~g~Dvvid~~g~~----~~~~~~~~---l~~~G~iv~~g~  240 (325)
T 3jyn_A          208 KKCPVVYDGVGQD----TWLTSLDS---VAPRGLVVSFGN  240 (325)
T ss_dssp             CCEEEEEESSCGG----GHHHHHTT---EEEEEEEEECCC
T ss_pred             CCceEEEECCChH----HHHHHHHH---hcCCCEEEEEec
Confidence            5799998765542    35667777   999999888543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.51  E-value=0.056  Score=47.72  Aligned_cols=100  Identities=23%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++++||-+|+| .|..+..+++..  +.+|++++.+++.++.+++    .|...-+.....+..+.+...     .+
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~-----~~  229 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK-----VG  229 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH-----HS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH-----hC
Confidence            45678899999986 477777788776  4799999999988776653    344311111011222222222     14


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+|+||.....   ...++...++   |+++|.++.=.
T Consensus       230 ~~d~vid~~g~---~~~~~~~~~~---l~~~G~~v~~g  261 (339)
T 1rjw_A          230 GVHAAVVTAVS---KPAFQSAYNS---IRRGGACVLVG  261 (339)
T ss_dssp             SEEEEEESSCC---HHHHHHHHHH---EEEEEEEEECC
T ss_pred             CCCEEEECCCC---HHHHHHHHHH---hhcCCEEEEec
Confidence            79999876543   2346677788   99999988643

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.49  E-value=0.022  Score=50.65  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             hhcCCCEEEEEc--ccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-+|  .|.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+....    .
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~----~  233 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET----G  233 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----S
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh----C
Confidence            345788999985  34577777788776  4799999999988877765    3433111111122222222222    3


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+|+||......    .++...+.   |+++|.++.=..
T Consensus       234 ~g~Dvvid~~g~~----~~~~~~~~---l~~~G~iv~~g~  266 (353)
T 4dup_A          234 QGVDIILDMIGAA----YFERNIAS---LAKDGCLSIIAF  266 (353)
T ss_dssp             SCEEEEEESCCGG----GHHHHHHT---EEEEEEEEECCC
T ss_pred             CCceEEEECCCHH----HHHHHHHH---hccCCEEEEEEe
Confidence            6799998766543    35666777   999999887443

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.44  E-value=0.044  Score=48.53  Aligned_cols=103  Identities=12%  Similarity=0.056  Sum_probs=66.2

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEE-EEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH-HHHhCCCCCcee
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCL-VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK-ALILNGEASSYD  197 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v-~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~-~l~~~~~~~~fD  197 (282)
                      .-+++|+.||.|..++-+..+--+.-.+ .++|+++.+.+.-+.|+..       .++++|+.+..+ .+.    ...+|
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-------~~~~~DI~~~~~~~i~----~~~~D   78 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-------EVQVKNLDSISIKQIE----SLNCN   78 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-------CCBCCCTTTCCHHHHH----HTCCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-------CcccCChhhcCHHHhc----cCCCC
Confidence            4589999999999999888752101246 7999999998888887742       156778766533 221    13689


Q ss_pred             EEEEcCCcccc---------------HHHHHHHHH-hhcCC--CCCcEEEEeCCC
Q 023411          198 FAFVDAEKRMY---------------QEYFELLLQ-LLLQI--RVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~~---------------~~~l~~~~~-~~~~L--kpgG~lv~dd~~  234 (282)
                      +++...+...+               ...+..+.+ +...+  +|. +++++||.
T Consensus        79 il~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~  132 (327)
T 3qv2_A           79 TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPK-HIFIENVP  132 (327)
T ss_dssp             EEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEEECG
T ss_pred             EEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCC-EEEEEchh
Confidence            99875442221               123334444 43335  564 88999984

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.42  E-value=0.083  Score=46.74  Aligned_cols=92  Identities=14%  Similarity=0.177  Sum_probs=63.9

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++++||-+|+|. |..+..+++..  +++|++++.+++..+.+++    .|.+.   ++ .+. +.   +     ..
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---v~-~~~-~~---~-----~~  233 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGVKH---FY-TDP-KQ---C-----KE  233 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTCSE---EE-SSG-GG---C-----CS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCCCe---ec-CCH-HH---H-----hc
Confidence            556788999999875 77788888876  4799999999998877654    45432   22 332 11   1     24


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+|+||-......   .++.+.++   |+++|.++.=.
T Consensus       234 ~~D~vid~~g~~~---~~~~~~~~---l~~~G~iv~~G  265 (348)
T 3two_A          234 ELDFIISTIPTHY---DLKDYLKL---LTYNGDLALVG  265 (348)
T ss_dssp             CEEEEEECCCSCC---CHHHHHTT---EEEEEEEEECC
T ss_pred             CCCEEEECCCcHH---HHHHHHHH---HhcCCEEEEEC
Confidence            8999986554332   25566677   99999998843

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.40  E-value=0.017  Score=51.04  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=63.2

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc---chhhHHHHHHhC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILN  190 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g---d~~~~l~~l~~~  190 (282)
                      ...++++||-+|+  |.|..+..+++..  +++|++++.+++.++.+++.   .|..  ..+-..   +..+.+....  
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~---~g~~--~~~d~~~~~~~~~~~~~~~--  222 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTK---FGFD--DAFNYKEESDLTAALKRCF--  222 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT---SCCS--EEEETTSCSCSHHHHHHHC--
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH---cCCc--eEEecCCHHHHHHHHHHHh--
Confidence            4457889999997  4677777777765  47999999998877666532   2432  112111   2222333221  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                        .+.+|+||.....    ..++.+.++   |++||.+++=
T Consensus       223 --~~~~d~vi~~~g~----~~~~~~~~~---l~~~G~~v~~  254 (345)
T 2j3h_A          223 --PNGIDIYFENVGG----KMLDAVLVN---MNMHGRIAVC  254 (345)
T ss_dssp             --TTCEEEEEESSCH----HHHHHHHTT---EEEEEEEEEC
T ss_pred             --CCCCcEEEECCCH----HHHHHHHHH---HhcCCEEEEE
Confidence              2579999876553    246667777   9999998873

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.40  E-value=0.017  Score=50.66  Aligned_cols=101  Identities=17%  Similarity=0.114  Sum_probs=62.7

Q ss_pred             hhcCCCEEEEEc--ccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-+|  .|.|..+..+++..  +++|++++.+++..+.+++    .|..  . ++..+..+....+......
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~--~-~~~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAW--Q-VINYREEDLVERLKEITGG  207 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS--E-EEETTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC--E-EEECCCccHHHHHHHHhCC
Confidence            345778999998  34566666677654  4799999999887777654    2432  1 2221111222222211113


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|++|.... .   ..++.+.++   |+++|.++.=.
T Consensus       208 ~~~D~vi~~~g-~---~~~~~~~~~---l~~~G~iv~~g  239 (327)
T 1qor_A          208 KKVRVVYDSVG-R---DTWERSLDC---LQRRGLMVSFG  239 (327)
T ss_dssp             CCEEEEEECSC-G---GGHHHHHHT---EEEEEEEEECC
T ss_pred             CCceEEEECCc-h---HHHHHHHHH---hcCCCEEEEEe
Confidence            47999997766 2   235677777   99999988743

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.35  E-value=0.035  Score=48.78  Aligned_cols=97  Identities=14%  Similarity=0.015  Sum_probs=63.3

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +|||+-||.|.+++-+-++   +. .+.++|+++.+.+.-+.|+.       -.++.+|+.+.....     -..+|+++
T Consensus         2 kvidLFsG~GG~~~G~~~a---G~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~-----~~~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDE-----FPKCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT---TCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGG-----SCCCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhh-----CCcccEEE
Confidence            7999999999999888764   23 47899999998877776642       367889987753322     35789887


Q ss_pred             EcCC------------ccc-cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          201 VDAE------------KRM-YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       201 id~~------------~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ...+            ..+ ....+..+.++...++|. +++++||-
T Consensus        67 ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~ENV~  112 (331)
T 3ubt_Y           67 GGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVK  112 (331)
T ss_dssp             CCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEECC
T ss_pred             ecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe-EEEeeeec
Confidence            5432            111 112222222222226886 88999984

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.26  E-value=0.041  Score=48.64  Aligned_cols=101  Identities=17%  Similarity=0.172  Sum_probs=64.7

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++.++.+++    .|...   ++..+..+....+......
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~~---~~d~~~~~~~~~~~~~~~~  233 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGADE---TVNYTHPDWPKEVRRLTGG  233 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSE---EEETTSTTHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCCE---EEcCCcccHHHHHHHHhCC
Confidence            3456789999998  5777888888876  4799999999988877654    34331   2222111222222111112


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|+||.... ..   .++.+.++   |+++|.++.=.
T Consensus       234 ~~~d~vi~~~g-~~---~~~~~~~~---l~~~G~~v~~g  265 (343)
T 2eih_A          234 KGADKVVDHTG-AL---YFEGVIKA---TANGGRIAIAG  265 (343)
T ss_dssp             TCEEEEEESSC-SS---SHHHHHHH---EEEEEEEEESS
T ss_pred             CCceEEEECCC-HH---HHHHHHHh---hccCCEEEEEe
Confidence            47999997766 32   35667777   99999888743

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.21  E-value=0.14  Score=45.84  Aligned_cols=102  Identities=16%  Similarity=0.186  Sum_probs=63.9

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc---hhhHHHHHHhCCC
Q 023411          117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL---AADSLKALILNGE  192 (282)
Q Consensus       117 ~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd---~~~~l~~l~~~~~  192 (282)
                      ..++++||-+|+| .|..++.+++..+ ..+|++++.+++..+.+++    .|..   .++..+   ..+....+.....
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~~~  264 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDITH  264 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHHhC
Confidence            4567899999966 3667777888763 1599999999988777653    4543   223222   2222222221111


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ...+|+||-.....   ..++.+.++   |+++|.++.=.
T Consensus       265 g~g~Dvvid~~g~~---~~~~~~~~~---l~~~G~iv~~G  298 (380)
T 1vj0_A          265 GRGADFILEATGDS---RALLEGSEL---LRRGGFYSVAG  298 (380)
T ss_dssp             TSCEEEEEECSSCT---THHHHHHHH---EEEEEEEEECC
T ss_pred             CCCCcEEEECCCCH---HHHHHHHHH---HhcCCEEEEEe
Confidence            23799998655432   235677788   99999988743

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.13  E-value=0.035  Score=49.25  Aligned_cols=104  Identities=15%  Similarity=0.106  Sum_probs=64.4

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      -+++|+.||.|..++-+..+--..-.+.++|+++.+.+.-+.|+..      ..++++|+.+..+....   ...+|+++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~---~~~~D~l~   74 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIK---KWNVDTIL   74 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHH---HTTCCEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhc---cCCCCEEE
Confidence            3799999999999998887521013478999999888777766531      34677888765332211   23689998


Q ss_pred             EcCCc------------cc-cHHHHHHHHHhhcCCC-CCcEEEEeCCC
Q 023411          201 VDAEK------------RM-YQEYFELLLQLLLQIR-VGGIIVIDNVL  234 (282)
Q Consensus       201 id~~~------------~~-~~~~l~~~~~~~~~Lk-pgG~lv~dd~~  234 (282)
                      ...+.            .+ ....+..+.++...++ |. +++++||-
T Consensus        75 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~-~~vlENV~  121 (333)
T 4h0n_A           75 MSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVD-YILMENVK  121 (333)
T ss_dssp             ECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCC-EEEEEECT
T ss_pred             ecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCC-EEEEecch
Confidence            65431            00 1111222233322255 65 88999985

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.12  E-value=0.04  Score=48.93  Aligned_cols=102  Identities=11%  Similarity=0.055  Sum_probs=62.8

Q ss_pred             HhhcCC--CEEEEEcc--cccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          115 VQILGA--QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       115 ~~~~~~--~~VLEIG~--G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      ....++  ++||-.|+  |.|..+..+++..  ++ +|++++.+++..+.+++.   .|..  . ++..+..+....+..
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~--~-~~d~~~~~~~~~~~~  225 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFD--A-AINYKKDNVAEQLRE  225 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCS--E-EEETTTSCHHHHHHH
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCc--e-EEecCchHHHHHHHH
Confidence            345567  89999997  4566666677665  46 999999998766655432   3432  1 222111122222211


Q ss_pred             CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .. .+.+|++|.....    ..++.+.++   |++||.++.=.
T Consensus       226 ~~-~~~~d~vi~~~G~----~~~~~~~~~---l~~~G~iv~~G  260 (357)
T 2zb4_A          226 SC-PAGVDVYFDNVGG----NISDTVISQ---MNENSHIILCG  260 (357)
T ss_dssp             HC-TTCEEEEEESCCH----HHHHHHHHT---EEEEEEEEECC
T ss_pred             hc-CCCCCEEEECCCH----HHHHHHHHH---hccCcEEEEEC
Confidence            11 2379999877663    456777777   99999988743

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.12  E-value=0.03  Score=49.55  Aligned_cols=100  Identities=15%  Similarity=0.109  Sum_probs=64.6

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch-hhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~l~~~~~~  193 (282)
                      .. ++++||-+|+|. |..+..+++...++++|++++.+++..+.+++    .|.+   .++..+. .+....+..   .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~---g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTD---G  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHT---T
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhc---C
Confidence            45 788999999864 66777788776114789999999988777654    3433   2221111 122233321   2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|+||-....   ...++.+.++   |+++|.++.=.
T Consensus       237 ~g~D~vid~~g~---~~~~~~~~~~---l~~~G~iv~~g  269 (344)
T 2h6e_A          237 LGASIAIDLVGT---EETTYNLGKL---LAQEGAIILVG  269 (344)
T ss_dssp             CCEEEEEESSCC---HHHHHHHHHH---EEEEEEEEECC
T ss_pred             CCccEEEECCCC---hHHHHHHHHH---hhcCCEEEEeC
Confidence            379999866543   2346777788   99999988743

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.12  E-value=0.049  Score=48.23  Aligned_cols=101  Identities=14%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             HhhcCCCEEEEEccc--ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc--hhhHHHHHHhC
Q 023411          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL--AADSLKALILN  190 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd--~~~~l~~l~~~  190 (282)
                      +...++++||-+|+|  .|..+..+++... +++|+++|.+++..+.+++    .|..  ..+-..+  ..+....+.  
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~--~~~~~~~~~~~~~~~~~~--  236 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD--YVINASMQDPLAEIRRIT--  236 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS--EEEETTTSCHHHHHHHHT--
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCC--EEecCCCccHHHHHHHHh--
Confidence            345678899999987  5556667776651 4799999999988777654    3432  1221111  111122221  


Q ss_pred             CCC-CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          191 GEA-SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       191 ~~~-~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                        . +.+|+||......   ..++.+.++   |+++|.++.=.
T Consensus       237 --~~~~~d~vi~~~g~~---~~~~~~~~~---l~~~G~iv~~g  271 (347)
T 1jvb_A          237 --ESKGVDAVIDLNNSE---KTLSVYPKA---LAKQGKYVMVG  271 (347)
T ss_dssp             --TTSCEEEEEESCCCH---HHHTTGGGG---EEEEEEEEECC
T ss_pred             --cCCCceEEEECCCCH---HHHHHHHHH---HhcCCEEEEEC
Confidence              2 5899998765532   345566677   99999988743

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.09  E-value=0.042  Score=47.94  Aligned_cols=76  Identities=12%  Similarity=-0.026  Sum_probs=52.3

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ...+++|+-||.|..++.+.++-- ... +.++|+++.+.+.-+.++.      ...++.+|+.+........  .+.+|
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~--~~~~D   85 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQE--WGPFD   85 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHH--TCCCS
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcc--cCCcC
Confidence            455899999999999988877521 122 6999999988776666542      2467889988754322111  24789


Q ss_pred             EEEEcC
Q 023411          198 FAFVDA  203 (282)
Q Consensus       198 lV~id~  203 (282)
                      +++...
T Consensus        86 ll~ggp   91 (295)
T 2qrv_A           86 LVIGGS   91 (295)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            998653

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.08  E-value=0.018  Score=49.07  Aligned_cols=52  Identities=19%  Similarity=0.211  Sum_probs=38.6

Q ss_pred             EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-----------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-----------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+++++|+.+.+..+.    .++||+||+|++...                 ....++.+.++   |+|||.+++.
T Consensus         5 ~~l~~gD~~~~l~~l~----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~---Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDK---LDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             CeEEechHHHHHHhcc----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHH---hcCCeEEEEE
Confidence            5688999998877663    468999999988321                 12345555666   9999999885

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.06  E-value=0.039  Score=49.08  Aligned_cols=101  Identities=10%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +..++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|..   .++..+..+....+......
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~~~~  237 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKKYVGE  237 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHHHHCT
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHHHcCC
Confidence            3457789999996  4566777777765  4799999999887765543    3432   12222112222222111112


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|+||.....    ..++...++   |+++|.++.=.
T Consensus       238 ~~~D~vi~~~G~----~~~~~~~~~---l~~~G~iv~~g  269 (351)
T 1yb5_A          238 KGIDIIIEMLAN----VNLSKDLSL---LSHGGRVIVVG  269 (351)
T ss_dssp             TCEEEEEESCHH----HHHHHHHHH---EEEEEEEEECC
T ss_pred             CCcEEEEECCCh----HHHHHHHHh---ccCCCEEEEEe
Confidence            479999876543    235667777   99999988743

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.99  E-value=0.071  Score=47.47  Aligned_cols=97  Identities=22%  Similarity=0.206  Sum_probs=63.3

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh-hHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA-DSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~-~~l~~l~~~~~  192 (282)
                      +...++++||-+|+|. |..+..+++..  +++|++++.+++.++.+++    .|..   .++..+.. +....+     
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~-----  240 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY-----  240 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS-----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHh-----
Confidence            3456788999999853 66777788775  4789999999998877765    3433   22222212 233333     


Q ss_pred             CCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+.+|+||.....  ..   .++.+.++   |++||.++.=
T Consensus       241 ~~~~D~vid~~g~~~~~---~~~~~~~~---l~~~G~iv~~  275 (360)
T 1piw_A          241 FDTFDLIVVCASSLTDI---DFNIMPKA---MKVGGRIVSI  275 (360)
T ss_dssp             CSCEEEEEECCSCSTTC---CTTTGGGG---EEEEEEEEEC
T ss_pred             hcCCCEEEECCCCCcHH---HHHHHHHH---hcCCCEEEEe
Confidence            2579999865543  22   13445566   9999998864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.87  E-value=0.022  Score=50.24  Aligned_cols=54  Identities=11%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-----------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       171 ~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-----------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++.++++||..+.+..+.    .++||+||+|++...                 ....+..+.++   |+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rv---Lk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKK---LKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHH---CcCCcEEEEE
Confidence            458999999987665442    578999999987421                 23455566666   9999998874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.86  E-value=0.11  Score=46.38  Aligned_cols=97  Identities=15%  Similarity=0.114  Sum_probs=63.1

Q ss_pred             CCCEEEEEc-cc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG-~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ++++||-+| +| .|..+..+++.+. +++|++++.+++..+.+++    .|.+   .++... .+....+... ..+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~-~~~~~~v~~~-~~~g~  240 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAH---HVIDHS-KPLAAEVAAL-GLGAP  240 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCS---EEECTT-SCHHHHHHTT-CSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCC-CCHHHHHHHh-cCCCc
Confidence            567899998 44 5778888888643 5799999999987777654    4543   122111 1222333222 24689


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+||-....   ...++.+.++   |+++|.++.=
T Consensus       241 Dvvid~~g~---~~~~~~~~~~---l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTHT---DKHAAEIADL---IAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSCH---HHHHHHHHHH---SCTTCEEEEC
T ss_pred             eEEEECCCc---hhhHHHHHHH---hcCCCEEEEE
Confidence            988865442   2346778888   9999998863

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.75  E-value=0.13  Score=44.54  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch-hhHHHHHHhCCCC
Q 023411          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEA  193 (282)
Q Consensus       117 ~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~l~~~~~~  193 (282)
                      ..++++||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|..   .++..+. .+....+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh------
Confidence            457789999997  4577788888876  4799999999988777654    3432   2222211 2222222      


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+|+||. ....    .++...++   |+++|.++.=
T Consensus       188 ~~~d~vid-~g~~----~~~~~~~~---l~~~G~~v~~  217 (302)
T 1iz0_A          188 GGLDLVLE-VRGK----EVEESLGL---LAHGGRLVYI  217 (302)
T ss_dssp             TSEEEEEE-CSCT----THHHHHTT---EEEEEEEEEC
T ss_pred             cCceEEEE-CCHH----HHHHHHHh---hccCCEEEEE
Confidence            57999997 5542    35667777   9999988863

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.72  E-value=0.092  Score=46.64  Aligned_cols=99  Identities=11%  Similarity=0.081  Sum_probs=61.8

Q ss_pred             HhhcCC------CEEEEEccc-ccHHH-HHHH-HHCCCCCE-EEEEecCcc---HHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          115 VQILGA------QRCIEVGVY-TGYSS-LAIA-LVLPESGC-LVACERDAR---SLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       115 ~~~~~~------~~VLEIG~G-~G~~t-~~la-~~~~~~~~-v~~iD~s~~---~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      +...++      ++||-+|+| .|..+ +.++ +..  +++ |++++.+++   ..+.+++    .|.+ .+.....+..
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~  234 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVE  234 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGG
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHH
Confidence            345566      899999974 35566 6777 655  455 999999988   7776653    3432 1211111222


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      + +..+     .+.+|+||-.....   ..++.+.++   |+++|.++.=.
T Consensus       235 ~-i~~~-----~gg~Dvvid~~g~~---~~~~~~~~~---l~~~G~iv~~g  273 (357)
T 2b5w_A          235 D-VPDV-----YEQMDFIYEATGFP---KHAIQSVQA---LAPNGVGALLG  273 (357)
T ss_dssp             G-HHHH-----SCCEEEEEECSCCH---HHHHHHHHH---EEEEEEEEECC
T ss_pred             H-HHHh-----CCCCCEEEECCCCh---HHHHHHHHH---HhcCCEEEEEe
Confidence            3 3332     13899998654422   346777788   99999988743

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.65  E-value=0.036  Score=48.85  Aligned_cols=54  Identities=15%  Similarity=0.135  Sum_probs=39.4

Q ss_pred             CcEEEE-EcchhhHHHHHHhCCCCCceeEEEEcCCccc--------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          171 HKVKIK-HGLAADSLKALILNGEASSYDFAFVDAEKRM--------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       171 ~~v~~~-~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~--------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ...+++ ++|+.+.+..+.    .++||+||+|++...              ....+..+.++   |+|||.+++.
T Consensus        37 ~~~~l~i~gD~l~~L~~l~----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rv---Lk~~G~i~i~  105 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLP----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERV---LSPTGSIAIF  105 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSC----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             ccceEEECCcHHHHHHhCc----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHH---cCCCeEEEEE
Confidence            346788 999998876553    468999999988432              22344555666   9999999885

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=94.58  E-value=0.091  Score=46.48  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=61.7

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ++++||-+|+|. |..+..+++..  ++ +|++++.+++..+.+++    .|..   .++..+..+....+........+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHHcCCCCC
Confidence            678999999853 66777788776  45 89999999887776653    3432   12221111222222111112479


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+||-....   ...++.+.++   |+++|.++.=
T Consensus       238 D~vid~~g~---~~~~~~~~~~---l~~~G~iv~~  266 (348)
T 2d8a_A          238 DVFLEFSGA---PKALEQGLQA---VTPAGRVSLL  266 (348)
T ss_dssp             EEEEECSCC---HHHHHHHHHH---EEEEEEEEEC
T ss_pred             CEEEECCCC---HHHHHHHHHH---HhcCCEEEEE
Confidence            999865543   2346677788   9999988864

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.55  E-value=0.1  Score=46.05  Aligned_cols=97  Identities=15%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-+|+  |.|..+..+++..  +++|+++ .+++.++.+++    .|... +. ...+..+.+....   ..
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~---~~  214 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT---AG  214 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH---TT
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh---cC
Confidence            4457889999994  4577788888876  4799999 88877666544    45432 22 1122222222221   13


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+|+||-....    ..++.+.++   |+++|.++.-
T Consensus       215 ~g~D~vid~~g~----~~~~~~~~~---l~~~G~iv~~  245 (343)
T 3gaz_A          215 QGFDLVYDTLGG----PVLDASFSA---VKRFGHVVSC  245 (343)
T ss_dssp             SCEEEEEESSCT----HHHHHHHHH---EEEEEEEEES
T ss_pred             CCceEEEECCCc----HHHHHHHHH---HhcCCeEEEE
Confidence            579998865552    356777788   9999998873

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.49  E-value=0.074  Score=47.25  Aligned_cols=101  Identities=11%  Similarity=0.107  Sum_probs=62.9

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...++++||-+|+  |.|..+..++...  +++|++++.+++.++.+++    .|..  . ++..+..+....+......
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~~--~-~~~~~~~~~~~~~~~~~~~  229 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGAA--A-GFNYKKEDFSEATLKFTKG  229 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCS--E-EEETTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCc--E-EEecCChHHHHHHHHHhcC
Confidence            3456789999984  4566677777765  4799999999888777643    2432  1 2222112222222211112


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|++|......    .++...++   |++||.++.=.
T Consensus       230 ~~~d~vi~~~G~~----~~~~~~~~---l~~~G~iv~~G  261 (354)
T 2j8z_A          230 AGVNLILDCIGGS----YWEKNVNC---LALDGRWVLYG  261 (354)
T ss_dssp             SCEEEEEESSCGG----GHHHHHHH---EEEEEEEEECC
T ss_pred             CCceEEEECCCch----HHHHHHHh---ccCCCEEEEEe
Confidence            4799998776643    35566777   99999988743

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.33  E-value=0.038  Score=48.07  Aligned_cols=53  Identities=19%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc----------------c-------HHHHHHHHHhhcCCCCCcEE
Q 023411          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM----------------Y-------QEYFELLLQLLLQIRVGGII  228 (282)
Q Consensus       172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~----------------~-------~~~l~~~~~~~~~LkpgG~l  228 (282)
                      ++++++||..+.++.+.    +++||+||+|++...                +       ...+..+.++   |+|||.+
T Consensus        21 ~~~i~~gD~~~~l~~l~----~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rv---Lk~~G~l   93 (297)
T 2zig_A           21 VHRLHVGDAREVLASFP----EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRL---LVPGGRL   93 (297)
T ss_dssp             CEEEEESCHHHHHTTSC----TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHH---EEEEEEE
T ss_pred             CCEEEECcHHHHHhhCC----CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHH---cCCCcEE
Confidence            58999999998765442    479999999987421                1       1234455566   9999988


Q ss_pred             EEe
Q 023411          229 VID  231 (282)
Q Consensus       229 v~d  231 (282)
                      ++.
T Consensus        94 ~i~   96 (297)
T 2zig_A           94 VIV   96 (297)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.31  E-value=0.13  Score=45.41  Aligned_cols=95  Identities=18%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             CCCEEEEEc-cc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG-~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ++++||-+| +| .|..+..+++..  +++|++++.+++.++.+++    .|... +--...+..+.+...   . ...+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~---~-~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADI-VLNHKESLLNQFKTQ---G-IELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSE-EECTTSCHHHHHHHH---T-CCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE-EEECCccHHHHHHHh---C-CCCc
Confidence            678999884 44 477777788876  4799999999988777765    34331 110011222222222   1 4689


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |+||-....   ...++.+.++   |+++|.++.
T Consensus       219 Dvv~d~~g~---~~~~~~~~~~---l~~~G~iv~  246 (346)
T 3fbg_A          219 DYVFCTFNT---DMYYDDMIQL---VKPRGHIAT  246 (346)
T ss_dssp             EEEEESSCH---HHHHHHHHHH---EEEEEEEEE
T ss_pred             cEEEECCCc---hHHHHHHHHH---hccCCEEEE
Confidence            999865442   2346777788   999999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.13  E-value=0.27  Score=43.88  Aligned_cols=98  Identities=15%  Similarity=0.145  Sum_probs=61.5

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .++++||-+|+  +.|..+..+++..  +++|+++. +++..+.+++    .|...-+.....+..+.+..+.    .+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t----~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT----KNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT----TTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc----cCC
Confidence            56789999998  3788888899886  47898885 7877766543    4543212211222222222221    345


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCC-CCCcEEEEeC
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQI-RVGGIIVIDN  232 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~L-kpgG~lv~dd  232 (282)
                      +|+||-.....   ..++.+.+.   | ++||.++.=.
T Consensus       232 ~d~v~d~~g~~---~~~~~~~~~---l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCITNV---ESTTFCFAA---IGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSCSH---HHHHHHHHH---SCTTCEEEEESS
T ss_pred             ccEEEECCCch---HHHHHHHHH---hhcCCCEEEEEe
Confidence            99998654432   346667777   8 6999988743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.92  E-value=0.2  Score=38.11  Aligned_cols=93  Identities=14%  Similarity=0.088  Sum_probs=56.8

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCcee
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~fD  197 (282)
                      .+|+=+|+  |.++..+++.+. .+..|+++|.+++.++.+++    .|    +.++.+|..+.  +...   + -..+|
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a---~-i~~ad   73 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA---H-LECAK   73 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT---T-GGGCS
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc---C-cccCC
Confidence            46887887  556655555542 24689999999987766543    22    67888988653  2221   1 35789


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|++...........-...+.   +.|+..+++
T Consensus        74 ~vi~~~~~~~~n~~~~~~a~~---~~~~~~iia  103 (140)
T 3fwz_A           74 WLILTIPNGYEAGEIVASARA---KNPDIEIIA  103 (140)
T ss_dssp             EEEECCSCHHHHHHHHHHHHH---HCSSSEEEE
T ss_pred             EEEEECCChHHHHHHHHHHHH---HCCCCeEEE
Confidence            988765543322222223333   677777665

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.80  E-value=0.2  Score=45.88  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch------------
Q 023411          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA------------  180 (282)
Q Consensus       115 ~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~------------  180 (282)
                      +...++++||-+|+  |.|..+..+++..  ++++++++.+++.++.+++    .|...-+.....+.            
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~  289 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVV  289 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccc
Confidence            34567889999986  3577777888876  4799999998887776643    45443121111111            


Q ss_pred             ------hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          181 ------ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       181 ------~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                            .+.+....    ...+|+||-....    ..++...++   |++||.++.=.
T Consensus       290 ~~~~~~~~~v~~~~----g~g~Dvvid~~G~----~~~~~~~~~---l~~~G~iv~~G  336 (447)
T 4a0s_A          290 ETGRKLAKLVVEKA----GREPDIVFEHTGR----VTFGLSVIV---ARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHH----SSCCSEEEECSCH----HHHHHHHHH---SCTTCEEEESC
T ss_pred             hhhhHHHHHHHHHh----CCCceEEEECCCc----hHHHHHHHH---HhcCCEEEEEe
Confidence                  11111211    3579999876553    246777788   99999988743

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.63  E-value=0.22  Score=43.75  Aligned_cols=56  Identities=7%  Similarity=0.096  Sum_probs=42.3

Q ss_pred             HHHHHHh--hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCc---cHHHHHHHHHHHhC
Q 023411          110 LLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA---RSLEVAKKYYERAG  168 (282)
Q Consensus       110 ll~~l~~--~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~---~~~~~a~~~~~~~g  168 (282)
                      ++..++.  ..++..|||--||+|..+......   +-+.+++|+++   +.++.+++++...+
T Consensus       231 l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          231 VIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            4444443  357789999999999988877765   35899999999   99999999988766

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=93.48  E-value=0.14  Score=47.19  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch-------------
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-------------  180 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-------------  180 (282)
                      ...++++||-+|+  |.|..++.+++..  ++++++++.+++.++.+++    .|...-+.....|.             
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHH
Confidence            4467889999997  4577788888876  4799999988887777654    35432111111111             


Q ss_pred             ----hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          181 ----ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       181 ----~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                          .+.+..+.   ....+|+||-....    ..++...++   |++||.++.=.
T Consensus       299 ~~~~~~~i~~~t---~g~g~Dvvid~~G~----~~~~~~~~~---l~~~G~iv~~G  344 (456)
T 3krt_A          299 WKRFGKRIRELT---GGEDIDIVFEHPGR----ETFGASVFV---TRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHH---TSCCEEEEEECSCH----HHHHHHHHH---EEEEEEEEESC
T ss_pred             HHHHHHHHHHHh---CCCCCcEEEEcCCc----hhHHHHHHH---hhCCcEEEEEe
Confidence                01222221   13589998865443    356777788   99999998743

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.47  E-value=0.093  Score=46.20  Aligned_cols=61  Identities=7%  Similarity=-0.036  Sum_probs=46.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ..++..|||-.||+|..+......   +-+.+++|+++...+.++++++..+..  ...++.|+.+
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~  310 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNR  310 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHH
Confidence            357789999999999987776653   468999999999999999998866643  3444444443

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.45  E-value=0.065  Score=47.35  Aligned_cols=93  Identities=11%  Similarity=0.136  Sum_probs=60.2

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc---chhhHHHHHHhCCCC
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILNGEA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g---d~~~~l~~l~~~~~~  193 (282)
                      ++++||-+|+|. |..+..+++..  ++ +|++++.+++..+.+++. .     +  .++..   +..+.+..+.    .
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~----~  229 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT----G  229 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH----S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc----C
Confidence            678999999853 66777788776  46 899999998877666542 1     1  12221   2222222221    2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+|+||-....   ...++...++   |+++|.++.=
T Consensus       230 ~g~D~vid~~g~---~~~~~~~~~~---l~~~G~iv~~  261 (343)
T 2dq4_A          230 SGVEVLLEFSGN---EAAIHQGLMA---LIPGGEARIL  261 (343)
T ss_dssp             SCEEEEEECSCC---HHHHHHHHHH---EEEEEEEEEC
T ss_pred             CCCCEEEECCCC---HHHHHHHHHH---HhcCCEEEEE
Confidence            579999865543   2346677788   9999988864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.11  E-value=0.33  Score=43.25  Aligned_cols=94  Identities=15%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++++||-+|+|. |..+..+++..  +++|++++.+++..+.+++   ..|..   .++..+-.+.+..+     .+.+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~-----~~~~D  253 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAA-----AGTLD  253 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHT-----TTCEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHh-----hCCCC
Confidence            678999999753 55667777765  4799999999887766543   23432   22222212223332     25799


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +||........   ++...++   |+++|.++.=
T Consensus       254 ~vid~~g~~~~---~~~~~~~---l~~~G~iv~~  281 (366)
T 1yqd_A          254 GIIDTVSAVHP---LLPLFGL---LKSHGKLILV  281 (366)
T ss_dssp             EEEECCSSCCC---SHHHHHH---EEEEEEEEEC
T ss_pred             EEEECCCcHHH---HHHHHHH---HhcCCEEEEE
Confidence            99876553321   3455677   8999988763

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.11  E-value=0.23  Score=46.27  Aligned_cols=59  Identities=15%  Similarity=0.099  Sum_probs=42.9

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (282)
                      .-+++|+-||.|++++-+..+   +. .|.++|+++.+.+.-+.|+.   ......++++|+.+..
T Consensus        88 ~~~viDLFaG~GGlslG~~~a---G~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI---GGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDIT  147 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT---TEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhh
Confidence            358999999999999888764   33 48999999987776666552   1122456778887654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=92.90  E-value=0.084  Score=46.20  Aligned_cols=96  Identities=15%  Similarity=0.209  Sum_probs=59.0

Q ss_pred             cCCC-EEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch-hhHHHHHHhCCCC
Q 023411          118 LGAQ-RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEA  193 (282)
Q Consensus       118 ~~~~-~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~l~~~~~~  193 (282)
                      .+++ +||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|... + +-..+. .+....+    ..
T Consensus       147 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~~~~----~~  214 (328)
T 1xa0_A          147 TPERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKE-V-LAREDVMAERIRPL----DK  214 (328)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSE-E-EECC---------C----CS
T ss_pred             CCCCceEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCcE-E-EecCCcHHHHHHHh----cC
Confidence            3443 7999997  5677788888876  4789999999888777654    45432 1 111111 1111111    13


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +.+|+||-.....    .++...++   ++++|.++.=.
T Consensus       215 ~~~d~vid~~g~~----~~~~~~~~---l~~~G~~v~~G  246 (328)
T 1xa0_A          215 QRWAAAVDPVGGR----TLATVLSR---MRYGGAVAVSG  246 (328)
T ss_dssp             CCEEEEEECSTTT----THHHHHHT---EEEEEEEEECS
T ss_pred             CcccEEEECCcHH----HHHHHHHh---hccCCEEEEEe
Confidence            5799988655432    35667777   99999988743

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=92.55  E-value=0.49  Score=41.85  Aligned_cols=107  Identities=12%  Similarity=0.119  Sum_probs=59.6

Q ss_pred             hhcCC-CEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE---cchhhHHHHHHh
Q 023411          116 QILGA-QRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---GLAADSLKALIL  189 (282)
Q Consensus       116 ~~~~~-~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~---gd~~~~l~~l~~  189 (282)
                      ...++ ++||-+|+  +.|..++.+++..  +++++++..+++.++..++.++..|.+.-+....   .+..+.+..+..
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhh
Confidence            34567 89999886  4677788888876  4788888766554222223344556542111110   122222222210


Q ss_pred             CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ++ ...+|+||-.....   ... ...++   |+++|.++.=.
T Consensus       241 ~~-~~g~Dvvid~~G~~---~~~-~~~~~---l~~~G~~v~~g  275 (364)
T 1gu7_A          241 QS-GGEAKLALNCVGGK---SST-GIARK---LNNNGLMLTYG  275 (364)
T ss_dssp             HH-TCCEEEEEESSCHH---HHH-HHHHT---SCTTCEEEECC
T ss_pred             cc-CCCceEEEECCCch---hHH-HHHHH---hccCCEEEEec
Confidence            00 35799998655432   122 45577   99999988743

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.51  E-value=1.3  Score=32.77  Aligned_cols=95  Identities=18%  Similarity=0.123  Sum_probs=53.8

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      .+|+=+|+  |..+..++..+. .+.+|+.+|.+++..+..++.   .+    +.++.+|..+. ..+.... ...+|+|
T Consensus         5 m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~-~~l~~~~-~~~~d~v   73 (140)
T 1lss_A            5 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKI-KTLEDAG-IEDADMY   73 (140)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSH-HHHHHTT-TTTCSEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCH-HHHHHcC-cccCCEE
Confidence            47888876  666666666542 246899999988765543321   12    45677776432 1111111 2578999


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      ++..........+..+.+.   +.++-+++
T Consensus        74 i~~~~~~~~~~~~~~~~~~---~~~~~ii~  100 (140)
T 1lss_A           74 IAVTGKEEVNLMSSLLAKS---YGINKTIA  100 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHH---TTCCCEEE
T ss_pred             EEeeCCchHHHHHHHHHHH---cCCCEEEE
Confidence            9876543333333344444   67764443

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=92.34  E-value=0.32  Score=43.10  Aligned_cols=98  Identities=17%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             hhc-CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QIL-GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~-~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ... ++++||-+|+| .|..+..+++..  +++|++++.+++..+.+++   ..|.+.   ++..+-.+.+..+     .
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~~~~~-----~  242 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGADD---YVIGSDQAKMSEL-----A  242 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHHHHHS-----T
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCce---eeccccHHHHHHh-----c
Confidence            344 77899999976 356667777765  4799999999887666542   344432   2221112222222     2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +.+|+||-.......   ++...++   |+++|.++.=.
T Consensus       243 ~g~D~vid~~g~~~~---~~~~~~~---l~~~G~iv~~G  275 (357)
T 2cf5_A          243 DSLDYVIDTVPVHHA---LEPYLSL---LKLDGKLILMG  275 (357)
T ss_dssp             TTEEEEEECCCSCCC---SHHHHTT---EEEEEEEEECS
T ss_pred             CCCCEEEECCCChHH---HHHHHHH---hccCCEEEEeC
Confidence            579999865543321   3445567   99999988743

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.27  E-value=0.59  Score=41.94  Aligned_cols=94  Identities=12%  Similarity=0.088  Sum_probs=62.2

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +.+||.|+.+.|..+++++..     .++.+.-|--....++.|+..+++.+ .+++...  .+.   .     ...||+
T Consensus        39 ~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~---~-----~~~~~~  103 (375)
T 4dcm_A           39 RGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TAD---Y-----PQQPGV  103 (375)
T ss_dssp             CSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSC---C-----CSSCSE
T ss_pred             CCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccc---c-----ccCCCE
Confidence            347999999999999988753     23555333334456678899998875 3666532  221   1     578999


Q ss_pred             EEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDAEKR--MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |++.-++.  .....+..+...   |++|+.|++-
T Consensus       104 v~~~lpk~~~~l~~~L~~l~~~---l~~~~~i~~~  135 (375)
T 4dcm_A          104 VLIKVPKTLALLEQQLRALRKV---VTSDTRIIAG  135 (375)
T ss_dssp             EEEECCSCHHHHHHHHHHHHTT---CCTTSEEEEE
T ss_pred             EEEEcCCCHHHHHHHHHHHHhh---CCCCCEEEEE
Confidence            99876643  233345555555   9999988764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.21  E-value=1.4  Score=31.36  Aligned_cols=74  Identities=23%  Similarity=0.175  Sum_probs=47.5

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC-CC-CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCc
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP-ES-GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~-~~-~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~  195 (282)
                      .++|+-+|+  |..+..++..+. .+ .+|+.+|.+++..+...        ...+.++.+|..+.  +...     -..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~-----~~~   69 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--------RMGVATKQVDAKDEAGLAKA-----LGG   69 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--------TTTCEEEECCTTCHHHHHHH-----TTT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--------hCCCcEEEecCCCHHHHHHH-----HcC
Confidence            357888998  666666665542 23 58999999987655443        12366777777542  2333     257


Q ss_pred             eeEEEEcCCcccc
Q 023411          196 YDFAFVDAEKRMY  208 (282)
Q Consensus       196 fDlV~id~~~~~~  208 (282)
                      +|+||...+....
T Consensus        70 ~d~vi~~~~~~~~   82 (118)
T 3ic5_A           70 FDAVISAAPFFLT   82 (118)
T ss_dssp             CSEEEECSCGGGH
T ss_pred             CCEEEECCCchhh
Confidence            8999987764443

