Citrus Sinensis ID: 023440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHcccccccccccccEEcHcccccccccccccccEEEEccEEcccccccccccccEEEEEEEccccccccEEHHEEEEcccccccEEEccccccccccHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccHHHccccccccccccccccc
Coil and Loop (DISEMBL)
malssisplsikslnfcsssskgpyqlhalskpLWVACQissktesdgqfpdcsnnqcagpyaklkNWRVFVSTALAAAVVASCSSNISALADLNKYeaetrgefgigsaaqfgsADLRKAVHVKEnfrranftsadmresdfsgskfngAYLEKAVAYKAnftgadlsdTLMDRMVLNEANLTNAVLVRTVLtrsdlggaiiegadfSDAVIDLAQKQALCKyangtnpitgvstrkslgcgnsrrnaygspsspllsappqklldrdgfcdsgtglcdak
Flexible Loop (DISEMBL)
malssisplsiKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENfrranftsadmresdfsgSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYangtnpitgvstrKSLGCGNSRRnaygspsspllsappqklLDRDGFCDSGTGLCDAK
Low Complexity Region (SEG)
MAlssisplsikslNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRvfvstalaaavvascssnisaLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGspsspllsappqkllDRDGFCDSGTGLCDAK
Disordered region (IsUnstruct)
************************YQLHALSKPLWVACQIS**********DCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR****************KFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGV************************************************
Disordered Region (DISOPRED)
***SSISPLSIK*********************LWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNA***************LLDRDGFCDSGTGLC***
Disordered Region (DISEMBL)
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISS********PDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Disordered Region (DISPRO)
**********************GPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTN*****S*R****CG*S***********LLSAPPQKLLDRDGFCDSGT*LC***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q8H1Q1	280	Thylakoid lumenal protein	yes	no	0.982	0.989	0.715	1e-101
O22160	224	Thylakoid lumenal 15 kDa	no	no	0.397	0.5	0.365	3e-09
Q52118	295	Uncharacterized protein i	N/A	no	0.354	0.338	0.342	1e-06
Q55837	166	Uncharacterized protein s	N/A	no	0.294	0.5	0.375	1e-06
P81760	236	Thylakoid lumenal 17.4 kD	no	no	0.400	0.478	0.279	4e-06
P73709	331	Uncharacterized protein s	N/A	no	0.354	0.302	0.323	0.0002
P74297	574	Serine/threonine-protein	N/A	no	0.322	0.158	0.326	0.0008

>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1

 Score =  368 bits (945), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/285 (71%), Positives = 231/285 (81%), Gaps = 8/285 (2%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--- 57
           MA SS+SPL +KSL+   SSS      +   + L    Q+SS+  S+ +  D SN +   
Sbjct: 1   MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSR--SNLEIKDSSNTREGC 58

Query: 58  CAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSAD 117
           C+   A+   W+  +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSAD
Sbjct: 59  CSS--AESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSAD 115

Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
           L K VH  ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMV
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMV 175

Query: 178 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTR 237
           LNEANLTNAVLVR+VLTRSDLGGA IEGADFSDAVIDL QKQALCKYA GTNP+TGV TR
Sbjct: 176 LNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTR 235

Query: 238 KSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
           KSLGCGNSRRNAYGSPSSPLLSAPPQ+LL RDGFCD  TGLCD K
Sbjct: 236 KSLGCGNSRRNAYGSPSSPLLSAPPQRLLGRDGFCDEKTGLCDVK 280

Arabidopsis thaliana (taxid: 3702)

>sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana GN=At2g44920 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 11/123 (8%)

Query: 126 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--E 180
           +   R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  +
Sbjct: 106 QTLIRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTK 160

Query: 181 ANLTNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKS 239
            NLTNA L   TV   +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +
Sbjct: 161 VNLTNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDT 220

Query: 240 LGC 242
           L C
Sbjct: 221 LLC 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 5/105 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKA---VAY--KANF 163
           S A   +ADL++A     N   A+ T+A++ ++D      +GA L  A   +AY  +A+ 
Sbjct: 170 SNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADL 229

