Citrus Sinensis ID: 023433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHccccccccccccccccccccccccEEEccccccccccccccEEEEEEEEEEEEEEccccEEEEEEEEEccHHHHHHHHHHHHccccHHHHHHcHHHHHHHcccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEccEEEEEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccEcccccccccEEccccccEcccEcccccEEEEEEEEEEEEEEEEEEEEEEEEEEEcHHHHHHHHcHHcccccHHHHcccHHHHHHHHccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEcccEEEEEccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvslrfpfsfsqpsnlphtatrsFSVAVTAAAAAATASVAGIAVyhnqkhplvqNALNclfsnqssshfwaslsfadnssatvvesktgtsfpsvlggsrkllgiglrkksvlglknidvyafgvyadhdDVKKILSEKYGNMSVAELKENKlnedlmeaDVCMTVRLQIIYNKLSIRSVRSAFEESVGSRlqkfggsdnKELLQKFTSQFkdeykipkgsVIELSKERGHVLwttidgkevgsIQSKLLCRSLLDlyigeepfdrkaKEDIELNLSSLIQK
Flexible Loop (DISEMBL)
MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESktgtsfpsvlggsrklLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSrlqkfggsdnkELLQKFTsqfkdeykipkgsvielskergHVLWTtidgkevgsiqSKLLCRSLLDLYIGeepfdrkakedIELNLSSLIQK
Low Complexity Region (SEG)
MVSLRFPFSFSQPSNLPHtatrsfsvavtaaaaaatasvagiavYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK
Disordered region (IsUnstruct)
**********************SFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADN***TVV*****TSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAF*********************KFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEP*******************
Disordered Region (DISOPRED)
**SLRF**********************TAAAAAATASVAGIA***N***PLVQNALNCLFSNQSSSHFWA***********VVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKK******************LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFG**DNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQ*
Disordered Region (DISEMBL)
MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK
Disordered Region (DISPRO)
****RFPFSFSQPSN***TATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q6BN19	297	Altered inheritance of mi	yes	no	0.748	0.710	0.24	0.0007

>sp|Q6BN19|AIM18_DEBHA Altered inheritance of mitochondria protein 18, mitochondrial OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=AIM18 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 39/250 (15%)

Query: 5   RFPFSFSQPSNLPHTATR---SFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLF 61
           RF FS      L  ++ R   S  +          +++ G+A+Y+   H L++       
Sbjct: 11  RFNFSKVTTKRLFSSSARPIHSLRIKSLTLGVCGFSAITGLALYN---HRLIE------- 60

Query: 62  SNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVY 121
            +        ++S A +SS +   +   ++  + L    +LLG G+R  + +  K   VY
Sbjct: 61  LDNKKQDISPNISIAVDSSISPFPTALISANQTNLNTDFQLLGYGVRSVTFVNFK---VY 117

Query: 122 AFGVYADHDDV---KKILSEKY------GNMSVAELKEN-----KLNEDLMEADVCMTVR 167
             G+Y  +DDV   KKILS  Y       N S+ EL  +     +L   L+E +V   VR
Sbjct: 118 GIGLYIANDDVNKTKKILSPNYLSTFGTENHSLRELLSDPEFSAQLISKLLEENVRFAVR 177

Query: 168 LQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSK 227
           +  + N      ++    +S+   L      +NKE++     + ++ +   +GSV     
Sbjct: 178 ISPVRNT-DFNHLKDGLIKSI---LAHPESKENKEIVSNGLEELRNVFSGYRGSV----- 228

Query: 228 ERGHVLWTTI 237
            + HVLW  I
Sbjct: 229 PKNHVLWLEI 238

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
255559428	293	conserved hypothetical protein [Ricinus	0.996	0.959	0.683	1e-103
296085199	332	unnamed protein product [Vitis vinifera]	0.982	0.834	0.708	1e-103
225437020	280	PREDICTED: uncharacterized protein LOC10	0.982	0.989	0.708	1e-102
449458494	285	PREDICTED: uncharacterized protein LOC10	0.996	0.985	0.671	1e-100
147794001	293	hypothetical protein VITISV_001830 [Viti	0.982	0.945	0.677	1e-100
224062494	296	predicted protein [Populus trichocarpa]	0.989	0.942	0.661	4e-99
356572192	275	PREDICTED: uncharacterized protein LOC10	0.957	0.981	0.658	3e-94
297817656	279	hypothetical protein ARALYDRAFT_486819 [	0.964	0.974	0.599	3e-88
18412649	279	Chalcone-flavanone isomerase family prot	0.953	0.964	0.585	2e-84
255645064	252	unknown [Glycine max]	0.875	0.980	0.634	2e-84

>gi|255559428|ref|XP_002520734.1| conserved hypothetical protein [Ricinus communis] gi|223540119|gb|EEF41696.1| conserved hypothetical protein [Ricinus communis]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/294 (68%), Positives = 232/294 (78%), Gaps = 13/294 (4%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRS-FSVAVTAAAAAATASVAGIAV---------YHNQKH 50
           MVSLRFPF FSQP   P+ AT   FS   T  A A  A  A  A          ++N++ 
Sbjct: 1   MVSLRFPFLFSQPRKQPNHATSGHFSATRTVVACAVAAGAATFAGIAATHNSYNFNNKER 60

Query: 51  PLVQNALNCLFSNQSSSHFWASLSFADNS-SATVVESKTGTSFPSVLGGSRKLLGIGLRK 109
           P  QN LN LF+N +S   W SLS AD S + TVVESKTG SFPSV+  +R+LLG+GLR+
Sbjct: 61  PFTQNVLNLLFANINSLP-WGSLSLADASPTTTVVESKTGVSFPSVVYETRRLLGVGLRR 119

Query: 110 KSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRL 168
           KSVLGLKNI+VYAFGVYAD D VKK+L EKYG +S++ELK+NK   +D ME D+C TVRL
Sbjct: 120 KSVLGLKNINVYAFGVYADDDQVKKVLGEKYGKISISELKQNKGFKDDYMEGDICTTVRL 179

Query: 169 QIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKE 228
           QI+Y+KLSIRSVRSAFEESVGSRLQKFGG DNKELLQ+FTSQFKDEYKIP+GSVIELS++
Sbjct: 180 QIVYSKLSIRSVRSAFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSRD 239

Query: 229 RGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           +GHVL TTIDGKEVGSIQSKLLCRS+LDLYIGE+PFDR+AKEDIE  L SLIQK
Sbjct: 240 KGHVLRTTIDGKEVGSIQSKLLCRSILDLYIGEDPFDRQAKEDIESKLVSLIQK 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085199|emb|CBI28694.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 235/285 (82%), Gaps = 8/285 (2%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVY---HNQKHPLVQNAL 57
           MVSLRFPFSFSQP N  H ++ SFS A TA + AA +  A  A      N  +P +QNA 
Sbjct: 53  MVSLRFPFSFSQPPNPRHRSSNSFSAAATAFSVAAASGAAVAAAVAVSQNPINPFLQNAF 112

Query: 58  NCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKN 117
           N  FSN SS  FWASLS ADN S+ V ESKTG  FPS+L  SR+LLG GLRKKSVLGLKN
Sbjct: 113 N-FFSNHSSP-FWASLSIADNPSS-VSESKTGVLFPSILNDSRQLLGTGLRKKSVLGLKN 169

Query: 118 IDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSI 177
           IDVYAFGVYAD  D+K++LSEKYG +S +E K+  L++DLMEAD+CMTVRLQI+Y++LSI
Sbjct: 170 IDVYAFGVYADDGDLKRLLSEKYGKLSFSERKD--LSKDLMEADICMTVRLQIVYSRLSI 227

Query: 178 RSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTI 237
           RSVR+AFEESVGSRLQK GGSDNKELL +FTSQFKDEYKIPKGSVI+LS+ERGHVL TTI
Sbjct: 228 RSVRNAFEESVGSRLQKLGGSDNKELLHRFTSQFKDEYKIPKGSVIDLSRERGHVLRTTI 287

Query: 238 DGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           DGKEVG+IQS+LLCRS+LDLYIGE+PFDR+AKE++EL L SL+QK
Sbjct: 288 DGKEVGNIQSQLLCRSILDLYIGEDPFDRRAKEEVELKLVSLLQK 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437020|ref|XP_002278163.1| PREDICTED: uncharacterized protein LOC100257991 [Vitis vinifera]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 235/285 (82%), Gaps = 8/285 (2%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVY---HNQKHPLVQNAL 57
           MVSLRFPFSFSQP N  H ++ SFS A TA + AA +  A  A      N  +P +QNA 
Sbjct: 1   MVSLRFPFSFSQPPNPRHRSSNSFSAAATAFSVAAASGAAVAAAVAVSQNPINPFLQNAF 60

Query: 58  NCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKN 117
           N  FSN SS  FWASLS ADN S +V ESKTG  FPS+L  SR+LLG GLRKKSVLGLKN
Sbjct: 61  N-FFSNHSSP-FWASLSIADNPS-SVSESKTGVLFPSILNDSRQLLGTGLRKKSVLGLKN 117

Query: 118 IDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSI 177
           IDVYAFGVYAD  D+K++LSEKYG +S +E K+  L++DLMEAD+CMTVRLQI+Y++LSI
Sbjct: 118 IDVYAFGVYADDGDLKRLLSEKYGKLSFSERKD--LSKDLMEADICMTVRLQIVYSRLSI 175

Query: 178 RSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTI 237
           RSVR+AFEESVGSRLQK GGSDNKELL +FTSQFKDEYKIPKGSVI+LS+ERGHVL TTI
Sbjct: 176 RSVRNAFEESVGSRLQKLGGSDNKELLHRFTSQFKDEYKIPKGSVIDLSRERGHVLRTTI 235