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=91.88  E-value=0.27  Score=45.00  Aligned_cols=49  Identities=16%  Similarity=0.166  Sum_probs=39.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC----CCCEEEEEecCccHHHHHHHHHHH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYER  166 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~  166 (282)
                      ..+-.|+|+|.|+|....-+++.+.    ...+++.||+|+...+.-++.+..
T Consensus       136 ~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          136 SGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             cCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            3467999999999999888776542    124899999999998888888765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.80  E-value=0.66  Score=34.86  Aligned_cols=72  Identities=10%  Similarity=0.119  Sum_probs=46.7

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      ++|+=+|+  |.++..+++.+. .+.+|+++|.+++.++.+++    .+    +.++.+|..+.. .+..-+ ...+|.|
T Consensus         7 ~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~-~l~~~~-~~~~d~v   74 (141)
T 3llv_A            7 YEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDES-FYRSLD-LEGVSAV   74 (141)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHH-HHHHSC-CTTCSEE
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHH-HHHhCC-cccCCEE
Confidence            47888887  556666666553 24689999999987665543    22    678888886531 111111 3578999


Q ss_pred             EEcCC
Q 023411          200 FVDAE  204 (282)
Q Consensus       200 ~id~~  204 (282)
                      ++..+
T Consensus        75 i~~~~   79 (141)
T 3llv_A           75 LITGS   79 (141)
T ss_dssp             EECCS
T ss_pred             EEecC
Confidence            88655

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=91.74  E-value=0.14  Score=44.50  Aligned_cols=89  Identities=13%  Similarity=0.090  Sum_probs=57.3

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++++||-+|+| .|..+..+++..  +++|++++ +++..+.+++    .|.+   .++ .| .   ..+     ..
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d-~---~~v-----~~  198 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAK----RGVR---HLY-RE-P---SQV-----TQ  198 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH----HTEE---EEE-SS-G---GGC-----CS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH----cCCC---EEE-cC-H---HHh-----CC
Confidence            34578899999996 377788888876  47999999 9988887765    3432   222 23 1   122     36


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+|+||-......    +..+.++   |+++|.++.=
T Consensus       199 g~Dvv~d~~g~~~----~~~~~~~---l~~~G~~v~~  228 (315)
T 3goh_A          199 KYFAIFDAVNSQN----AAALVPS---LKANGHIICI  228 (315)
T ss_dssp             CEEEEECC-----------TTGGG---EEEEEEEEEE
T ss_pred             CccEEEECCCchh----HHHHHHH---hcCCCEEEEE
Confidence            8999884433221    2345566   9999988764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=91.67  E-value=0.14  Score=44.70  Aligned_cols=91  Identities=14%  Similarity=0.090  Sum_probs=59.7

Q ss_pred             EEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          122 RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       122 ~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +||-+|+  +.|..+..+++..  +++|++++.+++..+.+++    .|.+.   ++.....+.   . .....+.+|+|
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~---~-~~~~~~~~d~v  215 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGANR---ILSRDEFAE---S-RPLEKQLWAGA  215 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCSE---EEEGGGSSC---C-CSSCCCCEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCE---EEecCCHHH---H-HhhcCCCccEE
Confidence            4998886  4688888899886  4799999999998887765    35332   221111111   1 11113679988


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |-....    ..++.+.++   |+++|.++.=.
T Consensus       216 ~d~~g~----~~~~~~~~~---l~~~G~iv~~G  241 (324)
T 3nx4_A          216 IDTVGD----KVLAKVLAQ---MNYGGCVAACG  241 (324)
T ss_dssp             EESSCH----HHHHHHHHT---EEEEEEEEECC
T ss_pred             EECCCc----HHHHHHHHH---HhcCCEEEEEe
Confidence            754432    257777788   99999988743

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=91.61  E-value=0.17  Score=44.71  Aligned_cols=99  Identities=12%  Similarity=0.103  Sum_probs=55.8

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ....++++||-+|+  +.|..+..+++... ..+|++++ +++..+.++     .|...-+. ...+..+.+..+   . 
T Consensus       138 ~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~---~-  205 (349)
T 4a27_A          138 ANLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRI---S-  205 (349)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHH---C-
T ss_pred             cCCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHh---c-
Confidence            34567889999998  34667777777654 46899988 555444433     34432111 112222222222   1 


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+.+|+||-......    ++.+.++   |+++|.+++-.
T Consensus       206 ~~g~Dvv~d~~g~~~----~~~~~~~---l~~~G~~v~~G  238 (349)
T 4a27_A          206 AEGVDIVLDCLCGDN----TGKGLSL---LKPLGTYILYG  238 (349)
T ss_dssp             TTCEEEEEEECC-----------CTT---EEEEEEEEEEC
T ss_pred             CCCceEEEECCCchh----HHHHHHH---hhcCCEEEEEC
Confidence            468999986554332    2455566   99999988643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.48  E-value=0.6  Score=41.57  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=55.5

Q ss_pred             CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++++|+=+|+| .|..+..++...  +++|+.+|.+++.++.+++....     .+..+..+..+....+      ..+|
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~D  232 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV------AEAD  232 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH------HTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH------cCCC
Confidence            45899999985 233445555555  36999999999888777665431     2333322322222222      3689


Q ss_pred             EEEEcCCcccc--HH-HHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRMY--QE-YFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~~--~~-~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +|+........  +. ..+...+.   +++||+++-
T Consensus       233 vVI~~~~~~~~~~~~li~~~~~~~---~~~g~~ivd  265 (361)
T 1pjc_A          233 LLIGAVLVPGRRAPILVPASLVEQ---MRTGSVIVD  265 (361)
T ss_dssp             EEEECCCCTTSSCCCCBCHHHHTT---SCTTCEEEE
T ss_pred             EEEECCCcCCCCCCeecCHHHHhh---CCCCCEEEE
Confidence            99865432210  00 12334456   899987664

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=91.12  E-value=0.42  Score=42.44  Aligned_cols=94  Identities=12%  Similarity=0.111  Sum_probs=57.9

Q ss_pred             CCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCc---cHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          120 AQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       120 ~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~---~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      +++||-+|+|. |..+..+++..  +++|++++.++   +..+.+++    .|.. .+.  ..+..+.+...     .+.
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~--~~~~~~~~~~~-----~~~  246 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YYN--SSNGYDKLKDS-----VGK  246 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE--CTTCSHHHHHH-----HCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-eec--hHHHHHHHHHh-----CCC
Confidence            78999999842 45556666655  46999999988   66665543    3432 121  11222222221     257


Q ss_pred             eeEEEEcCCccccHHHH-HHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAEKRMYQEYF-ELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l-~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|+||.......   .+ +.+.++   |+++|.++.=..
T Consensus       247 ~d~vid~~g~~~---~~~~~~~~~---l~~~G~iv~~g~  279 (366)
T 2cdc_A          247 FDVIIDATGADV---NILGNVIPL---LGRNGVLGLFGF  279 (366)
T ss_dssp             EEEEEECCCCCT---HHHHHHGGG---EEEEEEEEECSC
T ss_pred             CCEEEECCCChH---HHHHHHHHH---HhcCCEEEEEec
Confidence            999987655332   24 666777   999999887443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.98  E-value=2.2  Score=34.95  Aligned_cols=96  Identities=18%  Similarity=0.112  Sum_probs=59.1

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      ..+|+=+|+  |..+..+++.+...+.|+.+|.+++.++.++     .    .+.++.+|+.+. ..+...+ -...|.|
T Consensus         9 ~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~-~~l~~a~-i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----S----GANFVHGDPTRV-SDLEKAN-VRGARAV   75 (234)
T ss_dssp             -CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----T----TCEEEESCTTCH-HHHHHTT-CTTCSEE
T ss_pred             CCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----c----CCeEEEcCCCCH-HHHHhcC-cchhcEE
Confidence            457888876  7888888888864334999999988665433     1    278899998653 1221111 3678998


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++...............+-   +.|+..+++.
T Consensus        76 i~~~~~d~~n~~~~~~a~~---~~~~~~iia~  104 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRK---IDESVRIIAE  104 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHH---HCSSSEEEEE
T ss_pred             EEcCCCcHHHHHHHHHHHH---HCCCCeEEEE
Confidence            8865543322223333333   6777666664

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.83  E-value=0.6  Score=41.90  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=55.1

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++++|+=+|+|. |.....++..+  +.+|+++|.+++.++.+++.+   |..  +.....+..+ +....     ...
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~~--~~~~~~~~~~-l~~~l-----~~a  232 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CGR--IHTRYSSAYE-LEGAV-----KRA  232 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TTS--SEEEECCHHH-HHHHH-----HHC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CCe--eEeccCCHHH-HHHHH-----cCC
Confidence            4678999999852 33344455554  469999999998776665433   322  2222222222 22221     467


Q ss_pred             eEEEEcCCccc--cHH-HHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRM--YQE-YFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~--~~~-~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+|+.......  ... ..+...+.   ++|||+++-=
T Consensus       233 DvVi~~~~~p~~~t~~li~~~~l~~---mk~g~~iV~v  267 (377)
T 2vhw_A          233 DLVIGAVLVPGAKAPKLVSNSLVAH---MKPGAVLVDI  267 (377)
T ss_dssp             SEEEECCCCTTSCCCCCBCHHHHTT---SCTTCEEEEG
T ss_pred             CEEEECCCcCCCCCcceecHHHHhc---CCCCcEEEEE
Confidence            99987433111  111 12345556   8999987653

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=90.61  E-value=0.66  Score=40.81  Aligned_cols=97  Identities=10%  Similarity=0.041  Sum_probs=56.8

Q ss_pred             CEEEEE-ccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          121 QRCIEV-GVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       121 ~~VLEI-G~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++||=. |+| .|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+.....   ...+|+
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~---~~g~D~  236 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK---AEQPRI  236 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH---HHCCCE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc---CCCCcE
Confidence            566643 332 455666677765  4799999999998877764    34331111111222222222210   247999


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ||-.....    .++.+.++   |+++|.++.=..
T Consensus       237 vid~~g~~----~~~~~~~~---l~~~G~iv~~G~  264 (349)
T 3pi7_A          237 FLDAVTGP----LASAIFNA---MPKRARWIIYGR  264 (349)
T ss_dssp             EEESSCHH----HHHHHHHH---SCTTCEEEECCC
T ss_pred             EEECCCCh----hHHHHHhh---hcCCCEEEEEec
Confidence            98655532    24567777   999999987443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.51  E-value=1.4  Score=34.56  Aligned_cols=97  Identities=13%  Similarity=0.076  Sum_probs=54.9

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC-C-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP-E-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~-~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ..+|+=+|+  |..+..+++.+. . +.+|+++|.+++..+.+++    .|    +.++.+|..+. ..+..-.....+|
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~-~~l~~~~~~~~ad  107 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDP-DFWERILDTGHVK  107 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCH-HHHHTBCSCCCCC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCH-HHHHhccCCCCCC
Confidence            447888886  566666665543 2 4579999999877655432    23    45677776542 1121110135789


Q ss_pred             EEEEcCCccc-cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRM-YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~-~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++...... .......+. .   +.|++.+++.
T Consensus       108 ~vi~~~~~~~~~~~~~~~~~-~---~~~~~~ii~~  138 (183)
T 3c85_A          108 LVLLAMPHHQGNQTALEQLQ-R---RNYKGQIAAI  138 (183)
T ss_dssp             EEEECCSSHHHHHHHHHHHH-H---TTCCSEEEEE
T ss_pred             EEEEeCCChHHHHHHHHHHH-H---HCCCCEEEEE
Confidence            9988554322 222233333 3   5677777763

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=90.44  E-value=3.4  Score=34.49  Aligned_cols=83  Identities=14%  Similarity=0.132  Sum_probs=53.9

Q ss_pred             CCCEEEEEccccc-HHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--H----HHHHhC
Q 023411          119 GAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILN  190 (282)
Q Consensus       119 ~~~~VLEIG~G~G-~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~l~~~  190 (282)
                      .++++|-.|++++ .++..+++.+ ..+++|+.++.+++.++.+.+.++..+-. ++.++++|..+.  .    ......
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQP-EAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCS-SCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5778898886431 2444444433 13689999999999888888877765533 578888887542  1    111111


Q ss_pred             CCCCceeEEEEcCC
Q 023411          191 GEASSYDFAFVDAE  204 (282)
Q Consensus       191 ~~~~~fDlV~id~~  204 (282)
                        -++.|.++.++.
T Consensus        84 --~G~iD~lvnnAg   95 (256)
T 4fs3_A           84 --VGNIDGVYHSIA   95 (256)
T ss_dssp             --HCCCSEEEECCC
T ss_pred             --hCCCCEEEeccc
Confidence              378999987643

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=90.31  E-value=4.1  Score=34.68  Aligned_cols=84  Identities=18%  Similarity=0.118  Sum_probs=51.6

Q ss_pred             cCCCEEEEEccccc-HHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--
Q 023411          118 LGAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (282)
Q Consensus       118 ~~~~~VLEIG~G~G-~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--  191 (282)
                      ..++++|-.|++.| .++..+++.+ ..+.+|+.++.++...+.+++..+..+   ++.++.+|..+.  ...+.+.-  
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence            45678998887633 2444444443 235799999998766565555555443   488899987653  22221100  


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                      ..+.+|+++..+.
T Consensus       106 ~~g~iD~lVnnAG  118 (293)
T 3grk_A          106 KWGKLDFLVHAIG  118 (293)
T ss_dssp             HTSCCSEEEECCC
T ss_pred             hcCCCCEEEECCc
Confidence            0258999998765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.11  E-value=1.3  Score=39.57  Aligned_cols=99  Identities=16%  Similarity=0.181  Sum_probs=54.5

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++++|+-+|+| .|.....++...  +.+|+++|.+++.++.+++.+   +.  .+.....+..+ +....     ..+
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~-l~~~~-----~~~  230 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEAN-IKKSV-----QHA  230 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHH-HHHHH-----HHC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHH-HHHHH-----hCC
Confidence            356899999984 233333344444  479999999988766554422   32  23333223322 22321     468


Q ss_pred             eEEEEcCCccc--cHH-HHHHHHHhhcCCCCCcEEEEeC
Q 023411          197 DFAFVDAEKRM--YQE-YFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       197 DlV~id~~~~~--~~~-~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |+|+.......  ... ..+...+.   +++||+++.-.
T Consensus       231 DvVi~~~g~~~~~~~~li~~~~l~~---mk~gg~iV~v~  266 (369)
T 2eez_A          231 DLLIGAVLVPGAKAPKLVTRDMLSL---MKEGAVIVDVA  266 (369)
T ss_dssp             SEEEECCC-------CCSCHHHHTT---SCTTCEEEECC
T ss_pred             CEEEECCCCCccccchhHHHHHHHh---hcCCCEEEEEe
Confidence            99987655321  111 13445566   89999876543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=89.98  E-value=2.2  Score=32.45  Aligned_cols=96  Identities=13%  Similarity=0.119  Sum_probs=56.7

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCc-cHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCce
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY  196 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~-~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~f  196 (282)
                      ++|+=+|+  |..+..+++.+. .+.+|+.+|.++ +..+..++..     ...+.++.||..+.  +...   + -...
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a---~-i~~a   72 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA---G-IDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH---T-TTTC
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc---C-hhhC
Confidence            46777775  777777776653 246899999974 4443333322     12378899998653  2222   1 3678


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |.|++...............+.   +.|...+++
T Consensus        73 d~vi~~~~~d~~n~~~~~~a~~---~~~~~~ii~  103 (153)
T 1id1_A           73 RAILALSDNDADNAFVVLSAKD---MSSDVKTVL  103 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHH---HTSSSCEEE
T ss_pred             CEEEEecCChHHHHHHHHHHHH---HCCCCEEEE
Confidence            9998875544333333333344   566666665

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.54  E-value=3.6  Score=35.10  Aligned_cols=83  Identities=13%  Similarity=0.057  Sum_probs=52.2

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .++++|-.|++. ..++..+++.+ ..+.+|+.++.+++..+.+++..+..+   ++.++.+|..+.  ...+.+.-  .
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467899888753 24555555544 236799999999877766666665544   367888887652  12221100  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+.+|+++..+.
T Consensus       106 ~g~iD~lVnnAG  117 (296)
T 3k31_A          106 WGSLDFVVHAVA  117 (296)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899998764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=89.45  E-value=1.6  Score=33.39  Aligned_cols=99  Identities=12%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .+..+|+=+|+  |..+..+++.+. .+.+|+.+|.+++.++.+++   .    ..+.++.+|..+. ..+...+ ...+
T Consensus        17 ~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~-~~l~~~~-~~~a   85 (155)
T 2g1u_A           17 QKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEF-ETLKECG-MEKA   85 (155)
T ss_dssp             CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSH-HHHHTTT-GGGC
T ss_pred             cCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCH-HHHHHcC-cccC
Confidence            35678999987  566665555442 24689999999876543221   1    1245667776432 2221111 2578


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |+||+.............+.+.   +.+...++.
T Consensus        86 d~Vi~~~~~~~~~~~~~~~~~~---~~~~~~iv~  116 (155)
T 2g1u_A           86 DMVFAFTNDDSTNFFISMNARY---MFNVENVIA  116 (155)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHH---TSCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH---HCCCCeEEE
Confidence            9999876543333333333333   455555555

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=89.19  E-value=1.6  Score=42.96  Aligned_cols=59  Identities=10%  Similarity=-0.001  Sum_probs=40.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCC---C-CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPE---S-GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~---~-~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      +..+|||+-||.|+++.-+.++...   . -.+.++|+++.+++.-+.|+.      ...++++|..+.
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp------~~~~~~~di~~i  273 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP------QTEVRNEKADEF  273 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT------TSEEEESCHHHH
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC------CCceecCcHHHh
Confidence            3458999999999998887765210   0 147899999988877666642      245566666544

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.17  E-value=1.2  Score=36.19  Aligned_cols=93  Identities=17%  Similarity=0.108  Sum_probs=57.0

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCceeE
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~fDl  198 (282)
                      +|+=+|+  |..+..+++.+. .+..|+.+|.+++.++...+.   .    .+.++.+|+.+.  +...   + -...|+
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a---~-i~~ad~   68 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDA---E-VSKNDV   68 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHH---T-CCTTCE
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhc---C-cccCCE
Confidence            4666675  777777776653 246899999999876544322   1    267899998753  2222   1 367899


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |++...............+.   +.+...+++
T Consensus        69 vi~~~~~d~~n~~~~~~a~~---~~~~~~iia   97 (218)
T 3l4b_C           69 VVILTPRDEVNLFIAQLVMK---DFGVKRVVS   97 (218)
T ss_dssp             EEECCSCHHHHHHHHHHHHH---TSCCCEEEE
T ss_pred             EEEecCCcHHHHHHHHHHHH---HcCCCeEEE
Confidence            98876544433334444443   556666655

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=89.13  E-value=0.73  Score=41.00  Aligned_cols=97  Identities=12%  Similarity=0.119  Sum_probs=58.2

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       117 ~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ..++++||-+|+  |.|..+..+++..  +++|++++ +++..+.++    ..|.+   .++..+..+....+..   ..
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~---~~  247 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKS---LK  247 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHT---SC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhh---cC
Confidence            457789999983  4577788888876  47999998 666665553    34543   2222221223233321   25


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+|+||-......  ..++...++   |++||.++.=
T Consensus       248 g~D~vid~~g~~~--~~~~~~~~~---l~~~G~iv~~  279 (375)
T 2vn8_A          248 PFDFILDNVGGST--ETWAPDFLK---KWSGATYVTL  279 (375)
T ss_dssp             CBSEEEESSCTTH--HHHGGGGBC---SSSCCEEEES
T ss_pred             CCCEEEECCCChh--hhhHHHHHh---hcCCcEEEEe
Confidence            7999986554321  123344455   9999998873

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=88.78  E-value=0.83  Score=41.00  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=31.5

Q ss_pred             CCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411          119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (282)
Q Consensus       119 ~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (282)
                      ++.+|+=+|+|. |..+..++..++  .+|+.+|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            678999999873 445566666664  689999999887766543

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=88.67  E-value=0.98  Score=39.17  Aligned_cols=97  Identities=11%  Similarity=0.034  Sum_probs=60.1

Q ss_pred             HHHhhcCCCEEEEEc-cc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          113 MLVQILGAQRCIEVG-VY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG-~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      ..+...++++||-+| +| .|..+..+++..  +++|++++ +++..+.+    +..|.+.   ++..+..+.....   
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~----~~lGa~~---~i~~~~~~~~~~~---  212 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFL----KALGAEQ---CINYHEEDFLLAI---  212 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHH----HHHTCSE---EEETTTSCHHHHC---
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHH----HHcCCCE---EEeCCCcchhhhh---
Confidence            344567888999986 44 577888888876  47999987 44444444    4456542   2322222212221   


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                        ...+|+||-.....    .++...++   |+++|.++.-
T Consensus       213 --~~g~D~v~d~~g~~----~~~~~~~~---l~~~G~iv~~  244 (321)
T 3tqh_A          213 --STPVDAVIDLVGGD----VGIQSIDC---LKETGCIVSV  244 (321)
T ss_dssp             --CSCEEEEEESSCHH----HHHHHGGG---EEEEEEEEEC
T ss_pred             --ccCCCEEEECCCcH----HHHHHHHh---ccCCCEEEEe
Confidence              25799998655432    23566677   9999998874

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=88.66  E-value=2  Score=37.49  Aligned_cols=96  Identities=17%  Similarity=0.093  Sum_probs=59.0

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      .++|+=+|+  |..+..+++.+...+.|+.+|.+++.++ +++        ..+.++.||+.+. ..+...+ -+..|.+
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~-~~L~~a~-i~~a~~v  181 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR--------SGANFVHGDPTRV-SDLEKAN-VRGARAV  181 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--------TTCEEEESCTTSH-HHHHHTC-STTEEEE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--------CCcEEEEeCCCCH-HHHHhcC-hhhccEE
Confidence            347887775  7888888887753344999999998776 442        1378999998753 2222222 4678998


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++....+...-..-...+-   +.|...+++.
T Consensus       182 i~~~~~d~~n~~~~~~ar~---~~~~~~iiar  210 (336)
T 1lnq_A          182 IVDLESDSETIHCILGIRK---IDESVRIIAE  210 (336)
T ss_dssp             EECCSSHHHHHHHHHHHHT---TCTTSEEEEE
T ss_pred             EEcCCccHHHHHHHHHHHH---HCCCCeEEEE
Confidence            8765533222222222233   6777666653

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.33  E-value=0.12  Score=45.26  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=59.5

Q ss_pred             cCCC-EEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQ-RCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~-~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      .+++ +||-+|+  |.|..+..+++..  +++|++++.+++..+.+++    .|...   ++  |..+...........+
T Consensus       148 ~~g~~~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~---v~--~~~~~~~~~~~~~~~~  216 (330)
T 1tt7_A          148 SPEKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGASE---VI--SREDVYDGTLKALSKQ  216 (330)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCSE---EE--EHHHHCSSCCCSSCCC
T ss_pred             CCCCceEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE---EE--ECCCchHHHHHHhhcC
Confidence            3443 7999996  4677778888776  4789999999888877754    34331   22  1111100000001134


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+|+||-....    ..++...++   +++||.++.=.
T Consensus       217 ~~d~vid~~g~----~~~~~~~~~---l~~~G~iv~~G  247 (330)
T 1tt7_A          217 QWQGAVDPVGG----KQLASLLSK---IQYGGSVAVSG  247 (330)
T ss_dssp             CEEEEEESCCT----HHHHHHHTT---EEEEEEEEECC
T ss_pred             CccEEEECCcH----HHHHHHHHh---hcCCCEEEEEe
Confidence            79998865543    246667777   99999988743

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.18  E-value=2.8  Score=36.25  Aligned_cols=85  Identities=12%  Similarity=0.012  Sum_probs=57.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .+++||-.|++ |+++..+++.+ ..+.+|+.++.+++.++.+.+.+...+...++.++.+|..+.  +..+...-  ..
T Consensus         7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            45688888865 55666666655 236799999999998888877777666544799999998653  11111100  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +.+|++|..+.
T Consensus        86 g~id~lv~nAg   96 (319)
T 3ioy_A           86 GPVSILCNNAG   96 (319)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            67899998765

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=88.01  E-value=0.95  Score=40.82  Aligned_cols=53  Identities=15%  Similarity=0.074  Sum_probs=38.5

Q ss_pred             CEEEEEcccccHHHHHHHHHCC------CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP------ESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~------~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~  176 (282)
                      -.|+|+|.|+|..+.-+++.+.      ...+++.||+|+...+.-++.+...   +++++.
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~  140 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH  140 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe
Confidence            3799999999999888876542      1358999999998877666655432   146554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=87.74  E-value=6.8  Score=31.29  Aligned_cols=70  Identities=16%  Similarity=0.061  Sum_probs=48.0

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +||=+| |+|..+..+++.+- .+.+|++++.+++..+.         . .+++++.+|..+....+...  -..+|.||
T Consensus         2 ~ilItG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---------~-~~~~~~~~D~~d~~~~~~~~--~~~~d~vi   68 (219)
T 3dqp_A            2 KIFIVG-STGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ---------Y-NNVKAVHFDVDWTPEEMAKQ--LHGMDAII   68 (219)
T ss_dssp             EEEEES-TTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC---------C-TTEEEEECCTTSCHHHHHTT--TTTCSEEE
T ss_pred             eEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCccchhh---------c-CCceEEEecccCCHHHHHHH--HcCCCEEE
Confidence            577677 47888888888774 34699999998764321         1 46999999987612222221  35789999


Q ss_pred             EcCC
Q 023411          201 VDAE  204 (282)
Q Consensus       201 id~~  204 (282)
                      ..+.
T Consensus        69 ~~ag   72 (219)
T 3dqp_A           69 NVSG   72 (219)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8765

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=87.51  E-value=0.96  Score=40.70  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=32.5

Q ss_pred             CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (282)
Q Consensus       119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (282)
                      ++.+|+=||+| .|..+..++..+  +++|+++|.+++.++.+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            67899999998 355566666666  4799999999988777654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=87.44  E-value=5.1  Score=34.69  Aligned_cols=89  Identities=11%  Similarity=0.005  Sum_probs=52.8

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-C-CEEEEEecCcc---HHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCCCC
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-S-GCLVACERDAR---SLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEAS  194 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~-~~v~~iD~s~~---~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~~~  194 (282)
                      .+|.=||+  |..+..++..+.. + .+|+++|.+++   ..+...+.+...|.       .. +..+.         -.
T Consensus        25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~---------~~   86 (317)
T 4ezb_A           25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAG---------IA   86 (317)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGG---------GG
T ss_pred             CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHH---------Hh
Confidence            47888886  5566666655432 4 58999999973   22222233333342       22 33332         14


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..|+||+..+.......++.+.+.   +++|.++|-
T Consensus        87 ~aDvVi~avp~~~~~~~~~~i~~~---l~~~~ivv~  119 (317)
T 4ezb_A           87 CADVVLSLVVGAATKAVAASAAPH---LSDEAVFID  119 (317)
T ss_dssp             GCSEEEECCCGGGHHHHHHHHGGG---CCTTCEEEE
T ss_pred             cCCEEEEecCCHHHHHHHHHHHhh---cCCCCEEEE
Confidence            569999887766555556666666   888766554

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=87.44  E-value=3.1  Score=35.46  Aligned_cols=82  Identities=26%  Similarity=0.207  Sum_probs=52.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--  191 (282)
                      ...++.+|--|.+.| ++..+++.+. .+++|+.+|.+++.++.+.+.+   +  .++..+.+|..+.  ...+.+.-  
T Consensus        26 rL~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~   99 (273)
T 4fgs_A           26 RLNAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKA   99 (273)
T ss_dssp             TTTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHH
Confidence            356788888887655 5666666552 3689999999988776554433   3  3577888887542  11111110  


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                      .-++.|+++.++.
T Consensus       100 ~~G~iDiLVNNAG  112 (273)
T 4fgs_A          100 EAGRIDVLFVNAG  112 (273)
T ss_dssp             HHSCEEEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1378999987754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=87.37  E-value=6.6  Score=32.55  Aligned_cols=85  Identities=9%  Similarity=-0.027  Sum_probs=51.7

Q ss_pred             CCCEEEEEccccc-HHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G-~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .++++|-.|++.| .++..+++.+ ..+.+|+.++.++...+.+++..+..+- .++.++.+|..+.  ...+.+.-  .
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4568888887522 2444444443 2367999999988777776666665442 2589999987652  12211100  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+.+|.++..+.
T Consensus        85 ~g~id~li~~Ag   96 (266)
T 3oig_A           85 VGVIHGIAHCIA   96 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCeeEEEEccc
Confidence            257899987654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.30  E-value=10  Score=30.59  Aligned_cols=72  Identities=17%  Similarity=0.102  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcE-EEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKV-KIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v-~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .+++||=.|+ +|..+..+++.+- .+.+|++++.+++..+....        ..+ +++.+|..+.+...     -+.+
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~-----~~~~   85 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHA-----FASI   85 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGG-----GTTC
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHH-----HcCC
Confidence            4668997775 6777777777652 35799999999876543322        147 88999986322222     2578


Q ss_pred             eEEEEcCC
Q 023411          197 DFAFVDAE  204 (282)
Q Consensus       197 DlV~id~~  204 (282)
                      |.||..+.
T Consensus        86 D~vi~~ag   93 (236)
T 3e8x_A           86 DAVVFAAG   93 (236)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99998765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=87.19  E-value=2  Score=37.43  Aligned_cols=90  Identities=20%  Similarity=0.196  Sum_probs=55.6

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-CC--EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-SG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+|.=||+|  ..+..++..+.. +.  +|+++|.+++.++.+.    ..|..+  . ...+..+.   .     -...|
T Consensus        34 ~kI~IIG~G--~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~----~~G~~~--~-~~~~~~~~---~-----~~~aD   96 (314)
T 3ggo_A           34 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKV---E-----DFSPD   96 (314)
T ss_dssp             SEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCTTGG---G-----GGCCS
T ss_pred             CEEEEEeeC--HHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----HCCCcc--h-hcCCHHHH---h-----hccCC
Confidence            578889975  444444433311 23  8999999998766554    334322  1 12233220   1     24679


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +||+..+.......++.+.+.   +++|.+ |+|
T Consensus        97 vVilavp~~~~~~vl~~l~~~---l~~~~i-v~d  126 (314)
T 3ggo_A           97 FVMLSSPVRTFREIAKKLSYI---LSEDAT-VTD  126 (314)
T ss_dssp             EEEECSCGGGHHHHHHHHHHH---SCTTCE-EEE
T ss_pred             EEEEeCCHHHHHHHHHHHhhc---cCCCcE-EEE
Confidence            999988877777788888887   888765 454

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=86.73  E-value=1.4  Score=40.14  Aligned_cols=95  Identities=18%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      .+|+=+|+  |.++..+++.+. .+..|+.||.+++.++.+++    .|    +.++.||+.+. ..+...+ -...|+|
T Consensus         5 ~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~-~~L~~ag-i~~A~~v   72 (413)
T 3l9w_A            5 MRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRM-DLLESAG-AAKAEVL   72 (413)
T ss_dssp             CSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCH-HHHHHTT-TTTCSEE
T ss_pred             CeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCH-HHHHhcC-CCccCEE
Confidence            46777776  556666665552 24689999999998876653    23    56788998763 1222212 3678998


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++...........-...+.   +.|+..+++
T Consensus        73 iv~~~~~~~n~~i~~~ar~---~~p~~~Iia  100 (413)
T 3l9w_A           73 INAIDDPQTNLQLTEMVKE---HFPHLQIIA  100 (413)
T ss_dssp             EECCSSHHHHHHHHHHHHH---HCTTCEEEE
T ss_pred             EECCCChHHHHHHHHHHHH---hCCCCeEEE
Confidence            8766543322223333333   678766655

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=86.67  E-value=1.1  Score=39.51  Aligned_cols=101  Identities=13%  Similarity=0.068  Sum_probs=54.4

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEE-EecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH-HHHHHhCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVA-CERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNG  191 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~-iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~-l~~l~~~~  191 (282)
                      +..++++||-+|+  |.|..++.+++..  ++++++ ++.++... ...+.++..|..   .++.  ..+. ...+....
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~-~~~~~~~~lGa~---~vi~--~~~~~~~~~~~~~  235 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDIQ-KLSDRLKSLGAE---HVIT--EEELRRPEMKNFF  235 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCHH-HHHHHHHHTTCS---EEEE--HHHHHSGGGGGTT
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccchH-HHHHHHHhcCCc---EEEe--cCcchHHHHHHHH
Confidence            4567889999996  4677888888876  366554 44444321 112334455643   2222  1110 01111111


Q ss_pred             CC-CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          192 EA-SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       192 ~~-~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .. +.+|+||-.....   . .....++   |++||.++.=
T Consensus       236 ~~~~~~Dvvid~~g~~---~-~~~~~~~---l~~~G~iv~~  269 (357)
T 1zsy_A          236 KDMPQPRLALNCVGGK---S-STELLRQ---LARGGTMVTY  269 (357)
T ss_dssp             SSSCCCSEEEESSCHH---H-HHHHHTT---SCTTCEEEEC
T ss_pred             hCCCCceEEEECCCcH---H-HHHHHHh---hCCCCEEEEE
Confidence            01 2589988554422   1 2345566   9999998874

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=86.17  E-value=4.5  Score=35.73  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=51.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--HHHHHHhCCCCCcee
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASSYD  197 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~l~~~~~~~~fD  197 (282)
                      ..+|+-+||  |..+..+++.+.+...|+.+|.+.+.++.+++         .++.+..|+.+  .+..+.     ...|
T Consensus        16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~-----~~~D   79 (365)
T 3abi_A           16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVM-----KEFE   79 (365)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHH-----TTCS
T ss_pred             ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHH-----hCCC
Confidence            458999998  67777777777666889999999876654432         34556666644  333332     5679


Q ss_pred             EEEEcCCccccHHHHHHHH
Q 023411          198 FAFVDAEKRMYQEYFELLL  216 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~  216 (282)
                      +|+.-.++.......+.|.
T Consensus        80 vVi~~~p~~~~~~v~~~~~   98 (365)
T 3abi_A           80 LVIGALPGFLGFKSIKAAI   98 (365)
T ss_dssp             EEEECCCGGGHHHHHHHHH
T ss_pred             EEEEecCCcccchHHHHHH
Confidence            9887655443333344443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=85.89  E-value=3.8  Score=34.48  Aligned_cols=84  Identities=19%  Similarity=0.114  Sum_probs=57.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .+++.+|--|.+.| ++..+++.+ ..+++|+.+|.+++.++.+.+.++..|.  ++.++++|..+.  ...+.+.-  .
T Consensus         5 L~gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            5 LKNKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            36778888886655 566666554 2368999999999999888888887663  588999987652  11111110  1


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      -++.|+++.++.
T Consensus        82 ~G~iDiLVNNAG   93 (254)
T 4fn4_A           82 YSRIDVLCNNAG   93 (254)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            378999987654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=85.81  E-value=3.7  Score=34.32  Aligned_cols=83  Identities=13%  Similarity=0.035  Sum_probs=56.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCc
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~  195 (282)
                      .++++|-.|+ +|.++..+++.+. .+.+|+.++.+++.++...+.+...+...++.++.+|..+.  ...+.+.  -+.
T Consensus         9 ~~k~~lVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~g~   85 (267)
T 3t4x_A            9 KGKTALVTGS-TAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK--YPK   85 (267)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH--CCC
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh--cCC
Confidence            4567887775 4566666666552 36799999999988877777776655455688888887652  2222222  368


Q ss_pred             eeEEEEcCC
Q 023411          196 YDFAFVDAE  204 (282)
Q Consensus       196 fDlV~id~~  204 (282)
                      +|+++..+.
T Consensus        86 id~lv~nAg   94 (267)
T 3t4x_A           86 VDILINNLG   94 (267)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899998754

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=85.74  E-value=1  Score=40.16  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=47.0

Q ss_pred             cCCCEEEEEcccc---cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYT---GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~---G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      .++++||-+|+|.   |..++.+++..  +++|++++.+++..+.+++    .|.+.-+.....+..+.+..+..   ..
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~---~~  239 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV---ST  239 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH---HH
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc---CC
Confidence            5778899885444   55566677765  4789999999988777664    45443222222233332222211   23


Q ss_pred             ceeEEEEcCCc
Q 023411          195 SYDFAFVDAEK  205 (282)
Q Consensus       195 ~fDlV~id~~~  205 (282)
                      .+|+||-....
T Consensus       240 g~d~v~d~~g~  250 (379)
T 3iup_A          240 GATIAFDATGG  250 (379)
T ss_dssp             CCCEEEESCEE
T ss_pred             CceEEEECCCc
Confidence            69998865443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=85.71  E-value=4  Score=34.40  Aligned_cols=88  Identities=17%  Similarity=0.184  Sum_probs=53.0

Q ss_pred             EEEEEcccccHHHHHHHHHCCC-CC--EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC-cee
Q 023411          122 RCIEVGVYTGYSSLAIALVLPE-SG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYD  197 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~-~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~-~fD  197 (282)
                      +|.=||+|  ..+..++..+.. +.  +|+++|.+++..+.++    ..|...  . ...+..+.         -. ..|
T Consensus         3 ~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~---------~~~~aD   64 (281)
T 2g5c_A            3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKV---------EDFSPD   64 (281)
T ss_dssp             EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG---------GGTCCS
T ss_pred             EEEEEecC--HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHH---------hcCCCC
Confidence            67778875  444444443321 23  7999999987765543    334421  1 11222221         24 679


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +||+..........++.+.+.   ++++.+++.
T Consensus        65 vVilavp~~~~~~v~~~l~~~---l~~~~iv~~   94 (281)
T 2g5c_A           65 FVMLSSPVRTFREIAKKLSYI---LSEDATVTD   94 (281)
T ss_dssp             EEEECSCHHHHHHHHHHHHHH---SCTTCEEEE
T ss_pred             EEEEcCCHHHHHHHHHHHHhh---CCCCcEEEE
Confidence            999987766666777777777   888875543

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=85.51  E-value=4.8  Score=32.17  Aligned_cols=70  Identities=17%  Similarity=0.040  Sum_probs=47.2

Q ss_pred             EEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +||-+|+ +|..+..+++.+ ..+.+|++++.+++.....        ....++++.+|..+.....     -+.+|.||
T Consensus         2 kilVtGa-tG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~~D~~d~~~~~-----~~~~d~vi   67 (224)
T 3h2s_A            2 KIAVLGA-TGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--------LGATVATLVKEPLVLTEAD-----LDSVDAVV   67 (224)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--------TCTTSEEEECCGGGCCHHH-----HTTCSEEE
T ss_pred             EEEEEcC-CCHHHHHHHHHHHHCCCEEEEEEecccccccc--------cCCCceEEecccccccHhh-----cccCCEEE
Confidence            5777774 688888877765 2357999999987644321        1235899999987642222     25789999


Q ss_pred             EcCCc
Q 023411          201 VDAEK  205 (282)
Q Consensus       201 id~~~  205 (282)
                      ..+..
T Consensus        68 ~~ag~   72 (224)
T 3h2s_A           68 DALSV   72 (224)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            87653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.16  E-value=8.3  Score=32.25  Aligned_cols=83  Identities=19%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecC------------ccHHHHHHHHHHHhCCCCcEEEEEcchhhH--
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERD------------ARSLEVAKKYYERAGVSHKVKIKHGLAADS--  183 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s------------~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--  183 (282)
                      .+++||-.|++ |.++..+++.+- .+.+|+.+|.+            .+.++.+.+.+...+  .++.++.+|..+.  
T Consensus         9 ~gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A            9 QDKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            46788888865 556666666552 35799999987            555555555555544  4689999998653  


Q ss_pred             HHHHHhCC--CCCceeEEEEcCC
Q 023411          184 LKALILNG--EASSYDFAFVDAE  204 (282)
Q Consensus       184 l~~l~~~~--~~~~fDlV~id~~  204 (282)
                      ...+...-  ..+.+|+++..+.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg  108 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAG  108 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            11111100  0257899998755

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=84.72  E-value=4.3  Score=33.26  Aligned_cols=83  Identities=14%  Similarity=0.085  Sum_probs=53.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .+++||-.| |+|.++..+++.+- .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +..+...-  ..
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            456788666 46778888777653 35799999999877666655555443  3588899987652  22221100  01


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +.+|.||..+.
T Consensus        87 ~~~d~vi~~Ag   97 (255)
T 1fmc_A           87 GKVDILVNNAG   97 (255)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998654

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=84.37  E-value=6.2  Score=36.14  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=58.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHH------------HHhCCCCcEEEEEcchhhHHH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYY------------ERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~------------~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      ..-+|-=||+  |+++..+|..+.. +.+|+++|++++.++..++..            +.+-...++++. .|..+.  
T Consensus         7 ~~~~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~t-td~~ea--   81 (446)
T 4a7p_A            7 GSVRIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFT-TDLAEG--   81 (446)
T ss_dssp             CCCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEE-SCHHHH--
T ss_pred             CceEEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEE-CCHHHH--
Confidence            3446777776  5666666555432 468999999998876654420            000001233332 222221  


Q ss_pred             HHHhCCCCCceeEEEEcCC-cc----------ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          186 ALILNGEASSYDFAFVDAE-KR----------MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~-~~----------~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                       +      ...|+||+.-+ +.          ......+.+.+.   |++|.++|......+|.
T Consensus        82 -~------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~---l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           82 -V------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAEN---LTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             -H------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHS---CCSCCEEEECSCCCTTH
T ss_pred             -H------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHh---cCCCCEEEEeCCCCchH
Confidence             1      45689887633 21          234455566666   99988887766555554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=84.34  E-value=1.4  Score=39.93  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHH
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAK  161 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~  161 (282)
                      .++.+|+=+|+|. |..+..++..++  .+|+++|.+++..+.++
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            3578999999873 445566666664  79999999998776653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=84.29  E-value=1.4  Score=39.94  Aligned_cols=42  Identities=19%  Similarity=0.204  Sum_probs=32.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHH
Q 023411          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKK  162 (282)
Q Consensus       119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~  162 (282)
                      ++.+|+-||+| .|..+..++..+  +++|+++|.++..++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            57899999998 355666677776  4799999999988776654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=84.26  E-value=2.8  Score=34.74  Aligned_cols=83  Identities=23%  Similarity=0.121  Sum_probs=54.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC--CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      ++++||-.| |+|.++..+++.+-  .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+...-  .
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            356788666 56778888777653  36799999999877766666666543  3588899987652  22221100  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+.+|+||..+.
T Consensus        80 ~g~id~li~~Ag   91 (276)
T 1wma_A           80 YGGLDVLVNNAG   91 (276)
T ss_dssp             HSSEEEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            147999997754