Query: 164 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADF 208
           + A+LS+  + R  L++ANL++A L    L R+DL  AI++GA+ 
Sbjct: 230 SNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANL 274

Erwinia stewartii (taxid: 66271)

>sp|Q55837|Y516_SYNY3 Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0516 PE=4 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN---- 182
           + R  N  +A +  SD SG+  +G  L +A+  +AN TGA+LS+T +    L EAN    
Sbjct: 49  DLREFNLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLAGA 108

Query: 183 -LTNAVLVRTVLTRSDLGGAIIEGADFS 209
            L+ A L R+ L   DL GA ++GA+ +
Sbjct: 109 DLSGANLERSFLRDVDLTGANLKGANLA 136

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At5g53490 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 125 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 184
           + N +    ++A M  + F G+      + KA A +A+F G + ++ ++DR+   ++NL 
Sbjct: 123 QTNLKGKTLSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLK 182

Query: 185 NAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 242
            AV   TVL+ S    A +E   F D +I     Q +C+     N       R  LGC
Sbjct: 183 GAVFRNTVLSGSTFEEANLEDVVFEDTIIGYIDLQKICR-----NESINEEGRLVLGC 235

Arabidopsis thaliana (taxid: 3702)

>sp|P73709|Y1819_SYNY3 Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1819 PE=4 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A+  + + + A+    N  R N T      S+ S ++ N A L +A   KAN   A+L
Sbjct: 229 SEAEMTAVNCQGAIMTHVNLNRTNLTG-----SNLSFTRMNSADLSRANLTKANLQEAEL 283

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
            +    R  L EAN  NA LVR  L  +++ GA  +GA   D  +
Sbjct: 284 IEAFFARANLTEANFINANLVRADLMSANMVGADFQGATMPDGQV 328

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spkB PE=1 SV=1

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 71  FVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR 130
            V   LA A V   +   + L + N  +AE        + A FG A L+  +    N   
Sbjct: 456 LVGIVLAKAFVPGINCYQANLTNANFEQAEL-------TRADFGKARLKNVIFKGANLSD 508

Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           A F  AD+R +D  G+  NG   + A    ANF+GADL
Sbjct: 509 AYFGYADLRGADLRGANLNGVNFKYANLQGANFSGADL 546

Protein kinase required for cell motility, but not for phototaxis.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
255583634	280	conserved hypothetical protein [Ricinus	0.992	1.0	0.794	1e-121
224071571	275	predicted protein [Populus trichocarpa]	0.975	1.0	0.762	1e-117
297741150	261	unnamed protein product [Vitis vinifera]	0.925	1.0	0.773	1e-113
359474379	596	PREDICTED: uncharacterized protein LOC10	0.925	0.437	0.773	1e-113
449459702	279	PREDICTED: thylakoid lumenal protein At1	0.982	0.992	0.733	1e-111
388505216	273	unknown [Lotus japonicus]	0.932	0.963	0.724	1e-107
356540500	260	PREDICTED: thylakoid lumenal protein At1	0.921	1.0	0.734	1e-106
357481963	262	Thylakoid lumenal protein [Medicago trun	0.929	1.0	0.705	1e-103
357481965	232	Thylakoid lumenal protein [Medicago trun	0.765	0.931	0.847	1e-102
116785652	291	unknown [Picea sitchensis]	0.836	0.810	0.772	1e-102

>gi|255583634|ref|XP_002532572.1| conserved hypothetical protein [Ricinus communis] gi|223527699|gb|EEF29806.1| conserved hypothetical protein [Ricinus communis]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/282 (79%), Positives = 240/282 (85%), Gaps = 2/282 (0%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MA +SISPLSIKS+N   SSS+ PY L + SKP  + CQ++  TE + +  DCS  +   
Sbjct: 1   MAFTSISPLSIKSVNISPSSSRSPYHLPSQSKPFHILCQLA--TEREDRILDCSTTRYKV 58