Query: 238 DGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           DGKEVG+IQS+LLCRS+LDLYIGE+PFDR+AKE++EL L SL+QK
Sbjct: 236 DGKEVGNIQSQLLCRSILDLYIGEDPFDRRAKEEVELKLVSLLQK 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458494|ref|XP_004146982.1| PREDICTED: uncharacterized protein LOC101204632 [Cucumis sativus] gi|449529142|ref|XP_004171560.1| PREDICTED: uncharacterized LOC101204632 [Cucumis sativus]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/286 (67%), Positives = 233/286 (81%), Gaps = 5/286 (1%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHP---LVQNAL 57
           MVSLRFPFSF QP   P       S A   AA  A A+V  +A   N  +P    ++ AL
Sbjct: 1   MVSLRFPFSFPQPPKPPRRTFLRPSYAAAVAAGGAAAAVGFVAAARNSTNPQTPFLECAL 60

Query: 58  NCLFSNQSSSHFWASLSFADNSSAT-VVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLK 116
           N LFS+ SS   WASLS A+NS+A+ VV+SKTG SFPSV+G S++LLGIGLR+K++LGLK
Sbjct: 61  NLLFSSHSSP-LWASLSLAENSAASSVVDSKTGFSFPSVIGDSQQLLGIGLRRKAILGLK 119

Query: 117 NIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLS 176
           NI+VYAFGVYAD+DD+K+ LSEKYG ++V EL+E   ++D+ME D+CMTVRLQI+Y KLS
Sbjct: 120 NINVYAFGVYADNDDIKESLSEKYGKLTVTELQEKDFDKDVMECDICMTVRLQIVYGKLS 179

Query: 177 IRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTT 236
           IRSVRSAFEESVG+RLQKFGGSDNKELL KFTSQFKDEYKIP+GSVI+LSKERGHVL T 
Sbjct: 180 IRSVRSAFEESVGNRLQKFGGSDNKELLDKFTSQFKDEYKIPRGSVIDLSKERGHVLRTI 239

Query: 237 IDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           IDGKEVGSIQS+LLCR++LDLYIGE+PFD++AKED+   L+S++QK
Sbjct: 240 IDGKEVGSIQSQLLCRAILDLYIGEDPFDKQAKEDVRQALTSILQK 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794001|emb|CAN73325.1| hypothetical protein VITISV_001830 [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/298 (67%), Positives = 235/298 (78%), Gaps = 21/298 (7%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVY---HNQKHPLVQNAL 57
           MVSLRFPFSFSQP N  H ++ SFS A TA + AA +  A  A      N  +P +QNA 
Sbjct: 1   MVSLRFPFSFSQPPNPRHRSSNSFSAAATAFSVAAASGAAVAAAVAVSQNPINPFLQNAF 60

Query: 58  NCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKN 117
           N  FSN SS  FWASLS ADN S +V ESKTG  FPS+L  SR+LLG GLRKKSVLGLKN
Sbjct: 61  N-FFSNHSSP-FWASLSIADNPS-SVSESKTGVXFPSILNDSRQLLGTGLRKKSVLGLKN 117

Query: 118 IDVYAFG-------------VYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCM 164
           IDVYAFG             VYAD  D+K++LSEKYG +S +E K+  L++DLMEAD+CM
Sbjct: 118 IDVYAFGTAFLYYHLKSXQCVYADDGDLKRLLSEKYGKLSFSERKD--LSKDLMEADICM 175

Query: 165 TVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIE 224
           TVRLQI+Y++LSIRSVR+AFEESVGSRLQK GGSDNKELL +FTSQFKDEYKIPKGSVI+
Sbjct: 176 TVRLQIVYSRLSIRSVRNAFEESVGSRLQKLGGSDNKELLHRFTSQFKDEYKIPKGSVID 235

Query: 225 LSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           LS+ERGHVL TTIDGKEVG+IQS+LLCRS+LDLYIGE+PFDR+AKE++EL L SL+QK
Sbjct: 236 LSRERGHVLRTTIDGKEVGNIQSQLLCRSILDLYIGEDPFDRRAKEEVELKLVSLLQK 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062494|ref|XP_002300842.1| predicted protein [Populus trichocarpa] gi|222842568|gb|EEE80115.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 195/295 (66%), Positives = 228/295 (77%), Gaps = 16/295 (5%)

Query: 1   MVSLRFPFSFSQPSNLPH-----TATRSFSVAVTAAAAAATASVAGIAVYH--------N 47
           MVSLRFPF FSQP   P+       +RSF    T  A A  A  A  A            
Sbjct: 1   MVSLRFPFLFSQPKKHPNGISRTITSRSFPATTTTVACALAAGAAAFAGIAATRNSKNPK 60

Query: 48  QKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGL 107
           Q +P +QNALN LFSN   +  WASLS AD  S +VVE+KTG +FPSV+  SR+LLGIGL
Sbjct: 61  QDNPFIQNALNLLFSNHLLAP-WASLSLAD-PSPSVVETKTGAAFPSVIFESRRLLGIGL 118

Query: 108 RKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTV 166
           RKK++LGLKNIDVYAFGVYAD D+V+K+LSEKYG +SV+ELKE+K   ED M  D+ MTV
Sbjct: 119 RKKTILGLKNIDVYAFGVYADADEVRKVLSEKYGKLSVSELKESKEFKEDFMGGDIGMTV 178

Query: 167 RLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELS 226
           RLQI+Y+KLSIRSVRSAFEESVGSRLQ FG  ++KELLQ+FTSQFKDEYKIP+GSVIELS
Sbjct: 179 RLQIVYSKLSIRSVRSAFEESVGSRLQNFGEPNSKELLQRFTSQFKDEYKIPRGSVIELS 238

Query: 227 KERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQ 281
           +E+GHVL TTIDGKEVGSIQSKLLCRS+LDLYIGE+PFD++AKEDIE   +SL+Q
Sbjct: 239 REQGHVLRTTIDGKEVGSIQSKLLCRSILDLYIGEDPFDKEAKEDIESKFASLLQ 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572192|ref|XP_003554254.1| PREDICTED: uncharacterized protein LOC100785266 [Glycine max]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/278 (65%), Positives = 219/278 (78%), Gaps = 8/278 (2%)

Query: 4   LRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSN 63
           LRFPFSF QP   P      F    TA AAA   + A +    +     ++NALN  FS+
Sbjct: 5   LRFPFSFPQPRR-PQ-----FPRPFTAFAAAVAGASAAVVAVSSSDRSFLRNALNSFFSS 58

Query: 64  QSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAF 123
             S   W SLS AD S  +VVESKTGTSFPSVL  S+KL GIGLRKKS+LGLKNIDVYAF
Sbjct: 59  DLSMPLWGSLSLAD-SGVSVVESKTGTSFPSVLDSSQKLCGIGLRKKSILGLKNIDVYAF 117

Query: 124 GVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRS 182
           GVYAD +D+K+ LSEKYG +S +EL+ +K   EDLME+D+ MT+RLQI+Y +LSIRSVRS
Sbjct: 118 GVYADDEDIKRHLSEKYGKLSASELQGSKEFTEDLMESDISMTIRLQIVYGRLSIRSVRS 177

Query: 183 AFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEV 242
           AFEESVGSRLQKFGGSDNKELLQ FTSQFKDE+KIP+GSVI LS+++GHVL T+IDG+EV
Sbjct: 178 AFEESVGSRLQKFGGSDNKELLQSFTSQFKDEFKIPRGSVIHLSRDKGHVLRTSIDGQEV 237

Query: 243 GSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLI 280
           GSIQSKLLC+S+LDLY GEEPFD++AKE+IELN++S +
Sbjct: 238 GSIQSKLLCKSILDLYFGEEPFDKQAKEEIELNMASYL 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817656|ref|XP_002876711.1| hypothetical protein ARALYDRAFT_486819 [Arabidopsis lyrata subsp. lyrata] gi|297322549|gb|EFH52970.1| hypothetical protein ARALYDRAFT_486819 [Arabidopsis lyrata subsp. lyrata]

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/282 (59%), Positives = 214/282 (75%), Gaps = 10/282 (3%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFS-VAVTAAAAAATASV-AGIAVYHNQKHPLVQNALN 58
           MVS RFPFSFSQP      AT SFS  +++A A + T    A IA   N  HP+V+ AL+
Sbjct: 1   MVSFRFPFSFSQPPR----ATSSFSGFSISAVAVSVTVGAGAAIAASRNPNHPIVEWALS 56

Query: 59  CLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNI 118
              S++SS   W S++ AD++  +VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNI
Sbjct: 57  ---SHRSSLLPWGSITLADSTPESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNI 113

Query: 119 DVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSI 177
           DVYAFGVYAD  DVKK++ +KY ++  +E++ NK   +DLMEAD+ MT+RLQI+Y KL+I
Sbjct: 114 DVYAFGVYADCHDVKKLVGDKYADLPASEIRGNKAFMDDLMEADIKMTIRLQIVYGKLNI 173

Query: 178 RSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTI 237
           RSVR+AF+ESVG+RL KFGG DN ELLQ FTS FKDEYKIP+ S I+L+KE GHVL   I
Sbjct: 174 RSVRNAFQESVGNRLNKFGGPDNDELLQSFTSLFKDEYKIPRNSTIDLTKEPGHVLCVAI 233

Query: 238 DGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSL 279
           +G  VGS+QS+LLCRS+LDLYIGEEPFD+ A+ED   N +SL
Sbjct: 234 EGNHVGSVQSQLLCRSILDLYIGEEPFDKNAREDFLDNAASL 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412649|ref|NP_567140.1| Chalcone-flavanone isomerase family protein [Arabidopsis thaliana] gi|7523399|emb|CAB86418.1| hypothetical protein [Arabidopsis thaliana] gi|17473780|gb|AAL38325.1| unknown protein [Arabidopsis thaliana] gi|20148595|gb|AAM10188.1| unknown protein [Arabidopsis thaliana] gi|21593803|gb|AAM65770.1| unknown [Arabidopsis thaliana] gi|332646922|gb|AEE80443.1| Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/285 (58%), Positives = 211/285 (74%), Gaps = 16/285 (5%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFS-VAVTAAAAAATASVAGIAVY----HNQKHPLVQN 55
           MVS RFPFSFSQP      AT SFS  +++A A + T   A          N  HP+++ 
Sbjct: 1   MVSFRFPFSFSQPPR----ATTSFSGFSISAVAVSVTVGAAAAGAAIAASRNPSHPILEW 56