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=84.14  E-value=14  Score=31.26  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=50.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .+++||-.|++ |.++..+++.+- .+.+|+.++.+++ ..+.+.+..+..+  .++.++.+|..+.  ...+...-  .
T Consensus        46 ~gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45688888864 556666666552 3579999998875 3444444454433  4689999998653  11111100  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+.+|+++..+.
T Consensus       123 ~g~iD~lvnnAg  134 (291)
T 3ijr_A          123 LGSLNILVNNVA  134 (291)
T ss_dssp             HSSCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899998644

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=84.06  E-value=10  Score=34.61  Aligned_cols=106  Identities=10%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHH------------HHHhCCCCcEEEEEcchhhHHH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~------------~~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      ....+|--||+  |+.+..++..+..+.+|+++|++++.++..++.            +.. + ..++++. .|..+.  
T Consensus        34 ~~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~-~~~l~~t-td~~ea--  106 (432)
T 3pid_A           34 SEFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K-PLNFRAT-TDKHDA--  106 (432)
T ss_dssp             -CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEEE-SCHHHH--
T ss_pred             cCCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c-cCCeEEE-cCHHHH--
Confidence            34457887886  556555555554357899999999887765541            111 0 1123332 222221  


Q ss_pred             HHHhCCCCCceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          186 ALILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                       +      ...|+||+..+..        +.......+..+.. |+||.++|......+|.
T Consensus       107 -~------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgt  159 (432)
T 3pid_A          107 -Y------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGF  159 (432)
T ss_dssp             -H------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTH
T ss_pred             -H------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHH
Confidence             1      4568998764422        12233333444444 78888888766666664

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=84.00  E-value=5.2  Score=30.37  Aligned_cols=97  Identities=12%  Similarity=-0.026  Sum_probs=50.5

Q ss_pred             cccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc
Q 023411          127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR  206 (282)
Q Consensus       127 G~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~  206 (282)
                      +.|+++.+....+......+|..+|-++...+..+..+...+.. .+.....+..+.+..+.    ...+|+|++|....
T Consensus         8 ~~~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~----~~~~dlvilD~~l~   82 (164)
T 3t8y_A            8 HHHSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFAKDGLEAVEKAI----ELKPDVITMDIEMP   82 (164)
T ss_dssp             ----------------CCEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHH----HHCCSEEEECSSCS
T ss_pred             ccccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHhc----cCCCCEEEEeCCCC
Confidence            34566666666665443468999999999888888888765421 12223456655555443    35799999997643


Q ss_pred             c--cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          207 M--YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       207 ~--~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .  -.+.++.+...    .+--++++..
T Consensus        83 ~~~g~~l~~~lr~~----~~~~ii~~s~  106 (164)
T 3t8y_A           83 NLNGIEALKLIMKK----APTRVIMVSS  106 (164)
T ss_dssp             SSCHHHHHHHHHHH----SCCEEEEEES
T ss_pred             CCCHHHHHHHHHhc----CCceEEEEec
Confidence            3  34455666554    3444555543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=83.92  E-value=6.7  Score=32.97  Aligned_cols=81  Identities=15%  Similarity=0.051  Sum_probs=56.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--H----HHHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~l~~~~  191 (282)
                      .++.+|--|.+. .++..+++.+. .+++|+.+|.+++.++.+.+.+...|.  ++..+.+|..+.  .    ...... 
T Consensus         8 ~gKvalVTGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~-   83 (255)
T 4g81_D            8 TGKTALVTGSAR-GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAE-   83 (255)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH-
Confidence            567788777654 46666666552 368999999999988888877777663  588888887552  1    222222 


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                       .++.|+++.++.
T Consensus        84 -~G~iDiLVNNAG   95 (255)
T 4g81_D           84 -GIHVDILINNAG   95 (255)
T ss_dssp             -TCCCCEEEECCC
T ss_pred             -CCCCcEEEECCC
Confidence             478999998754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=83.91  E-value=4.1  Score=34.21  Aligned_cols=85  Identities=16%  Similarity=0.165  Sum_probs=56.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .+++||-.|+ +|.++..+++.+- .+.+|+.++.+++.++...+.+...+...++.++.+|..+.  +..+...-  ..
T Consensus        31 ~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            4568887775 5667777766552 35799999999887777666676666556788899887653  12211100  01


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +.+|+||..+.
T Consensus       110 g~iD~vi~~Ag  120 (279)
T 1xg5_A          110 SGVDICINNAG  120 (279)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899998654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.89  E-value=4.5  Score=33.57  Aligned_cols=84  Identities=18%  Similarity=0.088  Sum_probs=53.5

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--
Q 023411          118 LGAQRCIEVGVY-TGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--  191 (282)
Q Consensus       118 ~~~~~VLEIG~G-~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--  191 (282)
                      .+.++||-.|++ +|.++..+++.+. .+.+|+.++.++...+.+++..+..+   ++.++.+|..+.  ...+.+.-  
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            467799988874 3556666666542 35799999998776666666555543   378888887652  12221100  


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                      ..+++|++|..+.
T Consensus        89 ~~g~id~lv~nAg  101 (271)
T 3ek2_A           89 HWDSLDGLVHSIG  101 (271)
T ss_dssp             HCSCEEEEEECCC
T ss_pred             HcCCCCEEEECCc
Confidence            1258999998754

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=83.79  E-value=8.1  Score=32.00  Aligned_cols=80  Identities=15%  Similarity=0.140  Sum_probs=51.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~--~~  193 (282)
                      .++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+     ..++.++.+|..+.-  ..+.+.-  ..
T Consensus         7 ~gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            7 QGKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            56788888865 55666666655 23679999999988766655544     236899999886531  1111100  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +.+|+++..+.
T Consensus        81 g~id~lv~nAg   91 (255)
T 4eso_A           81 GAIDLLHINAG   91 (255)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            58999998754

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=83.57  E-value=9.3  Score=33.79  Aligned_cols=90  Identities=8%  Similarity=0.117  Sum_probs=54.7

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ..+|.=||+  |..+..++..+. .+.+|+++|.+++..+.+.+    .|.    .. ..+..+....      ....|+
T Consensus        22 ~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~~-~~s~~e~~~~------a~~~Dv   84 (358)
T 4e21_A           22 SMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----AG-ARSIEEFCAK------LVKPRV   84 (358)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----BC-CSSHHHHHHH------SCSSCE
T ss_pred             CCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----EE-eCCHHHHHhc------CCCCCE
Confidence            457888887  555555555442 24689999999876654432    232    11 2233333332      245699


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      ||+..........++.+.+.   |++|.++|
T Consensus        85 Vi~~vp~~~v~~vl~~l~~~---l~~g~iiI  112 (358)
T 4e21_A           85 VWLMVPAAVVDSMLQRMTPL---LAANDIVI  112 (358)
T ss_dssp             EEECSCGGGHHHHHHHHGGG---CCTTCEEE
T ss_pred             EEEeCCHHHHHHHHHHHHhh---CCCCCEEE
Confidence            99876655666667777776   88876554

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=83.46  E-value=7.5  Score=32.32  Aligned_cols=82  Identities=17%  Similarity=0.101  Sum_probs=55.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHH----HHhC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKA----LILN  190 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~----l~~~  190 (282)
                      ..++++|-.|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++.+|..+.  ...    +.+.
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35678888887554 555555554 236799999999988887777776654  4589999997653  122    1111


Q ss_pred             CCCCceeEEEEcCC
Q 023411          191 GEASSYDFAFVDAE  204 (282)
Q Consensus       191 ~~~~~fDlV~id~~  204 (282)
                        .+++|+++..+.
T Consensus        86 --~g~id~lv~nAg   97 (264)
T 3ucx_A           86 --YGRVDVVINNAF   97 (264)
T ss_dssp             --TSCCSEEEECCC
T ss_pred             --cCCCcEEEECCC
Confidence              258999998763

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=83.35  E-value=6.6  Score=35.30  Aligned_cols=89  Identities=15%  Similarity=0.092  Sum_probs=54.4

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCC----CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--HHHHHHhCCCCC
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPES----GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEAS  194 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~----~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~l~~~~~~~  194 (282)
                      ++|+=+|+  |+.+..+++.+...    .+|+.++.+++..+...+.+...+ ..++..+..|..+  .+..+..   ..
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~---~~   75 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALIN---EV   75 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHH---HH
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHH---hh
Confidence            37888888  46777776655322    389999999887776666555432 1247888888754  2333321   11


Q ss_pred             ceeEEEEcCCccccHHHHHHH
Q 023411          195 SYDFAFVDAEKRMYQEYFELL  215 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~  215 (282)
                      ..|+|+............+.+
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~   96 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEAC   96 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHH
T ss_pred             CCCEEEECCCcccChHHHHHH
Confidence            479999876654333333333

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.18  E-value=2.5  Score=39.40  Aligned_cols=88  Identities=10%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       117 ~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...+++|+-+|+|. |......++.+  +.+|+++|.++...+.+++    .|.    ++  .+..+    .     -..
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e----~-----l~~  329 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEE----A-----IGD  329 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHH----H-----GGG
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHH----H-----HhC
Confidence            35688999999852 44444455554  4799999999886655432    343    22  22222    2     246


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .|+|+......+..  -....+.   +|+||+++-
T Consensus       330 aDvVi~atgt~~~i--~~~~l~~---mk~ggilvn  359 (494)
T 3ce6_A          330 ADIVVTATGNKDII--MLEHIKA---MKDHAILGN  359 (494)
T ss_dssp             CSEEEECSSSSCSB--CHHHHHH---SCTTCEEEE
T ss_pred             CCEEEECCCCHHHH--HHHHHHh---cCCCcEEEE
Confidence            79999865433321  1245566   899998875

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=83.15  E-value=23  Score=31.04  Aligned_cols=119  Identities=7%  Similarity=-0.044  Sum_probs=68.3

Q ss_pred             HHHHHhhc-CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---------------------
Q 023411          111 LAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------------------  168 (282)
Q Consensus       111 l~~l~~~~-~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---------------------  168 (282)
                      +..++... +...|+-+|||.=.-...+.....++.+++=||. |+.++.=++.+...+                     
T Consensus        81 v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~  159 (334)
T 3iei_A           81 IKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHI  159 (334)
T ss_dssp             HHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTE
T ss_pred             HHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhccccccccccccccc
Confidence            33434433 5679999999876666666543212568888887 555554444444311                     


Q ss_pred             -CCCcEEEEEcchhh--HHHH-HHhCC-CCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          169 -VSHKVKIKHGLAAD--SLKA-LILNG-EASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       169 -~~~~v~~~~gd~~~--~l~~-l~~~~-~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                       ...+.+++.+|..+  .+.. +...+ +.+..=+++..+.     .+.....++.+...   ..+|..++.+-+
T Consensus       160 l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~---f~~~~~i~yE~i  231 (334)
T 3iei_A          160 LDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANS---FERAMFINYEQV  231 (334)
T ss_dssp             EECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHH---CSSEEEEEEEEC
T ss_pred             CCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHh---CCCceEEEEecc
Confidence             14578999999876  3333 22222 2334446666665     33455667777766   555555555544

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=83.10  E-value=2.6  Score=37.14  Aligned_cols=101  Identities=15%  Similarity=0.176  Sum_probs=58.3

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc--hhhHHHHHHhCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL--AADSLKALILNG  191 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd--~~~~l~~l~~~~  191 (282)
                      +...++++||-+|+| .|..+..+++... +++|+++|.+++..+.+++    .|.+.   ++..+  ..+.+..+.   
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~v~~~~---  250 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGADH---VVDARRDPVKQVMELT---  250 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCSE---EEETTSCHHHHHHHHT---
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCE---EEeccchHHHHHHHHh---
Confidence            455678899999985 3555667777662 4799999999887776653    45332   22211  112222221   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ....+|+||-...... ...++...+    + ++|.++.=.
T Consensus       251 ~g~g~Dvvid~~G~~~-~~~~~~~~~----~-~~G~~v~~g  285 (359)
T 1h2b_A          251 RGRGVNVAMDFVGSQA-TVDYTPYLL----G-RMGRLIIVG  285 (359)
T ss_dssp             TTCCEEEEEESSCCHH-HHHHGGGGE----E-EEEEEEECC
T ss_pred             CCCCCcEEEECCCCch-HHHHHHHhh----c-CCCEEEEEe
Confidence            1237999986544321 002333332    4 899887743

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=82.60  E-value=8.6  Score=32.03  Aligned_cols=77  Identities=22%  Similarity=0.247  Sum_probs=46.0

Q ss_pred             CEEEEEcccc-cHHH-HHHHHHCCCCCEEEEEecCc-------------------cHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          121 QRCIEVGVYT-GYSS-LAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       121 ~~VLEIG~G~-G~~t-~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      .+|+=+|+|. |... ..++.. + -++++.+|.+.                   .-.+.+++.+...+..-+++.+..+
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~-G-v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASA-G-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHc-C-CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            4899999862 3322 223332 2 26899999987                   5667777777765433346666554


Q ss_pred             hhh-HHHHHHhCCCCCceeEEEEcCC
Q 023411          180 AAD-SLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       180 ~~~-~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      ..+ ....+     -..+|+|+...+
T Consensus       110 ~~~~~~~~~-----~~~~DvVi~~~d  130 (249)
T 1jw9_B          110 LDDAELAAL-----IAEHDLVLDCTD  130 (249)
T ss_dssp             CCHHHHHHH-----HHTSSEEEECCS
T ss_pred             CCHhHHHHH-----HhCCCEEEEeCC
Confidence            432 22222     257899987554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=82.58  E-value=12  Score=27.95  Aligned_cols=41  Identities=17%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHH
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVA  160 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a  160 (282)
                      ..+++|+=||+  |..+..++..+.. +.+|+.+|.+++..+..
T Consensus        19 ~~~~~v~iiG~--G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~   60 (144)
T 3oj0_A           19 NGGNKILLVGN--GMLASEIAPYFSYPQYKVTVAGRNIDHVRAF   60 (144)
T ss_dssp             HCCCEEEEECC--SHHHHHHGGGCCTTTCEEEEEESCHHHHHHH
T ss_pred             ccCCEEEEECC--CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence            34789999997  6777777777642 45799999998765543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=82.58  E-value=4.5  Score=33.53  Aligned_cols=83  Identities=16%  Similarity=0.167  Sum_probs=55.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC-CCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG-EAS  194 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~-~~~  194 (282)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++.++.+.+.++..+  .++.++.+|..+.  ...+...- +.+
T Consensus         6 ~~k~vlVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            6 RNATVAVIGAG-DYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             CSCEEEEECCS-SHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            45678878865 456666666552 35799999999998888877777654  4689999998653  22221110 015


Q ss_pred             ceeEEEEcCC
Q 023411          195 SYDFAFVDAE  204 (282)
Q Consensus       195 ~fDlV~id~~  204 (282)
                      .+|+++..+.
T Consensus        83 ~id~lv~nAg   92 (252)
T 3h7a_A           83 PLEVTIFNVG   92 (252)
T ss_dssp             CEEEEEECCC
T ss_pred             CceEEEECCC
Confidence            7999998765

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=82.57  E-value=3.2  Score=36.82  Aligned_cols=94  Identities=14%  Similarity=0.070  Sum_probs=56.0

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHH------hCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~------~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .+|.=||+  |.++..++..+.. +.+|+.+|.+++.++..++.-..      ..+..++++. .|..+   .+      
T Consensus        30 mkI~VIGa--G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~d~~e---a~------   97 (356)
T 3k96_A           30 HPIAILGA--GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-CDLKA---SL------   97 (356)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-SCHHH---HH------
T ss_pred             CeEEEECc--cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-CCHHH---HH------
Confidence            47888887  4555555554432 34799999998876655543110      0111223332 22222   12      


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      ...|+||+.-+.....+.++.+.+.   ++++.+++
T Consensus        98 ~~aDvVilaVp~~~~~~vl~~i~~~---l~~~~ivv  130 (356)
T 3k96_A           98 EGVTDILIVVPSFAFHEVITRMKPL---IDAKTRIA  130 (356)
T ss_dssp             TTCCEEEECCCHHHHHHHHHHHGGG---CCTTCEEE
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHHh---cCCCCEEE
Confidence            4679999887766666777777777   88876554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=82.47  E-value=2.4  Score=47.33  Aligned_cols=103  Identities=9%  Similarity=0.078  Sum_probs=65.3

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +..++++||-.|+  |.|..++.+++..  +++|++++.+++..+.+++.+...|...   ++.....+....+......
T Consensus      1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~~---v~~~~~~~~~~~i~~~t~g 1738 (2512)
T 2vz8_A         1664 RMQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDETC---FANSRDTSFEQHVLRHTAG 1738 (2512)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCSTT---EEESSSSHHHHHHHHTTTS
T ss_pred             cCCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCceE---EecCCCHHHHHHHHHhcCC
Confidence            3567889998864  5677788888886  4799999998887776665432233332   2222222333333322223


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..+|+||-...    ...++...++   |+++|.++.
T Consensus      1739 ~GvDvVld~~g----~~~l~~~l~~---L~~~Gr~V~ 1768 (2512)
T 2vz8_A         1739 KGVDLVLNSLA----EEKLQASVRC---LAQHGRFLE 1768 (2512)
T ss_dssp             CCEEEEEECCC----HHHHHHHHTT---EEEEEEEEE
T ss_pred             CCceEEEECCC----chHHHHHHHh---cCCCcEEEE
Confidence            57999986443    3457777787   999998875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=82.36  E-value=4.3  Score=32.57  Aligned_cols=74  Identities=14%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             CEEEEEcccccHHHHHHHHHCC--CCCEEEEEecCcc-HHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCc
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS  195 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~--~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~  195 (282)
                      ++||-+|+ +|..+..+++.+-  .+.+|++++.+++ .++...    .  ...++.++.+|..+.  +...     -..
T Consensus         6 k~vlVtGa-sg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~--~~~~~~~~~~D~~d~~~~~~~-----~~~   73 (221)
T 3r6d_A            6 XYITILGA-AGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----I--DHERVTVIEGSFQNPGXLEQA-----VTN   73 (221)
T ss_dssp             SEEEEEST-TSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----H--TSTTEEEEECCTTCHHHHHHH-----HTT
T ss_pred             EEEEEEeC-CcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----c--CCCceEEEECCCCCHHHHHHH-----HcC
Confidence            35887774 5777777666553  4679999999876 433221    1  124589999998753  2333     256


Q ss_pred             eeEEEEcCCcc
Q 023411          196 YDFAFVDAEKR  206 (282)
Q Consensus       196 fDlV~id~~~~  206 (282)
                      +|+||......
T Consensus        74 ~d~vv~~ag~~   84 (221)
T 3r6d_A           74 AEVVFVGAMES   84 (221)
T ss_dssp             CSEEEESCCCC
T ss_pred             CCEEEEcCCCC
Confidence            89999887653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.35  E-value=5.5  Score=33.07  Aligned_cols=84  Identities=18%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-cccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGV-YTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~-G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .+++||-.|+ |.| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+ ..++.++.+|..+.  ...+...-  .
T Consensus        21 ~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            4668888876 444 344444433 236799999999988877777775543 24699999998653  11111100  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+++|+++..+.
T Consensus        99 ~g~id~li~~Ag  110 (266)
T 3o38_A           99 AGRLDVLVNNAG  110 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCcEEEECCC
Confidence            257899998765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=82.31  E-value=8.6  Score=31.38  Aligned_cols=81  Identities=14%  Similarity=0.123  Sum_probs=55.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHH----HHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKA----LILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~----l~~~~  191 (282)
                      .++++|=.|+ +|.++..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  ...    +... 
T Consensus         4 ~~k~vlITGa-s~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   79 (247)
T 3lyl_A            4 NEKVALVTGA-SRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE-   79 (247)
T ss_dssp             TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH-
Confidence            3567887775 5666666666552 35799999999988877777776654  3589999998653  122    2211 


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                       .+++|+++..+.
T Consensus        80 -~~~id~li~~Ag   91 (247)
T 3lyl_A           80 -NLAIDILVNNAG   91 (247)
T ss_dssp             -TCCCSEEEECCC
T ss_pred             -cCCCCEEEECCC
Confidence             357899998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=82.16  E-value=4.7  Score=37.27  Aligned_cols=105  Identities=10%  Similarity=0.102  Sum_probs=58.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHH---hCC---------CCcEEEEEcchhhHHH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER---AGV---------SHKVKIKHGLAADSLK  185 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~---~g~---------~~~v~~~~gd~~~~l~  185 (282)
                      ...+|.-||+|  +.+..++..+.. +.+|+++|++++.++..++....   .++         ..++++. .|..+.+ 
T Consensus         7 ~~~~I~VIG~G--~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~t-td~~~a~-   82 (478)
T 2y0c_A            7 GSMNLTIIGSG--SVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFS-TDIEAAV-   82 (478)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE-CCHHHHH-
T ss_pred             CCceEEEECcC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEE-CCHHHHh-
Confidence            45588889876  444443333321 45899999999877665542100   000         1123332 2222211 


Q ss_pred             HHHhCCCCCceeEEEEcCCc----------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          186 ALILNGEASSYDFAFVDAEK----------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~----------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                              ...|+||+.-+.          ......++.+.+.   +++|.+++......+|.
T Consensus        83 --------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~---l~~~~iVV~~STv~~gt  134 (478)
T 2y0c_A           83 --------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRY---MTGFKVIVDKSTVPVGT  134 (478)
T ss_dssp             --------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHH---CCSCEEEEECSCCCTTH
T ss_pred             --------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHh---cCCCCEEEEeCCcCCCc
Confidence                    356899886543          3455566677777   99988776654444443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=82.09  E-value=2.9  Score=38.53  Aligned_cols=71  Identities=20%  Similarity=0.298  Sum_probs=49.7

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCcee
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYD  197 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~fD  197 (282)
                      .+|+=+||  |..+..+++.+.. +..|+.||.+++.++.+.+.+       .+..++||+.+.  +...   + -+..|
T Consensus         4 M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A---g-i~~ad   70 (461)
T 4g65_A            4 MKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA---G-AQDAD   70 (461)
T ss_dssp             EEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH---T-TTTCS
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc---C-CCcCC
Confidence            46776665  6788888888853 357999999999887665543       278899998763  3332   2 46789


Q ss_pred             EEEEcCC
Q 023411          198 FAFVDAE  204 (282)
Q Consensus       198 lV~id~~  204 (282)
                      +++.--.
T Consensus        71 ~~ia~t~   77 (461)
T 4g65_A           71 MLVAVTN   77 (461)
T ss_dssp             EEEECCS
T ss_pred             EEEEEcC
Confidence            8876433

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.89  E-value=7  Score=32.55  Aligned_cols=85  Identities=15%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~~--~~  193 (282)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++.++.+.+.+....-..++.++.+|..+..  ..+...-  ..
T Consensus         7 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            7 SEAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            45688888865 456666665542 367999999999888777776665322335889999876531  1111100  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +.+|+++..+.
T Consensus        86 g~id~lvnnAg   96 (265)
T 3lf2_A           86 GCASILVNNAG   96 (265)
T ss_dssp             CSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899998754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=81.80  E-value=4.7  Score=34.04  Aligned_cols=85  Identities=14%  Similarity=0.020  Sum_probs=55.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH---HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS---LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~---l~~l~~~~--~  192 (282)
                      .+++||-.|++ |.++..+++.+ ..+.+|+.++.+++..+.+.+.+...+. .++.++.+|..+.   ...+...-  .
T Consensus        11 ~~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           11 KRRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             -CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            45678877764 56677766665 2367999999999887777766665443 3699999988653   11111100  0


Q ss_pred             CCceeEEEEcCCc
Q 023411          193 ASSYDFAFVDAEK  205 (282)
Q Consensus       193 ~~~fDlV~id~~~  205 (282)
                      .+.+|++|..+..
T Consensus        89 ~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 FGKLDILVNNAGV  101 (311)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2589999988763

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=81.46  E-value=7.8  Score=35.31  Aligned_cols=106  Identities=9%  Similarity=0.225  Sum_probs=54.1

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC------CC
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN------GE  192 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~------~~  192 (282)
                      +.+.--||+  |+.+..+|..+.+ +.+|+++|++++.++..++.     ..   .+..-...+.+......      .+
T Consensus        11 ~~~~~ViGl--GyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g-----~~---pi~epgl~~ll~~~~~~g~l~~ttd   80 (431)
T 3ojo_A           11 GSKLTVVGL--GYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNG-----QI---SIEEPGLQEVYEEVLSSGKLKVSTT   80 (431)
T ss_dssp             -CEEEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-----CC---SSCCTTHHHHHHHHHHTTCEEEESS
T ss_pred             CCccEEEee--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCC-----CC---CcCCCCHHHHHHhhcccCceEEeCc
Confidence            345555676  5555555554432 45899999999877665431     10   00111111111110000      00


Q ss_pred             CCceeEEEEcCCcc---------ccHHH---HHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          193 ASSYDFAFVDAEKR---------MYQEY---FELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       193 ~~~fDlV~id~~~~---------~~~~~---l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ...-|+||+.-+.+         +....   .+.+.+.   |++|.++|......+|.
T Consensus        81 ~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~---l~~g~iVV~~STV~pgt  135 (431)
T 3ojo_A           81 PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPF---LKKGNTIIVESTIAPKT  135 (431)
T ss_dssp             CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGG---CCTTEEEEECSCCCTTH
T ss_pred             hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHh---CCCCCEEEEecCCChhH
Confidence            13468888753311         22222   3444455   89998888777777775

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=81.27  E-value=6.2  Score=32.63  Aligned_cols=85  Identities=16%  Similarity=0.037  Sum_probs=54.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++.++.+.+.+...... .++.++.+|..+.  ...+...-  .
T Consensus         6 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGAS-QGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTT-SHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            45678877765 555666655542 2579999999998887777777665322 4688899887652  11111100  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+.+|+++..+.
T Consensus        85 ~g~iD~lvnnAg   96 (250)
T 3nyw_A           85 YGAVDILVNAAA   96 (250)
T ss_dssp             HCCEEEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            258999998765

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=81.15  E-value=5.8  Score=34.20  Aligned_cols=80  Identities=9%  Similarity=0.074  Sum_probs=51.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCC---CcEEEEEcchhhH--HHHHHhCCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADS--LKALILNGE  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~~~--l~~l~~~~~  192 (282)
                      ..++||-.| |+|.++..+++.+ ..+.+|++++.++.......+.+......   .+++++.+|..+.  +..+     
T Consensus        24 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-----   97 (351)
T 3ruf_A           24 SPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV-----   97 (351)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH-----
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-----
Confidence            456899777 4788888887766 23579999998664322222222221100   3699999998663  3333     


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      -..+|.||..+.
T Consensus        98 ~~~~d~Vih~A~  109 (351)
T 3ruf_A           98 MKGVDHVLHQAA  109 (351)
T ss_dssp             TTTCSEEEECCC
T ss_pred             hcCCCEEEECCc
Confidence            357899998765

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=81.12  E-value=6.7  Score=33.45  Aligned_cols=83  Identities=18%  Similarity=0.090  Sum_probs=55.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .+++||-.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++.+|..+.  ...+...-  ..
T Consensus        30 ~gk~vlVTGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGA-SGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            56788888875 55666666655 235799999999988888777776654  3589999998653  22221100  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +.+|+++..+.
T Consensus       107 g~id~lvnnAg  117 (301)
T 3tjr_A          107 GGVDVVFSNAG  117 (301)
T ss_dssp             SSCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            57899998765

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=80.80  E-value=10  Score=31.45  Aligned_cols=83  Identities=14%  Similarity=0.043  Sum_probs=51.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEE-ecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~i-D~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .++++|-.|++ |.++..+++.+. .+.+|+.+ +.+++..+.+.+.++..+  .++.++.+|..+.  ...+.+.-  .
T Consensus         7 ~~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAG-RDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788888865 456666666552 35788888 666666666666665544  4588899987653  12221100  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+.+|+++..+.
T Consensus        84 ~g~id~lv~nAg   95 (259)
T 3edm_A           84 FGEIHGLVHVAG   95 (259)
T ss_dssp             HCSEEEEEECCC
T ss_pred             hCCCCEEEECCC
Confidence            258999998753

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=80.70  E-value=6.3  Score=33.20  Aligned_cols=83  Identities=22%  Similarity=0.234  Sum_probs=53.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++.++.+.+.+...+  .++.++.+|..+.  ...+...-  ..
T Consensus        23 ~~k~~lVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           23 RPQTAFVTGVS-SGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             --CEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45688888864 556666666552 36799999999988877777676544  4589999998653  11111100  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +++|+++..+.
T Consensus       100 g~id~lv~nAg  110 (279)
T 3sju_A          100 GPIGILVNSAG  110 (279)
T ss_dssp             CSCCEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            57899998754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=80.67  E-value=6.8  Score=32.91  Aligned_cols=85  Identities=11%  Similarity=0.003  Sum_probs=55.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .+++||-.|+ +|.++..+++.+ ..+.+|+.++.+++.++.+.+.++..+.. .++.++.+|..+.  ...+.+.-  .
T Consensus        10 ~~k~vlVTGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           10 QDRTYLVTGG-GSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4568887876 455666666655 23679999999998887777777655432 2689999998653  11111100  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+++|+++..+.
T Consensus        89 ~g~id~lv~nAg  100 (281)
T 3svt_A           89 HGRLHGVVHCAG  100 (281)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899998755

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=80.34  E-value=8.2  Score=31.82  Aligned_cols=84  Identities=8%  Similarity=-0.037  Sum_probs=53.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch--hh--HHHHHHhCC--
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA--AD--SLKALILNG--  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~--~~--~l~~l~~~~--  191 (282)
                      .++++|-.|++ |.++..+++.+. .+.+|+.++.+++.++.+.+.+...+- .++.++.+|.  .+  ....+...-  
T Consensus        11 ~~k~vlVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           11 NDRIILVTGAS-DGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHH
Confidence            46688877764 556666666552 367999999999887777666665442 2478888887  32  122221100  


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                      ..+.+|+++..+.
T Consensus        89 ~~g~id~lv~nAg  101 (252)
T 3f1l_A           89 NYPRLDGVLHNAG  101 (252)
T ss_dssp             HCSCCSEEEECCC
T ss_pred             hCCCCCEEEECCc
Confidence            1358999998654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=80.32  E-value=10  Score=34.72  Aligned_cols=78  Identities=19%  Similarity=0.149  Sum_probs=55.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +.++|+=+|.  |..+.++|+.+.+..+|.-+|.+++..+.+.+.+     + +..+++||+.+. .-+...+ -+..|+
T Consensus       234 ~~~~v~I~Gg--G~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l-----~-~~~Vi~GD~td~-~~L~ee~-i~~~D~  303 (461)
T 4g65_A          234 PYRRIMIVGG--GNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL-----E-NTIVFCGDAADQ-ELLTEEN-IDQVDV  303 (461)
T ss_dssp             CCCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC-----T-TSEEEESCTTCH-HHHHHTT-GGGCSE
T ss_pred             cccEEEEEcc--hHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC-----C-CceEEeccccch-hhHhhcC-chhhcE
Confidence            4568887764  6788888888876789999999998877766654     2 478999999873 1122111 368899


Q ss_pred             EEEcCCcc
Q 023411          199 AFVDAEKR  206 (282)
Q Consensus       199 V~id~~~~  206 (282)
                      ++.--...
T Consensus       304 ~ia~T~~D  311 (461)
T 4g65_A          304 FIALTNED  311 (461)
T ss_dssp             EEECCSCH
T ss_pred             EEEcccCc
Confidence            88765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	1e-57
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	4e-57
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	1e-44
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	1e-11
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	2e-08
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	4e-08
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	2e-06
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	0.003

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  181 bits (461), Expect = 1e-57
 Identities = 83/220 (37%), Positives = 127/220 (57%), Gaps = 8/220 (3%)

Query: 67  SVTPP----LYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQ 121
            + PP    L+ Y+L   +RE   LR LR  T         ++ +QAQLLA L +++ A+
Sbjct: 2   CLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAK 61

Query: 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181
           + +++G +TGYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ ++   A 
Sbjct: 62  KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL 121

Query: 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD 241
           ++L  L+  GEA ++D A VDA+K     Y+E  LQLL     GGI+ +  VLW GKV  
Sbjct: 122 ETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRP---GGILAVLRVLWRGKVLQ 178

Query: 242 QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 281
               D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 179 PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 218

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  181 bits (459), Expect = 4e-57
 Identities = 84/226 (37%), Positives = 127/226 (56%), Gaps = 13/226 (5%)

Query: 66  ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR 122
           +  +  LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++ A+ 
Sbjct: 3   LLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKN 62

Query: 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182
            +E+GVYTGYS LA AL +PE G ++A + +  + E+     ++AGV HK+  + G A  
Sbjct: 63  TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 122

Query: 183 SLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVAD 241
            L  +I +     SYDF FVDA+K  Y  Y + L+ L   ++VGG+I  DN LW+G V  
Sbjct: 123 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL---VKVGGVIGYDNTLWNGSVVA 179

Query: 242 QMVNDAKTIS------IRNFNKNLMEDERVSISMVPIGDGMTICQK 281
                 +         +   NK L  D R+ I M+P+GDG+TIC++
Sbjct: 180 PPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 225

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  148 bits (374), Expect = 1e-44
 Identities = 41/213 (19%), Positives = 88/213 (41%), Gaps = 10/213 (4%)

Query: 72  LYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           +  Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y
Sbjct: 7   ILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAY 66

Query: 130 TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189
            GYS++ +A +L     L+  E +     + ++    AG+  KV I +G + D +  L  
Sbjct: 67  CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK 126

Query: 190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKT 249
             +  + D  F+D  K  Y     LL +  L +R G +++ DNV+  G            
Sbjct: 127 KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGL-LRKGTVLLADNVIVPGTPDFLAY----- 180

Query: 250 ISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 282
             +R  +          +  + + DG+     +
Sbjct: 181 --VRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 211

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 60.9 bits (147), Expect = 1e-11
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 17/213 (7%)

Query: 68  VTPPLYDYILRNVREPEILRQLREETAGM---RGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +T    D+ L   R  E  R L          RG +M   PD   +   ++  L  +  +
Sbjct: 28  LTDRPRDWPL--DRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIV 85

Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
           E+GVY G S      +    G         R L   +             I       S 
Sbjct: 86  ELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----DMENITLHQGDCSD 140

Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI-DNVLWHGKVADQM 243
                +    ++   F+D          +  +  LL    G   +I D + +  + A Q+
Sbjct: 141 LTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLL--EEGDYFIIEDMIPYWYRYAPQL 198

Query: 244 VNDAKTISIRNFNKNLMEDERVSISMVPIGDGM 276
            ++     +  F   L  D   + +   +  G+
Sbjct: 199 FSE----YLGAFRDVLSMDMLYANASSQLDRGV 227

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           R +Q+    D + ++     +      +EVGV +G  S  I   L   G L   ERD  +
Sbjct: 64  RNTQIISEIDASYIIMRC-GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDN 122

Query: 157 LEVAKKYYERAGVSHKVKIKHG 178
           L+ A            V+    
Sbjct: 123 LKKAMDNLSEFYDIGNVRTSRS 144

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 12/140 (8%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARS 156
           RG+ +   P    ++  ++ I      +E G  +G  SL ++  +   G +++ E     
Sbjct: 77  RGTAI-TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDH 135

Query: 157 LEVAKKYYERAGVSHKVKIKHGLAAD------SLKALILNGEASSYDFAFVDAEKRMYQE 210
            ++AKK Y+    S K+        +       +     + ++ ++D   +D        
Sbjct: 136 HDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNP--HV 193

Query: 211 YFELLLQLLLQIRVGGIIVI 230
              +    L   + GG+  +
Sbjct: 194 TLPVFYPHL---KHGGVCAV 210

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 29/170 (17%), Positives = 63/170 (37%), Gaps = 26/170 (15%)

Query: 61  SNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +    + + P L DY++   R P++                 + P  A  +     I   
Sbjct: 55  NGALFLVLRPLLVDYVMSMPRGPQV-----------------IYPKDAAQIVHEGDIFPG 97

Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
            R +E G  +G  +L++   +  +G +++ E+ A   E A++             +  ++
Sbjct: 98  ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157

Query: 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230
             +   L       S D A +D       E  + + +LL     GG++++
Sbjct: 158 DLADSELP----DGSVDRAVLDMLA--PWEVLDAVSRLL---VAGGVLMV 198

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 12/118 (10%), Positives = 39/118 (33%), Gaps = 8/118 (6%)

Query: 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172
           +  Q+    + ++VG  +G  +   A ++  +G ++  +     ++ +     +   +  
Sbjct: 70  LFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL 129

Query: 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI 230
              +  L     +                 A   + Q   +       Q++ GG +++
Sbjct: 130 SSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPV-VPQALID-------QLKPGGRLIL 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.97
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.76
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.74
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.74
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.73
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.72
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.7
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.7
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.7
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.69
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.69
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.66
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.66
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.66
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.64
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.63
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.62
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.6
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.59
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.59
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.59
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.58
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.58
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.57
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.57
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.57
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.56
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.56
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.56
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.55
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.54
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.53
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.52
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.51
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.51
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.51
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.51
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.51
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.5
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.48
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.48
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.48
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.47
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.47
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.47
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.46
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.45
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.42
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.41
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.41
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.39
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.39
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.35
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.34
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.34
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.33
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.32
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.32
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.3
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.3
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.26
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.26
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.25
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.25
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.24
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.24
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.19
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.19
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.17
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.16
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.16
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.15
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.14
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.11
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.02
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.91
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.83
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.81
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.81
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.67
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.67
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.66
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.66
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.65
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.64
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.62
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.6
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.54
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.52
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.46
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.44
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.29
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.22
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.17
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.92
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.68
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.62
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.53
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.46
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.46
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.44
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.43
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.42
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.34
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.21
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.14
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.07
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.93
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.87
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.83
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.58
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.53
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.52
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.51
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.37
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.19
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.19
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.05
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.99
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.89
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.62
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.55
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.38
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.36
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.36
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.33
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.95
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.82
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.68
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.48
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.48
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.38
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.12
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	93.9
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	93.81
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.46
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.45
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.41
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	93.39
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.84
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.77
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	92.31
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	92.24
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.9
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	91.01
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.93
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	89.62
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.3
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	88.65
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.25
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.09
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	87.98
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.97
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	87.08
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	86.94
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	86.6
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	86.51
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	86.26
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	86.22
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.19
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	85.93
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	85.8
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	85.61
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.12
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	84.92
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	84.86
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.7
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	84.11
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	83.95
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	83.61
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.23
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.8
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	82.42
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	82.2
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	82.05
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	81.71
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	81.39
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	81.33
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.85
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	80.39
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	80.15
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.05

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=287.37  Aligned_cols=211  Identities=38%  Similarity=0.657  Sum_probs=200.1

Q ss_pred             CChhHHHHHHhc-cCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCE
Q 023411           68 VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (282)
Q Consensus        68 ~~~~l~~y~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~  146 (282)
                      .++.+++|+.++ .++++.++++++++.++..+.|.++|++++++..+++..++++|||||||+|++|++++.+++++++
T Consensus         7 ~~~~l~~Y~~~~~~~~~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~   86 (219)
T d2avda1           7 EDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGR   86 (219)
T ss_dssp             TTSHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCE
T ss_pred             CcHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCce
Confidence            457899999998 4678999999999988877788999999999999999999999999999999999999999988899


Q ss_pred             EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCc
Q 023411          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG  226 (282)
                      ++++|.+++..+.|+++++.+|+.++++++.||+.+.++.+...+..++||+||+|+.++.+..+++.+.++   |+|||
T Consensus        87 i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~l---L~~GG  163 (219)
T d2avda1          87 VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQL---LRPGG  163 (219)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHH---EEEEE
T ss_pred             EEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeCCHHHHHHHHHHHHHH---hcCCc
Confidence            999999999999999999999999999999999999988877666568999999999999999999999999   99999


Q ss_pred             EEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 023411          227 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  281 (282)
Q Consensus       227 ~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k  281 (282)
                      +|++||++|+|.+.++...+..+.++++|++.+.++|+++++++|+|||+++|+|
T Consensus       164 vii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigdGl~ia~K  218 (219)
T d2avda1         164 ILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK  218 (219)
T ss_dssp             EEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEE
T ss_pred             EEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCCeeEEEEe
Confidence            9999999999999999888899999999999999999999999999999999998

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.4e-41  Score=286.67  Aligned_cols=214  Identities=39%  Similarity=0.681  Sum_probs=196.8

Q ss_pred             cCCCChhHHHHHHhcc---CChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC
Q 023411           65 VISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL  141 (282)
Q Consensus        65 ~~~~~~~l~~y~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~  141 (282)
                      .+..++.+++|+.++.   ++++.++++++++.+++.+.|.+++.+++++..+++..++++||||||++|++++++++++
T Consensus         2 ~~~~~~~l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al   81 (227)
T d1susa1           2 SLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAI   81 (227)
T ss_dssp             CSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHS
T ss_pred             CccccHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhC
Confidence            3567899999998753   5789999999999988888899999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCC-CCCceeEEEEcCCccccHHHHHHHHHhhc
Q 023411          142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLLL  220 (282)
Q Consensus       142 ~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~-~~~~fDlV~id~~~~~~~~~l~~~~~~~~  220 (282)
                      +++++++++|.+++..+.|+++++.+|+.++++++.|++.+.++.+...+ ..++||+||+|+++..+..+++.+.++  
T Consensus        82 ~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~l--  159 (227)
T d1susa1          82 PEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDL--  159 (227)
T ss_dssp             CTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHH--
T ss_pred             CCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhh--
Confidence            98899999999999999999999999999999999999999999886543 246899999999999999999999999  