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
            ++K KNWR  VSTALAAA   +    + A ADLNK+EAE RGEFGIGSAAQFGSADLRK
Sbjct: 59  HHSKPKNWRTLVSTALAAAAAVNLGFGLPAAADLNKFEAELRGEFGIGSAAQFGSADLRK 118

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 180
           AVHV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 119 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 178

Query: 181 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 240
           ANLTNAVLVR+VLTRSDLGGAIIEGADFSDAVIDL QKQALCKYANGTN ITGVSTRKSL
Sbjct: 179 ANLTNAVLVRSVLTRSDLGGAIIEGADFSDAVIDLTQKQALCKYANGTNSITGVSTRKSL 238

Query: 241 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
           GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCD  TGLCDAK
Sbjct: 239 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDEATGLCDAK 280

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071571|ref|XP_002303521.1| predicted protein [Populus trichocarpa] gi|222840953|gb|EEE78500.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/282 (76%), Positives = 237/282 (84%), Gaps = 7/282 (2%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MA +SIS +SIKS N  +     P+++ +LSKP  +A Q+   TE   QF DCS N    
Sbjct: 1   MAFTSISSMSIKSPNIST-----PHRILSLSKPFRIAYQL--DTERGNQFADCSKNGYEV 53

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             AK KNW   VST L AA ++  S N+ A+ADLN++EAETRGEFGIGSAAQFGSADLRK
Sbjct: 54  ETAKAKNWARVVSTTLVAAAISFSSCNLPAVADLNRFEAETRGEFGIGSAAQFGSADLRK 113

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 180
           AVH+ ENFRRANFT+ADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 114 AVHLNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 173

Query: 181 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 240
           +NLTNAVLVR+VLTRSDLGGA+I GADFSDAVIDL QKQALCKYA+GTNPITGVSTR SL
Sbjct: 174 SNLTNAVLVRSVLTRSDLGGALIAGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASL 233

Query: 241 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
           GCGNSRRNAYG+PSSPLLSAPPQKLLDRDGFCD GTGLCDAK
Sbjct: 234 GCGNSRRNAYGTPSSPLLSAPPQKLLDRDGFCDQGTGLCDAK 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741150|emb|CBI31881.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/282 (77%), Positives = 231/282 (81%), Gaps = 21/282 (7%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSS+SPL I         SK P  L + SKP  V C+I  +    G +  C  N    
Sbjct: 1   MALSSVSPLYI---------SKSPNHLQSPSKPFTVVCRIELQR---GNY--CRAN---- 42

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             A+ K W+  VSTALAAAVV + S  + A+ADLNKYEAETRGEFGIGSAAQFGSADLRK
Sbjct: 43  --AESKKWQRLVSTALAAAVV-TLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRK 99

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 180
           AVHV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 100 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 159

Query: 181 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 240
           ANLTNAVL RTVLTRSDLGGA+IEGADFSDAVIDL QKQALCKYA+GTNPITGVSTR SL
Sbjct: 160 ANLTNAVLARTVLTRSDLGGAVIEGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASL 219

Query: 241 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
           GCGNSRR+AYGSPSSPLLSAPP KLLDRDGFCD GTGLCDAK
Sbjct: 220 GCGNSRRSAYGSPSSPLLSAPPPKLLDRDGFCDEGTGLCDAK 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474379|ref|XP_002265958.2| PREDICTED: uncharacterized protein LOC100250522 isoform 2 [Vitis vinifera]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/282 (77%), Positives = 231/282 (81%), Gaps = 21/282 (7%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSS+SPL I         SK P  L + SKP  V C+I  +    G +  C  N    
Sbjct: 336 MALSSVSPLYI---------SKSPNHLQSPSKPFTVVCRIELQR---GNY--CRAN---- 377

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
             A+ K W+  VSTALAAAVV + S  + A+ADLNKYEAETRGEFGIGSAAQFGSADLRK
Sbjct: 378 --AESKKWQRLVSTALAAAVV-TLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRK 434