Query: 56  ALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGL 115
           A +   S++SS   W S++ AD S   VVE KTG SFP+ +G SR+LLG+GLRKKS+LGL
Sbjct: 57  AFS---SHRSSLSPWGSITLADES---VVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGL 110

Query: 116 KNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNK 174
           KNIDVYAFGVYAD DDVKK++ +KY N+  +E++ NK   +DLMEAD+ MT+RLQI+Y K
Sbjct: 111 KNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGK 170

Query: 175 LSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLW 234
           L+IRSVR+AF+ESVG+RL+KFGGSDN ELLQ FTS FKDEYKIP+ S I+L+K+ GHVL 
Sbjct: 171 LNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLS 230

Query: 235 TTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSL 279
             I+G  VGS++S LLCRS+LDLYIGEEPFD+ A+ED   N +SL
Sbjct: 231 VAIEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASL 275

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645064|gb|ACU23031.1| unknown [Glycine max]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 167/263 (63%), Positives = 200/263 (76%), Gaps = 16/263 (6%)

Query: 4   LRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSN 63
           LRFPFSF QP   P    R F+    AAA +++                ++NALN  FS 
Sbjct: 5   LRFPFSFLQPQR-PQFP-RPFTAFAAAAAVSSS------------DRSFLRNALNSFFSV 50

Query: 64  QSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAF 123
             S     SLS AD S   VVE+KTGTSFPS+L  S+KL GIGLRKK+VLGLKNIDVYAF
Sbjct: 51  NPSMPLLGSLSLAD-SGVCVVEAKTGTSFPSILDSSQKLCGIGLRKKNVLGLKNIDVYAF 109

Query: 124 GVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRS 182
           GVYA  +D+K+ LSEKYG +S +EL+ NK   EDLME+D+ MT+RLQ++Y +LSIRSVRS
Sbjct: 110 GVYATDEDIKRHLSEKYGKLSASELQGNKEFTEDLMESDISMTIRLQVVYGRLSIRSVRS 169

Query: 183 AFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEV 242
           AFE SVGS+LQKFGGSDNKELLQ+FTSQFKDE+KIP+GSVI LS+++GHVL T+IDG+EV
Sbjct: 170 AFEVSVGSKLQKFGGSDNKELLQRFTSQFKDEFKIPRGSVIHLSRDKGHVLRTSIDGQEV 229

Query: 243 GSIQSKLLCRSLLDLYIGEEPFD 265
           GSIQSKLLC+S+LDLY GEEPFD
Sbjct: 230 GSIQSKLLCKSILDLYFGEEPFD 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2077229	279	FAP1 "fatty-acid-binding prote	0.968	0.978	0.562	1.5e-76
TAIR|locus:2057751	398	FAP2 "fatty-acid-binding prote	0.755	0.535	0.330	2.2e-27
DICTYBASE|DDB_G0276631	315	DDB_G0276631 "Uncharacterized	0.684	0.612	0.266	2.1e-10

TAIR|locus:2077229 FAP1 "fatty-acid-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 158/281 (56%), Positives = 198/281 (70%)

Query:     1 MVSLRFPFSFSQPSNLPHXXXXXXXXXXXXXXXXXXXXXXXX-XXYHNQKHPLVQNALNC 59
             MVS RFPFSFSQP                                  N  HP+++ A + 
Sbjct:     1 MVSFRFPFSFSQPPRATTSFSGFSISAVAVSVTVGAAAAGAAIAASRNPSHPILEWAFS- 59

Query:    60 LFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNID 119
               S++SS   W S++ AD S   VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNID
Sbjct:    60 --SHRSSLSPWGSITLADES---VVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNID 114

Query:   120 VYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIR 178
             VYAFGVYAD DDVKK++ +KY N+  +E++ NK   +DLMEAD+ MT+RLQI+Y KL+IR
Sbjct:   115 VYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIR 174

Query:   179 SVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTID 238
             SVR+AF+ESVG+RL+KFGGSDN ELLQ FTS FKDEYKIP+ S I+L+K+ GHVL   I+
Sbjct:   175 SVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIE 234

Query:   239 GKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSL 279
             G  VGS++S LLCRS+LDLYIGEEPFD+ A+ED   N +SL
Sbjct:   235 GNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASL 275

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005504 "fatty acid binding" evidence=IPI

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2057751 FAP2 "fatty-acid-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 73/221 (33%), Positives = 120/221 (54%)

Query:    70 WASLSFAD-NSSATVVESKTGTSFPSVL------GGSRKLLGIGLRKKSVLGLKNIDVYA 122
             ++ LSF   + +   VE +TG  FP +L        S  L+  G R   ++ +K++ VYA
Sbjct:   177 YSGLSFQKLDWTRQSVEPRTGIEFPMLLKENASRSNSEVLVATGSRTMKIIRIKSLKVYA 236

Query:   123 FGVYADHDDVKKILSEKYGNMSVAEL-KENKLNEDLMEADVCMTVRLQIIYNKLSIRSVR 181
             FG Y     V + L  KY ++  ++L K + L +DL+  D+ M+VRL + YN L I +VR
Sbjct:   237 FGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDLLREDIVMSVRLVVNYNGLKINTVR 296

Query:   182 SAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKE 241
               FE+S+ +RL K     +   L  F S F+ +  IP G++I+  +     L T I G  
Sbjct:   297 DVFEKSLRARLVKANPKTDFNCLNDFGSFFRQDIPIPAGTIIDFRRTEDGQLITEIGGNL 356

Query:   242 VGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
             +G+++SK LCR+   +YIG+ P   + KE+I   +  +I++
Sbjct:   357 IGAVRSKDLCRAFFGMYIGDVPVSEQTKEEIGRKVVGIIKR 397

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

DICTYBASE|DDB_G0276631 DDB_G0276631 "Uncharacterized protein YHR198C" [Dictyostelium discoideum (taxid:44689)]

 Score = 165 (63.1 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 55/206 (26%), Positives = 97/206 (47%)

Query:    83 VVESKTGTSFPSVLGGSR--KLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKY 140
             + + KTG  FP +L       L+ IG RK S +   N++VY+ G Y + D+ K  L+E Y
Sbjct:    95 ITQIKTGFKFPKILSTEYPFNLVNIGSRKLSFI---NMNVYSIGFYINKDNAKNKLNEHY 151

Query:   141 GNMSVAELKENKLN--EDLMEADVCMTVRLQIIYNKLSIRSVRSAFEES-VGSRLQKFGG 197
              N S  +   NK+   +D+++  + +T++++    K++   +   F+ S +   L+K+  
Sbjct:   152 SNQSKEDFCMNKVEIAQDILDKGIGVTIKIRPT-RKVNWGHIYGGFQRSLIIMLLKKYDM 210

Query:   198 S-DNKE-LLQKFTSQFKDEYKIPKGSVIELSKERG--HVLWTTIDGKEVGSIQSKLLCRS 253
               D  E L+ +  S  K   +I     I+  K  G    L    + K+V  I+ K L   
Sbjct:   211 PLDEIEVLMNQLKSTLKSTQEISTTESIDFIKNDGLDPSLIILFNNKQVLEIKDKRLANC 270

Query:   254 LLDLYIGEEPFDRKAKEDIELNLSSL 279
               D Y+G+     +A+     NL S+
Sbjct:   271 FFDFYLGDNTKTPEARNQFFENLWSI 296


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      282       256   0.00086  114 3  11 22  0.49    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.82u 0.12s 24.94t   Elapsed:  00:00:01
  Total cpu time:  24.82u 0.12s 24.94t   Elapsed:  00:00:01
  Start:  Mon May 20 22:37:21 2013   End:  Mon May 20 22:37:22 2013

GO:0016872 "intramolecular lyase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.5.1	LOW CONFIDENCE prediction!
4th Layer	5.5.1.6	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
PLN03174	278	PLN03174, PLN03174, Chalcone-flavanone isomerase-r	1e-158
PLN03175	415	PLN03175, PLN03175, hypothetical protein; Provisio	2e-47
pfam02431	200	pfam02431, Chalcone, Chalcone-flavanone isomerase	1e-41
PLN02311	271	PLN02311, PLN02311, chalcone isomerase	4e-06

>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related; Provisional

 Score =  441 bits (1135), Expect = e-158
 Identities = 206/283 (72%), Positives = 232/283 (81%), Gaps = 6/283 (2%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCL 60
           MVSLRFPFSFSQP   P     + + AV AAAAAA A+ A IA   N  HP +QNALN  
Sbjct: 1   MVSLRFPFSFSQPPRAPSFF--AAAAAVAAAAAAAAAAAAAIAASRNPPHPFLQNALN-- 56

Query: 61  FSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDV 120
             + SSS  WAS+S AD S  +VVESKTG SFP+ +G SR+LLG+GLRKKS+LGLKNIDV
Sbjct: 57  -FHNSSSPPWASISLADPSPPSVVESKTGVSFPAEIGDSRRLLGVGLRKKSILGLKNIDV 115

Query: 121 YAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRS 179
           YAFGVYAD DD+KK+L EKYG +S +ELK NK   +DLMEAD+ MTVRLQI+Y KLSIRS
Sbjct: 116 YAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLMEADIKMTVRLQIVYGKLSIRS 175

Query: 180 VRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDG 239
           VRSAFEESVGSRLQKFGGSDNKELLQ FTS FKDEYKIPKGSVI+LS+E GHVL TTIDG
Sbjct: 176 VRSAFEESVGSRLQKFGGSDNKELLQSFTSLFKDEYKIPKGSVIDLSREPGHVLRTTIDG 235

Query: 240 KEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           KEVGSIQSKLLCRS+LDLYIGE+PFD+ AKEDIE NL+SL+Q 
Sbjct: 236 KEVGSIQSKLLCRSILDLYIGEDPFDKNAKEDIEENLASLLQD 278

Length = 278

>gnl|CDD|178719 PLN03175, PLN03175, hypothetical protein; Provisional

 Score =  163 bits (413), Expect = 2e-47
 Identities = 82/220 (37%), Positives = 128/220 (58%), Gaps = 8/220 (3%)

Query: 71  ASLSFAD-NSSATVVESKTGTSFPSVLG------GSRKLLGIGLRKKSVLGLKNIDVYAF 123
           + LSF D N +   VE +TG  FP +L        S  L+G G R   ++ +K++ VYAF
Sbjct: 195 SGLSFPDLNWTRDAVEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAF 254