Q ss_pred             CCCCCcEEEEeCCCCCCcccCCcCCChh------hHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 023411          221 QIRVGGIIVIDNVLWHGKVADQMVNDAK------TISIRNFNKNLMEDERVSISMVPIGDGMTICQK  281 (282)
Q Consensus       221 ~LkpgG~lv~dd~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~lp~~~Gl~~~~k  281 (282)
                       |+|||+||+||++|+|.+.+|...+.+      ..++++|++.+.++|+++++++|+|||++||||
T Consensus       160 -l~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPigDGl~i~~K  225 (227)
T d1susa1         160 -VKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR  225 (227)
T ss_dssp             -BCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECSTTCEEEECB
T ss_pred             -cCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecCCeeEEEEE
Confidence             999999999999999999988765433      237999999999999999999999999999998

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.8e-30  Score=218.13  Aligned_cols=197  Identities=20%  Similarity=0.327  Sum_probs=168.0

Q ss_pred             hhHHHHHHhccCC---hHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCE
Q 023411           70 PPLYDYILRNVRE---PEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (282)
Q Consensus        70 ~~l~~y~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~  146 (282)
                      .++.+|+.++..+   .++++.+.+.+.+. ...|.++|++++++..+++..++++|||||||+|++|++++++++++++
T Consensus         5 ~~~~~yv~~~~~~~~p~~vl~~~~~~~~~~-~~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~   83 (214)
T d2cl5a1           5 QRILRYVQQNAKPGDPQSVLEAIDTYCTQK-EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGAR   83 (214)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHT-CCCCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCE
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhhc-CCccccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccE
Confidence            4788999998543   45788887776654 4568899999999999999999999999999999999999999987899


Q ss_pred             EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCc
Q 023411          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG  226 (282)
                      |+++|+++++++.|+++++.+|+.++|+++.||+.+.++.+......++||+||+|+++..+..++..... .++|+|||
T Consensus        84 v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~-~~lLkpGG  162 (214)
T d2cl5a1          84 LLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEK-CGLLRKGT  162 (214)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHH-TTCEEEEE
T ss_pred             EEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeecccccccccHHHHHHH-hCccCCCc
Confidence            99999999999999999999999999999999999988777655445789999999998887765443322 34499999


Q ss_pred             EEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEE-------eecCCceEEEEEC
Q 023411          227 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM-------VPIGDGMTICQKR  282 (282)
Q Consensus       227 ~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------lp~~~Gl~~~~k~  282 (282)
                      +||+||++|+|.              .+|++.+++.+++.+..       +|++||+.++..+
T Consensus       163 vIv~Ddvl~~g~--------------~~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         163 VLLADNVIVPGT--------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             EEEESCCCCCCC--------------HHHHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             EEEEeCcCCCCC--------------hHHHHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence            999999999996              56888888899988764       7889999998764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.77  E-value=1.6e-18  Score=141.48  Aligned_cols=120  Identities=20%  Similarity=0.297  Sum_probs=105.1

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      ....+...++...+...++.+|||||||+|.+++.+++.   .++|+++|+++++++.|+++++.+|+.++++++++|+.
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~   92 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh
Confidence            356666677777788889999999999999999999875   46999999999999999999999999889999999998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +.+..      ...||.||++....+...+++.+.+.   |||||.+++..+
T Consensus        93 ~~~~~------~~~~D~v~~~~~~~~~~~~~~~~~~~---LkpgG~lvi~~~  135 (186)
T d1l3ia_          93 EALCK------IPDIDIAVVGGSGGELQEILRIIKDK---LKPGGRIIVTAI  135 (186)
T ss_dssp             HHHTT------SCCEEEEEESCCTTCHHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             hcccc------cCCcCEEEEeCccccchHHHHHHHHH---hCcCCEEEEEee
Confidence            76543      47999999999888888889999888   999999998754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.7e-18  Score=147.16  Aligned_cols=125  Identities=21%  Similarity=0.209  Sum_probs=106.0

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      ...+.....+...+...++.+|||||||+|..+..+++..+  ++|+|||+|+.+++.|+++....|+.++++++++|+.
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~   93 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   93 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC--CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence            34667777788888889999999999999999999998764  7999999999999999999999999999999999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          182 DSLKALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      +..+       +++||+|++-...   .+...+++.+.++   |||||.+++.+..+...
T Consensus        94 ~~~~-------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~---LkPGG~l~i~~~~~~~~  143 (245)
T d1nkva_          94 GYVA-------NEKCDVAACVGATWIAGGFAGAEELLAQS---LKPGGIMLIGEPYWRQL  143 (245)
T ss_dssp             TCCC-------SSCEEEEEEESCGGGTSSSHHHHHHHTTS---EEEEEEEEEEEEEETTC
T ss_pred             hccc-------cCceeEEEEEehhhccCCHHHHHHHHHHH---cCcCcEEEEEeccccCC
Confidence            6532       5899999986553   3456777777777   99999999998876654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=1.1e-18  Score=151.47  Aligned_cols=158  Identities=10%  Similarity=0.096  Sum_probs=128.7

Q ss_pred             ccccccccccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEE
Q 023411           48 TNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV  126 (282)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEI  126 (282)
                      ...+++.+|||.....+.+.+++.+ .|.+.... +.+.+++.+....+              .+...+...++.+||||
T Consensus         5 ~~~~~i~~HYD~~~~fy~~~Lg~~~-~YS~g~~~~~~~tL~eAQ~~k~~--------------~~~~~l~l~~G~~VLDi   69 (285)
T d1kpga_           5 PHFANVQAHYDLSDDFFRLFLDPTQ-TYSCAYFERDDMTLQEAQIAKID--------------LALGKLGLQPGMTLLDV   69 (285)
T ss_dssp             CCHHHHHHHHTSCHHHHTTTSCTTC-CCSCCCCSSTTCCHHHHHHHHHH--------------HHHTTTTCCTTCEEEEE
T ss_pred             ccHHHHHHhcCCcHHHHHHhCCCCC-cEeeEEeCCCCCCHHHHHHHHHH--------------HHHHHcCCCCCCEEEEe
Confidence            3456788899999998899999885 77777654 44456655555433              24445567899999999


Q ss_pred             cccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC--
Q 023411          127 GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--  204 (282)
Q Consensus       127 G~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~--  204 (282)
                      |||+|..++++++..  +++|+||++|++.++.|++.++..|+.+++++..+|..+.         +++||.|+.-..  
T Consensus        70 GCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~---------~~~fD~i~si~~~e  138 (285)
T d1kpga_          70 GCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF---------DEPVDRIVSIGAFE  138 (285)
T ss_dssp             TCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC---------CCCCSEEEEESCGG
T ss_pred             cCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc---------cccccceeeehhhh
Confidence            999999999999986  4899999999999999999999999999999999998653         579999987544  


Q ss_pred             ---ccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          205 ---KRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       205 ---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                         ..++..+++.+.++   |+|||.++++++.
T Consensus       139 h~~~~~~~~~~~~~~r~---LkpgG~~~l~~i~  168 (285)
T d1kpga_         139 HFGHERYDAFFSLAHRL---LPADGVMLLHTIT  168 (285)
T ss_dssp             GTCTTTHHHHHHHHHHH---SCTTCEEEEEEEE
T ss_pred             hcCchhHHHHHHHHHhh---cCCCCcEEEEEEe
Confidence               24457889999999   9999999998875

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=2.8e-18  Score=148.81  Aligned_cols=153  Identities=8%  Similarity=0.051  Sum_probs=121.1

Q ss_pred             cccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHH
Q 023411           55 AHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYS  133 (282)
Q Consensus        55 ~~~~~~~~~~~~~~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~  133 (282)
                      +|||.....+.+.+++.+ .|.+.... +.+.|++.+....+.              +...+...++.+|||||||+|..
T Consensus         2 aHYD~~~~fy~~~ld~~m-~YS~~~~~~~~~tL~~AQ~~k~~~--------------~~~~l~l~~g~~VLDiGCG~G~~   66 (280)
T d2fk8a1           2 AHYDVSDDFFALFQDPTR-TYSCAYFEPPELTLEEAQYAKVDL--------------NLDKLDLKPGMTLLDIGCGWGTT   66 (280)
T ss_dssp             GGGCCCHHHHTTTSCTTC-CCSCCCCSSTTCCHHHHHHHHHHH--------------HHTTSCCCTTCEEEEESCTTSHH
T ss_pred             CCccCcHHHHHHhCCCCC-cEeeEEeCCCCCCHHHHHHHHHHH--------------HHHHcCCCCCCEEEEecCCchHH
Confidence            688888888888888885 77776654 334566655544322              33334567899999999999999


Q ss_pred             HHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc-----ccc
Q 023411          134 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMY  208 (282)
Q Consensus       134 t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----~~~  208 (282)
                      +.++++..+  ++|+|||+|+++++.|++.++..|+..++.+...|..+.         .++||.|++....     .++
T Consensus        67 a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---------~~~fD~i~si~~~eh~~~~~~  135 (280)
T d2fk8a1          67 MRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---------AEPVDRIVSIEAFEHFGHENY  135 (280)
T ss_dssp             HHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------CCCCSEEEEESCGGGTCGGGH
T ss_pred             HHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---------ccchhhhhHhhHHHHhhhhhH
Confidence            999998764  799999999999999999999999998899998887643         5899999876542     345


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          209 QEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       209 ~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      ..+++.+.++   |||||.++++.+...
T Consensus       136 ~~~f~~i~~~---LkpgG~~~i~~i~~~  160 (280)
T d2fk8a1         136 DDFFKRCFNI---MPADGRMTVQSSVSY  160 (280)
T ss_dssp             HHHHHHHHHH---SCTTCEEEEEEEECC
T ss_pred             HHHHHHHHhc---cCCCceEEEEEeecc
Confidence            7889999999   999999999876543

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=1.5e-18  Score=151.07  Aligned_cols=159  Identities=9%  Similarity=0.084  Sum_probs=126.5

Q ss_pred             ccccccccccccccccCCCChhHHHHHHhccC-ChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcc
Q 023411           50 CCVSSAHDEKYSNKQVISVTPPLYDYILRNVR-EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV  128 (282)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~l~~y~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~  128 (282)
                      .+++.+|||.....+.+.+++.+ .|.+.... +.+.|++.++....              .+...+...++.+||||||
T Consensus         6 ~~~i~~HYD~~~~fy~~~Lg~~~-~YS~~~~~~~~~tL~~Aq~~k~~--------------~~~~~l~l~~G~~VLDiGC   70 (291)
T d1kpia_           6 VEAVRSHYDKSNEFFKLWLDPSM-TYSCAYFERPDMTLEEAQYAKRK--------------LALDKLNLEPGMTLLDIGC   70 (291)
T ss_dssp             HHHHHHHHTSCHHHHHHHSCTTC-CCSCCCCSSTTCCHHHHHHHHHH--------------HHHHTTCCCTTCEEEEETC
T ss_pred             HhHHHHhcCCCHHHHHHhcCCCC-CeeeEEecCCCCCHHHHHHHHHH--------------HHHHhcCCCCCCEEEEecC
Confidence            35677788888777777777775 77666654 44566666655443              3445556789999999999


Q ss_pred             cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc---
Q 023411          129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---  205 (282)
Q Consensus       129 G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~---  205 (282)
                      |+|..++++++..+  ++|+|+++|++.++.+++.+...|+.+++++...|....         +++||.|+.....   
T Consensus        71 G~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~---------~~~fD~i~sie~~eH~  139 (291)
T d1kpia_          71 GWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---------DEPVDRIVSLGAFEHF  139 (291)
T ss_dssp             TTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------CCCCSEEEEESCGGGT
T ss_pred             cchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc---------ccccceEeechhHHhc
Confidence            99999999998764  899999999999999999999999999999999987532         5899999975442   


Q ss_pred             ---------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          206 ---------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       206 ---------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                               +++..+++.+.++   |||||.++++.+..+.
T Consensus       140 ~~~~~~~~~~~~~~~f~~i~~~---LkpgG~~~l~~i~~~~  177 (291)
T d1kpia_         140 ADGAGDAGFERYDTFFKKFYNL---TPDDGRMLLHTITIPD  177 (291)
T ss_dssp             TCCSSCCSTTHHHHHHHHHHHT---SCTTCEEEEEEEECCC
T ss_pred             chhhhhhHHHHHHHHHHHHHHh---CCCCCceEEEEEeccC
Confidence                     2367889999888   9999999999886543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.5e-18  Score=147.82  Aligned_cols=139  Identities=17%  Similarity=0.275  Sum_probs=110.1

Q ss_pred             CCChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCE
Q 023411           67 SVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (282)
Q Consensus        67 ~~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~  146 (282)
                      -+.|.+.+|...                 +++..-.+.|....++..++...++.+|||+|||+|+.+.+||+.+.++|+
T Consensus        63 v~~Pt~~d~~~~-----------------~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~  125 (324)
T d2b25a1          63 LRRPALEDYVVL-----------------MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGR  125 (324)
T ss_dssp             EECCCHHHHHHH-----------------SCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCE
T ss_pred             EeCCCHHHHhhc-----------------cCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcE
Confidence            345667777766                 444555789999999999999999999999999999999999999877899


Q ss_pred             EEEEecCccHHHHHHHHHHHh----------CCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHH
Q 023411          147 LVACERDARSLEVAKKYYERA----------GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (282)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~----------g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~  216 (282)
                      |+++|+++++++.|+++++..          +..++++++++|+.+....+.    ...||.||+|.+.+  ...+..+.
T Consensus       126 V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~----~~~fD~V~LD~p~P--~~~l~~~~  199 (324)
T d2b25a1         126 VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK----SLTFDAVALDMLNP--HVTLPVFY  199 (324)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----------EEEEEECSSST--TTTHHHHG
T ss_pred             EEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccccC----CCCcceEeecCcCH--HHHHHHHH
Confidence            999999999999999999875          344679999999876543332    47899999986532  23577787


Q ss_pred             HhhcCCCCCcEEEEe
Q 023411          217 QLLLQIRVGGIIVID  231 (282)
Q Consensus       217 ~~~~~LkpgG~lv~d  231 (282)
                      ++   |||||+|++-
T Consensus       200 ~~---LKpGG~lv~~  211 (324)
T d2b25a1         200 PH---LKHGGVCAVY  211 (324)
T ss_dssp             GG---EEEEEEEEEE
T ss_pred             Hh---ccCCCEEEEE
Confidence            87   9999999873

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=2.7e-17  Score=140.73  Aligned_cols=136  Identities=22%  Similarity=0.313  Sum_probs=113.8

Q ss_pred             CChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEE
Q 023411           68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCL  147 (282)
Q Consensus        68 ~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v  147 (282)
                      +.|.+.+|...                 +++..-.+.|....++...+...++.+|||+|||+|+.|.+||+.+.++|+|
T Consensus        62 ~~pt~~~~~~~-----------------~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V  124 (264)
T d1i9ga_          62 LRPLLVDYVMS-----------------MPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQV  124 (264)
T ss_dssp             ECCCHHHHHTT-----------------SCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEE
T ss_pred             eCCCHHHHHhh-----------------ccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEE
Confidence            56777788765                 4445557899999999999999999999999999999999999998778999


Q ss_pred             EEEecCccHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC
Q 023411          148 VACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG  225 (282)
Q Consensus       148 ~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg  225 (282)
                      +++|+++++++.|+++++..  +..++++++++|..+..  +    .+++||.||+|...+  ...++.+.++   ||||
T Consensus       125 ~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~--~----~~~~fDaV~ldlp~P--~~~l~~~~~~---LkpG  193 (264)
T d1i9ga_         125 ISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE--L----PDGSVDRAVLDMLAP--WEVLDAVSRL---LVAG  193 (264)
T ss_dssp             EEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC--C----CTTCEEEEEEESSCG--GGGHHHHHHH---EEEE
T ss_pred             EEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc--c----cCCCcceEEEecCCH--HHHHHHHHhc---cCCC
Confidence            99999999999999999875  34567999999987631  1    158999999986532  3567888888   9999


Q ss_pred             cEEEEe
Q 023411          226 GIIVID  231 (282)
Q Consensus       226 G~lv~d  231 (282)
                      |.+++-
T Consensus       194 G~lv~~  199 (264)
T d1i9ga_         194 GVLMVY  199 (264)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            999874

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=6.9e-18  Score=143.53  Aligned_cols=118  Identities=21%  Similarity=0.218  Sum_probs=92.1

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      .+.|....++...+...++.+|||+|||+|+.|.++++.+.++++|+++|.++++++.|+++++..+..+++++.++|..
T Consensus        68 iiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~  147 (250)
T d1yb2a1          68 IISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA  147 (250)
T ss_dssp             -------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT
T ss_pred             ccCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence            56677777788888899999999999999999999999987689999999999999999999998877778999999997


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +.++       ++.||.||+|....  ..+++.+.+.   |||||++++-
T Consensus       148 ~~~~-------~~~fD~V~ld~p~p--~~~l~~~~~~---LKpGG~lv~~  185 (250)
T d1yb2a1         148 DFIS-------DQMYDAVIADIPDP--WNHVQKIASM---MKPGSVATFY  185 (250)
T ss_dssp             TCCC-------SCCEEEEEECCSCG--GGSHHHHHHT---EEEEEEEEEE
T ss_pred             cccc-------cceeeeeeecCCch--HHHHHHHHHh---cCCCceEEEE
Confidence            7533       57899999986532  3457788888   9999999984

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=4.3e-17  Score=140.01  Aligned_cols=136  Identities=22%  Similarity=0.336  Sum_probs=115.5

Q ss_pred             CCChhHHHHHHhccCChHHHHHHHHHHHccCCCCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCE
Q 023411           67 SVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGC  146 (282)
Q Consensus        67 ~~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~  146 (282)
                      -+.|.+.+|...                 ++...-.+.|....++...+...++.+|||+|||+|+.+.++|+.+.++++
T Consensus        68 ~~~p~~~d~~~~-----------------~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~  130 (266)
T d1o54a_          68 ILIPSLIDEIMN-----------------MKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGK  130 (266)
T ss_dssp             EECCCHHHHHHT-----------------CCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCE
T ss_pred             EECCCHHHHHhh-----------------ccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcE
Confidence            356777788765                 344445788999999999999999999999999999999999999877899


Q ss_pred             EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCc
Q 023411          147 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGG  226 (282)
Q Consensus       147 v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG  226 (282)
                      |+++|+++++++.|+++++..++.+++.+..+|..+..+       ...||.||+|..  +...+++.+.++   |||||
T Consensus       131 V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~-------~~~~D~V~~d~p--~p~~~l~~~~~~---LKpGG  198 (266)
T d1o54a_         131 VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD-------EKDVDALFLDVP--DPWNYIDKCWEA---LKGGG  198 (266)
T ss_dssp             EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS-------CCSEEEEEECCS--CGGGTHHHHHHH---EEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc-------ccceeeeEecCC--CHHHHHHHHHhh---cCCCC
Confidence            999999999999999999999998889999998754322       578999999865  334568889998   99999


Q ss_pred             EEEEe
Q 023411          227 IIVID  231 (282)
Q Consensus       227 ~lv~d  231 (282)
                      .+++-
T Consensus       199 ~lv~~  203 (266)
T d1o54a_         199 RFATV  203 (266)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=4.6e-17  Score=137.08  Aligned_cols=115  Identities=15%  Similarity=0.255  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHH
Q 023411          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       107 ~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~  186 (282)
                      ...++...+..+++.+|||||||+|..+..+++..   ++|+|||+|+.+++.|+++....++. ++.++++|+.+. +.
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~-~~   78 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-PF   78 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-CS
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccc-cccccccccccc-cc
Confidence            45678888899999999999999999999999863   68999999999999999999998886 499999999764 21


Q ss_pred             HHhCCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          187 LILNGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                           .+++||+|++....+   +...+++.+.++   |||||++++.+..
T Consensus        79 -----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~---LkpgG~~~~~~~~  121 (234)
T d1xxla_          79 -----PDDSFDIITCRYAAHHFSDVRKAVREVARV---LKQDGRFLLVDHY  121 (234)
T ss_dssp             -----CTTCEEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEEC
T ss_pred             -----cccccceeeeeceeecccCHHHHHHHHHHe---eCCCcEEEEEEcC
Confidence                 158999999977643   466788888888   9999998886543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=4.9e-17  Score=135.39  Aligned_cols=116  Identities=26%  Similarity=0.377  Sum_probs=97.3

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      ..|.....+.+.+...++.+|||||||+|+++..+++.+++.++|+++|+++++++.|+++++..++.+ +.++++|..+
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~  137 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYY  137 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             ccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHH
Confidence            446666666677788899999999999999999999988778999999999999999999999988875 8889999876


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++.      .++||+|++....++.++   .+.+.   |||||.||+-
T Consensus       138 ~~~~------~~~fD~I~~~~~~~~~p~---~l~~~---LkpGG~lv~p  174 (213)
T d1dl5a1         138 GVPE------FSPYDVIFVTVGVDEVPE---TWFTQ---LKEGGRVIVP  174 (213)
T ss_dssp             CCGG------GCCEEEEEECSBBSCCCH---HHHHH---EEEEEEEEEE
T ss_pred             cccc------ccchhhhhhhccHHHhHH---HHHHh---cCCCcEEEEE
Confidence            5443      478999999988776543   45677   9999999883

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.68  E-value=5.3e-17  Score=135.92  Aligned_cols=113  Identities=16%  Similarity=0.222  Sum_probs=91.6

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +..++...++.+|||||||+|.++..+++.   +++|+|+|+|+++++.|+++++..+.. +++++++|+.+. + +   
T Consensus         7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l-~-~---   77 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-F---   77 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-S---
T ss_pred             HHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccc-c-c---
Confidence            344577788899999999999999999876   369999999999999999999998876 599999999764 2 1   


Q ss_pred             CCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          191 GEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                       ..++||+|++....+   +....+..+.++   |||||++++.+..++
T Consensus        78 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~---LkpgG~l~i~~~~~~  122 (231)
T d1vl5a_          78 -TDERFHIVTCRIAAHHFPNPASFVSEAYRV---LKKGGQLLLVDNSAP  122 (231)
T ss_dssp             -CTTCEEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEEEBC
T ss_pred             -cccccccccccccccccCCHHHHHHHHHHh---cCCCcEEEEEeCCCC
Confidence             158999999987744   455677888888   999999998665443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=1.1e-15  Score=130.12  Aligned_cols=113  Identities=16%  Similarity=0.247  Sum_probs=92.2

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH
Q 023411          107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  185 (282)
Q Consensus       107 ~~~ll~~l~~-~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~  185 (282)
                      +...+..+.. ..++++|||+|||+|..++.+++.   +++|+|+|+|+.+++.|++|.+.+++.  ++++++|..+..+
T Consensus       107 T~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~  181 (254)
T d2nxca1         107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP  181 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG
T ss_pred             hhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccccc
Confidence            3444444443 357889999999999999988763   479999999999999999999999986  5788998865433


Q ss_pred             HHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       186 ~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                             .++||+|+++...+....+++.+.++   |||||++++.+++
T Consensus       182 -------~~~fD~V~ani~~~~l~~l~~~~~~~---LkpGG~lilSgil  220 (254)
T d2nxca1         182 -------FGPFDLLVANLYAELHAALAPRYREA---LVPGGRALLTGIL  220 (254)
T ss_dssp             -------GCCEEEEEEECCHHHHHHHHHHHHHH---EEEEEEEEEEEEE
T ss_pred             -------ccccchhhhccccccHHHHHHHHHHh---cCCCcEEEEEecc
Confidence                   47999999987777777788888888   9999999997664

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=2.7e-16  Score=124.04  Aligned_cols=114  Identities=11%  Similarity=0.145  Sum_probs=94.0

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +..+.....+++|||+|||+|.+++.++.+..  .+|+++|.++++++.++++++..++.++++++++|+.+.++..   
T Consensus         6 fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga--~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~---   80 (152)
T d2esra1           6 FNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL---   80 (152)
T ss_dssp             HHHHCSCCCSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB---
T ss_pred             HHHHHhhCCCCeEEEcCCccCHHHHHHHHhCc--ceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc---
Confidence            34444445788999999999999998887532  5999999999999999999999999999999999998877654   


Q ss_pred             CCCCceeEEEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          191 GEASSYDFAFVDAEKR--MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                        .++||+||+|++..  .+...++.+.. .++|+|||+++++.
T Consensus        81 --~~~fDiIf~DPPy~~~~~~~~l~~i~~-~~~L~~~g~iiiE~  121 (152)
T d2esra1          81 --TGRFDLVFLDPPYAKETIVATIEALAA-KNLLSEQVMVVCET  121 (152)
T ss_dssp             --CSCEEEEEECCSSHHHHHHHHHHHHHH-TTCEEEEEEEEEEE
T ss_pred             --ccccceeEechhhccchHHHHHHHHHH-CCCcCCCeEEEEEe
Confidence              68999999998733  34556676665 56799999999963

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.66  E-value=1.3e-16  Score=138.09  Aligned_cols=111  Identities=14%  Similarity=0.218  Sum_probs=93.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|..+..+++..  +++|+|+|+++.+++.|+++....|+.++++++++|+.+.. .     ..++
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-~-----~~~s  135 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-C-----EDNS  135 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-S-----CTTC
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccccccc-c-----cccc
Confidence            35678899999999999999999875  47999999999999999999999999999999999997642 1     1589


Q ss_pred             eeEEEEcCCc---cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          196 YDFAFVDAEK---RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       196 fDlV~id~~~---~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      ||+|++....   .+...+++.+.++   |||||.+++.+.....
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~---LkpgG~l~~~~~~~~~  177 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARV---LKPRGVMAITDPMKED  177 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHH---EEEEEEEEEEEEEECT
T ss_pred             cchhhccchhhhccCHHHHHHHHHHh---cCCCcEEEEEEeecCC
Confidence            9999987653   3456678888888   9999999998776544

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.2e-16  Score=131.30  Aligned_cols=117  Identities=15%  Similarity=0.252  Sum_probs=93.6

Q ss_pred             ccCHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC----CcEEE
Q 023411          102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKI  175 (282)
Q Consensus       102 ~~~~~~~~ll~~l~--~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~----~~v~~  175 (282)
                      .+.|.....+.+++  ...++.+|||||||+|+.+..+++.+.+.++|+++|+++++++.|+++++..++.    +++++
T Consensus        57 is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~  136 (224)
T d1i1na_          57 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQL  136 (224)
T ss_dssp             ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEE
T ss_pred             hhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEE
Confidence            34454444444444  4578899999999999999999998776899999999999999999999987653    46899


Q ss_pred             EEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       176 ~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +++|..+..+.      .++||.|++++..++.++   .+.+.   |||||.||+
T Consensus       137 ~~gD~~~~~~~------~~~fD~I~~~~~~~~ip~---~l~~~---LkpGG~LV~  179 (224)
T d1i1na_         137 VVGDGRMGYAE------EAPYDAIHVGAAAPVVPQ---ALIDQ---LKPGGRLIL  179 (224)
T ss_dssp             EESCGGGCCGG------GCCEEEEEECSBBSSCCH---HHHHT---EEEEEEEEE
T ss_pred             EEeecccccch------hhhhhhhhhhcchhhcCH---HHHhh---cCCCcEEEE
Confidence            99998765443      479999999988766543   45667   999999998

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.63  E-value=6.6e-16  Score=126.50  Aligned_cols=109  Identities=16%  Similarity=0.241  Sum_probs=88.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHH
Q 023411          109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKAL  187 (282)
Q Consensus       109 ~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l  187 (282)
                      +++...+...++++|||+|||+|..++.++...   .+|+++|+|+.+++.++++++.+++.+ +++++.+|..+.++  
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~--  116 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--  116 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc--
Confidence            344445556678899999999999999999864   489999999999999999999998874 69999999876433  


Q ss_pred             HhCCCCCceeEEEEcCCccc----cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          188 ILNGEASSYDFAFVDAEKRM----YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~~~----~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                           +++||+|+++.+.+.    ...+++.+.++   |+|||.+++
T Consensus       117 -----~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~---LkpgG~l~i  155 (194)
T d1dusa_         117 -----DRKYNKIITNPPIRAGKEVLHRIIEEGKEL---LKDNGEIWV  155 (194)
T ss_dssp             -----TSCEEEEEECCCSTTCHHHHHHHHHHHHHH---EEEEEEEEE
T ss_pred             -----cCCceEEEEcccEEecchhhhhHHHHHHHh---cCcCcEEEE
Confidence                 579999999877433    34467777787   999998876

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=2.2e-16  Score=136.79  Aligned_cols=109  Identities=19%  Similarity=0.291  Sum_probs=89.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|||||||+|..+..++...+++++|+|+|+|+.+++.|++++...+.  +++++++|+.+..  .     .++
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~--~-----~~~   94 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE--L-----NDK   94 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC--C-----SSC
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc--c-----cCC
Confidence            356788999999999999999999888778999999999999999999987665  5999999987642  1     468


Q ss_pred             eeEEEEcCCccc---cHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          196 YDFAFVDAEKRM---YQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       196 fDlV~id~~~~~---~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      ||+|++....++   ....++.+.+.   |||||.+++.+..|.
T Consensus        95 fD~v~~~~~l~~~~d~~~~l~~~~~~---LkpgG~lii~~~~~~  135 (281)
T d2gh1a1          95 YDIAICHAFLLHMTTPETMLQKMIHS---VKKGGKIICFEPHWI  135 (281)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHT---EEEEEEEEEEECCHH
T ss_pred             ceEEEEehhhhcCCCHHHHHHHHHHH---cCcCcEEEEEECCcc
Confidence            999999877544   45567777776   999999988776543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.60  E-value=2e-15  Score=127.73  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++++|||||||+|..+..+++.   +.+|+|||+|+.|++.|+++.+..+.  +++++++|+.+...       +++||
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~-------~~~fD  107 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAF-------KNEFD  107 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCC-------CSCEE
T ss_pred             CCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhccc-------ccccc
Confidence            35678999999999999999985   46999999999999999999998776  48999999976521       47899


Q ss_pred             EEEEcCC-c-----cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          198 FAFVDAE-K-----RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       198 lV~id~~-~-----~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|++-.. .     ++....++.+.++   |||||+++++-.
T Consensus       108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~---LkpgG~lii~~~  146 (251)
T d1wzna1         108 AVTMFFSTIMYFDEEDLRKLFSKVAEA---LKPGGVFITDFP  146 (251)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             hHhhhhhhhhcCChHHHHHHHHHHHHH---cCCCcEEEEEec
Confidence            9998532 1     2344567777777   999999999643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.59  E-value=4.6e-15  Score=123.93  Aligned_cols=109  Identities=7%  Similarity=0.082  Sum_probs=90.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      .++.+|||+|||+|..+..+++... ++.+|+|+|+|++|++.|+++++..+...++.+..+|..+..        .+.+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~  109 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNA  109 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--------CCSE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--------cccc
Confidence            4677999999999999999998763 468999999999999999999998888888999998886541        4788


Q ss_pred             eEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          197 DFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       197 DlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      |+|++...     .++....++.+.+.   |+|||.+++.+...+.
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~---LkpgG~li~~~~~~~~  152 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEG---LNPNGVLVLSEKFRFE  152 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHH---EEEEEEEEEEEECCCS
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHh---CCCCceeecccccccc
Confidence            99888654     23456788888888   9999999997765433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.59  E-value=3.5e-15  Score=121.08  Aligned_cols=123  Identities=12%  Similarity=-0.011  Sum_probs=91.8

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC-----------CC
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-----------SH  171 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----------~~  171 (282)
                      +++...+++..+ ...++.+|||+|||+|..+.+||+.   +.+|+|+|+|+.+++.|++..+..+.           ..
T Consensus         5 ~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~   80 (201)
T d1pjza_           5 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   80 (201)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             HHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence            445555554443 4567889999999999999999986   68999999999999999998865432           13


Q ss_pred             cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      .++++++|..+..+..     ...||+|+......     ....+++.+.+.   |||||.+++....+..
T Consensus        81 ~~~~~~~d~~~l~~~~-----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~---LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_          81 GIEIWCGDFFALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEAL---MPQACSGLLITLEYDQ  143 (201)
T ss_dssp             SSEEEEECCSSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHH---SCSEEEEEEEEESSCS
T ss_pred             ccceeccccccccccc-----ccceeEEEEEeeeEecchhhhHHHHHHHHHh---cCCCcEEEEEEccccc
Confidence            4688999987765443     47899999865533     345677888888   9999988775544433

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.59  E-value=8.1e-15  Score=118.76  Aligned_cols=123  Identities=12%  Similarity=0.139  Sum_probs=98.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      +.....+...+.....+.+|||++||+|.+++.++.+-.  .+|++||.++++++.+++|++..+..++++++++|+.+.
T Consensus        26 ~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~  103 (182)
T d2fhpa1          26 DKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA  103 (182)
T ss_dssp             HHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh
Confidence            333444444444456788999999999999998888632  589999999999999999999999988999999999988


Q ss_pred             HHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++.+...  ..+||+||+|++.  ..+...++.+.+ ..+|+++|+++++
T Consensus       104 l~~~~~~--~~~fDlIflDPPY~~~~~~~~l~~i~~-~~~L~~~giIi~E  150 (182)
T d2fhpa1         104 LEQFYEE--KLQFDLVLLDPPYAKQEIVSQLEKMLE-RQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHT--TCCEEEEEECCCGGGCCHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred             hhhhccc--CCCcceEEechhhhhhHHHHHHHHHHH-CCCCCCCEEEEEE
Confidence            8765443  3689999999984  345667777765 4669999999986

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.1e-16  Score=129.58  Aligned_cols=110  Identities=18%  Similarity=0.194  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ++++|||||||+|.++.++++..+  .+|++||+|+.+++.|+++.+..+  .++.++.+++.+....+.    .++||.
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~fD~  124 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLP----DGHFDG  124 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSC----TTCEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccc----cccccc
Confidence            567999999999999999998643  689999999999999999887654  458888888876544332    589999


Q ss_pred             EEEcCCc-----c---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcc
Q 023411          199 AFVDAEK-----R---MYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKV  239 (282)
Q Consensus       199 V~id~~~-----~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~  239 (282)
                      |+.|...     .   +...+++.+.++   |||||++++.+..+.+..
T Consensus       125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~---LkpGG~~~~~~~~~~~~~  170 (229)
T d1zx0a1         125 ILYDTYPLSEETWHTHQFNFIKNHAFRL---LKPGGVLTYCNLTSWGEL  170 (229)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHH---EEEEEEEEECCHHHHHHH
T ss_pred             eeecccccccccccccCHHHHHHHHHHH---cCCCcEEEEEecCCcchh
Confidence            9988652     1   234577788888   999999999877655543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.58  E-value=2.6e-15  Score=127.02  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=79.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++++|||||||+|..+..+++.   +.+|+|||+|+.|++.|+++.+..+.  +++++++|+.+..  +     .++||
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~--~-----~~~fD  103 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN--I-----NRKFD  103 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC--C-----SCCEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhc--c-----ccccc
Confidence            35679999999999999999986   46899999999999999999988776  4899999997642  1     47999


Q ss_pred             EEEEcCC-------ccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAE-------KRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~-------~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++-..       ..+...+++.+.++   |+|||.++++
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~~i~~  141 (246)
T d1y8ca_         104 LITCCLDSTNYIIDSDDLKKYFKAVSNH---LKEGGVFIFD  141 (246)
T ss_dssp             EEEECTTGGGGCCSHHHHHHHHHHHHTT---EEEEEEEEEE
T ss_pred             ccceeeeeeeccCCHHHHHHHHHHHHHh---CCCCeEEEEE
Confidence            9998432       12234456666666   9999999975

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.57  E-value=5.1e-15  Score=121.30  Aligned_cols=104  Identities=14%  Similarity=0.196  Sum_probs=85.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ....+.+|||||||+|..+.++++.   +.+|+++|+|+.+++.++++.+..+++ ++++..+|..+..+       +++
T Consensus        27 ~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~-------~~~   95 (198)
T d2i6ga1          27 KVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF-------DGE   95 (198)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC-------CCC
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc-------ccc
Confidence            3446679999999999999999986   469999999999999999999998887 49999999876432       589


Q ss_pred             eeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ||+|++....++     ...+++.+.++   |+|||++++...
T Consensus        96 fD~I~~~~~~~~~~~~~~~~~l~~~~~~---L~pgG~~~~~~~  135 (198)
T d2i6ga1          96 YDFILSTVVMMFLEAQTIPGLIANMQRC---TKPGGYNLIVAA  135 (198)
T ss_dssp             EEEEEEESCGGGSCTTHHHHHHHHHHHT---EEEEEEEEEEEE
T ss_pred             ccEEEEeeeeecCCHHHHHHHHHHHHHH---cCCCcEEEEEEe
Confidence            999998766433     34577777777   999999988644

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.9e-16  Score=128.16  Aligned_cols=107  Identities=21%  Similarity=0.174  Sum_probs=85.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|||||||+|..+..++...+  .+|++||+|+++++.|++++...+.. +++++++|+.+...      ..++|
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~------~~~~f  128 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTP------EPDSY  128 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCC------CSSCE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhcccccccccccc-cccccccccccccc------ccccc
Confidence            45667999999999999998876543  68999999999999999998877765 58999999987532      15899


Q ss_pred             eEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          197 DFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       197 DlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      |+|++....++.     ..+++.+.++   |+|||.+++.+...
T Consensus       129 D~I~~~~~l~h~~~~~~~~~l~~i~~~---Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         129 DVIWIQWVIGHLTDQHLAEFLRRCKGS---LRPNGIIVIKDNMA  169 (222)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEEB
T ss_pred             cccccccccccchhhhhhhHHHHHHHh---cCCcceEEEEEccc
Confidence            999998775543     3467777777   99999998865543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=1.1e-14  Score=120.10  Aligned_cols=102  Identities=16%  Similarity=0.137  Sum_probs=86.3

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      ...|||||||+|.++..+|+..| +..++|||+++.++..+.+..+..++. ++.++++|+.+....+.    ++++|.|
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~----~~~~d~v  103 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFE----PGEVKRV  103 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCC----TTSCCEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccC----chhhhcc
Confidence            44899999999999999999987 789999999999999999999999997 49999999987654443    5789988


Q ss_pred             EEcCC---cc--c------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          200 FVDAE---KR--M------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       200 ~id~~---~~--~------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++..+   ..  +      ...+++.+.++   |||||.|.+
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~---LkpgG~l~i  142 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEV---MGKGGSIHF  142 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHH---HTTSCEEEE
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHh---CCCCcEEEE
Confidence            87543   11  1      35789999999   999999977

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=6.5e-15  Score=122.11  Aligned_cols=103  Identities=12%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+..+|||||||+|..+..+++.   +.+|+|+|+|+++++.|+++....+.  ++.++++|+.+.. .     ..++||
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~-~-----~~~~fD  104 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLS-F-----EDKTFD  104 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCC-S-----CTTCEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--ccccccccccccc-c-----cCcCce
Confidence            45679999999999999999974   57999999999999999999887764  4788899987642 1     158999


Q ss_pred             EEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +|++.....+     ...+++.+.++   |||||.++++..-
T Consensus       105 ~I~~~~~l~~~~~~d~~~~l~~i~~~---LkpgG~lii~~~~  143 (226)
T d1ve3a1         105 YVIFIDSIVHFEPLELNQVFKEVRRV---LKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHH---EEEEEEEEEEEEC
T ss_pred             EEEEecchhhCChhHHHHHHHHHHHH---cCcCcEEEEEEcC
Confidence            9998877443     34467777777   9999999887543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=1.7e-14  Score=127.22  Aligned_cols=109  Identities=23%  Similarity=0.331  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++++|||+|||+|.+++.++..-  ..+|+++|+++.+++.+++|++.+|+.++++++++|+.+.+..+...  ..+||
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~--~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK--GEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT--TCCEE
T ss_pred             CCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc--cCCCC
Confidence            467899999999999999998753  25999999999999999999999999889999999999887666543  47999


Q ss_pred             EEEEcCCcc------------ccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          198 FAFVDAEKR------------MYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       198 lV~id~~~~------------~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|++|++..            .+...+..+.++   |+|||+|++...
T Consensus       220 ~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~l---l~pGG~lv~~s~  264 (324)
T d2as0a2         220 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL---VKDGGILVTCSC  264 (324)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTT---EEEEEEEEEEEC
T ss_pred             chhcCCccccCCHHHHHHHHHHHHHHHHHHHHH---cCCCcEEEEEeC
Confidence            999998721            244455555666   999999998654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.56  E-value=4e-15  Score=126.53  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=83.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++++|||+|||+|..+..+++.-  .++|+|||+|+++++.|+++++..+...++.++++|+.......     .++||
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~-----~~~fD   95 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDL-----GKEFD   95 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCC-----SSCEE
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccc-----cccce
Confidence            467899999999999999998863  36899999999999999999998887778999999985432111     57899


Q ss_pred             EEEEcCCccc-------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          198 FAFVDAEKRM-------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       198 lV~id~~~~~-------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +|++....++       ...+++.+.++   |+|||+++++
T Consensus        96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~---Lk~gG~~i~~  133 (252)
T d1ri5a_          96 VISSQFSFHYAFSTSESLDIAQRNIARH---LRPGGYFIMT  133 (252)
T ss_dssp             EEEEESCGGGGGSSHHHHHHHHHHHHHT---EEEEEEEEEE
T ss_pred             EEEEcceeeecCCCHHHHHHHHHHHhce---eCCCCEEEEE
Confidence            9998766443       23566777777   9999999984

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.55  E-value=6.8e-15  Score=122.10  Aligned_cols=116  Identities=24%  Similarity=0.401  Sum_probs=97.2

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      ...+.|.....+.+.+...++.+|||||||+||.+..+++..  +++|+++|.+++..+.++++++..+..+ ++++++|
T Consensus        59 ~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~n-v~~~~gd  135 (215)
T d1jg1a_          59 QTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGD  135 (215)
T ss_dssp             CEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESC
T ss_pred             hhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCce-eEEEECc
Confidence            345677776777788889999999999999999999999865  3789999999999999999999999874 9999999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..+..+.      .++||.|++.+.....+.   .+.+.   |+|||.||+
T Consensus       136 ~~~g~~~------~~pfD~Iiv~~a~~~ip~---~l~~q---L~~gGrLv~  174 (215)
T d1jg1a_         136 GSKGFPP------KAPYDVIIVTAGAPKIPE---PLIEQ---LKIGGKLII  174 (215)
T ss_dssp             GGGCCGG------GCCEEEEEECSBBSSCCH---HHHHT---EEEEEEEEE
T ss_pred             cccCCcc------cCcceeEEeecccccCCH---HHHHh---cCCCCEEEE
Confidence            9875443      489999999888666544   34556   999999998