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 180
           AVHV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE
Sbjct: 435 AVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 494

Query: 181 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 240
           ANLTNAVL RTVLTRSDLGGA+IEGADFSDAVIDL QKQALCKYA+GTNPITGVSTR SL
Sbjct: 495 ANLTNAVLARTVLTRSDLGGAVIEGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASL 554

Query: 241 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
           GCGNSRR+AYGSPSSPLLSAPP KLLDRDGFCD GTGLCDAK
Sbjct: 555 GCGNSRRSAYGSPSSPLLSAPPPKLLDRDGFCDEGTGLCDAK 596

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459702|ref|XP_004147585.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cucumis sativus] gi|449520611|ref|XP_004167327.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Cucumis sativus]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/281 (73%), Positives = 230/281 (81%), Gaps = 4/281 (1%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MALSSIS LS+K L   SS S+ P  L    K + +  QI+ + +   Q  DCS  +  G
Sbjct: 1   MALSSISSLSVKCLPLNSSKSRHPCSLQT-RKQISMVSQINPQKD---QTQDCSERKHIG 56

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
              + K W+  VSTALAAA V   SS + ++A+LNKYEA+TRGEFGIGSAAQ+GSADLRK
Sbjct: 57  KITEPKRWQKLVSTALAAAAVIGFSSGMPSVAELNKYEADTRGEFGIGSAAQYGSADLRK 116

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 180
           AVH+ ENFRRANFTSADMRESDFSG  FNGAYLEKAVAYK NF+GADLSDTLMDRMVLNE
Sbjct: 117 AVHINENFRRANFTSADMRESDFSGCTFNGAYLEKAVAYKTNFSGADLSDTLMDRMVLNE 176

Query: 181 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 240
           AN TNAVLVR+VLTRSDLGGAII GADFSDAVIDL QKQALCKYA+GTNP+TGVSTR SL
Sbjct: 177 ANFTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASL 236

Query: 241 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDA 281
           GCGNSRRNAYG+PSSPLLSAPPQ+LLDRDGFCD  TGLC+A
Sbjct: 237 GCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQDTGLCEA 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505216|gb|AFK40674.1| unknown [Lotus japonicus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/287 (72%), Positives = 231/287 (80%), Gaps = 24/287 (8%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQL------HALSKPLWVACQISSKTESDGQFPDCS 54
           MAL+S+SPLSI ++N    SS+   +L      H  S P+ V CQ++S  +     P  S
Sbjct: 2   MALNSLSPLSI-NINSLHVSSRPTSELSNSLHFHPKSSPI-VLCQMNSNRD----HPQES 55

Query: 55  NNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFG 114
                      K W   VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFG
Sbjct: 56  -----------KKWGKLVSATLAAAVIA-FSSDMSALADLNKFEAEIRGEFGIGSAAQFG 103

Query: 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 174
           SADLRKAVHV ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMD
Sbjct: 104 SADLRKAVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMD 163

Query: 175 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGV 234
           RMVLNEANLTNA+LVRTVLTRSDLGG+IIEGADFSDAV+DL QK ALCKYA+GTNP+TGV
Sbjct: 164 RMVLNEANLTNAILVRTVLTRSDLGGSIIEGADFSDAVLDLTQKLALCKYASGTNPVTGV 223

Query: 235 STRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDA 281
           STR SLGCGN RRNAYG+PSSPLLSAPPQKLL+RDGFCD  TGLCD+
Sbjct: 224 STRVSLGCGNKRRNAYGTPSSPLLSAPPQKLLNRDGFCDEATGLCDS 270

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540500|ref|XP_003538726.1| PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic-like [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/282 (73%), Positives = 228/282 (80%), Gaps = 22/282 (7%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MAL+S+SPLSI SL+  SSS+      H+ S P+ V    ++++                
Sbjct: 1   MALNSLSPLSINSLHVSSSSTSKISHSHSKSFPVVVKSVANAES---------------- 44