Query: 124 GVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRS 182
           G Y   + V + L  KY ++  +ELK+     EDL+  D+ MTVRL + YN L I +VR 
Sbjct: 255 GFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTVRD 314

Query: 183 AFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEV 242
           AFE+S+ +RLQK   + +   L+ F S F ++  IP G+ I+  +     L T I G ++
Sbjct: 315 AFEKSLRNRLQKMNPNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQLITEIGGNQI 374

Query: 243 GSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           G+++SK LCR+  D+YIG+ P   + KE+I  N++ +I++
Sbjct: 375 GAVRSKDLCRAFFDMYIGDVPVSEQTKEEIGQNVAGIIRR 414

Length = 415

>gnl|CDD|217029 pfam02431, Chalcone, Chalcone-flavanone isomerase

 Score =  141 bits (358), Expect = 1e-41
 Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 18/203 (8%)

Query: 92  FPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVA 146
           FP  +       S  LLG G+R  S LG K I VYA GVY    DV  + S+  G  S  
Sbjct: 1   FPPTISPPGSPKSLFLLGAGVRGVSFLG-KFIKVYAIGVYLAKSDVPSLASKWKGK-SAE 58

Query: 147 ELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKE--L 203
           EL+E++    DL++  +   +R+  I N L  + +R  F ES+ +RL+K G  +++E   
Sbjct: 59  ELEESEDFFRDLLDGGIEKFIRIVPIRN-LDGKHLRDGFVESLVARLKKAGTYEDEEEEA 117

Query: 204 LQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTID------GKEVGSIQSKLLCRSLLDL 257
           L+KF   FKD+  +PKGS I  ++     L  +          E+G +++KL+ R+LL  
Sbjct: 118 LEKFREAFKDKGSVPKGSSILFTRSPDGSLTISFSKDGKIPETELGVVENKLVSRALLLS 177

Query: 258 YI-GEEPFDRKAKEDIELNLSSL 279
           Y+ G++P   +AK+ +   L+SL
Sbjct: 178 YLAGKKPVSPEAKKSVAEGLASL 200

Chalcone-flavanone isomerase is a plant enzyme responsible for the isomerisation of chalcone to naringenin, a key step in the biosynthesis of flavonoids. Length = 200

>gnl|CDD|215177 PLN02311, PLN02311, chalcone isomerase

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 26/239 (10%)

Query: 57  LNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVL-----GGSRKLLGIGLRKK- 110
            +C   N+ S     S +F+  S+    E+ T   F   L          LLG G R+K 
Sbjct: 45  RHC---NEISRVIVKSAAFSVGSAEYAEETATSVKFQRSLTLPGCSSPLSLLGTGYREKV 101

Query: 111 -SVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRL 168
            +++G+K   VYA G+Y +   +  + + K    S  E++ +  L   + +A    +  L
Sbjct: 102 FAIIGVK---VYAAGLYVNPSILSGLSAWK--GRSADEIQRDSSLFSSIFQAPAEKS--L 154

Query: 169 QIIYNK-LSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIEL-- 225
           QI+  + +  ++   A +E++  R+ K    D+   L  F S F++   + KG+VI L  
Sbjct: 155 QIVLVRDVDGKTFWDALDEAISPRI-KAPSPDDTSALSTFRSIFQNR-SLNKGTVIFLTW 212

Query: 226 ---SKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQ 281
              SK    +    +      +I+S  +  +L D++ G+ P     K  +   L++ ++
Sbjct: 213 INPSKMLVCISSEGLPSSVDATIESGNVTSALFDVFFGDSPVSPSLKASVANGLATTLK 271

Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PLN03174	278	Chalcone-flavanone isomerase-related; Provisional	100.0
PLN03175	415	hypothetical protein; Provisional	100.0
PLN02311	271	chalcone isomerase	100.0
PF02431	199	Chalcone: Chalcone-flavanone isomerase; InterPro:	100.0
PLN02804	206	chalcone isomerase	100.0
PLN02559	230	chalcone--flavonone isomerase	100.0

>PLN03174 Chalcone-flavanone isomerase-related; Provisional

Probab=100.00  E-value=8.1e-73  Score=519.33  Aligned_cols=277  Identities=74%  Similarity=1.078  Sum_probs=261.1

Q ss_pred             CcccccccCCCCCCCCCCCCCchhHHHHHHHHHHhhhhhhhhhhhccCCCchhHhhhhhcccCCCCCccccceeeccCCC
Q 023433            1 MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSS   80 (282)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsla~~~~   80 (282)
                      ||||||||+|+||+  |+++...+++++++++++++|+.|+|++++|+.|||+||+||  |+||++| +|++|||+|+++
T Consensus         1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~a~~~~   75 (278)
T PLN03174          1 MVSLRFPFSFSQPP--RAPSFFAAAAAVAAAAAAAAAAAAAIAASRNPPHPFLQNALN--FHNSSSP-PWASISLADPSP   75 (278)
T ss_pred             CcceecccccCCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhcc--cCCCCCc-ccccceeccCCC
Confidence            99999999999999  888766666666666666666679999999999999999999  8999998 999999999999


Q ss_pred             CceeccCCCccCCCcccCCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHhh
Q 023433           81 ATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLME  159 (282)
Q Consensus        81 ~~~~E~~TGv~FP~~l~~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll~  159 (282)
                      +.+|||+||+.||++++.+..|+|+|+|+|.|+|+++||||++|||++++++++.|++||.+++.+|+.+++ |+++|++
T Consensus        76 ~~~vEp~tGv~FP~~l~~~~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~~s~~f~~dil~  155 (278)
T PLN03174         76 PSVVESKTGVSFPAEIGDSRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLME  155 (278)
T ss_pred             CceeccCCCCcCCCcccCCCcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhhcCHHHHHHHHc
Confidence            999999999999999987777889999999999999999999999999998999899999999999999999 9999999


Q ss_pred             CCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEEEECC
Q 023433          160 ADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDG  239 (282)
Q Consensus       160 ~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v~~nG  239 (282)
                      ++.+|++||+++|++++.++++++++++++.||++.++.+.++.|++|.++|+++++++|||+|+|+|.|++++++++||
T Consensus       156 ~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~e~~e~IekF~~~F~~~~~l~kGdvI~~~~~Pg~gl~vsi~G  235 (278)
T PLN03174        156 ADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQSFTSLFKDEYKIPKGSVIDLSREPGHVLRTTIDG  235 (278)
T ss_pred             CCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCcchHHHHHHHHHHHhccccCCCCCEEEEEEcCCCeEEEEECC
Confidence            99999999999999999999999999999999999887777888999999999988889999999999999999999999


Q ss_pred             EEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhC
Q 023433          240 KEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK  282 (282)
Q Consensus       240 ~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~~  282 (282)
                      ++.|+|++++||+|+|+||||++|+||++|++|++++++||++
T Consensus       236 k~~g~Ie~~~f~~ALf~iyLGd~PVsp~lK~sll~~la~ll~~  278 (278)
T PLN03174        236 KEVGSIQSKLLCRSILDLYIGEDPFDKNAKEDIEENLASLLQD  278 (278)
T ss_pred             EEeeEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999975

>PLN03175 hypothetical protein; Provisional

Probab=100.00  E-value=9.5e-44  Score=337.48  Aligned_cols=203  Identities=38%  Similarity=0.687  Sum_probs=192.4

Q ss_pred             CCceeccCCCccCCCccc------CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-
Q 023433           80 SATVVESKTGTSFPSVLG------GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-  152 (282)
Q Consensus        80 ~~~~~E~~TGv~FP~~l~------~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-  152 (282)
                      ..++|||+||++||..++      +.+.|+|+|+|.+.|+|+++||||++|+|++++.++..|+.||.|++.+||.+++ 
T Consensus       205 ~~~~vEPkTgv~FP~~l~~~p~s~~sl~L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKsa~EL~~s~e  284 (415)
T PLN03175        205 TRDAVEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVPASELKKCPD  284 (415)
T ss_pred             cccccccCCCCcCCccccCCCCCCCceeeeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCcHHHHccCHH
Confidence            466799999999999995      4589999999999999888999999999999988899999999999999999999 


Q ss_pred             hHHHHhhCCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccccCCCCCCCEEEEEEecCCE
Q 023433          153 LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHV  232 (282)
Q Consensus       153 ~~~~ll~~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~  232 (282)
                      ||++|++++.+|++||++.++.++.++++++|+++++.||++.+..++.++|++|.++|+++++++|||.|+|+|.|+++
T Consensus       285 Ff~DIItap~~m~IRLVii~~gI~~sk~~~Afees~g~RLkkt~gdae~eAIeKF~s~F~~di~fpkGssI~Ft~sP~gg  364 (415)
T PLN03175        285 FYEDLLREDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMNPNTDYNCLKTFGSFFTEDIPIPAGTKIDFRRTSDGQ  364 (415)
T ss_pred             HHHHHHcCCccEEEEEEEecCCccHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHhhcccccCCCCEEEEEEcCCCc
Confidence            99999999999999999988899999999999999999999987777788899999999877889999999999999999


Q ss_pred             EEEEECCEEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhC
Q 023433          233 LWTTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK  282 (282)
Q Consensus       233 l~v~~nG~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~~  282 (282)
                      +++++||+++|+|++++||+|+|++|||++|+||++|+++..++++||++
T Consensus       365 LtisInG~~vgvIEnk~L~eALfdiyLGd~PVSPslKeslA~~La~Ll~~  414 (415)
T PLN03175        365 LITEIGGNQIGAVRSKDLCRAFFDMYIGDVPVSEQTKEEIGQNVAGIIRR  414 (415)
T ss_pred             eEEEECCeeeeEeccHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999974

>PLN02311 chalcone isomerase

Probab=100.00  E-value=6.1e-43  Score=320.40  Aligned_cols=208  Identities=22%  Similarity=0.363  Sum_probs=186.3

Q ss_pred             ccccceeeccCCCCceeccCCCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccC
Q 023433           68 HFWASLSFADNSSATVVESKTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGN  142 (282)
Q Consensus        68 ~~~~~lsla~~~~~~~~E~~TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~  142 (282)
                      |+-.+-+++-++...++||+|||+||+.+.     ++|+|+|+|+|+|.|+| ++||||++|||+++..+ ++|+ +|.+
T Consensus        53 ~~~~~~~~~~~~~~~~~ep~TgV~Fp~~v~~~~~s~~L~LnGaGvR~K~I~~-~~vKVYA~GLYL~~~~~-~~L~-kwkg  129 (271)
T PLN02311         53 VIVKSAAFSVGSAEYAEETATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAI-IGVKVYAAGLYVNPSIL-SGLS-AWKG  129 (271)
T ss_pred             eeeeccccccCcccceecCCcCCcCCccccCCCCCCceeEeeeEEeeEEEee-eeEEEEEEEEEechhhh-hhHh-hhcC
Confidence            555566666677778999999999999984     68999999999999865 47999999999999755 4576 8999


Q ss_pred             CchhHhhhhh-hHHHHhhCCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccccCCCCCCC
Q 023433          143 MSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGS  221 (282)
Q Consensus       143 ~s~~el~~~~-~~~~ll~~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~~~~~~L~~f~~~F~~~~kl~kGd  221 (282)
                      .+++||.++. |+++|++++.+|+|||+++ |++++++++++|+|++++||+.. ..++.+.|++|.++|++. ++++||
T Consensus       130 k~a~eL~~~~~ff~dIi~a~~eK~irI~~i-R~v~g~~~~~A~~eg~~~rlk~~-~~~~~~aLekF~~~F~~~-~l~kGd  206 (271)
T PLN02311        130 RSADEIQRDSSLFSSIFQAPAEKSLQIVLV-RDVDGKTFWDALDEAISPRIKAP-SPDDTSALSTFRSIFQNR-SLNKGT  206 (271)
T ss_pred             CCHHHHhcchHHHHHHhcCCcceEEEEEEE-ecCCHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHhcCC-CCCCCC
Confidence            9999999998 9999999999999999996 99999999999999999999664 456788999999999874 789999


Q ss_pred             EEEEEEecCCEEEEEEC-----CEEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhh
Q 023433          222 VIELSKERGHVLWTTID-----GKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQ  281 (282)
Q Consensus       222 ~i~~~~~p~~~l~v~~n-----G~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~  281 (282)
                      +|+|+|.|++++++.++     ++..|+|++++||+|+|+||||++|+||++|++++.++++||+
T Consensus       207 ~I~~~~~p~~~~~v~~s~~g~~~~~~g~Ies~~f~~ALf~i~LGd~PVs~~lK~sla~~la~ll~  271 (271)
T PLN02311        207 VIFLTWINPSKMLVCISSEGLPSSVDATIESGNVTSALFDVFFGDSPVSPSLKASVANGLATTLK  271 (271)
T ss_pred             EEEEEEeCCCceEEEEecCCcccceeEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhC
Confidence            99999999888888874     4568999999999999999999999999999999999999986

>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5

Probab=100.00  E-value=4.8e-38  Score=277.37  Aligned_cols=177  Identities=36%  Similarity=0.603  Sum_probs=152.9

Q ss_pred             CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchh-Hhhhhh-hHHHHhhCCcceEEEEEEEecCC
Q 023433           98 GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVA-ELKENK-LNEDLMEADVCMTVRLQIIYNKL  175 (282)
Q Consensus        98 ~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~-el~~~~-~~~~ll~~~~~~~lrL~~~~R~v  175 (282)
                      ++++|+|+|+|+++|+   +||||++|+|++++++++.++ +|.+.... |+.+++ |+++|++++.++++||+++ |++
T Consensus        12 ~~l~L~G~GvR~~~~~---~ikVYavG~Yv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~k~iri~~~-R~~   86 (199)
T PF02431_consen   12 EELSLLGAGVRTVSFL---NIKVYAVGLYVDDSDAKKLLK-KWKGKSASDDLEKSEDFFDDLLDSPVEKAIRIVPV-RNV   86 (199)
T ss_dssp             SEEEEEEEEEEEEEET---EEEEEEEEEEEECCHHHHHHH-HHTTT-HHHHHHT-HHHHHHHHHSSS-EEEEEEES-SSE
T ss_pred             CCeEEEEEEEeeEEEE---EEEEEEEEEEEChhHhhhHHH-hhhcccCcccccccHHHHHHHhcCCccEEEEEEEE-ecC
Confidence            7899999999999996   599999999999998887654 55555444 777777 9999999999999999997 999


Q ss_pred             ChHHHHHHHHHHHHHhhhcCC--CCCcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEEEEC------CEEEEEECC
Q 023433          176 SIRSVRSAFEESVGSRLQKFG--GSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTID------GKEVGSIQS  247 (282)
Q Consensus       176 ~~~~l~daf~~sl~~rl~~~~--~~~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v~~n------G~~~G~I~s  247 (282)
                      +++|++|+|.+++.+|+++.+  ..+.++.|++|+++|+...+++|||.|+|+|.|++++++.++      |+++|+|++
T Consensus        87 ~~~~l~d~~~~~i~~r~~~~~~~~~~~~~~l~~f~~~F~~~g~~~kG~~i~l~~~~~g~l~v~~~~~~~~~~~~~g~I~~  166 (199)
T PF02431_consen   87 DGKHLRDAFIESIRPRLKAAGTEEEALEEALDEFKSLFKSKGSVPKGDVITLTWSPDGSLTVSYNGQGKIPGKELGTIKS  166 (199)
T ss_dssp             EHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHTTB-EE-TT-EEEEEEETTTEEEEEEESSSS--SSECEEEE-
T ss_pred             CHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHhcccccccCCCEEEEEECCCCcEEEEEecCCCCCccceeEEcC
Confidence            999999999999999998875  346799999999999766578999999999999999999999      899999999


Q ss_pred             HHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHh
Q 023433          248 KLLCRSLLDLYI-GEEPFDRKAKEDIELNLSSL  279 (282)
Q Consensus       248 ~~f~~Alf~IwL-G~~Pvsp~lK~~llg~l~~l  279 (282)
                      +.||+++|++|| |++|+||++|++++.++++|
T Consensus       167 ~~~~~al~~~yL~G~~pvs~~~k~s~~~~l~~l  199 (199)
T PF02431_consen  167 PRFARALFDIYLSGDKPVSPSLKKSVAEGLASL  199 (199)
T ss_dssp             HHHHHHHHHHHH-STT-S-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHhhcC
Confidence            999999999999 99999999999999999986

5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....

>PLN02804 chalcone isomerase

Probab=100.00  E-value=2.7e-35  Score=260.07  Aligned_cols=188  Identities=22%  Similarity=0.329  Sum_probs=171.2

Q ss_pred             CCccCCCccc---CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHhhCCcc
Q 023433           88 TGTSFPSVLG---GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVC  163 (282)
Q Consensus        88 TGv~FP~~l~---~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll~~~~~  163 (282)
                      .|++||+.+.   +.+.|.|+|+|.+.+.|+ +||+|++|+|+++ +++.+| .||.|++.+||.++. |+++|++++.+
T Consensus         7 ~~v~FP~~i~~ss~~l~L~G~G~R~~~I~~~-~iK~yAiGvYle~-~~~~~L-~kwkgk~a~EL~~~~~Ff~dlv~~p~e   83 (206)
T PLN02804          7 EDIPFPPQITTSSKPLSLLGHGITDIEIHFL-QIKFTAIGVYLEP-SVKGHL-QSWKGKPGSELAEDDDFFQALIQAPVE   83 (206)
T ss_pred             cCcCCCceeecCCCcceEEeecccceEEEeE-EEEEEEEEEEecH-HHHHHH-HHhcCCCHHHHhcCHHHHHHHHcCChh
Confidence            6999999995   679999999999999886 8999999999998 588888 599999999999999 99999999999


Q ss_pred             eEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHhccccCCCCCCCEEEEEEec-CCEEEEE--EC
Q 023433          164 MTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELLQKFTSQFKDEYKIPKGSVIELSKER-GHVLWTT--ID  238 (282)
Q Consensus       164 ~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~--~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p-~~~l~v~--~n  238 (282)
                      |.+|++++ |++++.++++++++++++||++.+.+  +++++|++|.+.|+++ +++||+.|+|+|.| ++.+++.  .+
T Consensus        84 k~~Ri~~i-~~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~kf~~~Fk~~-~fp~Gs~I~ft~~~~~g~l~Isfs~d  161 (206)
T PLN02804         84 KLIRIVVI-KEIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALEKVVEFFQSK-YFKKNSIITYHFPATSGIVEISFSTE  161 (206)
T ss_pred             hEEEEEEE-ecCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhCCC-cCCCCCEEEEEecCCCCeEEEEEecC
Confidence            99999998 89999999999999999999999854  4689999999999876 89999999999998 6666644  46


Q ss_pred             CEEE--EEECCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHhh
Q 023433          239 GKEV--GSIQSKLLCRSLLDLYI-GEEPFDRKAKEDIELNLSSLI  280 (282)
Q Consensus       239 G~~~--G~I~s~~f~~Alf~IwL-G~~Pvsp~lK~~llg~l~~ll  280 (282)
                      |.+.  +.|+|+.+|+|+|+.|| |++|+||++|++++.+++.++
T Consensus       162 g~e~~~~~Ienk~l~~avl~~yi~G~~~VSp~~k~slA~~la~~~  206 (206)
T PLN02804        162 GKEESKLTVENANVVEMIQKWYLGGENGVSPSTISSVADSIAAEL  206 (206)
T ss_pred             CcccceeEEecHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhC
Confidence            7655  56999999999999999 999999999999999999875

>PLN02559 chalcone--flavonone isomerase

Probab=100.00  E-value=7.3e-34  Score=252.50  Aligned_cols=191  Identities=27%  Similarity=0.400  Sum_probs=175.8