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=2.6e-14  Score=114.60  Aligned_cols=107  Identities=19%  Similarity=0.182  Sum_probs=80.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||+|||+|..++.++..   +++++++|.++++++.+++|++.+++.+++....+|.  .++.....  ..+||
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~--~~~~~~~~--~~~fD  112 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV--FLPEAKAQ--GERFT  112 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH--HHHHHHHT--TCCEE
T ss_pred             cCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhc--cccccccc--CCccc
Confidence            46789999999999999987774   5789999999999999999999999987655544443  33322211  47899


Q ss_pred             EEEEcCCcc-ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          198 FAFVDAEKR-MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       198 lV~id~~~~-~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +||+|++.. .....+..+.. .++|+|||+++++.
T Consensus       113 ~If~DPPY~~~~~~~l~~l~~-~~ll~~~g~ivie~  147 (171)
T d1ws6a1         113 VAFMAPPYAMDLAALFGELLA-SGLVEAGGLYVLQH  147 (171)
T ss_dssp             EEEECCCTTSCTTHHHHHHHH-HTCEEEEEEEEEEE
T ss_pred             eeEEccccccCHHHHHHHHHH-cCCcCCCeEEEEEe
Confidence            999998732 33344555544 35699999999863

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.53  E-value=1.2e-14  Score=121.27  Aligned_cols=111  Identities=18%  Similarity=0.255  Sum_probs=89.9

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      ...|.....+.+.+...++.+|||||||+|+.|..+++..   ++|+++|++++..+.|++++..  . ++++++++|..
T Consensus        53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~-~nv~~~~~d~~  126 (224)
T d1vbfa_          53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--Y-NNIKLILGDGT  126 (224)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--C-SSEEEEESCGG
T ss_pred             eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--c-cccccccCchh
Confidence            4556665666677788899999999999999999999864   6999999999999999988764  2 46999999987


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ...+.      .++||.|++.+..++.++   .+.+.   |+|||.||+
T Consensus       127 ~g~~~------~~pfD~Iiv~~a~~~ip~---~l~~q---Lk~GGrLV~  163 (224)
T d1vbfa_         127 LGYEE------EKPYDRVVVWATAPTLLC---KPYEQ---LKEGGIMIL  163 (224)
T ss_dssp             GCCGG------GCCEEEEEESSBBSSCCH---HHHHT---EEEEEEEEE
T ss_pred             hcchh------hhhHHHHHhhcchhhhhH---HHHHh---cCCCCEEEE
Confidence            64332      478999999988666543   45566   999999988

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=6.7e-14  Score=122.91  Aligned_cols=110  Identities=25%  Similarity=0.365  Sum_probs=89.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ....++++|||++||+|.+++.++..   ..+|+++|+|+.+++.++++++.+|+. +++++++|+.+.+..+...  .+
T Consensus       141 ~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~--~~  214 (318)
T d1wxxa2         141 MERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE--GE  214 (318)
T ss_dssp             GGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT--TC
T ss_pred             HHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhh--hc
Confidence            34457789999999999999998864   469999999999999999999999996 4999999999887766543  47


Q ss_pred             ceeEEEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +||+|++|.+.            ..+...+..+.++   |+|||+|++...
T Consensus       215 ~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~l---LkpGG~Lv~~sc  262 (318)
T d1wxxa2         215 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKL---LKEGGILATASC  262 (318)
T ss_dssp             CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             CCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHH---cCCCCEEEEEeC
Confidence            99999999762            1133455556666   999999998654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.51  E-value=3.9e-14  Score=120.46  Aligned_cols=110  Identities=19%  Similarity=0.190  Sum_probs=89.8

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ......+.++|||||||+|..+..+++..| +.+++++|+ +++++.+++++...++.++++++.+|+.+..        
T Consensus        74 ~~~d~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~--------  143 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--------  143 (253)
T ss_dssp             HHSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------
T ss_pred             hhcCCccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc--------
Confidence            333456778999999999999999999987 789999998 7899999999999999999999999986532        


Q ss_pred             CCceeEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          193 ASSYDFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      ..+||+|++....+++     ...++.+.+.   |||||.|++.+...
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~---LkPGG~l~i~e~~~  188 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEA---LEPGGRILIHERDD  188 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHT---EEEEEEEEEEECCB
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHh---cCCCcEEEEEeccC
Confidence            3679999988775543     2446666666   99999988876543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.51  E-value=1.3e-14  Score=121.17  Aligned_cols=104  Identities=11%  Similarity=0.144  Sum_probs=80.6

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       111 l~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      +..+....++++|||||||+|..+..+++.   +.+|+|||+|+++++.|+++..     ++++++++++.+...     
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~-----   78 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL-----   78 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC-----
T ss_pred             HHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc-----
Confidence            344555667889999999999999998875   3579999999999999987642     359999999876422     


Q ss_pred             CCCCceeEEEEcCCcccc---HHHHHHHH-HhhcCCCCCcEEEEeC
Q 023411          191 GEASSYDFAFVDAEKRMY---QEYFELLL-QLLLQIRVGGIIVIDN  232 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~---~~~l~~~~-~~~~~LkpgG~lv~dd  232 (282)
                        +++||+|++....++.   ...+..+. ++   |+|||.+++.-
T Consensus        79 --~~~fD~I~~~~vleh~~d~~~~l~~i~~~~---Lk~gG~l~i~~  119 (225)
T d2p7ia1          79 --PRRYDNIVLTHVLEHIDDPVALLKRINDDW---LAEGGRLFLVC  119 (225)
T ss_dssp             --SSCEEEEEEESCGGGCSSHHHHHHHHHHTT---EEEEEEEEEEE
T ss_pred             --ccccccccccceeEecCCHHHHHHHHHHHh---cCCCceEEEEe
Confidence              5799999998876554   34444444 44   99999999863

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=5.5e-14  Score=113.91  Aligned_cols=115  Identities=16%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH
Q 023411          108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  187 (282)
Q Consensus       108 ~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l  187 (282)
                      ..+...+.....+.+|||++||+|..++.++++-.  .+|++||.++.+++.+++|++..+.. +++++.+|+.+.+...
T Consensus        32 e~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa--~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~~  108 (183)
T d2fpoa1          32 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQK  108 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSC
T ss_pred             HHHHhhhhcccchhhhhhhhccccceeeeEEecCc--ceeEEEEEeechhhHHHHHHhhcccc-ceeeeeeccccccccc
Confidence            34444444456778999999999999998887532  58999999999999999999988775 4899999988766432


Q ss_pred             HhCCCCCceeEEEEcCCcc--ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          188 ILNGEASSYDFAFVDAEKR--MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       188 ~~~~~~~~fDlV~id~~~~--~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                           ..+||+||+|++..  .+...++.+.+ .++|+++|+++++
T Consensus       109 -----~~~fDlIf~DPPY~~~~~~~~l~~l~~-~~~L~~~~iIiiE  148 (183)
T d2fpoa1         109 -----GTPHNIVFVDPPFRRGLLEETINLLED-NGWLADEALIYVE  148 (183)
T ss_dssp             -----CCCEEEEEECCSSSTTTHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred             -----ccccCEEEEcCccccchHHHHHHHHHH-CCCCCCCeEEEEE
Confidence                 57999999999844  35566777766 5679999999996

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=1e-14  Score=121.79  Aligned_cols=117  Identities=16%  Similarity=0.229  Sum_probs=89.3

Q ss_pred             ccCHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHHHCCC-----CCEEEEEecCccHHHHHHHHHHHhCCC----
Q 023411          102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGVS----  170 (282)
Q Consensus       102 ~~~~~~~~ll~~l~--~~~~~~~VLEIG~G~G~~t~~la~~~~~-----~~~v~~iD~s~~~~~~a~~~~~~~g~~----  170 (282)
                      .+.|.....+.++.  ...++.+|||||||+||.|..+++.+.+     +.+|+++|++++.++.|++++...+..    
T Consensus        61 is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~  140 (223)
T d1r18a_          61 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS  140 (223)
T ss_dssp             ECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc
Confidence            34454444444443  5678899999999999999999887532     358999999999999999987654321    


Q ss_pred             CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       171 ~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .++.++++|..+..+.      .++||.|++.+..+..+.   .+.+.   |+|||.+|+
T Consensus       141 ~nv~~~~~d~~~~~~~------~~~fD~Iiv~~a~~~~p~---~l~~~---Lk~gG~lV~  188 (223)
T d1r18a_         141 GQLLIVEGDGRKGYPP------NAPYNAIHVGAAAPDTPT---ELINQ---LASGGRLIV  188 (223)
T ss_dssp             TSEEEEESCGGGCCGG------GCSEEEEEECSCBSSCCH---HHHHT---EEEEEEEEE
T ss_pred             cEEEEEeccccccccc------ccceeeEEEEeechhchH---HHHHh---cCCCcEEEE
Confidence            3599999999765443      479999999998776554   35566   999999987

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-13  Score=114.80  Aligned_cols=126  Identities=9%  Similarity=-0.063  Sum_probs=97.4

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC------------
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------------  168 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g------------  168 (282)
                      -...+...+++..+....++.+|||+|||+|..+.+|++.   +.+|+|||+|+.+++.+++.....+            
T Consensus        27 ~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~  103 (229)
T d2bzga1          27 EQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTK  103 (229)
T ss_dssp             TTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCE
T ss_pred             CCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccc
Confidence            3456767777777777788899999999999999999984   5799999999999999988765321            


Q ss_pred             ----CCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          169 ----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       169 ----~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                          ...+++++++|..+..+..     .+.||+|+....     ......+++.+.++   |||||.+++....++.
T Consensus       104 ~~~~~~~~v~~~~~d~~~l~~~~-----~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~---LkpgG~~~l~~~~~~~  173 (229)
T d2bzga1         104 VFKSSSGNISLYCCSIFDLPRTN-----IGKFDMIWDRGALVAINPGDRKCYADTMFSL---LGKKFQYLLCVLSYDP  173 (229)
T ss_dssp             EEEETTSSEEEEESCGGGGGGSC-----CCCEEEEEESSSTTTSCGGGHHHHHHHHHHT---EEEEEEEEEEEEECCT
T ss_pred             eeeecCCcEEEEEcchhhccccc-----cCceeEEEEEEEEEeccchhhHHHHHHHHhh---cCCcceEEEEEcccCC
Confidence                1246899999997764432     579999987544     34556788888888   9999987776554443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=7.5e-14  Score=119.75  Aligned_cols=120  Identities=16%  Similarity=0.231  Sum_probs=95.4

Q ss_pred             CCccCHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEE
Q 023411          100 QMQVSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  177 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~  177 (282)
                      .....|++..++......  ..+.+|||+|||+|..++.++...| +.+|+++|+|+.+++.|++|++.+++. ++++++
T Consensus        87 VlIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~  164 (274)
T d2b3ta1          87 TLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQ  164 (274)
T ss_dssp             SCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEEC
T ss_pred             ccccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcc-cceeee
Confidence            345567777777665543  3456899999999999999999987 789999999999999999999999985 599999


Q ss_pred             cchhhHHHHHHhCCCCCceeEEEEcCCcc----------------------------ccHHHHHHHHHhhcCCCCCcEEE
Q 023411          178 GLAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       178 gd~~~~l~~l~~~~~~~~fDlV~id~~~~----------------------------~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      +|..+.++       ..+||+|+++++.-                            .+..+++.+.++   |+|||.++
T Consensus       165 ~d~~~~~~-------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~---L~~~G~l~  234 (274)
T d2b3ta1         165 SDWFSALA-------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA---LVSGGFLL  234 (274)
T ss_dssp             CSTTGGGT-------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG---EEEEEEEE
T ss_pred             cccccccC-------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHh---cCCCCEEE
Confidence            99887543       46999999986510                            123345555555   99999999


Q ss_pred             Ee
Q 023411          230 ID  231 (282)
Q Consensus       230 ~d  231 (282)
                      +.
T Consensus       235 lE  236 (274)
T d2b3ta1         235 LE  236 (274)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.48  E-value=1.3e-13  Score=113.38  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=85.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ....|||||||+|.++..+|+..| +..++|+|+++.++..|.+.+...++++ +.++++|+.+....+.    .+++|.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~----~~~~~~  104 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFE----DGEIDR  104 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSC----TTCCSE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhcc----CCceeh
Confidence            344899999999999999999987 7899999999999999999999999975 9999999977543332    578898


Q ss_pred             EEEc---CCcc--c------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVD---AEKR--M------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id---~~~~--~------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |++.   .+..  +      ...+++.+.++   |+|||.|.+
T Consensus       105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~---LkpgG~l~i  144 (204)
T d1yzha1         105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRI---LPENGEIHF  144 (204)
T ss_dssp             EEEESCCCCCSGGGGGGSTTSHHHHHHHHHH---SCTTCEEEE
T ss_pred             hcccccccccchhhhhhhhhHHHHHHHHHHh---CCCCcEEEE
Confidence            8774   3321  1      36789999999   999999976

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.48  E-value=1.6e-13  Score=120.36  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=90.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ..++++|||++||+|.+++.++..-  ..+|++||+++.+++.+++|++.+++. .+++++++|+.+.++.....  ..+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~--~~~  217 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH--HLT  217 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT--TCC
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh--cCC
Confidence            4568899999999999999888642  258999999999999999999999985 57999999999988876554  378


Q ss_pred             eeEEEEcCCc------------cccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAEK------------RMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~~------------~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ||+|++|++.            ..+...+..+.++   |+|||+|++...
T Consensus       218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~l---l~pgG~l~~~sc  264 (317)
T d2b78a2         218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEI---LSENGLIIASTN  264 (317)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHT---EEEEEEEEEEEC
T ss_pred             CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHH---cCCCCEEEEEeC
Confidence            9999999772            1245566666777   999999998544

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.48  E-value=2.3e-14  Score=122.14  Aligned_cols=105  Identities=16%  Similarity=0.126  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+..+|||+|||+|..+..++....  .+|++||+++.+++.|++++..   ...++++++|+.+...      ..++||
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~---~~~~~~~~~d~~~~~~------~~~~fD  160 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG---MPVGKFILASMETATL------PPNTYD  160 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT---SSEEEEEESCGGGCCC------CSSCEE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc---cccceeEEcccccccc------CCCccc
Confidence            4667999999999999998876543  5899999999999999987653   2358999999876522      157999


Q ss_pred             EEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          198 FAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       198 lV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      +|++....++.     ..+++.+.+.   |+|||++++.+....
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~---LkpgG~iii~e~~~~  201 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQA---LTPNGYIFFKENCST  201 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEBC-
T ss_pred             eEEeeccccccchhhhHHHHHHHHHh---cCCCcEEEEEecCCC
Confidence            99998775543     3567777777   999999998765544

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.47  E-value=7.6e-14  Score=115.39  Aligned_cols=106  Identities=16%  Similarity=0.150  Sum_probs=84.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|+.+..+++.++ +++|+|+|+++.+++.+++..+..+   ++.++.+|+.+.. .. .. ....+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~-~~-~~-~~~~v  126 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPW-KY-SG-IVEKV  126 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGG-GT-TT-TCCCE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcc-cc-cc-ccceE
Confidence            45788999999999999999999987 6799999999999999999888643   5999999986531 11 11 14678


Q ss_pred             eEEEEcCC-ccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          197 DFAFVDAE-KRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       197 DlV~id~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |+||.+.. ......++..+.+.   |||||.+++..
T Consensus       127 d~v~~~~~~~~~~~~~l~~~~~~---LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDIAQKNQIEILKANAEFF---LKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             EEEEecccChhhHHHHHHHHHHH---hccCCeEEEEE
Confidence            88888754 34455678888888   99999998853

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=7.2e-14  Score=119.24  Aligned_cols=104  Identities=17%  Similarity=0.130  Sum_probs=88.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|.+++.+|+..  .++|+++|++|.+++.+++|++.+++.++++++++|+.+..+       .+.|
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-------~~~~  175 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-------ENIA  175 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-------CSCE
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-------CCCC
Confidence            3578899999999999999999863  479999999999999999999999999999999999987543       5789


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |.|+++.+.. ...+++.+.++   |++||+|.+++.
T Consensus       176 D~Ii~~~p~~-~~~~l~~a~~~---l~~gG~lh~~~~  208 (260)
T d2frna1         176 DRILMGYVVR-THEFIPKALSI---AKDGAIIHYHNT  208 (260)
T ss_dssp             EEEEECCCSS-GGGGHHHHHHH---EEEEEEEEEEEE
T ss_pred             CEEEECCCCc-hHHHHHHHHhh---cCCCCEEEEEec
Confidence            9999986643 34567778888   999999977654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.47  E-value=2.4e-13  Score=118.15  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=87.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ...++.+|||++||+|.+++.++..   +++|++||.|+.+++.|++|++.+++.+ +++++++|+.+.+......  ..
T Consensus       129 ~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~--~~  203 (309)
T d2igta1         129 TADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR--GS  203 (309)
T ss_dssp             HSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH--TC
T ss_pred             hccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc--CC
Confidence            3456889999999999999999874   5799999999999999999999999875 6999999999988765443  37


Q ss_pred             ceeEEEEcCCc---------c----ccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEK---------R----MYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~---------~----~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +||+|++|++.         .    ++...+..+..+   |+|||.+++-+.
T Consensus       204 ~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~l---l~~~g~~ll~t~  252 (309)
T d2igta1         204 TYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREI---LSPKALGLVLTA  252 (309)
T ss_dssp             CBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHT---BCTTCCEEEEEE
T ss_pred             CCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHh---cCCCCCEEEEec
Confidence            99999999771         1    123344455666   999987655443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2e-13  Score=118.23  Aligned_cols=117  Identities=18%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC---CcEEEEEcchhhH
Q 023411          107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADS  183 (282)
Q Consensus       107 ~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~---~~v~~~~gd~~~~  183 (282)
                      ...++..+....++++|||+|||+|..+..+++.   +.+|+|+|+|++|++.|+++....+..   .+..+..++....
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  120 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence            3455666666677889999999999999999985   469999999999999999998876654   2345666666543


Q ss_pred             HHHHHhCCCCCceeEEEEcCC-c----------cccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          184 LKALILNGEASSYDFAFVDAE-K----------RMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~-~----------~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ...++   ..++||+|++-.. .          .+....++.+.++   |||||+++++-
T Consensus       121 ~~~~~---~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---LkpgG~li~~~  174 (292)
T d1xvaa_         121 DKDVP---AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASM---VRPGGLLVIDH  174 (292)
T ss_dssp             HHHSC---CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHT---EEEEEEEEEEE
T ss_pred             ccccC---CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHH---cCcCcEEEEee
Confidence            32221   1478999987432 1          1234567777777   99999999963

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=3.8e-14  Score=118.92  Aligned_cols=97  Identities=16%  Similarity=0.167  Sum_probs=75.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..+++.   +.+|+|+|+|+.+++.|+++.    ..   .++.+++.+. +.     .+++||
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~~---~~~~~~~~~l-~~-----~~~~fD  104 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----VK---NVVEAKAEDL-PF-----PSGAFE  104 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----CS---CEEECCTTSC-CS-----CTTCEE
T ss_pred             CCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----cc---cccccccccc-cc-----cccccc
Confidence            35679999999999999999874   579999999999999998753    22   3567888664 21     158999


Q ss_pred             EEEEcCC----ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          198 FAFVDAE----KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       198 lV~id~~----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|++...    ..+....++.+.++   |||||+++++-.
T Consensus       105 ~ii~~~~~~~~~~d~~~~l~~i~r~---Lk~gG~~ii~~~  141 (246)
T d2avna1         105 AVLALGDVLSYVENKDKAFSEIRRV---LVPDGLLIATVD  141 (246)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             ceeeecchhhhhhhHHHHHHHHHhh---cCcCcEEEEEEC
Confidence            9997543    33556678888888   999999999643

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.42  E-value=3e-13  Score=115.19  Aligned_cols=106  Identities=19%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...+.++|||||||+|..+..+++..| +.+++++|+ |++++.++++++..++.++++++.+|..+..        ..+
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~--------p~~  147 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL--------PVT  147 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--------SCC
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc--------ccc
Confidence            345678999999999999999999997 789999998 7899999999999999999999999987532        357


Q ss_pred             eeEEEEcCCcccc-----HHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          196 YDFAFVDAEKRMY-----QEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       196 fDlV~id~~~~~~-----~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ||+|++....+++     ...++.+.+.   |||||.+++.+..
T Consensus       148 ~D~v~~~~vLh~~~d~~~~~lL~~i~~~---LkpgG~llI~d~~  188 (256)
T d1qzza2         148 ADVVLLSFVLLNWSDEDALTILRGCVRA---LEPGGRLLVLDRA  188 (256)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEECC
T ss_pred             chhhhccccccccCcHHHHHHHHHHHhh---cCCcceeEEEEec
Confidence            9999987665443     4567777777   9999988776654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=2.5e-13  Score=113.55  Aligned_cols=106  Identities=15%  Similarity=0.145  Sum_probs=84.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|..+..+++.++++|+|+|+|+++.+++.++++.+..   ..+..+.+|+..... .. . ....+
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~-~~-~-~~~~v  144 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEE-YR-A-LVPKV  144 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGG-GT-T-TCCCE
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCccc-cc-c-cccce
Confidence            467889999999999999999999877899999999999999999887643   347778888754211 10 0 14789


Q ss_pred             eEEEEcCCcc-ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKR-MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~-~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+||+|.... ....+++.+.+.   |||||.+++.
T Consensus       145 D~i~~d~~~~~~~~~~l~~~~~~---LkpgG~lvi~  177 (227)
T d1g8aa_         145 DVIFEDVAQPTQAKILIDNAEVY---LKRGGYGMIA  177 (227)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEEEEccccchHHHHHHHHHHh---cccCCeEEEE
Confidence            9999987644 445578888888   9999998874

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.1e-13  Score=118.76  Aligned_cols=95  Identities=19%  Similarity=0.194  Sum_probs=78.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .++.+|||||||+|..+..+++..+ +.+++|+|+|+.+++.|++..      .+++++++|+.+. +.     .+++||
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l-~~-----~~~sfD  149 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-PF-----SDTSMD  149 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-SB-----CTTCEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhc-cC-----CCCCEE
Confidence            3677999999999999999999876 789999999999999988753      2589999999764 21     158999


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +|++.....+    ++++.++   |||||++++..
T Consensus       150 ~v~~~~~~~~----~~e~~rv---LkpgG~l~~~~  177 (268)
T d1p91a_         150 AIIRIYAPCK----AEELARV---VKPGGWVITAT  177 (268)
T ss_dssp             EEEEESCCCC----HHHHHHH---EEEEEEEEEEE
T ss_pred             EEeecCCHHH----HHHHHHH---hCCCcEEEEEe
Confidence            9998776655    4567888   99999999864

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.39  E-value=3.7e-13  Score=112.72  Aligned_cols=107  Identities=15%  Similarity=0.119  Sum_probs=80.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++.+|||+|||+|..+..+++..+ ++.|+|+|+|+.+++.+++....   .+++..+.+|........  . ....+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~---~~ni~~i~~d~~~~~~~~--~-~~~~v  144 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE---RENIIPILGDANKPQEYA--N-IVEKV  144 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT---CTTEEEEECCTTCGGGGT--T-TCCCE
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhh---hcccceEEEeeccCcccc--c-cccee
Confidence            46788999999999999999999876 78999999999999999887653   345888888886543221  0 02345


Q ss_pred             eEEEEcCC-ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          197 DFAFVDAE-KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       197 DlV~id~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      |+++.+.. ..+...++..+.+.   |||||.+++..-
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~---LKpgG~~~i~~k  179 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWF---LKKGGYGMIAIK  179 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHH---EEEEEEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHHHh---cccCceEEEEee
Confidence            55665544 33455568888888   999999888543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.9e-13  Score=116.37  Aligned_cols=113  Identities=12%  Similarity=0.098  Sum_probs=80.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHC----C-CCCEEEEEecCccHHHHHHHHHHHhCCCCcE--EEEEcchhhHHHHHHh
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVL----P-ESGCLVACERDARSLEVAKKYYERAGVSHKV--KIKHGLAADSLKALIL  189 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~----~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v--~~~~gd~~~~l~~l~~  189 (282)
                      ..+..+|||||||+|..+..++..+    + ...++++||+|+.+++.+++.+........+  .+...++.+.......
T Consensus        38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            3344589999999999999887654    2 1247899999999999999998754433334  4556666554444333


Q ss_pred             CCCCCceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          190 NGEASSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ....++||+|++....+   +....++.+.++   |+|||++++..
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~---LkpgG~l~i~~  160 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSL---LGTNAKMLIIV  160 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHT---EEEEEEEEEEE
T ss_pred             cCCCCceeEEEEccceecCCCHHHHHHHHHhh---CCCCCEEEEEE
Confidence            33468999999977643   345667777777   99999988853

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=4.6e-13  Score=109.88  Aligned_cols=99  Identities=22%  Similarity=0.308  Sum_probs=76.1

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +....+..+|||||||+|.++..+.       +++|||+|+.+++.++++        +++++++|+.+...      .+
T Consensus        31 ~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~------~~   89 (208)
T d1vlma_          31 VKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPL------KD   89 (208)
T ss_dssp             HHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCS------CT
T ss_pred             HHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------cccccccccccccc------cc
Confidence            3444566789999999999877663       368999999999998863        48999999976421      15


Q ss_pred             CceeEEEEcCCcc---ccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          194 SSYDFAFVDAEKR---MYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       194 ~~fDlV~id~~~~---~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      ++||+|++....+   +...+++.+.++   |+|||.+++......
T Consensus        90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~---L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          90 ESFDFALMVTTICFVDDPERALKEAYRI---LKKGGYLIVGIVDRE  132 (208)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHHHHH---EEEEEEEEEEEECSS
T ss_pred             ccccccccccccccccccccchhhhhhc---CCCCceEEEEecCCc
Confidence            8999999987644   355577777777   999999999876443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=3e-12  Score=112.65  Aligned_cols=107  Identities=20%  Similarity=0.230  Sum_probs=84.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ....++++|||||||+|..++.+++..  ..+|+++|.++ ++..|++..+.++..+++++++++..+...      .++
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~------~~~  104 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL------PFP  104 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------SSS
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC------ccc
Confidence            344578899999999999999888853  25899999986 778999999999999999999999876421      157


Q ss_pred             ceeEEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +||+|++...      .......+....++   |||||+++-+-+
T Consensus       105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~---LkpgG~iiP~~~  146 (328)
T d1g6q1_         105 KVDIIISEWMGYFLLYESMMDTVLYARDHY---LVEGGLIFPDKC  146 (328)
T ss_dssp             CEEEEEECCCBTTBSTTCCHHHHHHHHHHH---EEEEEEEESCEE
T ss_pred             ceeEEEEEecceeeccchhHHHHHHHHHhc---cCCCeEEEeeec
Confidence            9999998533      23345567777777   999999875443

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.4e-12  Score=111.05  Aligned_cols=125  Identities=13%  Similarity=0.079  Sum_probs=88.2

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh-------CCC-CcEE
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-------GVS-HKVK  174 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-------g~~-~~v~  174 (282)
                      ..+....-+...+...+..+|||||||+|..++.+|...+ ..+++|||+++.+++.|+++.+..       |.. .+++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~  213 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT  213 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence            3444444445555678899999999999999999998876 568999999999999998876653       332 4699


Q ss_pred             EEEcchhhHHHHHHhCCCCCceeEEEEcCCc--cccHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          175 IKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       175 ~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      ++++|+.+..-.-.    ....|+||+....  ......+..+.+.   |||||.+|+...+.
T Consensus       214 ~~~gd~~~~~~~~~----~~~advi~~~~~~f~~~~~~~l~e~~r~---LKpGg~iv~~~~~~  269 (328)
T d1nw3a_         214 LERGDFLSEEWRER----IANTSVIFVNNFAFGPEVDHQLKERFAN---MKEGGRIVSSKPFA  269 (328)
T ss_dssp             EEECCTTSHHHHHH----HHHCSEEEECCTTTCHHHHHHHHHHHTT---CCTTCEEEESSCSS
T ss_pred             EEECcccccccccc----cCcceEEEEcceecchHHHHHHHHHHHh---CCCCcEEEEecccC
Confidence            99999976421110    1245888886542  2233344555555   99999999865543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.9e-12  Score=113.40  Aligned_cols=104  Identities=16%  Similarity=0.161  Sum_probs=82.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..++++|||||||+|..++.+++..+  .+|+++|.++. ...++++++.+++.++++++++++.+...      ..++|
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga--~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~------~~~~~  101 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL------PVEKV  101 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC------SSSCE
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCC--CEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc------cccee
Confidence            45788999999999999999998532  58999999975 57888889999999999999999976421      14799


Q ss_pred             eEEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          197 DFAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       197 DlV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      |+|++...      ......++..+.++   |+|||.++-.-
T Consensus       102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~---Lkp~G~iiP~~  140 (316)
T d1oria_         102 DIIISEWMGYCLFYESMLNTVLHARDKW---LAPDGLIFPDR  140 (316)
T ss_dssp             EEEEECCCBBTBTBTCCHHHHHHHHHHH---EEEEEEEESCE
T ss_pred             EEEeeeeeeeeeccHHHHHHHHHHHHhc---CCCCeEEEeee
Confidence            99997643      12356677788888   99999987543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.32  E-value=5.6e-12  Score=101.79  Aligned_cols=127  Identities=14%  Similarity=0.144  Sum_probs=94.3

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC-cEEEEEcc
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGL  179 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~-~v~~~~gd  179 (282)
                      |..+.....+...+.....+.+|||+.||+|..++..+++-.  .+|+.||.+...+...++|++..+..+ ...++..|
T Consensus        25 Pt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA--~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d  102 (183)
T d2ifta1          25 PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  102 (183)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             cCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecc--eeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence            344455555555555556778999999999999999998642  599999999999999999999988754 56777777


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCccc--cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~--~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+.+...   ....+||+||+|++...  +...++.+.. .++|+++|+++++.-
T Consensus       103 ~~~~l~~~---~~~~~fDlIFlDPPY~~~~~~~~l~~l~~-~~~L~~~~liiiE~~  154 (183)
T d2ifta1         103 SLDFLKQP---QNQPHFDVVFLDPPFHFNLAEQAISLLCE-NNWLKPNALIYVETE  154 (183)
T ss_dssp             HHHHTTSC---CSSCCEEEEEECCCSSSCHHHHHHHHHHH-TTCEEEEEEEEEEEE
T ss_pred             cccccccc---ccCCcccEEEechhHhhhhHHHHHHHHHH-hCCcCCCcEEEEEec
Confidence            76544321   11457999999999654  4556666665 567999999999743

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.32  E-value=1.4e-12  Score=109.09  Aligned_cols=119  Identities=16%  Similarity=0.284  Sum_probs=86.6

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHC---CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      -.|....++..++...+|++|||||++.|+++++++..+   ...++++++|+++.......      ...++++++++|
T Consensus        64 k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i~gD  137 (232)
T d2bm8a1          64 KDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGD  137 (232)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECC
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeeeecc
Confidence            346777778888888899999999999999999888644   45799999999886543221      123579999999


Q ss_pred             hhh--HHHHHHhCCCCCceeEEEEcCCccccHHHHHH-HHHhhcCCCCCcEEEEeCCC
Q 023411          180 AAD--SLKALILNGEASSYDFAFVDAEKRMYQEYFEL-LLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       180 ~~~--~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~-~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ..+  .+..+    ....+|+||+|+.+.......+. +.++   |++||++|++|..
T Consensus       138 s~~~~~~~~l----~~~~~dlIfID~~H~~~~v~~~~~~~~l---Lk~GG~iIveD~i  188 (232)
T d2bm8a1         138 CSDLTTFEHL----REMAHPLIFIDNAHANTFNIMKWAVDHL---LEEGDYFIIEDMI  188 (232)
T ss_dssp             SSCSGGGGGG----SSSCSSEEEEESSCSSHHHHHHHHHHHT---CCTTCEEEECSCH
T ss_pred             cccHHHHHHH----HhcCCCEEEEcCCcchHHHHHHHHHhcc---cCcCCEEEEEcCC
Confidence            754  22222    14578999999885544333322 3456   9999999999875

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.30  E-value=2.2e-11  Score=103.94  Aligned_cols=123  Identities=18%  Similarity=0.321  Sum_probs=94.4

Q ss_pred             CCccCHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE
Q 023411          100 QMQVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  176 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~---~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~  176 (282)
                      .....|++..++.....   ..+..+|+|+|||+|..++.+++. + +++|+++|+|+++++.|++|++.+++.+++.+.
T Consensus        88 vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~  165 (271)
T d1nv8a_          88 VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVR  165 (271)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             ccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence            34556667666665543   345679999999999999998864 4 789999999999999999999999999999999


Q ss_pred             EcchhhHHHHHHhCCCCCceeEEEEcCCc-----------------------cccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          177 HGLAADSLKALILNGEASSYDFAFVDAEK-----------------------RMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       177 ~gd~~~~l~~l~~~~~~~~fDlV~id~~~-----------------------~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .++..+..+..     .++||+|+++++.                       ....-+.+.+.++   |+|||++++.-
T Consensus       166 ~~~~~~~~~~~-----~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~---L~~~G~l~~Ei  236 (271)
T d1nv8a_         166 KGEFLEPFKEK-----FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRY---DTSGKIVLMEI  236 (271)
T ss_dssp             ESSTTGGGGGG-----TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHC---CCTTCEEEEEC
T ss_pred             ecccccccccc-----cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHh---cCCCCEEEEEE
Confidence            99998765443     4799999998651                       0012233334455   99999999964

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.1e-12  Score=110.31  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=80.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++++|||||||+|..++.+|++.+  .+|+++|.++.+. .+++....++..++++++++++.+...      ...+
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~------~~~~  102 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL------PVEK  102 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC------SCSC
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC------cccc
Confidence            445788999999999999999998632  5899999998765 577778888888999999999976421      1479


Q ss_pred             eeEEEEcCCc------cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          196 YDFAFVDAEK------RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       196 fDlV~id~~~------~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ||+|++....      ......+....++   |+|||+++.+
T Consensus       103 ~D~Ivse~~~~~~~~e~~~~~~~~a~~~~---Lkp~G~iip~  141 (311)
T d2fyta1         103 VDVIISEWMGYFLLFESMLDSVLYAKNKY---LAKGGSVYPD  141 (311)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHH---EEEEEEEESC
T ss_pred             ceEEEEeeeeeecccccccHHHHHHHHhc---CCCCcEEecc
Confidence            9999985431      1234455656677   9999999854

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=1.5e-11  Score=106.14  Aligned_cols=106  Identities=14%  Similarity=0.287  Sum_probs=87.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...+++||-||.|.|..+..++++.+ ..+|+.||+++++++.+++.+....   -++|++++.+|+.+.+...     .
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~  160 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----K  160 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----S
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-----C
Confidence            35688999999999999999988654 5799999999999999999876532   2468999999999877643     5


Q ss_pred             CceeEEEEcCCcc--------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKR--------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~--------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++||+|++|....        ...++++.+.+.   |+|||++++.
T Consensus       161 ~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~---L~~~Gi~v~q  203 (295)
T d1inla_         161 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDA---LKEDGVFSAE  203 (295)
T ss_dssp             SCEEEEEEEC----------CCSHHHHHHHHHH---EEEEEEEEEE
T ss_pred             CCCCEEEEcCCCCCcCchhhhccHHHHHHHHhh---cCCCcEEEEe
Confidence            7899999986421        246789999999   9999999986

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=3e-11  Score=98.01  Aligned_cols=110  Identities=18%  Similarity=0.184  Sum_probs=86.0

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ++...++..+||++||+|..+..+++.+| +++|+|+|.++++++.++++++..+  +++.++++++.+....+...+ .
T Consensus        18 ~l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~~-~   93 (192)
T d1m6ya2          18 FLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG-I   93 (192)
T ss_dssp             HHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT-C
T ss_pred             hhCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHcC-C
Confidence            33556788999999999999999999997 7999999999999999999988654  579999999876543333222 5


Q ss_pred             CceeEEEEcCCcc---------c---cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          194 SSYDFAFVDAEKR---------M---YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       194 ~~fDlV~id~~~~---------~---~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ++||.|+.|.+..         .   ....+..+.++   |+|||.+++
T Consensus        94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~---Lk~gG~l~i  139 (192)
T d1m6ya2          94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDL---LNPGGRIVV  139 (192)
T ss_dssp             SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGG---EEEEEEEEE
T ss_pred             CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHh---cCCCCeeee
Confidence            8999999996632         1   22344444555   999999987

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-12  Score=110.19  Aligned_cols=112  Identities=13%  Similarity=0.043  Sum_probs=73.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEE------------------------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK------------------------  174 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~------------------------  174 (282)
                      ++.+|||||||+|..+..++...  ..+|+|+|+|+.+++.|+++++..+......                        
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            56799999999999887776542  2479999999999999999988654331100                        


Q ss_pred             -----EEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          175 -----IKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       175 -----~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                           ....+....  ........++||+|++....+       .+..+++.+.++   |||||++++.++...+
T Consensus       129 ~~~~~~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~---LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         129 AAVKRVLKCDVHLG--NPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASL---LKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             HHEEEEEECCTTSS--STTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTT---EEEEEEEEEEEESSCC
T ss_pred             hhhhcccccccccc--cccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhc---cCCCcEEEEEEecccc
Confidence                 000000000  000011257899999865533       334456666666   9999999998876443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.25  E-value=8.4e-11  Score=100.73  Aligned_cols=105  Identities=17%  Similarity=0.250  Sum_probs=85.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh---------CCCCcEEEEEcchhhHHHH
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---------GVSHKVKIKHGLAADSLKA  186 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------g~~~~v~~~~gd~~~~l~~  186 (282)
                      ....+++||.||.|.|..+..+++. + ..+|+.||++++.++.+++.+...         ...+|++++.+|+.+.+..
T Consensus        69 ~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~  146 (276)
T d1mjfa_          69 AHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  146 (276)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             cCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc
Confidence            3457889999999999999888864 3 468999999999999999877432         2357899999999988764


Q ss_pred             HHhCCCCCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          187 LILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       187 l~~~~~~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                            .++||+|++|....       ...++++.+.+.   |+|||++++.
T Consensus       147 ------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~---L~~~Gv~v~q  189 (276)
T d1mjfa_         147 ------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDA---LNNPGIYVTQ  189 (276)
T ss_dssp             ------CCCEEEEEEECCCCC-----TTSHHHHHHHHHH---EEEEEEEEEE
T ss_pred             ------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhh---cCCCceEEEe
Confidence                  57899999986632       146789999999   9999999885

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.24  E-value=1.3e-11  Score=107.61  Aligned_cols=106  Identities=18%  Similarity=0.184  Sum_probs=87.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC----CCCcEEEEEcchhhHHHHHHhCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG----VSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g----~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ...+++||.||.|.|..+..+++..+ ..+|+.||++++.++.+++++...+    -+++++++.+|+.+.+...     
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc-----
Confidence            45788999999999999999887644 6799999999999999999986421    2468999999999988764     


Q ss_pred             CCceeEEEEcCCc----------cccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEK----------RMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~----------~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++||+||+|...          -...++++.+.+.   |+|||++++.
T Consensus       149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~---L~p~Gvlv~~  194 (312)
T d1uira_         149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAH---LNPGGVMGMQ  194 (312)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHT---EEEEEEEEEE
T ss_pred             CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHh---cCCCceEEEe
Confidence            6789999998631          1146789999998   9999999885

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=4.5e-11  Score=107.36  Aligned_cols=125  Identities=18%  Similarity=0.171  Sum_probs=86.0

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC-------CC-CcEEE
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-------VS-HKVKI  175 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g-------~~-~~v~~  175 (282)
                      .+....-+...+...++++|||||||+|..++.+|...+ .++++|||+++.+++.|+++.+..+       .. ..+.+
T Consensus       201 ~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            344444444445678889999999999999999998876 4699999999999999999887642       11 22333


Q ss_pred             -EEcchhhH--HHHHHhCCCCCceeEEEEcCC--ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          176 -KHGLAADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       176 -~~gd~~~~--l~~l~~~~~~~~fDlV~id~~--~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                       ..++..+.  ....     -..+|+|++...  ..+....+..+.+.   |||||.||..+.+.+.
T Consensus       280 ~~~~~f~~~~~~d~~-----~~~adVV~inn~~f~~~l~~~L~ei~r~---LKPGGrIVs~~~~~~~  338 (406)
T d1u2za_         280 SLKKSFVDNNRVAEL-----IPQCDVILVNNFLFDEDLNKKVEKILQT---AKVGCKIISLKSLRSL  338 (406)
T ss_dssp             EESSCSTTCHHHHHH-----GGGCSEEEECCTTCCHHHHHHHHHHHTT---CCTTCEEEESSCSSCT
T ss_pred             eeeechhhccccccc-----cccceEEEEecccCchHHHHHHHHHHHh---cCCCcEEEEecccCCC
Confidence             34444432  2222     257899998754  23344455666665   9999999987765433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.5e-11  Score=102.78  Aligned_cols=107  Identities=17%  Similarity=0.297  Sum_probs=86.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh---CCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ....+++||-||.|.|..+..+.+..+ ..+++.||++++.++.+++.+...   --++|++++.+|+.+.+...     
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----  148 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-----
Confidence            345788999999999999999987644 579999999999999999988642   12478999999999887653     


Q ss_pred             CCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .++||+|++|....       ...++++.+.+.   |+|||++++.
T Consensus       149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~---L~~~Gi~v~q  191 (285)
T d2o07a1         149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTA---LKEDGVLCCQ  191 (285)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHH---EEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcccccccHHHHHHHHHh---cCCCCeEEEe
Confidence            57999999996521       134588999998   9999999986

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=8.5e-11  Score=96.12  Aligned_cols=90  Identities=18%  Similarity=0.158  Sum_probs=70.3

Q ss_pred             cCHHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          103 VSPDQAQLLAMLVQI---LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~---~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      +.+..+..+..++..   ..+++|||+|||+|..++.++...  ..+|+++|+++.+++.+++|++..+.  +++++.+|
T Consensus        27 Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d  102 (201)
T d1wy7a1          27 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGD  102 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECc
Confidence            444444444444432   367899999999999999887642  35999999999999999999988775  47899999