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
                  W   VS  LAAAV+A  SS++SALADLNK+EAE RGEFGIGSAAQFGSADLRK
Sbjct: 45  -----TKWGKVVSATLAAAVIA-FSSDMSALADLNKFEAEMRGEFGIGSAAQFGSADLRK 98

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 180
           AVHV ENFRRANFT+ADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMVLNE
Sbjct: 99  AVHVNENFRRANFTAADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNE 158

Query: 181 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 240
           ANLTNA+L+RTVLTRSDLGGAIIEGADFSDAV+DL QKQALCKYA+GTNP+TGVSTR SL
Sbjct: 159 ANLTNAILLRTVLTRSDLGGAIIEGADFSDAVLDLPQKQALCKYASGTNPVTGVSTRVSL 218

Query: 241 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
           GCGN RRNAYGSPSSPLLSAPPQKLLDRDGFCD  TGLCDAK
Sbjct: 219 GCGNKRRNAYGSPSSPLLSAPPQKLLDRDGFCDDATGLCDAK 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481963|ref|XP_003611267.1| Thylakoid lumenal protein [Medicago truncatula] gi|355512602|gb|AES94225.1| Thylakoid lumenal protein [Medicago truncatula]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/282 (70%), Positives = 221/282 (78%), Gaps = 20/282 (7%)

Query: 1   MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAG 60
           MAL+S +PLSI S +            +  S  +  + Q+  K   +   P  SN     
Sbjct: 1   MALNSFTPLSINSHH---------VSCYPSSSKVSKSSQVICKMSLNNDHPQESN----- 46

Query: 61  PYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRK 120
                KNW   VS  LAAAV+   SS++SALADLNK+EAE RGEFGIGSAAQFGSADL+K
Sbjct: 47  -----KNWGKLVSATLAAAVIV-FSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKK 100

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 180
            VHV ENFRRANFTSADMRESDFSGS FNGAY+EKAVA+KANFTGADLSDTLMDRMVLNE
Sbjct: 101 TVHVNENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNE 160

Query: 181 ANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSL 240
           ANLTNA+L RTVLTRSDLGGAIIEGADFSDAV+DL QK ALCKYA+GTNP+TGVSTR SL
Sbjct: 161 ANLTNAILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSL 220

Query: 241 GCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
           GCGN RRNAYG+PSSPLLSAPPQKLLDRDGFCD  +GLCD+K
Sbjct: 221 GCGNKRRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481965|ref|XP_003611268.1| Thylakoid lumenal protein [Medicago truncatula] gi|355512603|gb|AES94226.1| Thylakoid lumenal protein [Medicago truncatula]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/217 (84%), Positives = 198/217 (91%), Gaps = 1/217 (0%)

Query: 66  KNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVK 125
           KNW   VS  LAAAV+   SS++SALADLNK+EAE RGEFGIGSAAQFGSADL+K VHV 
Sbjct: 17  KNWGKLVSATLAAAVIV-FSSDMSALADLNKFEAEVRGEFGIGSAAQFGSADLKKTVHVN 75

Query: 126 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN 185
           ENFRRANFTSADMRESDFSGS FNGAY+EKAVA+KANFTGADLSDTLMDRMVLNEANLTN
Sbjct: 76  ENFRRANFTSADMRESDFSGSTFNGAYMEKAVAFKANFTGADLSDTLMDRMVLNEANLTN 135

Query: 186 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS 245
           A+L RTVLTRSDLGGAIIEGADFSDAV+DL QK ALCKYA+GTNP+TGVSTR SLGCGN 
Sbjct: 136 AILSRTVLTRSDLGGAIIEGADFSDAVLDLPQKLALCKYASGTNPVTGVSTRVSLGCGNK 195

Query: 246 RRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 282
           RRNAYG+PSSPLLSAPPQKLLDRDGFCD  +GLCD+K
Sbjct: 196 RRNAYGTPSSPLLSAPPQKLLDRDGFCDEASGLCDSK 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116785652|gb|ABK23807.1| unknown [Picea sitchensis]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/242 (77%), Positives = 206/242 (85%), Gaps = 6/242 (2%)