Q ss_pred             CCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHhhCC
Q 023433           88 TGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEAD  161 (282)
Q Consensus        88 TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll~~~  161 (282)
                      .|+.||+.+.     +.+.|.|+|+|.+.|.| ++||+|++|+|+++..+ ..|..||.|++.+||.++. ||++|+.++
T Consensus        10 e~i~FP~~v~~p~s~~~l~L~GaG~Rg~eI~~-~~vKftAiGvYle~~av-~~L~~KWKGKsa~EL~~~~~Ff~div~~p   87 (230)
T PLN02559         10 EGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQG-KFIKFTAIGVYLEGNAV-PSLAKKWKGKTAEELADSVAFFRDVVTGD   87 (230)
T ss_pred             cceecCCcccCCCCCCceEEEeccccceEEee-EEEEEEEEEEEechhHH-HHHHHhhCCcCHHHHhcCHHHHHHHHcCc
Confidence            7899999985     67999999999999987 68999999999998755 6788899999999999999 999999999


Q ss_pred             cceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEEEE--
Q 023433          162 VCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTI--  237 (282)
Q Consensus       162 ~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~--~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v~~--  237 (282)
                      .+|.+|++++ +++++.++.+...+....+|+..+.+  ++.++|++|.++|+++ .+++|+.|+|+|.|++.+++.+  
T Consensus        88 ~EK~~rV~~I-~~l~G~qy~~kv~e~~~a~~ks~g~y~daE~~aLekF~~~Fk~~-~fp~Gs~I~ft~sp~g~L~isfs~  165 (230)
T PLN02559         88 FEKFTRVTMI-LPLTGEQYSEKVTENCVAIWKSLGIYTDAEAKAVEKFKEAFKEE-TFPPGSSILFTHSPTGSLTVAFSK  165 (230)
T ss_pred             chhhEEEEEE-EeccccchHHHHhHHHHHHHHhcCCcchhHHHHHHHHHHHhcCC-CCCCCCEEEEEECCCCcEEEEEec
Confidence            9999999997 99999999999999999999998765  4689999999999986 8999999999999999998776  


Q ss_pred             CC----EEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhC
Q 023433          238 DG----KEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK  282 (282)
Q Consensus       238 nG----~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~~  282 (282)
                      ||    ...+.|+|+.+|+|+|+.|||++|+||++|++++.+++.||++
T Consensus       166 dg~ipe~~~~~Ienk~l~eAv~e~~IG~~~VSP~aK~slA~~la~ll~~  214 (230)
T PLN02559        166 DSSVPEVGNAVIENKLLCEAVLESIIGKHGVSPAAKLSLAARLSELLKK  214 (230)
T ss_pred             CCCCCccceEEEechHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHhc
Confidence            43    4568999999999999999999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
4doo_A	205	Crystal Structure Of Arabidopsis Thaliana Fatty-Aci		2e-75

>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid Binding Protein At3g63170 (Atfap1) Length = 205

Iteration: 1
 Score =  278 bits (712), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/199 (67%), Positives = 167/199 (83%), Gaps = 1/199 (0%)
Query: 82  TVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYG 141
           +VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNIDVYAFGVYAD DDVKK++ +KY 
Sbjct: 4   SVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYA 63
Query: 142 NMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDN 200
           N+  +E++ NK   +DLMEAD+ MT+RLQI+Y KL+IRSVR+AF+ESVG+RL+KFGGSDN
Sbjct: 64  NLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDN 123
Query: 201 KELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDLYIG 260
            ELLQ FTS FKDEYKIP+ S I+L+K+ GHVL   I+G  VGS++S LLCRS+LDLYIG
Sbjct: 124 DELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDLYIG 183
Query: 261 EEPFDRKAKEDIELNLSSL 279
           EEPFD+ A+ED   N +SL
Sbjct: 184 EEPFDKNAREDFLDNAASL 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	2e-60
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	1e-42
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	2e-38
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	7e-37
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	6e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana} Length = 205

 Score =  189 bits (482), Expect = 2e-60
 Identities = 134/203 (66%), Positives = 168/203 (82%), Gaps = 1/203 (0%)

Query: 79  SSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSE 138
           +  +VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNIDVYAFGVYAD DDVKK++ +
Sbjct: 1   ADESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGD 60

Query: 139 KYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGG 197
           KY N+  +E++ NK   +DLMEAD+ MT+RLQI+Y KL+IRSVR+AF+ESVG+RL+KFGG
Sbjct: 61  KYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGG 120

Query: 198 SDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLLDL 257
           SDN ELLQ FTS FKDEYKIP+ S I+L+K+ GHVL   I+G  VGS++S LLCRS+LDL
Sbjct: 121 SDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHVGSVKSHLLCRSILDL 180

Query: 258 YIGEEPFDRKAKEDIELNLSSLI 280
           YIGEEPFD+ A+ED   N +SL 
Sbjct: 181 YIGEEPFDKNAREDFLDNAASLA 203

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A* Length = 222

 Score =  144 bits (364), Expect = 1e-42
 Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 18/218 (8%)

Query: 79  SSATVVESKTGTSFPSVL-----GGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVK 133
           +++    +     +P+V+     G S  L G G R  ++ G   I   A GVY +   V 
Sbjct: 2   AASITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDIAVA 60

Query: 134 KILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRL 192
             L+ K+   S  EL E      D++       +R   I   LS         E+  + L
Sbjct: 61  S-LAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRE-LSGPEYSRKVMENCVAHL 118

Query: 193 QKFG--GSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLW------TTIDGKEVGS 244
           +  G  G    E +QKF   FK     P G+ +   +    +L       T+I  KE   
Sbjct: 119 KSVGTYGDAEAEAMQKFAEAFKPV-NFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAAL 177

Query: 245 IQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           I++K +  ++L+  IGE       K  +   L +L+ +
Sbjct: 178 IENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNE 215

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana} Length = 217

 Score =  133 bits (336), Expect = 2e-38
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 17/221 (7%)

Query: 71  ASLSFADNSSATVVESKTGTSFPSVL-----GGSRKLLGIGLRKKSVLGLKNIDVYAFGV 125
           ++ S   N+     E+ T   F   +          LLG G R+K    +  + VYA G 
Sbjct: 2   SAASSVGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAII-GVKVYAAGY 60

Query: 126 YADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAF 184
           Y +   +  +    +   S  E++ +  L   + +A    ++++ ++ + +  ++   A 
Sbjct: 61  YVNESILSGL--SAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRD-VDGKTFWDAL 117

Query: 185 EESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEV-- 242
           +E++  R++     D    L  F   F++   + KGSVI L+      +  ++    +  
Sbjct: 118 DEAISPRIKSPSSED-TTALSTFCCIFQNR-PLNKGSVILLTWINTSNMLVSVSSGGLPT 175

Query: 243 ---GSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLI 280
               +I+S  +  +L D++ G+ P     K  +   L+  +
Sbjct: 176 NVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 216

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana} Length = 208

 Score =  129 bits (325), Expect = 7e-37
 Identities = 39/204 (19%), Positives = 77/204 (37%), Gaps = 15/204 (7%)

Query: 88  TGTSFPSVLGGSRK--LLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSV 145
               FP  +  S+   LLG G+    +     +   A GVY D  DVK    + +   + 
Sbjct: 8   HEVPFPPQIITSKPLSLLGQGITDIEIHF-LQVKFTAIGVYLDPSDVKT-HLDNWKGKTG 65

Query: 146 AELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFG--GSDNKE 202
            EL  +    + L  A++   +R+ +I   +         E +V  RL +      + + 
Sbjct: 66  KELAGDDDFFDALASAEMEKVIRVVVIKE-IKGAQYGVQLENTVRDRLAEEDKYEEEEET 124

Query: 203 LLQKFTSQFKDEYKIPKGSVIEL---SKERGHVLWTTIDGKEVGS--IQSKLLCRSLLDL 257
            L+K    F+ +      SVI     +K+    +    +GKE     +++  +   +   
Sbjct: 125 ELEKVVGFFQSK-YFKANSVITYHFSAKDGICEIGFETEGKEEEKLKVENANVVGMMQRW 183

Query: 258 YI-GEEPFDRKAKEDIELNLSSLI 280
           Y+ G           I  ++S+++
Sbjct: 184 YLSGSRGVSPSTIVSIADSISAVL 207

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana} Length = 246

 Score =  127 bits (321), Expect = 6e-36
 Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 65  SSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRK--LLGIGLRKKSVLGLKNIDVYA 122
           SSS+  AS S     +   V+S T          S    L G G+R   + G K +    
Sbjct: 2   SSSNACASPSPFPAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQG-KFVIFTV 60

Query: 123 FGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVR 181
            GVY + + V   LS K+   +  EL E+     +++       +++ +    L+ +   
Sbjct: 61  IGVYLEGNAVPS-LSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLP-LTGQQYS 118

Query: 182 SAFEESVGSRLQKFG--GSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLW----- 234
               E+  +  ++ G       + ++KF   FK+E   P GS I  +      L      
Sbjct: 119 EKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEE-TFPPGSSILFALSPTGSLTVAFSK 177

Query: 235 -TTIDGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
             +I    +  I++KLL  ++L+  IG+       +  +   LS L+ K
Sbjct: 178 DDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMK 226

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 3e-12
 Identities = 45/276 (16%), Positives = 84/276 (30%), Gaps = 85/276 (30%)

Query: 47  NQKHPL--VQNALNCLFSNQSSSHFWASLSFADN-SSATVVESKTGTSFPSVLGGSRKLL 103
           N K  +  +Q  L  L  ++   +    L    N  +A    +     F       + L 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNVQNAKAWNA-----F---NLSCKIL- 269

Query: 104 GIGLRKKSVLGLKNIDVYAFGVYAD-----------HDDVKKILSEKYGNMSVAELKENK 152
            +  R K V      D  +                  D+VK +L  KY +    +L    
Sbjct: 270 -LTTRFKQV-----TDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPR-- 320

Query: 153 LNEDLMEADVCMTVRLQII-------------YNKLSIRSVRSAFEESVGSRLQKFGGSD 199
                 E       RL II             +  ++   + +  E S    L     ++
Sbjct: 321 ------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLEPAE 370