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCc
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEK  205 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~  205 (282)
                      ..+.         .++||+||+|++.
T Consensus       103 ~~~~---------~~~fD~Vi~nPP~  119 (201)
T d1wy7a1         103 VSEF---------NSRVDIVIMNPPF  119 (201)
T ss_dssp             GGGC---------CCCCSEEEECCCC
T ss_pred             hhhh---------CCcCcEEEEcCcc
Confidence            8653         5789999999873

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=9.8e-11  Score=100.13  Aligned_cols=107  Identities=15%  Similarity=0.193  Sum_probs=88.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...+++||-||.|.|..+..++++.+ ..+++.||++++.++.+++.+....   -+.|++++.+|+.+.+...     .
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~-----~  146 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-----E  146 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-----C
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc-----C
Confidence            45778999999999999999997644 5799999999999999999886422   2468999999999887653     5


Q ss_pred             CceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ++||+|++|....       ...++++.+.+.   |+|||+++...
T Consensus       147 ~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~---L~~~Gv~v~q~  189 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKA---LKEDGIFVAQT  189 (274)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHH---EEEEEEEEEEC
T ss_pred             CCCCEEEEcCCCCCCcchhhccHHHHHHHHhh---cCCCceEEEec
Confidence            7999999996522       256789999999   99999999863

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.16  E-value=8.5e-11  Score=101.87  Aligned_cols=108  Identities=21%  Similarity=0.280  Sum_probs=86.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHHhCCC
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ....+++||-||.|.|..+..++++-+ ..+|+.||++++.++.+++.+....   -++|++++.+|+.+.+...     
T Consensus       103 ~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~-----  176 (312)
T d2b2ca1         103 AHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH-----  176 (312)
T ss_dssp             HSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC-----
T ss_pred             cCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC-----
Confidence            345788999999999999999987643 5799999999999999999875422   1368999999999888654     


Q ss_pred             CCceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          193 ASSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       193 ~~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+||+|++|....       ...++++.+.+.   |+|||+++...
T Consensus       177 ~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~---L~~~Gi~v~q~  220 (312)
T d2b2ca1         177 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDA---LKEDGILSSQG  220 (312)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHH---EEEEEEEEEEC
T ss_pred             CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhh---cCCCcEEEEec
Confidence            68999999986522       245688999999   99999999963

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.7e-11  Score=101.56  Aligned_cols=85  Identities=20%  Similarity=0.223  Sum_probs=70.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +..++||||||+|..++.++...+ +.+++|+|+++++++.|++|++.+++.+++.+++.+..+.+.........++||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            456999999999999999999887 7899999999999999999999999999999998766443221111112468999


Q ss_pred             EEEcCC
Q 023411          199 AFVDAE  204 (282)
Q Consensus       199 V~id~~  204 (282)
                      |+++++
T Consensus       140 ivsNPP  145 (250)
T d2h00a1         140 CMCNPP  145 (250)
T ss_dssp             EEECCC
T ss_pred             EEecCc
Confidence            999877

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=8.7e-11  Score=95.51  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=59.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      .+++|||+|||+|..++.++...  ..+|++||+++.+++.|++|..      +++++++|+.+.         .++||+
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l---------~~~fD~  110 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI---------SGKYDT  110 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC---------CCCEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHccc------cccEEEEehhhc---------CCcceE
Confidence            67899999999999998877643  2589999999999999998753      489999998653         589999


Q ss_pred             EEEcCCc
Q 023411          199 AFVDAEK  205 (282)
Q Consensus       199 V~id~~~  205 (282)
                      |+++.+.
T Consensus       111 Vi~NPPf  117 (197)
T d1ne2a_         111 WIMNPPF  117 (197)
T ss_dssp             EEECCCC
T ss_pred             EEeCccc
Confidence            9999773

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.14  E-value=1.6e-10  Score=99.45  Aligned_cols=108  Identities=20%  Similarity=0.337  Sum_probs=88.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ...+++||-||.|.|..+..+++..+ ..+++.||++++.++.+++.+....   -.++++++.+|+.+.+....    +
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~----~  152 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAA----E  152 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSC----T
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhcc----c
Confidence            34678999999999999999988644 5699999999999999999875422   25789999999998876531    3


Q ss_pred             CceeEEEEcCCcc-------ccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKR-------MYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~-------~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ++||+|++|....       ...++++.+.+.   |+|||++++.-
T Consensus       153 ~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~---L~~~Gi~v~q~  195 (290)
T d1xj5a_         153 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARA---LRPGGVVCTQA  195 (290)
T ss_dssp             TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHH---EEEEEEEEEEC
T ss_pred             cCccEEEEcCCCCCCcchhhCCHHHHHHHHHh---cCCCcEEEEec
Confidence            6899999987522       246789999999   99999999964

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.9e-11  Score=104.10  Aligned_cols=116  Identities=9%  Similarity=-0.042  Sum_probs=70.1

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCc--------------------------
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK--------------------------  172 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~--------------------------  172 (282)
                      ++.+|||||||+|..++..+...  ..+|+++|+++.+++.++++++..+..-.                          
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            57799999999998776555432  25899999999999999988764332110                          


Q ss_pred             ---EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCc----cccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          173 ---VKIKHGLAADSLKALILNGEASSYDFAFVDAEK----RMYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       173 ---v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~----~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                         ..+...|.....+........++||+|++....    .+..++...+.+++++|||||+|++-+++..
T Consensus       132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence               012222222110000000113589999986542    2223344444444455999999999777543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.3e-09  Score=96.49  Aligned_cols=124  Identities=14%  Similarity=0.171  Sum_probs=97.8

Q ss_pred             CCCCccCHHHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcE
Q 023411           98 GSQMQVSPDQAQLLAMLV----QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  173 (282)
Q Consensus        98 ~~~~~~~~~~~~ll~~l~----~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v  173 (282)
                      .++.++++...+.+...+    ...+..+|||+.||+|.+++.+++..   .+|+|+|.++++++.|+++.+.+|+.+ +
T Consensus       187 ~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n-~  262 (358)
T d1uwva2         187 RDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQN-V  262 (358)
T ss_dssp             SSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCS-E
T ss_pred             chhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhccccc-c
Confidence            456788888877666544    34467899999999999999999753   699999999999999999999999985 9


Q ss_pred             EEEEcchhhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       174 ~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +++.++..+.+......  ..++|+|++|++.......++.+.+.    +|.-++.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~--~~~~d~vilDPPR~G~~~~~~~l~~~----~~~~ivYVS  314 (358)
T d1uwva2         263 TFYHENLEEDVTKQPWA--KNGFDKVLLDPARAGAAGVMQQIIKL----EPIRIVYVS  314 (358)
T ss_dssp             EEEECCTTSCCSSSGGG--TTCCSEEEECCCTTCCHHHHHHHHHH----CCSEEEEEE
T ss_pred             eeeecchhhhhhhhhhh--hccCceEEeCCCCccHHHHHHHHHHc----CCCEEEEEe
Confidence            99999987654322111  46799999999966666677777764    777777664

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.1e-08  Score=85.84  Aligned_cols=160  Identities=17%  Similarity=0.197  Sum_probs=110.2

Q ss_pred             CccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       101 ~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      ..+......+...++...++.+|||+++|.|+=|..++.... +++|+++|+++..+...+++++..|..+ +.....+.
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~  161 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGR  161 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTT
T ss_pred             EEeccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccc-eeeecccc
Confidence            345666666777777888999999999999999999998765 6899999999999999999999999875 44444443


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCcc---------c----------------cHHHHHHHHHhhcCCCCCcEEEEeCCCC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKR---------M----------------YQEYFELLLQLLLQIRVGGIIVIDNVLW  235 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~---------~----------------~~~~l~~~~~~~~~LkpgG~lv~dd~~~  235 (282)
                      .......     .+.||.|++|++..         +                ....+..+.++   |||||+||..-.-.
T Consensus       162 ~~~~~~~-----~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~---lk~gG~lvYsTCS~  233 (284)
T d1sqga2         162 YPSQWCG-----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPH---LKTGGTLVYATCSV  233 (284)
T ss_dssp             CTHHHHT-----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGG---EEEEEEEEEEESCC
T ss_pred             ccchhcc-----cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHh---cCCCceEEEeeecC
Confidence            3222211     47899999997611         0                12234444444   99999999865543


Q ss_pred             CCcccCCcCCChhhHHHHHHHHHhhhCCCeEEE-----------Eeec---CCceEEEEE
Q 023411          236 HGKVADQMVNDAKTISIRNFNKNLMEDERVSIS-----------MVPI---GDGMTICQK  281 (282)
Q Consensus       236 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~lp~---~~Gl~~~~k  281 (282)
                      .-.        ++..-++.|++.   .++++.+           ++|-   .||+=+|+-
T Consensus       234 ~~~--------ENE~vv~~~l~~---~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l  282 (284)
T d1sqga2         234 LPE--------ENSLQIKAFLQR---TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKL  282 (284)
T ss_dssp             CGG--------GTHHHHHHHHHH---CTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEE
T ss_pred             chh--------hCHHHHHHHHHh---CCCcEEecCCCCCCCcEEECCCCCCcccEEEEEE
Confidence            322        334456777654   4444432           3342   578877763

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.83  E-value=3.2e-08  Score=85.78  Aligned_cols=141  Identities=16%  Similarity=0.199  Sum_probs=105.1

Q ss_pred             CCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc
Q 023411          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  179 (282)
Q Consensus       100 ~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd  179 (282)
                      ...+......+...++...++.+|||+++|.|+=|..++..+...+.++++|+++..+...+++++..|..+ +.+...|
T Consensus        97 ~~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d  175 (313)
T d1ixka_          97 LIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSS  175 (313)
T ss_dssp             SEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSC
T ss_pred             eEEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccc
Confidence            345566666777777788899999999999999999999988777999999999999999999999999875 7777777


Q ss_pred             hhhHHHHHHhCCCCCceeEEEEcCCccc-------------------------cHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          180 AADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       180 ~~~~l~~l~~~~~~~~fDlV~id~~~~~-------------------------~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      .... +..     ...||.|++|++...                         ....+....++   |||||+||..-.-
T Consensus       176 ~~~~-~~~-----~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~---lk~gG~lVYsTCS  246 (313)
T d1ixka_         176 SLHI-GEL-----NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV---LKPGGILVYSTCS  246 (313)
T ss_dssp             GGGG-GGG-----CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEEESC
T ss_pred             cccc-ccc-----cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhe---eCCCcEEEEeecc
Confidence            7654 222     578999999976110                         22244555556   9999998886554


Q ss_pred             CCCcccCCcCCChhhHHHHHHHHH
Q 023411          235 WHGKVADQMVNDAKTISIRNFNKN  258 (282)
Q Consensus       235 ~~g~~~~~~~~~~~~~~~~~~~~~  258 (282)
                      ..-.        ++..-++.|++.
T Consensus       247 l~~e--------ENE~VV~~~L~~  262 (313)
T d1ixka_         247 LEPE--------ENEFVIQWALDN  262 (313)
T ss_dssp             CCGG--------GTHHHHHHHHHH
T ss_pred             CChH--------hHHHHHHHHHhc
Confidence            3222        233446666654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.81  E-value=2.8e-08  Score=88.11  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=89.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCC--------------cEEEEEcch
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--------------KVKIKHGLA  180 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~--------------~v~~~~gd~  180 (282)
                      ++..++.+|||..||+|..++..+...+ ..+|++.|+|++.++.+++|++.++..+              .+.+.+.|+
T Consensus        41 ~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da  119 (375)
T d2dula1          41 LNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA  119 (375)
T ss_dssp             HHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH
T ss_pred             HHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhh
Confidence            3445788999999999999998887765 5689999999999999999999998653              467888888


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...+...     ...||+|.+|+. .....+++.+.+.   ++.||+|.+...
T Consensus       120 ~~~~~~~-----~~~fDvIDiDPf-Gs~~pfldsAi~a---~~~~Gll~vTaT  163 (375)
T d2dula1         120 NRLMAER-----HRYFHFIDLDPF-GSPMEFLDTALRS---AKRRGILGVTAT  163 (375)
T ss_dssp             HHHHHHS-----TTCEEEEEECCS-SCCHHHHHHHHHH---EEEEEEEEEEEC
T ss_pred             hhhhHhh-----cCcCCcccCCCC-CCcHHHHHHHHHH---hccCCEEEEEec
Confidence            7665443     578999999974 4456789999998   999999999644

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=8.6e-09  Score=84.09  Aligned_cols=102  Identities=12%  Similarity=0.171  Sum_probs=86.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ...++.+|+|+|||.|.-++.+|-..| +.+++.+|.+..-+...++.....++.+ ++++++++.+...       ..+
T Consensus        62 ~~~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~-------~~~  132 (207)
T d1jsxa_          62 PYLQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS-------EPP  132 (207)
T ss_dssp             GGCCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC-------CSC
T ss_pred             hhhcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhcc-------ccc
Confidence            344678999999999999999998877 7999999999999999999999999874 9999999876422       468


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ||+|++-+. ......++.+.++   +++||.+++
T Consensus       133 fD~V~sRA~-~~~~~ll~~~~~~---l~~~g~~~~  163 (207)
T d1jsxa_         133 FDGVISRAF-ASLNDMVSWCHHL---PGEQGRFYA  163 (207)
T ss_dssp             EEEEECSCS-SSHHHHHHHHTTS---EEEEEEEEE
T ss_pred             cceehhhhh-cCHHHHHHHHHHh---cCCCcEEEE
Confidence            999988766 3466778888888   999999887

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.3e-08  Score=85.96  Aligned_cols=96  Identities=20%  Similarity=0.209  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH
Q 023411          105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  184 (282)
Q Consensus       105 ~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l  184 (282)
                      .....+...++...++.+|||+++|.|+-|..++..+...++++++|+++..++..+++++..|+.+ +.+...|.....
T Consensus        80 D~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~  158 (293)
T d2b9ea1          80 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVS  158 (293)
T ss_dssp             CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSC
T ss_pred             CCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhc
Confidence            3334455566677788999999999999999999887767999999999999999999999999875 899998886543


Q ss_pred             HHHHhCCCCCceeEEEEcCC
Q 023411          185 KALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       185 ~~l~~~~~~~~fDlV~id~~  204 (282)
                      +...   ..++||.|++|++
T Consensus       159 ~~~~---~~~~fD~VL~DaP  175 (293)
T d2b9ea1         159 PSDP---RYHEVHYILLDPS  175 (293)
T ss_dssp             TTCG---GGTTEEEEEECCC
T ss_pred             cccc---ccceeeEEeecCc
Confidence            2110   0368999999966

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=1e-07  Score=76.02  Aligned_cols=105  Identities=14%  Similarity=0.163  Sum_probs=81.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      ....++..++|..+|.|+.+..++..   +++|+|+|.+++++..+++.     ...++.+++++..+....+...+ .+
T Consensus        14 l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~-~~   84 (182)
T d1wg8a2          14 LAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALG-VE   84 (182)
T ss_dssp             HTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTT-CS
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcC-CC
Confidence            34568889999999999999999884   58999999999999888763     34579999999887654443333 57


Q ss_pred             ceeEEEEcCCccc------------cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          195 SYDFAFVDAEKRM------------YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       195 ~fDlV~id~~~~~------------~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      .+|.|+.|-+...            ....++....+   |++||.+++-
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~---lk~gg~~~ii  130 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEV---LAPGGRLVVI  130 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhh---hCCCCeEEEE
Confidence            8999999876321            23356777777   9999999873

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.67  E-value=7.2e-08  Score=80.58  Aligned_cols=100  Identities=15%  Similarity=0.083  Sum_probs=76.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+..+|||||||+|..+..++++.| +.+++.+|+ |+.       ++..+..++++++.+|..+..         ...|
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v-------i~~~~~~~ri~~~~gd~~~~~---------p~~D  141 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQV-------IENAPPLSGIEHVGGDMFASV---------PQGD  141 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHH-------HTTCCCCTTEEEEECCTTTCC---------CCEE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhh-------hhccCCCCCeEEecCCccccc---------ccce
Confidence            4567999999999999999999998 789999998 433       334556689999999987532         3459


Q ss_pred             EEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          198 FAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       198 lV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      ++++-...++     ....++.+.+.   |+|||.|++.+.+.+..
T Consensus       142 ~~~l~~vLh~~~de~~~~iL~~~~~a---L~pgg~llI~e~v~~~~  184 (244)
T d1fp1d2         142 AMILKAVCHNWSDEKCIEFLSNCHKA---LSPNGKVIIVEFILPEE  184 (244)
T ss_dssp             EEEEESSGGGSCHHHHHHHHHHHHHH---EEEEEEEEEEEEEECSS
T ss_pred             EEEEehhhhhCCHHHHHHHHHHHHHH---cCCCcEEEEEEEEecCC
Confidence            9998766444     34466777777   99999888877765543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.66  E-value=1.1e-07  Score=78.97  Aligned_cols=103  Identities=20%  Similarity=0.254  Sum_probs=85.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      ...+|+|||||.|.-++.++-..| +.+++.+|.+..-+...+......++.+ +.++++.+.+.....   ...++||+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~---~~~~~~D~  144 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRK---DVRESYDI  144 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCT---TTTTCEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccc---cccccceE
Confidence            567999999999999999998887 7899999999999999999999999985 899998886532110   01368999


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      |++-+.. .....++.+.++   +++||.+++
T Consensus       145 v~sRAva-~l~~ll~~~~~~---l~~~g~~i~  172 (239)
T d1xdza_         145 VTARAVA-RLSVLSELCLPL---VKKNGLFVA  172 (239)
T ss_dssp             EEEECCS-CHHHHHHHHGGG---EEEEEEEEE
T ss_pred             EEEhhhh-CHHHHHHHHhhh---cccCCEEEE
Confidence            9998774 356678888898   999999887

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.66  E-value=3.1e-08  Score=86.31  Aligned_cols=115  Identities=12%  Similarity=0.051  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHHHCC----CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEE
Q 023411          104 SPDQAQLLAMLV----QILGAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYERAGVSHKVKI  175 (282)
Q Consensus       104 ~~~~~~ll~~l~----~~~~~~~VLEIG~G~G~~t~~la~~~~----~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~  175 (282)
                      .+....++..++    ...++.+|+|.|||+|.+...+...+.    ...+++|+|+++.++..|+.++...+..  ..+
T Consensus        98 P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~  175 (328)
T d2f8la1          98 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTL  175 (328)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhh
Confidence            444455554443    455677999999999999988876542    1347999999999999999998887764  577


Q ss_pred             EEcchhhHHHHHHhCCCCCceeEEEEcCCccc---------------------cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          176 KHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------------YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       176 ~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~---------------------~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .++|.....+       ..+||+|+.+++...                     +..+++.+.++   |+|||.+++
T Consensus       176 ~~~d~~~~~~-------~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~---Lk~~G~~~~  241 (328)
T d2f8la1         176 LHQDGLANLL-------VDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY---TKPGGYLFF  241 (328)
T ss_dssp             EESCTTSCCC-------CCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT---EEEEEEEEE
T ss_pred             hccccccccc-------cccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHh---cCCCCceEE
Confidence            7887754322       579999999877311                     22356777777   999997644

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.65  E-value=7e-08  Score=78.76  Aligned_cols=107  Identities=16%  Similarity=0.211  Sum_probs=80.8

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      .+....+|..++...++.+|||.|||+|.+...+.+..+....++++|+++..+.          +..+..++++|....
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~~~   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFLLW   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehhcc
Confidence            4566778888888888899999999999999988887776688999999987542          233568888888654


Q ss_pred             HHHHHhCCCCCceeEEEEcCCcc--------------------------------ccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          184 LKALILNGEASSYDFAFVDAEKR--------------------------------MYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~--------------------------------~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..       ..+||+|+.+.+..                                .+..+++...++   |++||.+++
T Consensus        74 ~~-------~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~---lk~~G~~~~  142 (223)
T d2ih2a1          74 EP-------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRL---LKPGGVLVF  142 (223)
T ss_dssp             CC-------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHH---EEEEEEEEE
T ss_pred             cc-------ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHh---cccCCceEE
Confidence            22       57999999875511                                023455667777   999998765

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.1e-07  Score=78.99  Aligned_cols=104  Identities=18%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +++.....+...+...+.+.|||||+|.|..|..+++.   +.+|++||+++.+++..++.+......++++++++|+.+
T Consensus         5 ~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~   81 (278)
T d1zq9a1           5 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   81 (278)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence            34455555555666677889999999999999999987   369999999999999999988776666789999999986


Q ss_pred             HHHHHHhCCCCCceeEEEEcCCccccHHHHHHHHH
Q 023411          183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ  217 (282)
Q Consensus       183 ~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~~  217 (282)
                      ..        ...++.|+.+-+..-....+..+..
T Consensus        82 ~~--------~~~~~~vV~NLPY~Iss~il~~~~~  108 (278)
T d1zq9a1          82 TD--------LPFFDTCVANLPYQISSPFVFKLLL  108 (278)
T ss_dssp             SC--------CCCCSEEEEECCGGGHHHHHHHHHH
T ss_pred             hh--------hhhhhhhhcchHHHHHHHHHHHHHh
Confidence            41        2345677777776655555555444

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.62  E-value=8.4e-08  Score=79.70  Aligned_cols=100  Identities=9%  Similarity=0.041  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       104 ~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      ++....-+...+...++++|||||||+|..|..+++.   ..+|++||+++.+++.+++.+..   .++++++++|+.+.
T Consensus         6 d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~~   79 (235)
T d1qama_           6 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQF   79 (235)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhhc
Confidence            3444444444455668899999999999999999986   36899999999999998887643   34699999999875


Q ss_pred             HHHHHhCCCCCceeEEEEcCCccccHHHHHHH
Q 023411          184 LKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (282)
Q Consensus       184 l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~  215 (282)
                      ..  .    ......|+.+-+..-....+..+
T Consensus        80 ~~--~----~~~~~~vv~NLPYnIss~il~~l  105 (235)
T d1qama_          80 KF--P----KNQSYKIFGNIPYNISTDIIRKI  105 (235)
T ss_dssp             CC--C----SSCCCEEEEECCGGGHHHHHHHH
T ss_pred             cc--c----ccccceeeeeehhhhhHHHHHHH
Confidence            21  0    22333566666655445544444

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.60  E-value=2.8e-07  Score=76.86  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ....+|||||||+|..+..++++.| +.+++..|. |+.       ++..+..+|++++.+|+.+.         ...+|
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v-------i~~~~~~~rv~~~~gD~f~~---------~p~aD  140 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQV-------VENLSGSNNLTYVGGDMFTS---------IPNAD  140 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHH-------HTTCCCBTTEEEEECCTTTC---------CCCCS
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHH-------HHhCcccCceEEEecCcccC---------CCCCc
Confidence            4567899999999999999999998 789999998 433       33456678999999998752         24679


Q ss_pred             EEEEcCCccc-----cHHHHHHHHHhhcCCCCC---cEEEEeCCCCCC
Q 023411          198 FAFVDAEKRM-----YQEYFELLLQLLLQIRVG---GIIVIDNVLWHG  237 (282)
Q Consensus       198 lV~id~~~~~-----~~~~l~~~~~~~~~Lkpg---G~lv~dd~~~~g  237 (282)
                      ++++-...++     ....++.+.+.   |+||   |.+++.+...+.
T Consensus       141 ~~~l~~vLHdw~d~~~~~iL~~~~~a---l~pgg~~~~lli~e~~~~~  185 (244)
T d1fp2a2         141 AVLLKYILHNWTDKDCLRILKKCKEA---VTNDGKRGKVTIIDMVIDK  185 (244)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHH---HSGGGCCCEEEEEECEECT
T ss_pred             EEEEEeecccCChHHHHHHHHHHHHH---cCcccCCcEEEEEEeecCC
Confidence            9998666444     34467777777   9998   666665554443

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.54  E-value=6.6e-08  Score=80.76  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=71.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+..+|||||||+|..+..++++.| +.+++.+|+.+ .+       +.....++++++.+|..+..|         ..|
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi-------~~~~~~~r~~~~~~d~~~~~P---------~ad  141 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPH-VI-------EDAPSYPGVEHVGGDMFVSIP---------KAD  141 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTT-TT-------TTCCCCTTEEEEECCTTTCCC---------CCS
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHH-hh-------hhcccCCceEEecccccccCC---------Ccc
Confidence            3457999999999999999999998 88999999954 32       334456789999999876322         235


Q ss_pred             EEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCC
Q 023411          198 FAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWH  236 (282)
Q Consensus       198 lV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~  236 (282)
                      .+++-..     .+.....++.+.+.   |+|||.+++.+...+
T Consensus       142 ~~~l~~vlh~~~d~~~~~iL~~~~~a---l~pgg~~li~d~~~~  182 (243)
T d1kyza2         142 AVFMKWICHDWSDEHCLKFLKNCYEA---LPDNGKVIVAECILP  182 (243)
T ss_dssp             CEECSSSSTTSCHHHHHHHHHHHHHH---CCSSSCEEEEECEEC
T ss_pred             eEEEEEEeecCCHHHHHHHHHHHHHh---cCCCceEEEEEEEec
Confidence            5554333     23355577888887   999998777666543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.52  E-value=6.6e-08  Score=77.95  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             cCCCEEEEEcccccHHHHH----HHHHCC---CCCEEEEEecCccHHHHHHHHH------------------HHhCCC--
Q 023411          118 LGAQRCIEVGVYTGYSSLA----IALVLP---ESGCLVACERDARSLEVAKKYY------------------ERAGVS--  170 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~----la~~~~---~~~~v~~iD~s~~~~~~a~~~~------------------~~~g~~--  170 (282)
                      .++-+|+++|||+|.-+..    +.+...   ...+++|+|+++..++.|++..                  ...+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3456999999999985433    333322   1247999999999999887421                  111111  


Q ss_pred             ----------CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc-----cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          171 ----------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-----YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       171 ----------~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~-----~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                                ..+.+...+..+..+     ...++||+|||-+....     ....++.+.+.   |+|||+|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~---L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQY-----NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPL---LKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSC-----CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGG---EEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhcccccc-----CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHH---hCCCcEEEEe
Confidence                      113333333322100     01478999999877332     34456666666   9999999985

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.46  E-value=1.8e-08  Score=84.35  Aligned_cols=103  Identities=10%  Similarity=0.094  Sum_probs=73.8

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  181 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~  181 (282)
                      ..++....-+...+...+.++|||||||+|..|..+++.   +.+|++||+++.+++.+++.+.   ...+++++++|+.
T Consensus        12 L~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l   85 (245)
T d1yuba_          12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDIL   85 (245)
T ss_dssp             CCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCT
T ss_pred             cCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhh
Confidence            344444445555666678889999999999999999987   3699999999999888776654   2347999999998


Q ss_pred             hHHHHHHhCCCCCceeEEEEcCCccccHHHHHHHH
Q 023411          182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  216 (282)
Q Consensus       182 ~~l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~~  216 (282)
                      +.-  +    ....++.|+.+-+..-....+..+.
T Consensus        86 ~~~--~----~~~~~~~vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          86 QFQ--F----PNKQRYKIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             TTT--C----CCSSEEEEEEECCSSSCHHHHHHHH
T ss_pred             ccc--c----ccceeeeEeeeeehhhhHHHHHHHh
Confidence            752  1    1356666776666555555444433

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=9.8e-07  Score=70.07  Aligned_cols=100  Identities=19%  Similarity=0.233  Sum_probs=71.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHH--HHHhCCCCCc
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK--ALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~--~l~~~~~~~~  195 (282)
                      .+..+|||+||+.|+|+.++.+..+..+.++++|+.+-.           .. +.+.++++|..+...  .........+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i-~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PI-VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CC-TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------cc-CCceEeecccccchhhhhhhhhccCcc
Confidence            467899999999999999999888767999999997731           23 358999999865321  1111112478


Q ss_pred             eeEEEEcCCccc--------------cHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          196 YDFAFVDAEKRM--------------YQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       196 fDlV~id~~~~~--------------~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +|+|+.|..+.-              ....+..+.++   |++||.+|+.-
T Consensus        89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~---Lk~gG~fV~K~  136 (180)
T d1ej0a_          89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDV---LAPGGSFVVKV  136 (180)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHH---EEEEEEEEEEE
T ss_pred             eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhc---cCCCCcEEEEE
Confidence            999999976321              12234455566   99999999964

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=2.8e-07  Score=77.22  Aligned_cols=105  Identities=11%  Similarity=-0.058  Sum_probs=71.6

Q ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 023411          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  182 (282)
Q Consensus       103 ~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~  182 (282)
                      +++....-+...+...+++.|||||||.|..|..+++.   ..+|++||+|+.+++..++.+.   ..++++++++|+.+
T Consensus         5 ~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~   78 (252)
T d1qyra_           5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMT   78 (252)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhh
Confidence            34445555566666678889999999999999999985   3689999999999988876443   23579999999987


Q ss_pred             H-HHHHHhCCCCCceeEEEEcCCccccHHHHHHH
Q 023411          183 S-LKALILNGEASSYDFAFVDAEKRMYQEYFELL  215 (282)
Q Consensus       183 ~-l~~l~~~~~~~~fDlV~id~~~~~~~~~l~~~  215 (282)
                      . +..+...  .+.--.|+.+-+..-....+..+
T Consensus        79 ~~~~~~~~~--~~~~~~vvgNlPY~Iss~Il~~l  110 (252)
T d1qyra_          79 FNFGELAEK--MGQPLRVFGNLPYNISTPLMFHL  110 (252)
T ss_dssp             CCHHHHHHH--HTSCEEEEEECCTTTHHHHHHHH
T ss_pred             hcccccccc--cCCCeEEEecchHHHHHHHHHHh
Confidence            3 2222111  12223566666655444444444

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.22  E-value=3.1e-06  Score=75.95  Aligned_cols=122  Identities=10%  Similarity=0.076  Sum_probs=94.7

Q ss_pred             CCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCC------------CEEEEEecCccHHHHHHHHHHH
Q 023411           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES------------GCLVACERDARSLEVAKKYYER  166 (282)
Q Consensus        99 ~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~------------~~v~~iD~s~~~~~~a~~~~~~  166 (282)
                      +...+......++..++......+|+|-.||+|.+...+.+.+...            ..++|+|+++.....|+-++-.
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            4566778888899999888888999999999999998888765321            2489999999999999999888


Q ss_pred             hCCC-CcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc--------------------ccHHHHHHHHHhhcCCCCC
Q 023411          167 AGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--------------------MYQEYFELLLQLLLQIRVG  225 (282)
Q Consensus       167 ~g~~-~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~--------------------~~~~~l~~~~~~~~~Lkpg  225 (282)
                      .|.. +...+..+|..+..+       ..+||+|+.+++..                    ....++..+..+   |++|
T Consensus       222 ~g~~~~~~~i~~~d~l~~~~-------~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~---Lk~~  291 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEKEP-------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLM---LKTG  291 (425)
T ss_dssp             TTCCSSCCSEEECCTTTSCC-------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHH---EEEE
T ss_pred             cCCccccceeecCchhhhhc-------ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHh---cCCC
Confidence            8765 345678888765321       57899999987621                    123477888888   9999


Q ss_pred             cEEEE
Q 023411          226 GIIVI  230 (282)
Q Consensus       226 G~lv~  230 (282)
                      |.+++
T Consensus       292 G~~~i  296 (425)
T d2okca1         292 GRAAV  296 (425)
T ss_dssp             EEEEE
T ss_pred             CeEEE
Confidence            96554

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.17  E-value=7.6e-07  Score=74.08  Aligned_cols=76  Identities=12%  Similarity=0.184  Sum_probs=63.8

Q ss_pred             CEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCC--------CCcEEEEEcchhhHHHHHHhCCC
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------SHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~--------~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+|||..+|.|..+..++..   +++|+++|.+|......++.++.+..        ..+++++++|+.+++...     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999986   47999999999988888877766432        237999999999887654     


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+.||+|++|+-
T Consensus       162 ~~~~DvIYlDPM  173 (250)
T d2oyra1         162 TPRPQVVYLDPM  173 (250)
T ss_dssp             SSCCSEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            578999999975

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=1.8e-05  Score=72.71  Aligned_cols=124  Identities=8%  Similarity=-0.006  Sum_probs=89.9

Q ss_pred             CCCccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCC-----------------CEEEEEecCccHHHHHH
Q 023411           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPES-----------------GCLVACERDARSLEVAK  161 (282)
Q Consensus        99 ~~~~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~-----------------~~v~~iD~s~~~~~~a~  161 (282)
                      +...+......+|..++...++.+|+|-.||+|.+...+.+.+...                 ..++|+|+++.....++
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            4556777888899999888888899999999999988877654211                 25899999999999999


Q ss_pred             HHHHHhCCCCc----EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-----------------ccHHHHHHHHHhhc
Q 023411          162 KYYERAGVSHK----VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------MYQEYFELLLQLLL  220 (282)
Q Consensus       162 ~~~~~~g~~~~----v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-----------------~~~~~l~~~~~~~~  220 (282)
                      -++-..+....    -.+..++........     ..+||+|+.+++..                 ....++..+.++  
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~-----~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~--  296 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGEN-----LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIET--  296 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHT-----SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHH--
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccc-----cccceeEEecCCccccccccchhhhccccccccHHHHHHHHHh--
Confidence            98887765432    234555554322211     47899999987621                 123477888888  


Q ss_pred             CCCCCcEEEE
Q 023411          221 QIRVGGIIVI  230 (282)
Q Consensus       221 ~LkpgG~lv~  230 (282)
                       |++||.+.+
T Consensus       297 -Lk~gGr~ai  305 (524)
T d2ar0a1         297 -LHPGGRAAV  305 (524)
T ss_dssp             -EEEEEEEEE
T ss_pred             -ccccCcEEE
Confidence             999997654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.68  E-value=3.6e-05  Score=60.51  Aligned_cols=107  Identities=16%  Similarity=0.209  Sum_probs=68.3

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCC
Q 023411          116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS  194 (282)
Q Consensus       116 ~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~  194 (282)
                      +..++++||-+|+| .|..+..+++..+ ..+|+++|.+++.++.+++    .|...-+.....+..+....+.+.....
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             CCCCCCEEEEECCCccchhheecccccc-ccccccccccccccccccc----ccceEEEeccccchHHHHHHHHHhhCCC
Confidence            34577899999998 3777888888874 2389999999998887765    3433211111223333323222222245


Q ss_pred             ceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .+|+||-.....   ..++...++   |++||.+++=.+
T Consensus       100 g~Dvvid~vG~~---~~~~~a~~~---l~~~G~iv~~G~  132 (182)
T d1vj0a2         100 GADFILEATGDS---RALLEGSEL---LRRGGFYSVAGV  132 (182)
T ss_dssp             CEEEEEECSSCT---THHHHHHHH---EEEEEEEEECCC
T ss_pred             CceEEeecCCch---hHHHHHHHH---hcCCCEEEEEee
Confidence            799988554432   235677788   999999887544

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.62  E-value=6.9e-05  Score=61.53  Aligned_cols=102  Identities=10%  Similarity=0.063  Sum_probs=61.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ..+..+|+|+|||.|+++.+++...+ ...+.|+++--...+. .......+ .+-+++...+....++       .+..
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~-P~~~~~~~-~ni~~~~~~~dv~~l~-------~~~~  133 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEE-PIPMSTYG-WNLVRLQSGVDVFFIP-------PERC  133 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCSTT-GGGEEEECSCCTTTSC-------CCCC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccC-Cccccccc-cccccchhhhhHHhcC-------CCcC
Confidence            35667999999999999999987543 4567777762110000 00001111 1235665544322221       5789


Q ss_pred             eEEEEcCCcc---------ccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKR---------MYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~---------~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |+|++|....         .....++.+.+.   |+|||-+|+.
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~w---Lk~gg~FvvK  174 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENW---LSNNTQFCVK  174 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHH---CCTTCEEEEE
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHH---cccCCEEEEE
Confidence            9999997532         233456666666   9999999885

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.53  E-value=0.00015  Score=57.63  Aligned_cols=107  Identities=19%  Similarity=0.184  Sum_probs=72.8

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEE---EcchhhHHHHHHh
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK---HGLAADSLKALIL  189 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~---~gd~~~~l~~l~~  189 (282)
                      .+...++++||-+|||. |..+..+++... ..+|+++|.+++.++.|++.    |..   .++   ..+..+...++. 
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~i~~~t-   90 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ----GFE---IADLSLDTPLHEQIAALL-   90 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCE---EEETTSSSCHHHHHHHHH-
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc----ccc---EEEeCCCcCHHHHHHHHh-
Confidence            35667889999999997 667788887765 56999999999988877653    432   222   223323222221 


Q ss_pred             CCCCCceeEEEEcCCcc------------ccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          190 NGEASSYDFAFVDAEKR------------MYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~------------~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                        ....+|++|-....+            .....++.+.+.   ++|||.+++-.+.
T Consensus        91 --~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~---~r~gG~v~~~G~~  142 (195)
T d1kola2          91 --GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQV---TRVAGKIGIPGLY  142 (195)
T ss_dssp             --SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHH---EEEEEEEEECSCC
T ss_pred             --CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHH---HhcCCEEEEeeec
Confidence              145799998543311            134578889898   9999999987654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.46  E-value=0.00015  Score=56.56  Aligned_cols=106  Identities=18%  Similarity=0.201  Sum_probs=69.2

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       114 l~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+...++++|+-+|||. |..++.+++... ..+|+++|.+++.++.+++    .|..   .++.-...+....+.+..+
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~----lGa~---~~i~~~~~~~~~~v~~~t~   93 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKF----YGAT---DILNYKNGHIEDQVMKLTN   93 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHH----HTCS---EEECGGGSCHHHHHHHHTT
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHh----hCcc---ccccccchhHHHHHHHHhh
Confidence            45567888999999986 778888888764 2479999999988877764    3433   2222221122222222222


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...+|+||-.....   ..++...++   ++|+|.+++=.+
T Consensus        94 g~G~D~vid~~g~~---~~~~~a~~~---~~~~G~iv~~G~  128 (174)
T d1jqba2          94 GKGVDRVIMAGGGS---ETLSQAVKM---VKPGGIISNINY  128 (174)
T ss_dssp             TSCEEEEEECSSCT---THHHHHHHH---EEEEEEEEECCC
T ss_pred             ccCcceEEEccCCH---HHHHHHHHH---HhcCCEEEEEee
Confidence            35699988665533   235677788   999999988443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=0.00016  Score=62.04  Aligned_cols=60  Identities=10%  Similarity=0.004  Sum_probs=49.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  183 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~  183 (282)
                      ....|||||+|.|..|..++.... ..+|+++|+++...+..++.+.    .++++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            456899999999999999997642 2589999999999988887653    35699999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.44  E-value=0.00076  Score=51.77  Aligned_cols=104  Identities=17%  Similarity=0.244  Sum_probs=68.7

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch----hhHHHHHHh
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA----ADSLKALIL  189 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~----~~~l~~l~~  189 (282)
                      ....++++||-+||| .|..+..+++..  +++|+++|.+++.++.+++.    |..  ..+..-+.    .+....+..
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhc
Confidence            345678899999998 577778888876  47999999999988887763    322  33332211    112222211


Q ss_pred             CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      . ..+.+|+||-.....   ..++.+.++   ++++|.+++-..
T Consensus        94 ~-~g~g~D~vid~~g~~---~~~~~a~~~---~~~~G~iv~~G~  130 (170)
T d1e3ja2          94 A-IGDLPNVTIDCSGNE---KCITIGINI---TRTGGTLMLVGM  130 (170)
T ss_dssp             H-SSSCCSEEEECSCCH---HHHHHHHHH---SCTTCEEEECSC
T ss_pred             c-cccCCceeeecCCCh---HHHHHHHHH---HhcCCceEEEec
Confidence            1 146789987655432   446777888   999999998553

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4.8e-05  Score=59.01  Aligned_cols=101  Identities=22%  Similarity=0.182  Sum_probs=66.0

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....++++|+-+|+| .|..+..+++..  +++|+++|.+++.++.+++    .|.+.  .+...+..+.....     .
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~----lGa~~--~i~~~~~~~~~~~~-----~   89 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADH--YIATLEEGDWGEKY-----F   89 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGTSCHHHHS-----C
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc----cCCcE--EeeccchHHHHHhh-----h
Confidence            355688999999998 677788888876  5899999999998887765    35432  22212222333333     5


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +.+|.|+....... ...++...++   ++|+|.+++=.
T Consensus        90 ~~~d~vi~~~~~~~-~~~~~~~~~~---l~~~G~iv~~G  124 (168)
T d1piwa2          90 DTFDLIVVCASSLT-DIDFNIMPKA---MKVGGRIVSIS  124 (168)
T ss_dssp             SCEEEEEECCSCST-TCCTTTGGGG---EEEEEEEEECC
T ss_pred             cccceEEEEecCCc-cchHHHHHHH---hhccceEEEec
Confidence            78999886432111 1114456677   99999998854

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00044  Score=53.36  Aligned_cols=107  Identities=14%  Similarity=0.159  Sum_probs=68.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +...++++|+=+|+|. |..+..+++..+ ..+|+++|.+++.++.+++.    |.+..+.....+..+....+... ..
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~~~~~~~~-~g   95 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GADLVLQISKESPQEIARKVEGQ-LG   95 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCSEEEECSSCCHHHHHHHHHHH-HT
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCccccccccccccccccccccc-CC
Confidence            3456788999999975 556677777764 34899999999988877653    44321111112222222211111 14


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..+|+||-.....   ..++...++   +++||.+++-..
T Consensus        96 ~g~Dvvid~~G~~---~~~~~a~~~---~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTGAE---ASIQAGIYA---TRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSCCH---HHHHHHHHH---SCTTCEEEECSC
T ss_pred             CCceEEEeccCCc---hhHHHHHHH---hcCCCEEEEEec
Confidence            6889988655433   457788888   999999988543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.34  E-value=0.00021  Score=55.49  Aligned_cols=104  Identities=19%  Similarity=0.248  Sum_probs=67.5

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .+..++++|+-+|+|. |..+..+++..+ ..+++++|.+++.++.+++    .|..   .++.-+..+....+.+-. +
T Consensus        24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~t-~   94 (174)
T d1f8fa2          24 LKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGAT---HVINSKTQDPVAAIKEIT-D   94 (174)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHT-T
T ss_pred             hCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCe---EEEeCCCcCHHHHHHHHc-C
Confidence            3456888999999974 445667777765 4578899999988877765    3443   233322222323222111 4


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +.+|+||-.....   ..++.+.++   ++|+|.+++=.+
T Consensus        95 gg~D~vid~~G~~---~~~~~~~~~---~~~~G~i~~~G~  128 (174)
T d1f8fa2          95 GGVNFALESTGSP---EILKQGVDA---LGILGKIAVVGA  128 (174)
T ss_dssp             SCEEEEEECSCCH---HHHHHHHHT---EEEEEEEEECCC
T ss_pred             CCCcEEEEcCCcH---HHHHHHHhc---ccCceEEEEEee
Confidence            6899998765533   446778888   999999987543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00035  Score=54.13  Aligned_cols=100  Identities=10%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +..++++||-+|+  |.|..++.+++..  ++++++++.+++..+.+++    .|.+.   ++.-.-.+..+.+......
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~---vi~~~~~~~~~~i~~~t~~   95 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHE---VFNHREVNYIDKIKKYVGE   95 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE---EEETTSTTHHHHHHHHHCT
T ss_pred             CCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCccc---ccccccccHHHHhhhhhcc
Confidence            4567889999996  4677788889887  4899999988876666543    46543   2222222232322221124


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+|+||.....    ..++...++   |+|+|.++.=
T Consensus        96 ~g~d~v~d~~g~----~~~~~~~~~---l~~~G~iv~~  126 (174)
T d1yb5a2          96 KGIDIIIEMLAN----VNLSKDLSL---LSHGGRVIVV  126 (174)
T ss_dssp             TCEEEEEESCHH----HHHHHHHHH---EEEEEEEEEC
T ss_pred             CCceEEeecccH----HHHHHHHhc---cCCCCEEEEE
Confidence            679988865442    357777888   9999998873

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.00077  Score=51.57  Aligned_cols=100  Identities=21%  Similarity=0.215  Sum_probs=63.7

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      +...++++|+-+|+|. |..+..+++..  +.+|+++|.+++.++.+++    .|..   .++..+..+..+.+...  .
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~--~   91 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRD--I   91 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH--H
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHh--h
Confidence            4567888999999874 66677788876  4899999999988877654    4543   22322222222222111  2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ..+|.++.+....   ..++...++   |++||.+++=
T Consensus        92 ~g~~~~i~~~~~~---~~~~~~~~~---l~~~G~iv~~  123 (166)
T d1llua2          92 GGAHGVLVTAVSN---SAFGQAIGM---ARRGGTIALV  123 (166)
T ss_dssp             SSEEEEEECCSCH---HHHHHHHTT---EEEEEEEEEC
T ss_pred             cCCcccccccccc---hHHHHHHHH---hcCCcEEEEE
Confidence            3455555554432   346777788   9999999884

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.07  E-value=0.0011  Score=51.36  Aligned_cols=103  Identities=15%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc-h-hhHHHHHHhCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-A-ADSLKALILNG  191 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~-~~~l~~l~~~~  191 (282)
                      +...++++|+-+|||. |..++.+++... ..+|+.+|.+++.++.+++    .|...-+.....| . ........   
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~~---   95 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT---   95 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH---
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHH----hCCCcccCCccchhhhhhhHhhhh---
Confidence            3456788999999997 888899999875 4589999999998877766    3433211111111 1 11111211   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEeC
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVIDN  232 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~dd  232 (282)
                       .+.+|++|-....+   ..++...++   +++| |.+++=.
T Consensus        96 -~~G~d~vie~~G~~---~~~~~a~~~---~~~g~G~~v~vG  130 (174)
T d1e3ia2          96 -AGGVDYSLDCAGTA---QTLKAAVDC---TVLGWGSCTVVG  130 (174)
T ss_dssp             -TSCBSEEEESSCCH---HHHHHHHHT---BCTTTCEEEECC
T ss_pred             -cCCCcEEEEecccc---hHHHHHHHH---hhcCCeEEEecC
Confidence             47899998655433   347778888   9996 9988843

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.93  E-value=0.0012  Score=50.59  Aligned_cols=104  Identities=15%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             HhhcCCCEEEEEcc-c-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGV-Y-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~-G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      ....++++||-+|+ | .|..+..+++... ..+|+++|.+++..+.+++    .|.+   .++..+..+..........
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~   94 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITE   94 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHH----cCCc---eeeccCCcCHHHHHHHHhh
Confidence            35568889999996 3 5566677777654 4689999999988777765    3543   2333333334444333222


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .+.+|+||......   ..++...++   ++|||.+++=.
T Consensus        95 ~~~~d~vid~~g~~---~~~~~a~~~---l~~~G~iv~~G  128 (170)
T d1jvba2          95 SKGVDAVIDLNNSE---KTLSVYPKA---LAKQGKYVMVG  128 (170)
T ss_dssp             TSCEEEEEESCCCH---HHHTTGGGG---EEEEEEEEECC
T ss_pred             cccchhhhcccccc---hHHHhhhhh---cccCCEEEEec
Confidence            46799888655433   335566677   99999998754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.87  E-value=0.0015  Score=49.83  Aligned_cols=101  Identities=23%  Similarity=0.184  Sum_probs=64.3

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      ....++++||=+|+|. |..+..+++..  +++|+++|.+++.++.+++    .|...-+.....|..+.+...     .
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~-----~   91 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK-----V   91 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH-----H
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccc-----c
Confidence            4566888999999885 44566677765  4799999999988877655    454321111112333333333     2


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|.++.+...   ...++...++   ++|||.+++-.
T Consensus        92 ~~~~~~v~~~~~---~~~~~~a~~~---l~~~G~i~~~g  124 (168)
T d1rjwa2          92 GGVHAAVVTAVS---KPAFQSAYNS---IRRGGACVLVG  124 (168)
T ss_dssp             SSEEEEEESSCC---HHHHHHHHHH---EEEEEEEEECC
T ss_pred             CCCceEEeecCC---HHHHHHHHHH---hccCCceEecc
Confidence            345555555542   3457788888   99999998854

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.83  E-value=0.0021  Score=49.40  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=68.5

Q ss_pred             CCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++.+|+-||+| .|..++..|..+.  ++|+.+|.+++.++..+..+..     +++....+.....+.+      ...|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lG--A~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~------~~aD   97 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLG--AQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV------AEAD   97 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH------HTCS
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCC--CEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhh------ccCc
Confidence            57899999999 4777888998884  9999999999988877766542     4666665554443333      5679


Q ss_pred             EEEEcCC---ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          198 FAFVDAE---KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       198 lV~id~~---~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                      +|+.-.-   .....-.-+...+.   +|||.++|==.+-..|.
T Consensus        98 ivI~aalipG~~aP~lIt~~mv~~---Mk~GSVIVDvaidqGG~  138 (168)
T d1pjca1          98 LLIGAVLVPGRRAPILVPASLVEQ---MRTGSVIVDVAVDQGGC  138 (168)
T ss_dssp             EEEECCCCTTSSCCCCBCHHHHTT---SCTTCEEEETTCTTCCS
T ss_pred             EEEEeeecCCcccCeeecHHHHhh---cCCCcEEEEeecCCCCc
Confidence            9987533   11111112344445   89988765434444444

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.58  E-value=0.0038  Score=47.85  Aligned_cols=101  Identities=15%  Similarity=0.192  Sum_probs=64.8

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          117 ILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       117 ~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      ..++++||-+|+|. |..+..+++... ..+++++|.+++.++.+++    .|..   .++..+. +..+...+......
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~-~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD---HVVDARR-DPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS---EEEETTS-CHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhh----cccc---eeecCcc-cHHHHHHHhhCCCC
Confidence            45778999999975 445567777654 4689999999987777665    3332   3333221 22222222222467


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      +|+||......   ..++...++   +++||.+++=.
T Consensus       101 ~d~vid~~g~~---~~~~~a~~~---l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFVGSQ---ATVDYTPYL---LGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESSCCH---HHHHHGGGG---EEEEEEEEECC
T ss_pred             ceEEEEecCcc---hHHHHHHHH---HhCCCEEEEEe
Confidence            99998766533   236677777   99999999843

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.53  E-value=0.0047  Score=47.61  Aligned_cols=104  Identities=14%  Similarity=0.146  Sum_probs=63.6

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc--hhhHHHHHHhCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL--AADSLKALILNG  191 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd--~~~~l~~l~~~~  191 (282)
                      +...++++|+-+|||. |..+..+++... ..+|+++|.+++.++.+++    .|...-++....|  ..+.....    
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~----   93 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEK----   93 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHh----
Confidence            4567889999999985 445666777664 4689999999999988765    3443222212222  11121211    


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCC-CCcEEEEeCC
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIR-VGGIIVIDNV  233 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lk-pgG~lv~dd~  233 (282)
                      ..+.+|.||......   ..++.....   ++ ++|.+++=.+
T Consensus        94 ~~~G~d~vid~~g~~---~~~~~~~~~---~~~~~G~~v~vG~  130 (174)
T d1p0fa2          94 TNGGVDYAVECAGRI---ETMMNALQS---TYCGSGVTVVLGL  130 (174)
T ss_dssp             TTSCBSEEEECSCCH---HHHHHHHHT---BCTTTCEEEECCC
T ss_pred             cCCCCcEEEEcCCCc---hHHHHHHHH---HHHhcCceEEEEE
Confidence            146899999766543   234445444   55 4688887443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.0064  Score=46.33  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=65.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .+..++++|+-+|+|. |..+..+++..  +++++++|.+++..+.+++    .|.+   .++...-.+.....     .
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~~-----~   91 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH-----L   91 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT-----T
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHHh-----c
Confidence            4567889999999873 66778888876  4788999999987766654    4543   22322221211111     4


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      ..+|.+|........   ++...++   ++++|.+++=.
T Consensus        92 ~~~D~vid~~g~~~~---~~~~~~~---l~~~G~iv~~G  124 (168)
T d1uufa2          92 KSFDFILNTVAAPHN---LDDFTTL---LKRDGTMTLVG  124 (168)
T ss_dssp             TCEEEEEECCSSCCC---HHHHHTT---EEEEEEEEECC
T ss_pred             CCCceeeeeeecchh---HHHHHHH---HhcCCEEEEec
Confidence            689999876553332   4566677   99999998843

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0053  Score=47.15  Aligned_cols=104  Identities=15%  Similarity=0.103  Sum_probs=67.0

Q ss_pred             HhhcCCCEEEEEccc--ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+..++++||=.|++  .|..++.+++..  +++|++++.+++..+.+++    .|...   ++..+-.++.+.+.+..+
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~---vi~~~~~d~~~~v~~~t~   94 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQ---VINYREEDLVERLKEITG   94 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSE---EEETTTSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeE---EEECCCCCHHHHHHHHhC
Confidence            345678899988655  566788888876  5899999999988777654    45442   232222233333332222


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ...+|+|+-....+    .++....+   ++++|.+++-...
T Consensus        95 g~g~d~v~d~~g~~----~~~~~~~~---l~~~G~~v~~g~~  129 (179)
T d1qora2          95 GKKVRVVYDSVGRD----TWERSLDC---LQRRGLMVSFGNS  129 (179)
T ss_dssp             TCCEEEEEECSCGG----GHHHHHHT---EEEEEEEEECCCT
T ss_pred             CCCeEEEEeCccHH----HHHHHHHH---HhcCCeeeecccc
Confidence            46889776554433    35667777   9999988775443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.37  E-value=0.005  Score=47.56  Aligned_cols=106  Identities=12%  Similarity=0.096  Sum_probs=63.2

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcch-hhHHHHHHhCCCC
Q 023411          116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-ADSLKALILNGEA  193 (282)
Q Consensus       116 ~~~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~-~~~l~~l~~~~~~  193 (282)
                      +.+++++|+=+|+|. |..++.+++... ..+|+++|.+++.++.|++.    |-..-+.....+. .+.......   .
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~~---g   97 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEMT---G   97 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHHH---T
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHhc---c
Confidence            356788999999984 455677777764 46999999999999888775    3332122122221 111111111   4


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      ..+|.++.......   .++.....  +++++|.+++=.+.
T Consensus        98 ~G~d~vi~~~g~~~---~~~~a~~~--~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          98 NNVGYTFEVIGHLE---TMIDALAS--CHMNYGTSVVVGVP  133 (176)
T ss_dssp             SCCCEEEECSCCHH---HHHHHHTT--SCTTTCEEEECSCC
T ss_pred             ccceEEEEeCCchH---HHHHHHHH--hhcCCeEEEEEEcc
Confidence            68999887766442   22333333  15565888885543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.19  E-value=0.013  Score=44.73  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=62.4

Q ss_pred             HhhcCCCEEEEEccccc-HHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCC
Q 023411          115 VQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA  193 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G-~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~  193 (282)
                      .+.+++++||-+|+|.+ .++..+++... ..+|+++|.+++..+.+++.    |...  .+...+..+...........
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~----Ga~~--~i~~~~~~~~~~~~~~~~~~   96 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV----GATE--CVNPQDYKKPIQEVLTEMSN   96 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSE--EECGGGCSSCHHHHHHHHTT
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh----CCee--EEecCCchhHHHHHHHHHhc
Confidence            44678889999999644 35566666664 57999999999988877654    3331  22222221222111111114


Q ss_pred             CceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEEe
Q 023411          194 SSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVID  231 (282)
Q Consensus       194 ~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~d  231 (282)
                      +.+|+||......   ..++....+   ++++ |.+++-
T Consensus        97 ~G~D~vid~~G~~---~~~~~a~~~---~~~~~g~~~~~  129 (176)
T d2jhfa2          97 GGVDFSFEVIGRL---DTMVTALSC---CQEAYGVSVIV  129 (176)
T ss_dssp             SCBSEEEECSCCH---HHHHHHHHH---BCTTTCEEEEC
T ss_pred             CCCCEEEecCCch---hHHHHHHHH---HhcCCcceEEe
Confidence            6899988766544   334556666   7775 666664

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.19  E-value=0.0033  Score=48.54  Aligned_cols=100  Identities=14%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             HhhcCCCEEEEEc--ccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+..++++||-.|  .|.|..++.+++..  +++++++.-+++..+.++    ..|...   ++.....+....+.+...
T Consensus        21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~~---vi~~~~~~~~~~v~~~t~   91 (183)
T d1pqwa_          21 GRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEY---VGDSRSVDFADEILELTD   91 (183)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSE---EEETTCSTHHHHHHHHTT
T ss_pred             hCCCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----cccccc---cccCCccCHHHHHHHHhC
Confidence            3456778999877  34677788888876  489999888876665544    445442   222222233333333222


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ...+|+||.....    +.++.+.++   |+++|.++.
T Consensus        92 ~~g~d~v~d~~g~----~~~~~~~~~---l~~~G~~v~  122 (183)
T d1pqwa_          92 GYGVDVVLNSLAG----EAIQRGVQI---LAPGGRFIE  122 (183)
T ss_dssp             TCCEEEEEECCCT----HHHHHHHHT---EEEEEEEEE
T ss_pred             CCCEEEEEecccc----hHHHHHHHH---hcCCCEEEE
Confidence            4689999965552    246677788   999999887

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.05  E-value=0.0093  Score=45.49  Aligned_cols=102  Identities=11%  Similarity=0.171  Sum_probs=62.6

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEc-chhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~g-d~~~~l~~l~~~~~  192 (282)
                      .+..++++||=+|+| .|..++.+++... ...|+++|.+++..+.+++    .|...   ++.. +..+..........
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~----lGa~~---~i~~~~~~~~~~~~~~~~~   95 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGATE---CINPQDFSKPIQEVLIEMT   95 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCSE---EECGGGCSSCHHHHHHHHT
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHH----hCCcE---EEeCCchhhHHHHHHHHHc
Confidence            456788899998887 3455677777764 4689999999998877665    34432   2211 11111111111111


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      .+.+|+||-.....   ..++.+..+   +++||.+++
T Consensus        96 ~~g~D~vid~~G~~---~~~~~~~~~---~~~g~~~~~  127 (176)
T d2fzwa2          96 DGGVDYSFECIGNV---KVMRAALEA---CHKGWGVSV  127 (176)
T ss_dssp             TSCBSEEEECSCCH---HHHHHHHHT---BCTTTCEEE
T ss_pred             CCCCcEeeecCCCH---HHHHHHHHh---hcCCceeEE
Confidence            46799999765533   346677777   888866554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.99  E-value=0.03  Score=42.62  Aligned_cols=95  Identities=15%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCC
Q 023411          115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  192 (282)
Q Consensus       115 ~~~~~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~  192 (282)
                      .+..++++||-.|.  +.|..++.+++..  +++|++++.+++..+.+++    .|.+.  .+   |..+.......   
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~--~i---~~~~~~~~~~~---   88 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE--AA---TYAEVPERAKA---   88 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE--EE---EGGGHHHHHHH---
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccce--ee---ehhhhhhhhhc---
Confidence            45678889998884  3467778888886  4899999999887766654    45442  11   22232222221   


Q ss_pred             CCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          193 ASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       193 ~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ...+|+||-... .    .++...++   |+|+|.++.-
T Consensus        89 ~~g~D~v~d~~G-~----~~~~~~~~---l~~~G~~v~~  119 (171)
T d1iz0a2          89 WGGLDLVLEVRG-K----EVEESLGL---LAHGGRLVYI  119 (171)
T ss_dssp             TTSEEEEEECSC-T----THHHHHTT---EEEEEEEEEC
T ss_pred             cccccccccccc-h----hHHHHHHH---HhcCCcEEEE
Confidence            467999875332 2    24566677   9999998874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.89  E-value=0.014  Score=44.22  Aligned_cols=90  Identities=20%  Similarity=0.206  Sum_probs=56.3

Q ss_pred             EEEEEcccc-cHH-HHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          122 RCIEVGVYT-GYS-SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       122 ~VLEIG~G~-G~~-t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +|+=||||. |.+ +..+.+. ....+|+++|.+++.++.+++.    +.-+   ....+..+. .       ....|+|
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~~-~-------~~~~dlI   66 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAKV-E-------DFSPDFV   66 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGGG-G-------GTCCSEE
T ss_pred             EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhhh-h-------ccccccc
Confidence            678899874 333 2233332 2246899999999888776653    3322   111122111 1       2467999


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++..+.....+.++.+.+.   ++++. +++|
T Consensus        67 ila~p~~~~~~vl~~l~~~---~~~~~-ii~d   94 (171)
T d2g5ca2          67 MLSSPVRTFREIAKKLSYI---LSEDA-TVTD   94 (171)
T ss_dssp             EECSCHHHHHHHHHHHHHH---SCTTC-EEEE
T ss_pred             cccCCchhhhhhhhhhhcc---ccccc-cccc
Confidence            9998888888888888888   87764 4554

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.62  E-value=0.016  Score=44.51  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             HHHhhcCCCEEEEEcccc--cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhC
Q 023411          113 MLVQILGAQRCIEVGVYT--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  190 (282)
Q Consensus       113 ~l~~~~~~~~VLEIG~G~--G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~  190 (282)
                      ...+.+++++||-.|++.  |..++.+++..  +++|+++..+++..+.+++    .|...-+.....+..+......  
T Consensus        23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~--   94 (182)
T d1v3va2          23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA--   94 (182)
T ss_dssp             TTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH--
T ss_pred             HHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh--
Confidence            344567889999877754  55677788876  4899999988876655444    4544212211122222221111  


Q ss_pred             CCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          191 GEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       191 ~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                       ....+|+||-....    +.++...++   |+++|.++.-
T Consensus        95 -~~~Gvd~v~D~vG~----~~~~~~~~~---l~~~G~~v~~  127 (182)
T d1v3va2          95 -SPDGYDCYFDNVGG----EFLNTVLSQ---MKDFGKIAIC  127 (182)
T ss_dssp             -CTTCEEEEEESSCH----HHHHHHGGG---EEEEEEEEEC
T ss_pred             -hcCCCceeEEecCc----hhhhhhhhh---ccCCCeEEee
Confidence             14679998865442    356778888   9999998874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.55  E-value=0.011  Score=45.85  Aligned_cols=108  Identities=10%  Similarity=0.074  Sum_probs=65.3

Q ss_pred             HhhcCCCEEEEEcc--c-ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHH---H
Q 023411          115 VQILGAQRCIEVGV--Y-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL---I  188 (282)
Q Consensus       115 ~~~~~~~~VLEIG~--G-~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l---~  188 (282)
                      .+..++.+||=+..  | .|..++.+++..  +++++++--+++..+...+.+++.|.+.-+..-..+..+..+..   .
T Consensus        24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             hCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHH
Confidence            34556677877732  3 466788889887  48998887677777777777777886642222112222222211   1


Q ss_pred             hCCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeC
Q 023411          189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDN  232 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd  232 (282)
                      .. ....+|+||-... .   +.++...++   |+++|.+|.-.
T Consensus       102 ~~-~g~~vdvv~D~vg-~---~~~~~~~~~---l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQ-SGGEAKLALNCVG-G---KSSTGIARK---LNNNGLMLTYG  137 (189)
T ss_dssp             HH-HTCCEEEEEESSC-H---HHHHHHHHT---SCTTCEEEECC
T ss_pred             hh-ccCCceEEEECCC-c---chhhhhhhh---hcCCcEEEEEC
Confidence            11 1367899884332 2   235566777   99999998743

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.38  E-value=0.032  Score=42.33  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=59.9

Q ss_pred             HhhcCCCEEEEEcccccH-HHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcc-h-hhHHHHHHhCC
Q 023411          115 VQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-A-ADSLKALILNG  191 (282)
Q Consensus       115 ~~~~~~~~VLEIG~G~G~-~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd-~-~~~l~~l~~~~  191 (282)
                      ++.+++++|+-+|+|.+. .+..++.... ..+|+++|.+++.++.+++    .|-++-+.....+ . .+......   
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~----~GAd~~in~~~~~~~~~~~~~~~~---   95 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGATDFVNPNDHSEPISQVLSKMT---   95 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCCEEECGGGCSSCHHHHHHHHH---
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH----cCCcEEEcCCCcchhHHHHHHhhc---
Confidence            456788899999998744 4555666554 5789999999998877665    4533212111111 1 11111111   


Q ss_pred             CCCceeEEEEcCCccccHHHHHHHHHhhcCCCCC-cEEEE
Q 023411          192 EASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVG-GIIVI  230 (282)
Q Consensus       192 ~~~~fDlV~id~~~~~~~~~l~~~~~~~~~Lkpg-G~lv~  230 (282)
                       ...+|+||-.....   ..++....+   +++| |++++
T Consensus        96 -~~G~d~vid~~G~~---~~~~~a~~~---~~~g~~~~~~  128 (175)
T d1cdoa2          96 -NGGVDFSLECVGNV---GVMRNALES---CLKGWGVSVL  128 (175)
T ss_dssp             -TSCBSEEEECSCCH---HHHHHHHHT---BCTTTCEEEE
T ss_pred             -cCCcceeeeecCCH---HHHHHHHHH---hhCCCcceeE
Confidence             46799998766543   234555555   6665 55555

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.36  E-value=0.019  Score=47.75  Aligned_cols=96  Identities=15%  Similarity=0.023  Sum_probs=61.9

Q ss_pred             EEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +|||+-||.|.++.-+-++   +. .+.++|+++.+.+.-+.|+.       -.++.+|..+.....     -...|+++
T Consensus         2 k~~~lF~G~Gg~~~gl~~a---G~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~-----~~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDE-----FPKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHH---TCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGG-----SCCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhH-----cccccEEe
Confidence            7999999999998887765   23 46699999988777666542       356788887653321     35789998


Q ss_pred             EcCC------------ccc-cHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          201 VDAE------------KRM-YQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       201 id~~------------~~~-~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ...+            ..+ ....+-.+.++...++|. +++++||
T Consensus        67 ~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk-~~~lENV  111 (324)
T d1dcta_          67 GGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENV  111 (324)
T ss_dssp             ECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS-EEEEEEE
T ss_pred             ecccccccccccccccccccccchHHHHHHHHHhhCCc-eeecccc
Confidence            6533            111 112222222222227885 8899998

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.36  E-value=0.01  Score=48.38  Aligned_cols=107  Identities=13%  Similarity=0.108  Sum_probs=74.6

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC---CC------------------------------------CCEEEEEecCccHHHH
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL---PE------------------------------------SGCLVACERDARSLEV  159 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~---~~------------------------------------~~~v~~iD~s~~~~~~  159 (282)
                      ++..++|--||+|.+.+..+...   ++                                    ..++++.|+++++++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45579999999999988766532   11                                    1246788888888888


Q ss_pred             H---HHHHHHhCCCCcEEEEEcchhhHHH--HHHhCCCCCceeEEEEcCCcc------------ccHHHHHHHHHhhcCC
Q 023411          160 A---KKYYERAGVSHKVKIKHGLAADSLK--ALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLLLQI  222 (282)
Q Consensus       160 a---~~~~~~~g~~~~v~~~~gd~~~~l~--~l~~~~~~~~fDlV~id~~~~------------~~~~~l~~~~~~~~~L  222 (282)
                      |   ++|++.+|+.+.+++.+.|+.+..+  ....   ...+++|+++.+..            .+..+...+.+.   +
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~---~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~---~  203 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLA---GSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASA---L  203 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHT---TCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHH---S
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccC---CCCCCEEEeCCCccccccccccchHHHHHHHHHHHHcc---C
Confidence            8   5689999999999999999865322  2211   35678999987722            134455566666   7


Q ss_pred             CCCcEEEEe
Q 023411          223 RVGGIIVID  231 (282)
Q Consensus       223 kpgG~lv~d  231 (282)
                      ....++++.
T Consensus       204 p~~s~~~it  212 (249)
T d1o9ga_         204 PAHAVIAVT  212 (249)
T ss_dssp             CTTCEEEEE
T ss_pred             CCCcEEEEe
Confidence            666666664

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.33  E-value=0.019  Score=46.12  Aligned_cols=53  Identities=11%  Similarity=0.225  Sum_probs=42.1

Q ss_pred             HHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHH
Q 023411          110 LLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  165 (282)
Q Consensus       110 ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~  165 (282)
                      ++..++..  .++..|||.-+|+|..+....+ +  +-+.+|+|++++.++.|+++++
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~-~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKK-L--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHH-T--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHH-c--CCeEEEEeCCHHHHHHHHHHHc
Confidence            45555443  5778999999999987776665 3  3589999999999999999876

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.95  E-value=0.047  Score=39.46  Aligned_cols=92  Identities=17%  Similarity=0.143  Sum_probs=56.7

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCceeE
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~fDl  198 (282)
                      +|+=+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.+       .+.+++||+.+.  +...   + -...|.
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~---~-i~~a~~   68 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA---G-IEDADM   68 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT---T-TTTCSE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc---C-hhhhhh
Confidence            5666665  788888887763 2468999999999877655432       267899998763  3222   1 367888


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      +++-.......-......+.   +.+.-+++
T Consensus        69 vv~~t~~d~~N~~~~~~~k~---~~~~~iI~   96 (132)
T d1lssa_          69 YIAVTGKEEVNLMSSLLAKS---YGINKTIA   96 (132)
T ss_dssp             EEECCSCHHHHHHHHHHHHH---TTCCCEEE
T ss_pred             hcccCCcHHHHHHHHHHHHH---cCCceEEE
Confidence            87744433222233333344   66665543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.071  Score=40.97  Aligned_cols=103  Identities=16%  Similarity=0.130  Sum_probs=62.2

Q ss_pred             HHhhcCC--CEEEEEc--ccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHh
Q 023411          114 LVQILGA--QRCIEVG--VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  189 (282)
Q Consensus       114 l~~~~~~--~~VLEIG--~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~  189 (282)
                      ..+.+++  +.||-.|  .|.|..++.+++.++ ...|+++..+++.....   .+..|.+.-+.....+..+.+.... 
T Consensus        23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l---~~~~gad~vi~~~~~~~~~~~~~~~-   97 (187)
T d1vj1a2          23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFL---TSELGFDAAVNYKTGNVAEQLREAC-   97 (187)
T ss_dssp             HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHH---HHHSCCSEEEETTSSCHHHHHHHHC-
T ss_pred             HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhh---hhcccceEEeeccchhHHHHHHHHh-
Confidence            3344444  6799876  457889999999885 34677777776543332   2334444222332333333344332 


Q ss_pred             CCCCCceeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          190 NGEASSYDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       190 ~~~~~~fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                         .+.+|+||-...    .+.++...++   |+++|.++.=
T Consensus        98 ---~~GvDvv~D~vG----g~~~~~~~~~---l~~~G~iv~~  129 (187)
T d1vj1a2          98 ---PGGVDVYFDNVG----GDISNTVISQ---MNENSHIILC  129 (187)
T ss_dssp             ---TTCEEEEEESSC----HHHHHHHHTT---EEEEEEEEEC
T ss_pred             ---ccCceEEEecCC----chhHHHHhhh---ccccccEEEe
Confidence               467999984443    2346677777   9999998863

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.68  E-value=0.045  Score=44.39  Aligned_cols=56  Identities=9%  Similarity=-0.002  Sum_probs=44.8

Q ss_pred             HHHHHHHhh--cCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHh
Q 023411          109 QLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  167 (282)
Q Consensus       109 ~ll~~l~~~--~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~  167 (282)
                      .++..++..  .+++.|||--+|+|..+.+....   +-+.+|+|++++..+.|+++++..
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            345555543  47889999999999987777665   348999999999999999999864

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.48  E-value=0.022  Score=47.26  Aligned_cols=54  Identities=7%  Similarity=0.013  Sum_probs=42.3

Q ss_pred             HHHHHHh--hcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHH
Q 023411          110 LLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  166 (282)
Q Consensus       110 ll~~l~~--~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~  166 (282)
                      ++..++.  ..++..|||.-||+|..+..... +  +-+.+|+|++++.++.|++++..
T Consensus       239 L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~-l--gR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         239 LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAER-E--SRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHCCTTCEEEETTCTTCHHHHHHHH-T--TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHhhhhcccCCCEEEecCCCCcHHHHHHHH-c--CCcEEEEeCCHHHHHHHHHHHHh
Confidence            4444443  35788999999999987776655 3  35899999999999999988764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.48  E-value=0.044  Score=42.24  Aligned_cols=45  Identities=22%  Similarity=0.240  Sum_probs=37.5

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHH
Q 023411          118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYY  164 (282)
Q Consensus       118 ~~~~~VLEIG~G~-G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~  164 (282)
                      -+|.+|+-||+|. |..+...|..++  ++|+.+|.+++.++..++..
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lG--A~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHHTT
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcC--CEEEEEeccHHHHHHHHHhh
Confidence            4678999999995 667888888884  89999999999888777653

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.032  Score=46.77  Aligned_cols=104  Identities=15%  Similarity=0.108  Sum_probs=62.3

Q ss_pred             CCEEEEEcccccHHHHHHHHHCCCCCE-EEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +.+|+|+.||.|.++..+-.+.- +.+ +.++|+++.+++.-+.|+.      ...++.+|..+.......   ...+|+
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~---~~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD---RLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH---HHCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcC---CCCccE
Confidence            45899999999999887755421 233 6799999988877666542      245667787664322211   246899


Q ss_pred             EEEcCCcc------------c-cHHHHHHHHHhhcCC--CCCcEEEEeCCC
Q 023411          199 AFVDAEKR------------M-YQEYFELLLQLLLQI--RVGGIIVIDNVL  234 (282)
Q Consensus       199 V~id~~~~------------~-~~~~l~~~~~~~~~L--kpgG~lv~dd~~  234 (282)
                      ++...+..            + ....+-.+.++...+  +|. +++++||-
T Consensus        72 l~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~  121 (343)
T d1g55a_          72 ILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVK  121 (343)
T ss_dssp             EEECCC------------------CHHHHHHHHGGGCSSCCS-EEEEEEET
T ss_pred             EEeecccccccccccccccccccccccchhhhhHhhhcCCCc-eeeeeccC
Confidence            98653310            1 111223333332224  565 78999985

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.12  E-value=0.044  Score=47.63  Aligned_cols=53  Identities=15%  Similarity=0.107  Sum_probs=44.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHHHHHHHHHHHhCC
Q 023411          117 ILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGV  169 (282)
Q Consensus       117 ~~~~~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~g~  169 (282)
                      ..+...++|||+-.|.++..++...+. ..+|+++|+++...+..+++++.+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            456679999999999999988876542 36999999999999999999987654

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=93.90  E-value=0.41  Score=39.52  Aligned_cols=109  Identities=16%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCC--CcEEEEEcchhhH-HHHHHhCC-CCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADS-LKALILNG-EAS  194 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~--~~v~~~~gd~~~~-l~~l~~~~-~~~  194 (282)
                      ..+.|+.+|||.=  |...--..+.+.+++=||. |+.++.-++.+...+..  .+..++..|..+. ...+...+ +.+
T Consensus        89 g~~qvV~LGaGlD--Tr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          89 GIRQFVILASGLD--SRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             TCCEEEEETCTTC--CHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCcccC--ChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence            4567888998654  4433222344568888885 88888888888877653  4567777777653 34444333 223


Q ss_pred             ceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          195 SYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       195 ~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      ..=+++..+.     .+.....++.+..+   ..||+.|++|-+
T Consensus       166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~---~~~GS~l~~d~~  206 (297)
T d2uyoa1         166 ARTAWLAEGLLMYLPATAQDGLFTEIGGL---SAVGSRIAVETS  206 (297)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHT---CCTTCEEEEECC
T ss_pred             CCEEEEEccccccCCHHHHHHHHHHHHHh---CCCCCEEEEEec
Confidence            3334555554     33355567777776   899999999855

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=93.81  E-value=0.019  Score=46.10  Aligned_cols=51  Identities=20%  Similarity=0.216  Sum_probs=38.1

Q ss_pred             EEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc----------ccH-------HHHHHHHHhhcCCCCCcEEEEe
Q 023411          174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKR----------MYQ-------EYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       174 ~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~----------~~~-------~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++++||..+.+..++    ++++|+|+.|++..          ...       ..++++.++   |+|||.+++.
T Consensus         6 ~i~~gDcle~l~~lp----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rv---Lk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDK---LDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhc---cccCcccccc
Confidence            589999999988875    68999999998731          122       244556666   9999988764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.46  E-value=0.03  Score=45.52  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=39.8

Q ss_pred             cEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc----------cc----HHHHHHHHHhhcCCCCCcEEEEe
Q 023411          172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR----------MY----QEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       172 ~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~----------~~----~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      +-.++.||..+.+..++    ++++|+||.|++..          .+    ...++.+.++   |+|+|.+++.
T Consensus         4 ~~~~~~~D~le~l~~l~----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rv---Lk~~G~~~~~   70 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKLP----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERV---LSPTGSIAIF   70 (279)
T ss_dssp             EEEEEECCHHHHHHTSC----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             cceEEechHHHHHhhCc----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHH---hCCCccEEEe
Confidence            35688899999888774    68999999998731          22    3345566677   9999988874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.45  E-value=0.21  Score=37.12  Aligned_cols=86  Identities=14%  Similarity=0.104  Sum_probs=52.9

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEE
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  200 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~  200 (282)
                      +|.=||+|  ..+..+++.+. .+.+|+++|.+++..+.+++    .+.-+   ... +..+.         -...|+||
T Consensus         2 kI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~-~~~~~---------~~~~DiIi   62 (165)
T d2f1ka2           2 KIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD---EAG-QDLSL---------LQTAKIIF   62 (165)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS---EEE-SCGGG---------GTTCSEEE
T ss_pred             EEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc---eee-eeccc---------cccccccc
Confidence            56667775  44444444432 24689999999887766544    33322   111 11121         25679999


Q ss_pred             EcCCccccHHHHHHHHHhhcCCCCCcEEE
Q 023411          201 VDAEKRMYQEYFELLLQLLLQIRVGGIIV  229 (282)
Q Consensus       201 id~~~~~~~~~l~~~~~~~~~LkpgG~lv  229 (282)
                      +..+.......++.+.+.   ++++.+++
T Consensus        63 lavp~~~~~~vl~~l~~~---l~~~~iv~   88 (165)
T d2f1ka2          63 LCTPIQLILPTLEKLIPH---LSPTAIVT   88 (165)
T ss_dssp             ECSCHHHHHHHHHHHGGG---SCTTCEEE
T ss_pred             ccCcHhhhhhhhhhhhhh---ccccccee
Confidence            877766677778888777   77776553

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.22  Score=40.10  Aligned_cols=84  Identities=17%  Similarity=0.170  Sum_probs=61.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHH----HHhC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKA----LILN  190 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~----l~~~  190 (282)
                      .+++.+|-.|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+.++..+...++.++++|..+.  ...    ....
T Consensus         8 lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            46788998887655 566666655 236899999999999999988888888777899999988652  111    2111


Q ss_pred             CCCCceeEEEEcCC
Q 023411          191 GEASSYDFAFVDAE  204 (282)
Q Consensus       191 ~~~~~fDlV~id~~  204 (282)
                        .+.+|+++..+.
T Consensus        87 --~g~iD~lVnnAg   98 (257)
T d1xg5a_          87 --HSGVDICINNAG   98 (257)
T ss_dssp             --HCCCSEEEECCC
T ss_pred             --cCCCCEEEeccc
Confidence              368999987654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=93.39  E-value=0.13  Score=42.79  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCCCCC-EEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      .+.+|||+-||.|+++..+-++   +. .+.++|+++.+++.-+.|+..        ..++|..+.....     -..+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a---G~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~-----~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKT-----IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGG-----SCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhh-----cceee
Confidence            4569999999999999887664   23 467899999999888887742        1257776543322     35789


Q ss_pred             EEEEcCC---------------c--cccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          198 FAFVDAE---------------K--RMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       198 lV~id~~---------------~--~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      +++...+               .  ..+..+++.+..    ++|. +++++||-
T Consensus        74 ll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~----~kP~-~~~lENV~  122 (327)
T d2c7pa1          74 ILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVRE----KKPK-VVFMENVK  122 (327)
T ss_dssp             EEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHH----HCCS-EEEEEEEG
T ss_pred             eeecccccchhhhhhhhcCCcccchhHHHHHHHHHhc----cCCc-EEecccch
Confidence            9986532               0  113334444433    6886 88999983

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.84  E-value=0.057  Score=41.35  Aligned_cols=98  Identities=12%  Similarity=0.127  Sum_probs=59.9

Q ss_pred             cCCCEEEEEccc--ccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCc
Q 023411          118 LGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS  195 (282)
Q Consensus       118 ~~~~~VLEIG~G--~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~  195 (282)
                      .++++||-.|.+  .|..++.+++..  +++|+++.-+++-.+.+++    .|.+.-+.. ..+.    .........+.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~----lGa~~vi~~-~~~~----~~~~~~~~~~g   98 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKEVLAR-EDVM----AERIRPLDKQR   98 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSEEEEC-C-------------CCSCC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHh----cccceeeec-chhH----HHHHHHhhccC
Confidence            456789988754  456778888886  5899999998888776654    344421221 1111    11111112578


Q ss_pred             eeEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          196 YDFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       196 fDlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      +|+||-.....    .++...++   |++||.++.=..
T Consensus        99 vD~vid~vgg~----~~~~~l~~---l~~~Griv~~G~  129 (176)
T d1xa0a2          99 WAAAVDPVGGR----TLATVLSR---MRYGGAVAVSGL  129 (176)
T ss_dssp             EEEEEECSTTT----THHHHHHT---EEEEEEEEECSC
T ss_pred             cCEEEEcCCch----hHHHHHHH---hCCCceEEEeec
Confidence            99877544433    26677777   999999987444

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.77  E-value=0.25  Score=35.13  Aligned_cols=89  Identities=13%  Similarity=-0.000  Sum_probs=56.5

Q ss_pred             ccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc
Q 023411          128 VYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM  207 (282)
Q Consensus       128 ~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~  207 (282)
                      ||+|..+..+++.+. +..++.+|.+++..+..+.    .    .+.++.||+.+. ..+..-+ -++.+.+++......
T Consensus         6 ~G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~----~----~~~~i~Gd~~~~-~~L~~a~-i~~A~~vi~~~~~d~   74 (129)
T d2fy8a1           6 CGWSESTLECLRELR-GSEVFVLAEDENVRKKVLR----S----GANFVHGDPTRV-SDLEKAN-VRGARAVIVNLESDS   74 (129)
T ss_dssp             ESCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH----T----TCEEEESCTTSH-HHHHHTT-CTTCSEEEECCSSHH
T ss_pred             ECCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh----c----CccccccccCCH-HHHHHhh-hhcCcEEEEeccchh
Confidence            567889999999885 5568899999997665432    2    378899998653 2222212 467788887655333


Q ss_pred             cHHHHHHHHHhhcCCCCCcEEEE
Q 023411          208 YQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       208 ~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      ..-..-...+.   +.|...+++
T Consensus        75 ~n~~~~~~~r~---~~~~~~iia   94 (129)
T d2fy8a1          75 ETIHCILGIRK---IDESVRIIA   94 (129)
T ss_dssp             HHHHHHHHHHH---HCSSSCEEE
T ss_pred             hhHHHHHHHHH---HCCCceEEE
Confidence            22223333344   688876665

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=92.31  E-value=0.17  Score=37.95  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             CEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHh--CCCCcEEEEEcchhhHHHHHHhCCCCCcee
Q 023411          121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYD  197 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~--g~~~~v~~~~gd~~~~l~~l~~~~~~~~fD  197 (282)
                      ++|-=||+|.-+.  .++..+. .+.+|+.+|.+++.++..++.-...  ..................+.     -...|
T Consensus         2 k~iaIiGaG~~G~--~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGH--AFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA-----VKDAD   74 (184)
T ss_dssp             CEEEEECCSHHHH--HHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH-----HTTCS
T ss_pred             CEEEEECccHHHH--HHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH-----hcCCC
Confidence            4677788865443  3333332 1468999999988776655432110  00000111111111111222     15689


Q ss_pred             EEEEcCCccccHHHHHHHHHhhcCCCCCcEEEE
Q 023411          198 FAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       198 lV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +||+-.........++.+.+.   ++++.++++
T Consensus        75 ~iii~v~~~~~~~~~~~i~~~---l~~~~~iv~  104 (184)
T d1bg6a2          75 VILIVVPAIHHASIAANIASY---ISEGQLIIL  104 (184)
T ss_dssp             EEEECSCGGGHHHHHHHHGGG---CCTTCEEEE
T ss_pred             EEEEEEchhHHHHHHHHhhhc---cCCCCEEEE
Confidence            999987767777888889888   999987765