Query: 200 NKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTIDGKEVGSIQSKLLCRSLL---- 255
            +++  +  S F     IP   ++        ++W  +   +V  + +KL   SL+    
Sbjct: 371 YRKMFDRL-SVFPPSAHIPT-ILLS-------LIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 256 --------DLYIGEEPFDRKAKEDIELNL-SSLIQK 282
                    +Y      + K K + E  L  S++  
Sbjct: 422 KESTISIPSIY-----LELKVKLENEYALHRSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	100.0
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	100.0
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	100.0
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	100.0
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	100.0

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-48  Score=345.52  Aligned_cols=201  Identities=67%  Similarity=1.075  Sum_probs=190.8

Q ss_pred             CCceeccCCCccCCCcccCCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHh
Q 023433           80 SATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLM  158 (282)
Q Consensus        80 ~~~~~E~~TGv~FP~~l~~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll  158 (282)
                      ++.++||+||++||++++.+++|+|+|+|++.|+|+++||||++|||+++.+++++|+.||.+++++||.+++ |+++|+
T Consensus         2 ~~~~vep~tgv~FP~~~~~~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~~~~il   81 (205)
T 4doo_A            2 DESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLM   81 (205)
T ss_dssp             -CCEECTTTCCEECSEETTTEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTHHHHHH
T ss_pred             CCccccCCcCCcCCCccCCCceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHHHHHHH
Confidence            4669999999999999988899999999999999877899999999999998988999999999999999888 999999


Q ss_pred             hCCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEEEEC
Q 023433          159 EADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTID  238 (282)
Q Consensus       159 ~~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v~~n  238 (282)
                      +++.+|++||++++|+++.++++++|+++++.|+++.+..+.+++|++|.++|+++++++|||+|+|+|.|++++++++|
T Consensus        82 ~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~~~~~~l~~f~~~F~~~~~~~kGd~i~~~~~p~~~l~~~~~  161 (205)
T 4doo_A           82 EADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIE  161 (205)
T ss_dssp             HSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHGGGTTCCCCCTTCEEEEEEETTTEEEEEET
T ss_pred             cCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhccCCCCCCCCEEEEEEcCCCcEEEEEC
Confidence            99999999999985689999999999999999999988777899999999999877788999999999999999999999


Q ss_pred             CEEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 023433          239 GKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLI  280 (282)
Q Consensus       239 G~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll  280 (282)
                      |+++|+|+++.|++|+|+||||++|+||++|++|++++++|.
T Consensus       162 g~~~g~I~~~~f~~al~~iwLG~~pvsp~lk~~l~~~l~~l~  203 (205)
T 4doo_A          162 GNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAASLA  203 (205)
T ss_dssp             TEEEEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHT
T ss_pred             CeeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999985

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=5.3e-43  Score=311.70  Aligned_cols=195  Identities=22%  Similarity=0.386  Sum_probs=178.0

Q ss_pred             CCceeccCCCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-h
Q 023433           80 SATVVESKTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-L  153 (282)
Q Consensus        80 ~~~~~E~~TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~  153 (282)
                      ...++||+||++||+++.     ++++|+|+|+|+|.|.|+ +||||++|||+++..+ .+|+ +|.+.++++|.+++ |
T Consensus        11 ~~~v~e~~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~-~ikvYa~glYl~~~~~-~~L~-~~~~~~~~el~~~~~~   87 (217)
T 4dol_A           11 EDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAII-GVKVYAAGYYVNESIL-SGLS-AWTGRSADEIQRDSSL   87 (217)
T ss_dssp             CCEEECTTTCCEEESEECCTTCSSCEEEEEEEEEEEESSSS-EEEEEEEEEEECGGGT-GGGG-GGTTCCHHHHHTCHHH
T ss_pred             cceeecCCCCccCCCcccCCCCCCceEEEEEEEEEEEEeee-EEEEEEEEEEcCHHHH-HHHH-hhcCCCHHHHcccHHH
Confidence            347899999999999984     579999999999987543 7999999999998855 4576 89999999999888 9


Q ss_pred             HHHHhhCCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEE
Q 023433          154 NEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVL  233 (282)
Q Consensus       154 ~~~ll~~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l  233 (282)
                      +++|++.+.+|+|||+|+ |+++++++++++++++++||++.+ .+.+++|++|.++|++. +++|||+|+|+|.|++++
T Consensus        88 ~~~il~~~~~k~lri~~~-R~i~~~~l~~a~~e~i~~~~~~~~-~~~~~~l~~f~~~F~d~-~v~kGd~i~~~~~p~~~l  164 (217)
T 4dol_A           88 FVSIFQAQAEKSLQIVLV-RDVDGKTFWDALDEAISPRIKSPS-SEDTTALSTFCCIFQNR-PLNKGSVILLTWINTSNM  164 (217)
T ss_dssp             HHHHHHSSSCEEEEEEES-SCBCHHHHHHHHHHHHTTTCSSCC-HHHHHHHHHHHHHHTTC-CBCTTCEEEEEEEETTEE
T ss_pred             HHHHHcCCCceEEEEEEE-ecCCHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCC-cCCCCCEEEEEEcCCCCE
Confidence            999999999999999996 999999999999999999998765 36789999999999874 789999999999999999


Q ss_pred             EEEEC--C---EEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhh
Q 023433          234 WTTID--G---KEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLI  280 (282)
Q Consensus       234 ~v~~n--G---~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll  280 (282)
                      ++++|  |   +.+|+|+|++|++|||+||||++|+||++|++|+.++++||
T Consensus       165 ~i~~~~~g~~~~~~g~I~~~~f~~A~~~iwLG~~p~sp~lk~~L~~~l~~l~  216 (217)
T 4dol_A          165 LVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL  216 (217)
T ss_dssp             EEEEESSSCCCSCCEEEECHHHHHHHHHHHHSSSCSCHHHHHHHHHHHHHHC
T ss_pred             EEEEeCCCccccceeEeCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhh
Confidence            99996  5   56899999999999999999999999999999999999986

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}

Probab=100.00  E-value=8.6e-42  Score=308.69  Aligned_cols=194  Identities=21%  Similarity=0.289  Sum_probs=177.2

Q ss_pred             eccCCCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHH
Q 023433           84 VESKTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDL  157 (282)
Q Consensus        84 ~E~~TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~l  157 (282)
                      ++. +||+||+++.     +.|+|+|+|+|++.|.|+ +||||++|||+++. +..+|+.||.|++++||.++. |+++|
T Consensus        19 v~V-~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~-~vKvYAiGlYl~~~-~~~~L~~kwkgk~~~eL~~~~~ff~~i   95 (246)
T 4doi_A           19 LHV-DSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGK-FVIFTVIGVYLEGN-AVPSLSVKWKGKTTEELTESIPFFREI   95 (246)
T ss_dssp             EEE-TTEEECSEEECTTTCCEEEEEEEEEEEEEETTE-EEEEEEEEEEECTT-HHHHHHHHHTTCCHHHHHHCHHHHHHH
T ss_pred             eEE-CceECCCeeccCCCCCceeEecceeeceeeeee-EEEEEEEEEEechh-HHHHhhhhhcCCCHHHhcccHHHHHHH
Confidence            443 8999999983     579999999999987765 59999999999987 677899999999999999999 99999


Q ss_pred             hhCCcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEE
Q 023433          158 MEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWT  235 (282)
Q Consensus       158 l~~~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~--~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v  235 (282)
                      ++.+.+|+|||+++ |+++++++++++++++++||++.+..  ++++.|++|.++|++. .+++|+.|+|+|.|++++++
T Consensus        96 l~~p~eK~lrl~~i-r~l~g~~~~~al~e~l~~rlk~~g~~~~~e~~aL~~F~~~F~~~-~l~kGs~I~~~~~p~g~l~i  173 (246)
T 4doi_A           96 VTGAFEKFIKVTMK-LPLTGQQYSEKVTENCVAIWKQLGLYTDCEAKAVEKFLEIFKEE-TFPPGSSILFALSPTGSLTV  173 (246)
T ss_dssp             HHCSSCEEEEEEES-SCEEHHHHHHHHTTTHHHHHHHHTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEECTTSEEEE
T ss_pred             HcCCcceEEEEEEE-ecCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccC-cCCCCCEEEEEEeCCCcEEE
Confidence            99999999999997 99999999999999999999886544  4688999999999875 78999999999999999888


Q ss_pred             EE--CCE----EEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhC
Q 023433          236 TI--DGK----EVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK  282 (282)
Q Consensus       236 ~~--nG~----~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~~  282 (282)
                      .+  ||+    ..++|+++.||+|+|++|||++|+||++|+++++++++||++
T Consensus       174 ~~s~~G~~p~~~~~~I~s~~l~~All~~ylG~~pVsp~lK~sla~~la~ll~~  226 (246)
T 4doi_A          174 AFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRLSVAERLSQLMMK  226 (246)
T ss_dssp             EEESSSCCCSSCSEEEECHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             EEecCCccccccccccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Confidence            87  997    468999999999999999999999999999999999999975

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*

Probab=100.00  E-value=1.8e-40  Score=296.76  Aligned_cols=192  Identities=24%  Similarity=0.319  Sum_probs=174.1

Q ss_pred             CCCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHhhC
Q 023433           87 KTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEA  160 (282)
Q Consensus        87 ~TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll~~  160 (282)
                      .||++||+++.     ++|+|+|+|+|+|.|.| ++||||++|||+++. +.++|..||.|.+++||.++. |+++|++.
T Consensus        10 v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~-~~iKvYa~GlYl~~~-~~~~L~~k~kg~~a~el~~~~~f~~~li~~   87 (222)
T 1eyq_A           10 VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDI-AVASLAAKWKGKSSEELLETLDFYRDIISG   87 (222)
T ss_dssp             ETTEEECSEEECTTTCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEETT-HHHHHHHHHTTCCHHHHHTCHHHHHHHHHC
T ss_pred             EcceECCCccccCCCCCceEEeeeEEEEEEeec-eEEEEEEEEEEeCHH-HhhHhhhhhcCCCHHHhcccHHHHHHHHcC
Confidence            38999999884     57999999999999765 469999999999986 566888999999999999998 99999999