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=92.24  E-value=0.047  Score=45.05  Aligned_cols=52  Identities=12%  Similarity=0.211  Sum_probs=38.9

Q ss_pred             EEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcc-------------c----cHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------M----YQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       173 v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~-------------~----~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      -++++||..+.+..+.    ++++|+|++|++..             +    ....+..+.++   |+|+|.++++
T Consensus        13 ~~l~~GD~le~l~~l~----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rv---Lk~~G~i~i~   81 (320)
T d1booa_          13 GSMYIGDSLELLESFP----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKK---LKPDGSFVVD   81 (320)
T ss_dssp             EEEEESCHHHHGGGSC----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHH---EEEEEEEEEE
T ss_pred             CEEEehhHHHHHhhCc----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHh---CcccCccccc
Confidence            4899999998887764    68999999997721             1    22345556666   9999998874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.33  Score=35.53  Aligned_cols=97  Identities=12%  Similarity=0.060  Sum_probs=56.8

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCceeE
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~fDl  198 (282)
                      +|+=+|  .|..+..+++.+. .+..++.+|.+++......+...    ...+.++.||+.+.  +...   + -+..|.
T Consensus         5 HiII~G--~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~L~~a---~-i~~a~~   74 (153)
T d1id1a_           5 HFIVCG--HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA---G-IDRCRA   74 (153)
T ss_dssp             CEEEEC--CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH---T-TTTCSE
T ss_pred             EEEEEC--CCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh----cCCcEEEEccCcchHHHHHh---c-cccCCE
Confidence            455555  4677777777653 24679999999876443333332    12489999998763  3332   1 467888


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |++........-..-...+-   +.|...+++.
T Consensus        75 vi~~~~~d~~n~~~~~~~r~---~~~~~~iia~  104 (153)
T d1id1a_          75 ILALSDNDADNAFVVLSAKD---MSSDVKTVLA  104 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHH---HTSSSCEEEE
T ss_pred             EEEccccHHHHHHHHHHHHH---hCCCCceEEE
Confidence            88765533222222222333   5677666663

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.46  Score=38.35  Aligned_cols=81  Identities=20%  Similarity=0.063  Sum_probs=55.3

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC--CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--H----HHHHhCC
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILNG  191 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~l~~~~  191 (282)
                      +++|.=|--|++.++..+++.+-  .+.+|+.++.+++.++.+.+.++..+.  ++.++.+|..+.  .    ..+.++ 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~-   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE-   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh-
Confidence            45674454445566666666542  157999999999999988888887664  478899987652  1    122221 


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                       .+++|+++.++.
T Consensus        79 -~g~iDiLVnNAG   90 (275)
T d1wmaa1          79 -YGGLDVLVNNAG   90 (275)
T ss_dssp             -HSSEEEEEECCC
T ss_pred             -cCCcEEEEEcCC
Confidence             368999998765

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.93  E-value=0.72  Score=36.92  Aligned_cols=85  Identities=19%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .++.+|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+...+...++..+.+|..+.  ...+...-  .-
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5678888887654 555555544 236899999999999988888777766666788999987542  12211110  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      ++.|+++.++.
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            68999987643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=89.62  E-value=0.19  Score=35.92  Aligned_cols=91  Identities=14%  Similarity=0.101  Sum_probs=53.0

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhh--HHHHHHhCCCCCceeE
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASSYDF  198 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~--~l~~l~~~~~~~~fDl  198 (282)
                      +++=+|  .|..+..+++.+. .+..|+.+|.+++.++.++.    .+    ...+.||+.+  .+....    -...|.
T Consensus         2 ~~iIiG--~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a~----i~~a~~   67 (134)
T d2hmva1           2 QFAVIG--LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLG----IRNFEY   67 (134)
T ss_dssp             CEEEEC--CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHHT----GGGCSE
T ss_pred             EEEEEC--CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC----CcceeeecccchhhhccC----CccccE
Confidence            344455  4777777777663 24689999999988765532    12    3567788765  333321    356788


Q ss_pred             EEEcCCccccHH-HHHHHHHhhcCCCCCcEEEE
Q 023411          199 AFVDAEKRMYQE-YFELLLQLLLQIRVGGIIVI  230 (282)
Q Consensus       199 V~id~~~~~~~~-~l~~~~~~~~~LkpgG~lv~  230 (282)
                      +++......... ....+.+.    .+...+++
T Consensus        68 vi~~~~~~~~~~~~~~~~~~~----~~~~~iia   96 (134)
T d2hmva1          68 VIVAIGANIQASTLTTLLLKE----LDIPNIWV   96 (134)
T ss_dssp             EEECCCSCHHHHHHHHHHHHH----TTCSEEEE
T ss_pred             EEEEcCchHHhHHHHHHHHHH----cCCCcEEe
Confidence            887655332222 33334443    45555554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.30  E-value=3  Score=32.85  Aligned_cols=81  Identities=12%  Similarity=0.114  Sum_probs=57.4

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--H----HHHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--L----KALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l----~~l~~~~  191 (282)
                      ..+.+|-.|.+ +.++..+++.+. .+++|+.++.+++.++.+.+.++..+.  ++.++.+|..+.  .    ...... 
T Consensus         9 enKvalITGas-~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~-   84 (251)
T d2c07a1           9 ENKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTE-   84 (251)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHh-
Confidence            46677877865 457777777764 357999999999999888888876553  588999988652  1    122222 


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                       .+++|+++..+.
T Consensus        85 -~g~iDilvnnag   96 (251)
T d2c07a1          85 -HKNVDILVNNAG   96 (251)
T ss_dssp             -CSCCCEEEECCC
T ss_pred             -cCCceeeeeccc
Confidence             378999887644

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=88.65  E-value=0.21  Score=42.51  Aligned_cols=46  Identities=17%  Similarity=0.074  Sum_probs=35.2

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC------CCCEEEEEecCccHHHHHHHHHH
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP------ESGCLVACERDARSLEVAKKYYE  165 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~------~~~~v~~iD~s~~~~~~a~~~~~  165 (282)
                      .-+|+|+|+|+|..+.-+++.+.      ...+++.+|.|+...+..++.+.
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            34799999999999888776543      23579999999987666665554

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.71  Score=36.80  Aligned_cols=85  Identities=13%  Similarity=0.018  Sum_probs=56.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      .++.+|-.|++. .++..+++.+ ..+++|+.+|.+++.++.+.+.+.......++.++.+|..+.  ...+.+.-  ..
T Consensus         2 ~GKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            457888888654 4666666665 346899999999998887777765543345789999997652  11211110  12


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +++|+++..+.
T Consensus        81 G~iDilVnnAg   91 (254)
T d2gdza1          81 GRLDILVNNAG   91 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCcCeeccccc
Confidence            68999988765

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.09  E-value=0.82  Score=36.85  Aligned_cols=85  Identities=19%  Similarity=0.240  Sum_probs=58.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      +++++|-.|++.| ++..+++.+. .+++|+.+|.+++.++.+.+.+...+.. .++.++.+|..+.  ...+.+.-  .
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5678887786654 5666665552 3689999999999999888888887654 4689999987552  11211110  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+++|+++..+.
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence            268899987643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=87.98  E-value=2.4  Score=33.47  Aligned_cols=77  Identities=14%  Similarity=0.096  Sum_probs=53.2

Q ss_pred             EEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH------HHHHHhCCCCCc
Q 023411          123 CIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILNGEASS  195 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~l~~~~~~~~  195 (282)
                      +|-.|++ +.++..+++.+ ..+++|+.+|.+++.++.+.+.++..+.  ++.++.+|..+.      .....+.  -++
T Consensus         4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~--~g~   78 (255)
T d1gega_           4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKT--LGG   78 (255)
T ss_dssp             EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH--TTC
T ss_pred             EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH--hCC
Confidence            4656755 55666666665 2368999999999999888888887663  588899998652      1222221  378


Q ss_pred             eeEEEEcCC
Q 023411          196 YDFAFVDAE  204 (282)
Q Consensus       196 fDlV~id~~  204 (282)
                      +|+++..+.
T Consensus        79 iDilVnnAG   87 (255)
T d1gega_          79 FDVIVNNAG   87 (255)
T ss_dssp             CCEEEECCC
T ss_pred             ccEEEeccc
Confidence            999987643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.97  E-value=1.4  Score=33.18  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=50.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchh--hHHHHHHhCCCCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA--DSLKALILNGEAS  194 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~--~~l~~l~~~~~~~  194 (282)
                      .++++||=.|++ |..+..+++.+ ..+++|+.++.+++.++.+.+.+.....   +.+...|..  +.....     -+
T Consensus        21 l~gK~vlItGas-gGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~-----~~   91 (191)
T d1luaa1          21 VKGKKAVVLAGT-GPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK---VNVTAAETADDASRAEA-----VK   91 (191)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT---CCCEEEECCSHHHHHHH-----TT
T ss_pred             CCCCEEEEECCC-HHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc---hhhhhhhcccHHHHHHH-----hc
Confidence            478899988864 44555555444 2368999999999988888777765432   333434332  233333     36


Q ss_pred             ceeEEEEcCC
Q 023411          195 SYDFAFVDAE  204 (282)
Q Consensus       195 ~fDlV~id~~  204 (282)
                      ..|++|..+.
T Consensus        92 ~iDilin~Ag  101 (191)
T d1luaa1          92 GAHFVFTAGA  101 (191)
T ss_dssp             TCSEEEECCC
T ss_pred             CcCeeeecCc
Confidence            7899998755

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=87.08  E-value=1.1  Score=35.71  Aligned_cols=82  Identities=21%  Similarity=0.289  Sum_probs=56.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH------HHHHHhC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALILN  190 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~l~~~  190 (282)
                      ..++.+|-.|.+. .++..+++.+. .+++|+.+|.+++.++.+.+.++..+.  ++..+.+|..+.      .......
T Consensus         3 L~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           3 FNGKVCLVTGAGG-NIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3577888788654 45555555542 368999999999999988888876653  588889887542      1222211


Q ss_pred             CCCCceeEEEEcCC
Q 023411          191 GEASSYDFAFVDAE  204 (282)
Q Consensus       191 ~~~~~fDlV~id~~  204 (282)
                        -+..|+++..+.
T Consensus        80 --~g~iDilVnnaG   91 (260)
T d1zema1          80 --FGKIDFLFNNAG   91 (260)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --hCCCCeehhhhc
Confidence              268999887643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.94  E-value=3.4  Score=32.38  Aligned_cols=83  Identities=14%  Similarity=0.042  Sum_probs=56.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--HHHHhC--CCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILN--GEA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~~l~~~--~~~  193 (282)
                      .++.+|-.|++.| ++..++..+ ..+.+|+.+|.+++.++...+.++..+  .++.++.+|..+.-  ..+.+.  ...
T Consensus         6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            4677887787655 455555544 236899999999999988888887655  35889999986531  111110  014


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +..|+++..+.
T Consensus        83 g~idilinnag   93 (244)
T d1yb1a_          83 GDVSILVNNAG   93 (244)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCceeEeecc
Confidence            67999987654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=86.60  E-value=0.22  Score=37.46  Aligned_cols=98  Identities=15%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             CCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      ++..||--|+  |-|..++.+|+.+  +++|+++.-+++-.+.+++    .|.+. +  +.  ..+...........+.+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~----lGad~-v--i~--~~~~~~~~~~~~~~~gv   91 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGASE-V--IS--REDVYDGTLKALSKQQW   91 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCSE-E--EE--HHHHCSSCCCSSCCCCE
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHh----hcccc-e--Ee--ccchhchhhhcccCCCc
Confidence            3456886664  4566788899887  4899999999887766544    45442 2  21  22211111111124689


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEeCCC
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVIDNVL  234 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~  234 (282)
                      |+||-.....    .+....+.   |+++|.+++=...
T Consensus        92 d~vid~vgg~----~~~~~~~~---l~~~G~iv~~G~~  122 (167)
T d1tt7a2          92 QGAVDPVGGK----QLASLLSK---IQYGGSVAVSGLT  122 (167)
T ss_dssp             EEEEESCCTH----HHHHHHTT---EEEEEEEEECCCS
T ss_pred             eEEEecCcHH----HHHHHHHH---hccCceEEEeecc
Confidence            9987654433    45667777   9999999885443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=86.51  E-value=2.1  Score=34.03  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=56.0

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH------HHHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL------KALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l------~~l~~~~  191 (282)
                      +++++|=.|+. +.++..+++.+ ..+++|+.++.+++.++.+.+.+...+.  ++.++.+|..+.-      ..+....
T Consensus         5 ~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHh
Confidence            57889988875 55566666554 2368999999999998888888887664  4788888876531      1222221


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                       .+..|+++..+.
T Consensus        82 -~g~idilinnag   93 (258)
T d1ae1a_          82 -DGKLNILVNNAG   93 (258)
T ss_dssp             -TSCCCEEEECCC
T ss_pred             -CCCcEEEecccc
Confidence             357888886543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=86.26  E-value=3.6  Score=32.51  Aligned_cols=82  Identities=12%  Similarity=0.104  Sum_probs=55.9

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HH----HHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~l~~~~  191 (282)
                      +++.+|-.|++. .++..+++.+. .+++|+.+|.+++.++.+.+.+...+  .++.++.+|..+.  ..    ......
T Consensus         7 ~GK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            577888888664 45666666552 36799999999999988888887665  3578888887542  12    222211


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                       .++.|+++..+.
T Consensus        84 -~~~idilvnnAG   95 (259)
T d2ae2a_          84 -HGKLNILVNNAG   95 (259)
T ss_dssp             -TTCCCEEEECCC
T ss_pred             -CCCceEEEECCc
Confidence             247999987654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.22  E-value=2.8  Score=31.08  Aligned_cols=92  Identities=16%  Similarity=0.214  Sum_probs=50.2

Q ss_pred             EEEEEcccc-cHHHHHHHHHCCCCCEEEEE-ecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEE
Q 023411          122 RCIEVGVYT-GYSSLAIALVLPESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  199 (282)
Q Consensus       122 ~VLEIG~G~-G~~t~~la~~~~~~~~v~~i-D~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV  199 (282)
                      +|.=||||. |..-.......+ +.+++++ |.+++..   ++..+..+.....++ ..|..+.+.       +..+|+|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~---~~~~~~~~~~~~~~~-~~~~~~ll~-------~~~iD~v   70 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKA---KAFATANNYPESTKI-HGSYESLLE-------DPEIDAL   70 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHH---HHHHHHTTCCTTCEE-ESSHHHHHH-------CTTCCEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCcccc---ccchhccccccceee-cCcHHHhhh-------cccccee
Confidence            577789984 332223334444 6788876 7776543   444455555544443 345544443       4678999


Q ss_pred             EEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          200 FVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       200 ~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      ++..+....   ++.+...   |+.|=-++++
T Consensus        71 ~I~tp~~~h---~~~~~~~---l~~g~~v~~E   96 (184)
T d1ydwa1          71 YVPLPTSLH---VEWAIKA---AEKGKHILLE   96 (184)
T ss_dssp             EECCCGGGH---HHHHHHH---HTTTCEEEEC
T ss_pred             eecccchhh---cchhhhh---hhccceeecc
Confidence            987654433   2334444   4555444444

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.19  E-value=1.6  Score=34.59  Aligned_cols=83  Identities=14%  Similarity=0.074  Sum_probs=56.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA  193 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~  193 (282)
                      +++.+|-.|.+ +.++..+++.+ ..+++|+.++.+++.++.+.+.++..+.  ++.++++|..+.  ...+.+.-  ..
T Consensus        10 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            56788866654 55677777665 3468999999999999888888887653  588899997652  11111110  02


Q ss_pred             CceeEEEEcCC
Q 023411          194 SSYDFAFVDAE  204 (282)
Q Consensus       194 ~~fDlV~id~~  204 (282)
                      +..|+++..+.
T Consensus        87 g~iDilvnnAG   97 (255)
T d1fmca_          87 GKVDILVNNAG   97 (255)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEeeeCCc
Confidence            68999887644

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=85.93  E-value=5.9  Score=33.47  Aligned_cols=126  Identities=13%  Similarity=0.172  Sum_probs=76.7

Q ss_pred             ccCHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEec-CccHHHHHHHHHHHhCCCCcEEEEEcch
Q 023411          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLA  180 (282)
Q Consensus       102 ~~~~~~~~ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~g~~~~v~~~~gd~  180 (282)
                      .-+|....+-..++..-++..++-..+|-+.++..+...++++.+|+..+. ........++.+...|+.  ++++..+-
T Consensus        55 ~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~--~~~~d~~d  132 (391)
T d1cl1a_          55 RGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVT--TSWFDPLI  132 (391)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCE--EEEECTTC
T ss_pred             CCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccc--cccccCcc
Confidence            457777777777888888888888888888777676666776778777653 334445555556666643  55554322


Q ss_pred             hhHHHHHHhCCCCCceeEEEEcCC------ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCC
Q 023411          181 ADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHG  237 (282)
Q Consensus       181 ~~~l~~l~~~~~~~~fDlV~id~~------~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g  237 (282)
                      .+.+....    ...-++|++...      ..+.....+.+..    -++|..+|+||.+-..
T Consensus       133 ~~~~~~~i----~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~----~~~g~~~vVDnT~atP  187 (391)
T d1cl1a_         133 GADIVKHL----QPNTKIVFLESPGSITMEVHDVPAIVAAVRS----VVPDAIIMIDNTWAAG  187 (391)
T ss_dssp             GGGGGGTC----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHH----HCTTCEEEEECTTTTT
T ss_pred             cccccccc----ccccceeeecccCcccccccccHHHHHHHHh----ccCCcEEEEeccccch
Confidence            22222211    456789998644      1223332222222    3578899999987443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.80  E-value=1.2  Score=35.81  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=57.7

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      +++++|-.|++ +.++..+++.+. .+++|+.++.+++.++.+.+.+...+.. .++.++.+|..+.  ...+.+.-  .
T Consensus         4 ~gK~alVTGas-~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSS-NGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            56788877765 456666666552 3679999999999999988888876653 4689999987542  11211110  1


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+++|+++.++.
T Consensus        83 ~g~iDilvnnAG   94 (272)
T d1xkqa_          83 FGKIDVLVNNAG   94 (272)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCceEEEeCCc
Confidence            268999987643

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=85.61  E-value=0.94  Score=36.64  Aligned_cols=95  Identities=18%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             EEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCC
Q 023411          125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  204 (282)
Q Consensus       125 EIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~  204 (282)
                      .+-+|+-.++..+   +.+.-+++.+|+.|+-.+..++++.   -..++.+.+.|..+.+..+...  .++=-+|+||.+
T Consensus        88 ~~YPGSP~ia~~l---lR~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~allPP--~~rRgLVLIDPp  159 (271)
T d2oo3a1          88 SYYPGSPYFAINQ---LRSQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNALLPP--PEKRGLIFIDPS  159 (271)
T ss_dssp             CEEECHHHHHHHH---SCTTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHHHCSC--TTSCEEEEECCC
T ss_pred             CcCCCCHHHHHHh---CCCCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHhhCCC--CCCceEEEecCC
Confidence            3555555444434   4446799999999998877776654   3457999999999877665433  244459999998


Q ss_pred             ccc---cHHHHHHHHHhhcCCC--CCcEEEE
Q 023411          205 KRM---YQEYFELLLQLLLQIR--VGGIIVI  230 (282)
Q Consensus       205 ~~~---~~~~l~~~~~~~~~Lk--pgG~lv~  230 (282)
                      .+.   |....+.+.+.   ++  |.|++++
T Consensus       160 YE~k~ey~~v~~~l~~a---~kr~~~g~~~i  187 (271)
T d2oo3a1         160 YERKEEYKEIPYAIKNA---YSKFSTGLYCV  187 (271)
T ss_dssp             CCSTTHHHHHHHHHHHH---HHHCTTSEEEE
T ss_pred             cCCHHHHHHHHHHHHHH---HHhCCCceEEE
Confidence            543   44444444433   22  6677665

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.12  E-value=2.5  Score=33.31  Aligned_cols=82  Identities=21%  Similarity=0.198  Sum_probs=54.9

Q ss_pred             CCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--CCC
Q 023411          120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EAS  194 (282)
Q Consensus       120 ~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~~~  194 (282)
                      ++.+|-.|++ +.++..+++.+. .+++|+.++.+++.++.+.+.++..+.  ++.++.+|..+.  ...+.+.-  .-+
T Consensus         2 gKValITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            3456766754 455666666652 368999999999999888888887654  588899987542  12221110  137


Q ss_pred             ceeEEEEcCC
Q 023411          195 SYDFAFVDAE  204 (282)
Q Consensus       195 ~fDlV~id~~  204 (282)
                      +.|+++..+.
T Consensus        79 ~iDilVnnAG   88 (257)
T d2rhca1          79 PVDVLVNNAG   88 (257)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEeccc
Confidence            8999987654

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=84.92  E-value=3.9  Score=27.99  Aligned_cols=77  Identities=13%  Similarity=0.092  Sum_probs=52.0

Q ss_pred             CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCccc--cHHHHHHHHHhhcCC
Q 023411          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLLLQI  222 (282)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~--~~~~l~~~~~~~~~L  222 (282)
                      .+|.-||=++...+..+..++..|+.  +.....+..+.+..+.    ...||+|++|-..+.  =.+.++.+++.    
T Consensus         2 krILivDD~~~~~~~l~~~L~~~g~~--v~~~a~~~~~al~~~~----~~~~dliilD~~mp~~~G~e~~~~ir~~----   71 (118)
T d1u0sy_           2 KRVLIVDDAAFMRMMLKDIITKAGYE--VAGEATNGREAVEKYK----ELKPDIVTMDITMPEMNGIDAIKEIMKI----   71 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH----HHCCSEEEEECSCGGGCHHHHHHHHHHH----
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHH----hccCCEEEEecCCCCCCHHHHHHHHHHh----
Confidence            47889999999999999999988753  4434467766666554    368999999977443  23445555543    


Q ss_pred             CCCc-EEEEe
Q 023411          223 RVGG-IIVID  231 (282)
Q Consensus       223 kpgG-~lv~d  231 (282)
                      .|.- ++++.
T Consensus        72 ~~~~pvi~ls   81 (118)
T d1u0sy_          72 DPNAKIIVCS   81 (118)
T ss_dssp             CTTCCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            3443 45554

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.86  E-value=1.7  Score=34.49  Aligned_cols=85  Identities=19%  Similarity=0.164  Sum_probs=57.2

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCC-CcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      +++.+|-.|++ +.++..+++.+ ..+++|+.++.+++.++.+.+.+...+.. .++.++.+|..+.  ...+.+.-  .
T Consensus         4 ~gKvalVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSS-NGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            56677877765 45666666655 34689999999999998888888877644 4689999987542  12211110  0


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .++.|+++..+.
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence            268998887643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.70  E-value=5.3  Score=31.31  Aligned_cols=82  Identities=12%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEE-ecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH------HHHHHh
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADS------LKALIL  189 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~i-D~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~------l~~l~~  189 (282)
                      ..+++||-.| |++.++..+++.+. .+++|+.. ..+++..+.+.+.++..|.  ++.++.+|..+.      ......
T Consensus         4 L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           4 LAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence            3577888777 45666777776653 35688764 5666777888888887664  588899988642      222221


Q ss_pred             CCCCCceeEEEEcCC
Q 023411          190 NGEASSYDFAFVDAE  204 (282)
Q Consensus       190 ~~~~~~fDlV~id~~  204 (282)
                      +  .+.+|.++..+.
T Consensus        81 ~--~g~idilinnag   93 (259)
T d1ja9a_          81 H--FGGLDFVMSNSG   93 (259)
T ss_dssp             H--HSCEEEEECCCC
T ss_pred             H--cCCCcEEEeccc
Confidence            1  367999887644

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.11  E-value=2.4  Score=31.29  Aligned_cols=127  Identities=16%  Similarity=0.081  Sum_probs=65.3

Q ss_pred             EEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEE
Q 023411          123 CIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  201 (282)
Q Consensus       123 VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~i  201 (282)
                      |-=||+  |..+..|++++- .+.+|++.|.+++..+...+............. ..+..+....+      ...+.++.
T Consensus         4 IGvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~   74 (178)
T d1pgja2           4 VGVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL------KKPRKALI   74 (178)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB------CSSCEEEE
T ss_pred             EEEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc------ccceEEEE
Confidence            334555  666666666652 246899999998876655444322222222222 22222232222      33344443


Q ss_pred             cCC-ccccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCcccCCcCCChhhHHHHHHHHHhhhCCCeEEEEeecCCc
Q 023411          202 DAE-KRMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDG  275 (282)
Q Consensus       202 d~~-~~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~G  275 (282)
                      ... .......+..+...   +++|.+++-.....+.             -.+++.+.+. ...+...--|+..|
T Consensus        75 ~~~~~~~~~~~~~~~~~~---~~~~~iii~~st~~~~-------------~~~~~~~~l~-~~~~~~ldapv~g~  132 (178)
T d1pgja2          75 LVQAGAATDSTIEQLKKV---FEKGDILVDTGNAHFK-------------DQGRRAQQLE-AAGLRFLGMGISGG  132 (178)
T ss_dssp             CCCCSHHHHHHHHHHHHH---CCTTCEEEECCCCCHH-------------HHHHHHHHHH-TTTCEEEEEEEESH
T ss_pred             eecCcchhhhhhhhhhhh---ccccceecccCccchh-------------HHHHHHHHHh-hcceeEecccccCC
Confidence            333 33344456677777   8888877654332211             1345555554 44667776776443

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.95  E-value=7.6  Score=31.86  Aligned_cols=119  Identities=11%  Similarity=0.088  Sum_probs=65.9

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhC--------------------C
Q 023411          110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------------------V  169 (282)
Q Consensus       110 ll~~l~~~~~~~~VLEIG~G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--------------------~  169 (282)
                      ++..++...+...|+-+|||.=.....+....+ +.+++=||. |+.++.=++.++...                    .
T Consensus        87 ~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~  164 (328)
T d1rjda_          87 AILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  164 (328)
T ss_dssp             HHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCC
Confidence            344444455667899999988766666665544 455666665 444443333333210                    1


Q ss_pred             CCcEEEEEcchhhH--HHHHHhCC-CCCceeEEEEcCC-----ccccHHHHHHHHHhhcCCCCCcEEEEeCC
Q 023411          170 SHKVKIKHGLAADS--LKALILNG-EASSYDFAFVDAE-----KRMYQEYFELLLQLLLQIRVGGIIVIDNV  233 (282)
Q Consensus       170 ~~~v~~~~gd~~~~--l~~l~~~~-~~~~fDlV~id~~-----~~~~~~~l~~~~~~~~~LkpgG~lv~dd~  233 (282)
                      .++.+++.+|..+.  ...+...+ +.+..=+++..+.     .+.....++.+...   ...+..++.+-+
T Consensus       165 s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~---f~~~~~i~YE~i  233 (328)
T d1rjda_         165 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSK---FSHGLWISYDPI  233 (328)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHH---CSSEEEEEEEEC
T ss_pred             CCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHh---CCCceEEEeccC
Confidence            24678888887653  33343333 2233335666665     33455567777766   655444554433

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=83.61  E-value=2.3  Score=33.66  Aligned_cols=83  Identities=13%  Similarity=0.031  Sum_probs=52.8

Q ss_pred             CCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHH-HHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~-~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .++++|-.|.+ +.++..+++.+. .+++|+.++.+++.++.+.+.+ +..+  .++.++++|..+.  ...+.+.-  .
T Consensus         8 ~gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            56788888854 556666666652 3579999999988776555544 4444  3588899987652  12221110  1


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .++.|+++..+.
T Consensus        85 ~g~iDilVnnAg   96 (260)
T d1h5qa_          85 LGPISGLIANAG   96 (260)
T ss_dssp             SCSEEEEEECCC
T ss_pred             hCCCcEeccccc
Confidence            478999887654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.23  E-value=1.3  Score=36.37  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             EEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCCCCCceeE
Q 023411          122 RCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDF  198 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~~~~~fDl  198 (282)
                      +||-+| |+|..+.++++.+ ..+.+|+++|.............+... ..+++++++|..+.  +.....   ..++|.
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~---~~~~d~   76 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILH---DHAIDT   76 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHH---HTTCSE
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHh---ccCCCE
Confidence            677776 6899999988876 235689999852221111111111111 13599999998663  222211   247899


Q ss_pred             EEEcCC
Q 023411          199 AFVDAE  204 (282)
Q Consensus       199 V~id~~  204 (282)
                      ||.-+.
T Consensus        77 ViHlAa   82 (338)
T d1udca_          77 VIHFAG   82 (338)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            997654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.80  E-value=1.6  Score=34.82  Aligned_cols=83  Identities=12%  Similarity=0.083  Sum_probs=54.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .+++.+|-.|++.| ++..+++.+ ..+++|+.+|.+++.++.+.+.+.   -..++.++.+|..+.  ...+.+.-  .
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG---SPDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---CCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            36778898887654 666666665 336899999999987776666554   344688889887542  22211100  1


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .+++|+++..+.
T Consensus        80 ~g~iD~lVnnAG   91 (268)
T d2bgka1          80 HGKLDIMFGNVG   91 (268)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCcceeccccc
Confidence            368999987643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.42  E-value=1.4  Score=34.68  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             CEEEEEcccccHHHHHHHHHC----CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHh----C
Q 023411          121 QRCIEVGVYTGYSSLAIALVL----PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALIL----N  190 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~----~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~----~  190 (282)
                      ++||-.|+..| ++..+++.+    ..+.+|+.++.+++.++.+++..+..   .++.++.+|..+.  ...+.+    .
T Consensus         3 KtilITGas~G-IG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           3 NSILITGCNRG-LGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH---SNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             SEEEESCCSSH-HHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC---TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CEEEEeCCCCH-HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC---CcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            57887776554 677777544    34679999999998877776554432   3699999987542  222111    0


Q ss_pred             CCCCceeEEEEcCC
Q 023411          191 GEASSYDFAFVDAE  204 (282)
Q Consensus       191 ~~~~~fDlV~id~~  204 (282)
                      ...+++|+++.++.
T Consensus        79 ~~~~~iDiLvnNAg   92 (248)
T d1snya_          79 TKDQGLNVLFNNAG   92 (248)
T ss_dssp             HGGGCCSEEEECCC
T ss_pred             hhcCCcceEEeecc
Confidence            01367999988754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=6.2  Score=31.78  Aligned_cols=86  Identities=19%  Similarity=0.126  Sum_probs=56.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhC---CCCcEEEEEcchhhH--HHHHHhCC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADS--LKALILNG  191 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g---~~~~v~~~~gd~~~~--l~~l~~~~  191 (282)
                      .+++.+|-.|++.| ++..+++.+ ..+++|+.++.+++.++.+.+.+....   ...++..+.+|..+.  ...+.+.-
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            46778898886654 566666555 236899999999988877777666432   234688899987642  22221110


Q ss_pred             --CCCceeEEEEcCC
Q 023411          192 --EASSYDFAFVDAE  204 (282)
Q Consensus       192 --~~~~fDlV~id~~  204 (282)
                        ..+..|+++.++.
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence              1368999987654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.05  E-value=2.5  Score=33.52  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=55.5

Q ss_pred             CCCEEEEEcccccHHHHHHHHHC-CCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HH----HHHhCC
Q 023411          119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILNG  191 (282)
Q Consensus       119 ~~~~VLEIG~G~G~~t~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~----~l~~~~  191 (282)
                      +++++|-.|++.| ++..+++.+ ..+++|+.++.+++.++.+.+.+...+.  ++..+.+|..+.  ..    ...+..
T Consensus         7 kgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            5778888886654 566666554 2368999999999988888887776553  588898887542  11    221111


Q ss_pred             CCCceeEEEEcCC
Q 023411          192 EASSYDFAFVDAE  204 (282)
Q Consensus       192 ~~~~fDlV~id~~  204 (282)
                       .+.+|+++..+.
T Consensus        84 -~g~idilvnnAG   95 (259)
T d1xq1a_          84 -GGKLDILINNLG   95 (259)
T ss_dssp             -TTCCSEEEEECC
T ss_pred             -CCCccccccccc
Confidence             267899987654

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.71  E-value=6  Score=27.05  Aligned_cols=78  Identities=8%  Similarity=0.125  Sum_probs=52.4

Q ss_pred             CEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCceeEEEEcCCcccc--HHHHHHHHHhhcCC
Q 023411          145 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY--QEYFELLLQLLLQI  222 (282)
Q Consensus       145 ~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~fDlV~id~~~~~~--~~~l~~~~~~~~~L  222 (282)
                      -+|.-||=++...+..++.++..|..  +. ...+..+.+..+.    ...||+|++|...+..  ......++..    
T Consensus         2 irILiVdDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~----~~~~dlillD~~mp~~~g~~~~~~lr~~----   70 (122)
T d1kgsa2           2 VRVLVVEDERDLADLITEALKKEMFT--VD-VCYDGEEGMYMAL----NEPFDVVILDIMLPVHDGWEILKSMRES----   70 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH----HSCCSEEEEESCCSSSCHHHHHHHHHHT----
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EEcchHHHHHHHH----hhCccccccccccccchhHHHHHHHHhc----
Confidence            47889999999999999999988864  44 4566666665554    4789999999774432  3344455443    


Q ss_pred             CCC-cEEEEeCC
Q 023411          223 RVG-GIIVIDNV  233 (282)
Q Consensus       223 kpg-G~lv~dd~  233 (282)
                      .+. -++++...
T Consensus        71 ~~~~piI~lt~~   82 (122)
T d1kgsa2          71 GVNTPVLMLTAL   82 (122)
T ss_dssp             TCCCCEEEEESS
T ss_pred             CCCCcEEEEcCC
Confidence            333 35555543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=0.68  Score=34.92  Aligned_cols=93  Identities=18%  Similarity=0.182  Sum_probs=57.7

Q ss_pred             CCCEEEEEcc--cccHHHHHHHHHCCCCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHHHHHHhCCCCCce
Q 023411          119 GAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY  196 (282)
Q Consensus       119 ~~~~VLEIG~--G~G~~t~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l~~l~~~~~~~~f  196 (282)
                      +++.||-.|.  |.|..++.+++.+  +++|+++.-+++..+.+++    .|.+   .++.-+..+....+    ....+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~----lGad---~vi~~~~~~~~~~l----~~~~~   97 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKS----LGAS---RVLPRDEFAESRPL----EKQVW   97 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTEE---EEEEGGGSSSCCSS----CCCCE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHh----hccc---cccccccHHHHHHH----HhhcC
Confidence            3457776553  2566788899887  5899999999988766654    3432   22222211111111    14567


Q ss_pred             eEEEEcCCccccHHHHHHHHHhhcCCCCCcEEEEe
Q 023411          197 DFAFVDAEKRMYQEYFELLLQLLLQIRVGGIIVID  231 (282)
Q Consensus       197 DlV~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~d  231 (282)
                      |.|+ |..-.   ..+....+.   |+++|.++.=
T Consensus        98 ~~vv-D~Vgg---~~~~~~l~~---l~~~Griv~~  125 (177)
T d1o89a2          98 AGAI-DTVGD---KVLAKVLAQ---MNYGGCVAAC  125 (177)
T ss_dssp             EEEE-ESSCH---HHHHHHHHT---EEEEEEEEEC
T ss_pred             CeeE-EEcch---HHHHHHHHH---hccccceEee
Confidence            8764 65543   346777788   9999998874

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=81.33  E-value=0.49  Score=34.63  Aligned_cols=95  Identities=9%  Similarity=0.001  Sum_probs=54.7

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCc--EEEEEcchhhHHHHHHhCCCCCceeE
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLKALILNGEASSYDF  198 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~--v~~~~gd~~~~l~~l~~~~~~~~fDl  198 (282)
                      +|+=||+|.  .+..++..+. .+..|+.++.+++..+..    ...+....  ...+..+..   ..      .+.+|+
T Consensus         2 kI~IiGaG~--iG~~~a~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~------~~~~D~   66 (167)
T d1ks9a2           2 KITVLGCGA--LGQLWLTALCKQGHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDP---DF------LATSDL   66 (167)
T ss_dssp             EEEEECCSH--HHHHHHHHHHHTTCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCH---HH------HHTCSE
T ss_pred             EEEEECcCH--HHHHHHHHHHHCCCceEEEEcCHHHhhhh----ccccCCccccccccccchh---hh------hcccce
Confidence            688888854  3333443332 146899999887533211    11111111  112222222   22      257899


Q ss_pred             EEEcCCccccHHHHHHHHHhhcCCCCCcEEEE-eCCC
Q 023411          199 AFVDAEKRMYQEYFELLLQLLLQIRVGGIIVI-DNVL  234 (282)
Q Consensus       199 V~id~~~~~~~~~l~~~~~~~~~LkpgG~lv~-dd~~  234 (282)
                      ||+-.......+.++.+.++   +.++..++. .|-+
T Consensus        67 iii~vka~~~~~~~~~l~~~---~~~~~~Iv~~qNG~  100 (167)
T d1ks9a2          67 LLVTLKAWQVSDAVKSLAST---LPVTTPILLIHNGM  100 (167)
T ss_dssp             EEECSCGGGHHHHHHHHHTT---SCTTSCEEEECSSS
T ss_pred             EEEeecccchHHHHHhhccc---cCcccEEeeccCcc
Confidence            99988877788888888888   888875554 4543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.85  E-value=4.1  Score=31.97  Aligned_cols=83  Identities=18%  Similarity=0.069  Sum_probs=53.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhH--HHHHHhCC--C
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E  192 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~--l~~l~~~~--~  192 (282)
                      .+++.+|-.|.+ +.++..+++.+. .+++|+.++.+++.++.+.+.+.   ...++.++.+|..+.  ...+.+.-  .
T Consensus         4 L~gK~alVTGas-~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           4 LDGKVAIITGGT-LGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            356788877754 556666666552 36899999999988777766553   345799999998652  12211110  1


Q ss_pred             CCceeEEEEcCC
Q 023411          193 ASSYDFAFVDAE  204 (282)
Q Consensus       193 ~~~fDlV~id~~  204 (282)
                      .++.|+++..+.
T Consensus        80 ~G~iDiLVnnAg   91 (251)
T d1zk4a1          80 FGPVSTLVNNAG   91 (251)
T ss_dssp             HSSCCEEEECCC
T ss_pred             hCCceEEEeccc
Confidence            368998887654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=80.39  E-value=2.5  Score=30.33  Aligned_cols=36  Identities=17%  Similarity=0.110  Sum_probs=27.1

Q ss_pred             CEEEEEcccccHHHHHHHHHCCC-CCEEEEEecCccHH
Q 023411          121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSL  157 (282)
Q Consensus       121 ~~VLEIG~G~G~~t~~la~~~~~-~~~v~~iD~s~~~~  157 (282)
                      ++|.=|| |.|..+..|++.+.+ +..|+++|.++...
T Consensus        10 ~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~   46 (152)
T d2pv7a2          10 HKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAV   46 (152)
T ss_dssp             CCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGG
T ss_pred             CeEEEEc-CCCHHHHHHHHHHHHcCCCcEecccccccc
Confidence            4788888 567888888887743 46899999987643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=80.15  E-value=5  Score=31.96  Aligned_cols=83  Identities=16%  Similarity=0.079  Sum_probs=53.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHHHHHHhCCCCcEEEEEcchhhHH--H----HHHhC
Q 023411          118 LGAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--K----ALILN  190 (282)
Q Consensus       118 ~~~~~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~v~~~~gd~~~~l--~----~l~~~  190 (282)
                      .+++++|-.|+.. .++..+++.+- .+++|+.+|.+++.++.+.+.+.... ..++.++.+|..+.-  .    .....
T Consensus        23 l~gK~alITGas~-GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          23 FQGKVAFITGGGT-GLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhh
Confidence            4668899888754 46666666542 36799999999988776665554332 235788888875531  1    11111


Q ss_pred             CCCCceeEEEEcCC
Q 023411          191 GEASSYDFAFVDAE  204 (282)
Q Consensus       191 ~~~~~fDlV~id~~  204 (282)
                        .+..|+++..+.
T Consensus       101 --~g~iDilvnnAg  112 (294)
T d1w6ua_         101 --AGHPNIVINNAA  112 (294)
T ss_dssp             --TCSCSEEEECCC
T ss_pred             --ccccchhhhhhh
Confidence              478999887644

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.05  E-value=9.1  Score=28.65  Aligned_cols=105  Identities=9%  Similarity=0.112  Sum_probs=55.1

Q ss_pred             EEEEEcccccHHHHHHHHHCC-CCCEEEEEecCccHHHHHHH------------HHHHhCCCCcEEEEEcchhhHHHHHH
Q 023411          122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALI  188 (282)
Q Consensus       122 ~VLEIG~G~G~~t~~la~~~~-~~~~v~~iD~s~~~~~~a~~------------~~~~~g~~~~v~~~~gd~~~~l~~l~  188 (282)
                      +|--||+|  +.++.+|..+. .+.+|+++|++++.++..++            .+.......+.. ...|..+..    
T Consensus         2 kI~ViGlG--~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~-~~~~~~~~i----   74 (202)
T d1mv8a2           2 RISIFGLG--YVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS-GTTDFKKAV----   74 (202)
T ss_dssp             EEEEECCS--TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE-EESCHHHHH----
T ss_pred             EEEEECCC--HhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc-cCCCHHHHH----
Confidence            46667775  44444333331 24689999999886654432            111111111122 222222221    


Q ss_pred             hCCCCCceeEEEEcCCc----------cccHHHHHHHHHhhcCCCCCcEEEEeCCCCCCc
Q 023411          189 LNGEASSYDFAFVDAEK----------RMYQEYFELLLQLLLQIRVGGIIVIDNVLWHGK  238 (282)
Q Consensus       189 ~~~~~~~fDlV~id~~~----------~~~~~~l~~~~~~~~~LkpgG~lv~dd~~~~g~  238 (282)
                           ...|++|+.-+-          .......+.+....+.++++..+++.....+|.
T Consensus        75 -----~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGt  129 (202)
T d1mv8a2          75 -----LDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (202)
T ss_dssp             -----HTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             -----hhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcc
Confidence                 245888875431          112334455555433366888999988888886