Q ss_pred             CcceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEE--E
Q 023433          161 DVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWT--T  236 (282)
Q Consensus       161 ~~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~--~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v--~  236 (282)
                      +.+|++||+++ |+++++++++++++++++||++.+..  ++++.|++|.++|+++ .++|||+|+|+|.|++++.+  +
T Consensus        88 ~~~k~irl~~i-~~v~g~~~~~a~~e~~~~~~~~~g~~~~~e~~~L~~f~~~F~~~-~~~kG~~i~~~~~p~g~l~is~~  165 (222)
T 1eyq_A           88 PFEKLIRGSKI-RELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPV-NFPPGASVFYRQSPDGILGLSFS  165 (222)
T ss_dssp             SSCEEEEEEES-SCEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEEETTTEEEEEEE
T ss_pred             CCceEEEEEEE-eCCCHHHHHHHHHHHHHHHHhccCccccchHHHHHHHHHHhCCC-CCCCCCEEEEEEcCCCceEEEEE
Confidence            99999999997 89999999999999999999876543  4578999999999765 48899999999999997766  5


Q ss_pred             ECCE----EEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhC
Q 023433          237 IDGK----EVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK  282 (282)
Q Consensus       237 ~nG~----~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~~  282 (282)
                      .||+    ..++|+++.||+|+|++|||++|+||++|+++++++++||++
T Consensus       166 ~~g~~p~~~~~~I~~~~~~~Al~~i~lG~~pvsp~lK~sl~~~l~~ll~~  215 (222)
T 1eyq_A          166 PDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNE  215 (222)
T ss_dssp             SSSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHC
T ss_pred             eCCccccccccccCCHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhh
Confidence            6898    789999999999999999999999999999999999999974

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}

Probab=100.00  E-value=2.9e-40  Score=292.64  Aligned_cols=189  Identities=21%  Similarity=0.299  Sum_probs=173.3

Q ss_pred             CCccCCCccc--CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHhhCCcce
Q 023433           88 TGTSFPSVLG--GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCM  164 (282)
Q Consensus        88 TGv~FP~~l~--~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll~~~~~~  164 (282)
                      .||+||+.+.  +.|+|+|+|+|++.|.|+ +||||++|||+++++++.+| .||.+.+++||.++. |+++|++.+.+|
T Consensus         8 ~gv~FP~~~~~~~~L~L~GaGvR~~~I~~~-~iKvYa~GlYl~~~~~~~~l-~kwk~~~~~eL~~~~~f~~~ii~~p~eK   85 (208)
T 4dok_A            8 HEVPFPPQIITSKPLSLLGQGITDIEIHFL-QVKFTAIGVYLDPSDVKTHL-DNWKGKTGKELAGDDDFFDALASAEMEK   85 (208)
T ss_dssp             TTEEECSEEESSSEEEEEEEEEEEEEETTE-EEEEEEEEEEECHHHHHHHC-GGGTTCCHHHHHTCHHHHHHHHHSSSCE
T ss_pred             ccEECCccccCCCcceeeeeeeeeEeeeee-EEEEEEEEEEecHHHHHHHH-hhhcCCCHHHHccchHHHHHHhcCcccc
Confidence            7999999885  679999999999988765 69999999999998899888 899999999999999 999999999999


Q ss_pred             EEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCC--CcHHHHHHHHHhccccCCCCCCCEEEEEEecC-CEEE--EEECC
Q 023433          165 TVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELLQKFTSQFKDEYKIPKGSVIELSKERG-HVLW--TTIDG  239 (282)
Q Consensus       165 ~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~--~~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~-~~l~--v~~nG  239 (282)
                      .+||+++ |+++++++++++++++++||++.+..  .+++.|++|.++|++. .++||++|+|+|.|+ +.|+  +..||
T Consensus        86 ~iri~~i-r~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL~~f~~~F~~~-~~~~G~~I~~~~~p~~G~L~i~~s~~G  163 (208)
T 4dok_A           86 VIRVVVI-KEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSK-YFKANSVITYHFSAKDGICEIGFETEG  163 (208)
T ss_dssp             EEEEEES-SCEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHTC-EECTTCEEEEEECSSSCCEEEEEECTT
T ss_pred             eEEEEEE-ecCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhccC-CCCCCCEEEEEEeCCCCeEEEEEEeCC
Confidence            9999997 99999999999999999999998764  4689999999999875 799999999999988 5555  55699


Q ss_pred             EEEE--EECCHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHhh
Q 023433          240 KEVG--SIQSKLLCRSLLDLYI-GEEPFDRKAKEDIELNLSSLI  280 (282)
Q Consensus       240 ~~~G--~I~s~~f~~Alf~IwL-G~~Pvsp~lK~~llg~l~~ll  280 (282)
                      ++.+  +|+|+.||+|+|++|| |++|+||++|+++..++++||
T Consensus       164 ~~~~~~~I~~~~l~~All~~yl~G~~pvsp~lK~sla~~l~~ll  207 (208)
T 4dok_A          164 KEEEKLKVENANVVGMMQRWYLSGSRGVSPSTIVSIADSISAVL  207 (208)
T ss_dssp             SCCEEEEECCHHHHHHHHHHHSCTTTCSCHHHHHHHHHHHHHHH
T ss_pred             EeccccccCCHHHHHHHHHHeeCCCCCCCHHHHHHHHHHHHHhh
Confidence            8664  7999999999999999 999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1eyqa_	212	d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicag	1e-36

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  127 bits (321), Expect = 1e-36
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 21/217 (9%)

Query: 80  SATVVESKTGTSFPSVL--GGSRK---LLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKK 134
           +A  VE      +P+V+    + K   L G G R  ++ G   I   A GVY +   V  
Sbjct: 3   TAITVE---NLEYPAVVTSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDIAVAS 58

Query: 135 ILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQ 193
            L+ K+   S  EL E      D++       +R   I   LS         E+  + L+
Sbjct: 59  -LAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRE-LSGPEYSRKVMENCVAHLK 116

Query: 194 KFGG--SDNKELLQKFTSQFKDEYKIPKGSVIELSKERGHVL------WTTIDGKEVGSI 245
             G       E +QKF   FK     P G+ +   +    +L       T+I  KE   I
Sbjct: 117 SVGTYGDAEAEAMQKFAEAFKPVN-FPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALI 175

Query: 246 QSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK 282
           ++K +  ++L+  IGE       K  +   L +L+ +
Sbjct: 176 ENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNE 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1eyqa_	212	Chalcone isomerase {Alfalfa (Medicago sativa) [Tax	100.0

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=7.5e-41  Score=294.96  Aligned_cols=191  Identities=25%  Similarity=0.335  Sum_probs=173.5

Q ss_pred             CCccCCCccc-----CCceeeeeEeEEEEeeceeeeEEEEEEEEeechhhHHHhhhhccCCchhHhhhhh-hHHHHhhCC
Q 023433           88 TGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEAD  161 (282)
Q Consensus        88 TGv~FP~~l~-----~~l~L~G~GvR~k~~lg~~~ikVYaagLY~~~~~~~~~L~~k~~~~s~~el~~~~-~~~~ll~~~  161 (282)
                      .|++||.++.     ++|+|+|+|+|++.+.| ++||||++|||+++.++. .|..+|.+++.+|+.++. |+++|++.+
T Consensus         8 ~~v~fP~~i~~~~~~~~l~L~G~GvR~~~i~~-~~ikvYa~GlYl~~~~~~-~l~~~~~~k~~~el~~~~~~~~~il~~~   85 (212)
T d1eyqa_           8 ENLEYPAVVTSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDIAVA-SLAAKWKGKSSEELLETLDFYRDIISGP   85 (212)
T ss_dssp             TTEEECSEEECTTTCCEEEEEEEEEEEEEETT-EEEEEEEEEEEEETTHHH-HHHHHHTTCCHHHHHTCHHHHHHHHHCS
T ss_pred             CCccCCCcccCCCCCCceEEeeeEEeeEEEee-eEEEEEEEEEEcccchhH-HHhhhhcccchhhhhccHHHHHHHhcCC
Confidence            3899999984     46999999999998654 369999999999998765 577899999999998888 999999999


Q ss_pred             cceEEEEEEEecCCChHHHHHHHHHHHHHhhhcCCCCC--cHHHHHHHHHhccccCCCCCCCEEEEEEecCCEEEEEE--
Q 023433          162 VCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSD--NKELLQKFTSQFKDEYKIPKGSVIELSKERGHVLWTTI--  237 (282)
Q Consensus       162 ~~~~lrL~~~~R~v~~~~l~daf~~sl~~rl~~~~~~~--~~~~L~~f~~~F~~~~kl~kGd~i~~~~~p~~~l~v~~--  237 (282)
                      .+|++||+++ |+++.+|++|+|++++.+|+++.+...  +++.|++|+++|+++ +++|||.|+|+|.|++++.+++  
T Consensus        86 ~~k~iriv~v-r~v~~~~l~dal~e~l~~r~~~~~~~~~~~~~~l~~f~~~F~~~-~~~kG~~i~~~~~p~g~l~vs~~~  163 (212)
T d1eyqa_          86 FEKLIRGSKI-RELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPV-NFPPGASVFYRQSPDGILGLSFSP  163 (212)
T ss_dssp             SCEEEEEEES-SCEEHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-EECTTCEEEEEEETTTEEEEEEES
T ss_pred             cceEEEEEEE-ecCCHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHhcCC-ccCCCCEEEEEECCCCcEEEEEec
Confidence            9999999997 899999999999999999999887653  467899999999875 6899999999999999999985  


Q ss_pred             ----CCEEEEEECCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhC
Q 023433          238 ----DGKEVGSIQSKLLCRSLLDLYIGEEPFDRKAKEDIELNLSSLIQK  282 (282)
Q Consensus       238 ----nG~~~G~I~s~~f~~Alf~IwLG~~Pvsp~lK~~llg~l~~ll~~  282 (282)
                          +|+.+|+|++++||+|+|++|||++|+||++|+++++++++|+++
T Consensus       164 ~~~~~~~~~g~I~~~~~~~al~~~yLGd~Pvs~~lK~s~~~~l~~l~~~  212 (212)
T d1eyqa_         164 DTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNE  212 (212)
T ss_dssp             SSSCCSSCSEEEECHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCceeeEEECCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcC
Confidence                567899999999999999999999999999999999999999985