Query: 40  ISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA 99
           I+ K  +D    D    Q A    + KNW+  ++ ALA  V+ +    ++A ADLNKYEA
Sbjct: 52  ITGKISTDQHKKDA---QPASATPESKNWQRCLAAALATIVIGT---GMNAEADLNKYEA 105

Query: 100 ETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY 159
           ETRGEFGIGSAAQFGSA+LRK VH  ENFRRANFTSAD+RESDFSGS FNGAYLEKAVAY
Sbjct: 106 ETRGEFGIGSAAQFGSAELRKTVHANENFRRANFTSADIRESDFSGSTFNGAYLEKAVAY 165

Query: 160 KANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ 219
           K NFTGADLSDTLMDRMVLNEANLTNAVLVR+VLTRSDLGGAIIEGADFSDAVID  QKQ
Sbjct: 166 KTNFTGADLSDTLMDRMVLNEANLTNAVLVRSVLTRSDLGGAIIEGADFSDAVIDFTQKQ 225

Query: 220 ALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLC 279
           ALCKYA+GTNPITG+STRKSLGCGNSRRNAYG+PS+PLLSAPP+KLLD+DGFCDS TGLC
Sbjct: 226 ALCKYASGTNPITGISTRKSLGCGNSRRNAYGTPSAPLLSAPPEKLLDKDGFCDSSTGLC 285

Query: 280 DA 281
           DA
Sbjct: 286 DA 287

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:2202033	280	AT1G12250 "AT1G12250" [Arabido	0.914	0.921	0.644	1.4e-80
TAIR|locus:2055023	224	AT2G44920 "AT2G44920" [Arabido	0.382	0.482	0.378	1.2e-10
UNIPROTKB|Q0BZZ2	245	HNE_2256 "Pentapeptide repeat	0.343	0.395	0.383	8.3e-07
UNIPROTKB|Q74B06	254	GSU2404 "Pentapeptide repeat d	0.343	0.381	0.352	5.1e-06
TIGR_CMR|GSU_2404	254	GSU_2404 "pentapeptide repeat	0.343	0.381	0.352	5.1e-06
TAIR|locus:2160230	298	FIP2 [Arabidopsis thaliana (ta	0.354	0.335	0.33	0.00036
UNIPROTKB|Q2GFB5	607	ECH_1083 "Pentapeptide repeat	0.379	0.176	0.325	0.00051
TIGR_CMR|ECH_1083	607	ECH_1083 "pentapeptide repeat	0.379	0.176	0.325	0.00051
UNIPROTKB|Q2GIU2	564	APH_1170 "Pentapeptide repeat	0.407	0.203	0.295	0.00077
TIGR_CMR|APH_1170	564	APH_1170 "pentapeptide repeat	0.407	0.203	0.295	0.00077

TAIR|locus:2202033 AT1G12250 "AT1G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 172/267 (64%), Positives = 190/267 (71%)

Query:    18 SSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--CAGPYAKLKNWRXXXXXX 75
             SS S+ PY  H   + L    Q+SS+  S+ +  D SN +  C    A+   W+      
Sbjct:    21 SSVSRSPY--H-FQRYLLRRLQLSSR--SNLEIKDSSNTREGCCSS-AESNTWKRILSAA 74

Query:    76 XXXXXXXXXXXXXXXLADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTS 135
                            +A+LN++EA+TRGEFGIGSAAQ+GSADL K VH  ENFRRANFTS
Sbjct:    75 MAAAVIASSSGVPA-MAELNRFEADTRGEFGIGSAAQYGSADLSKTVHSNENFRRANFTS 133

Query:   136 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTR 195
             ADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMVLNEANLTNAVLVR+VLTR
Sbjct:   134 ADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLTR 193

Query:   196 SDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGXXXX 255
             SDLGGA IEGADFSDAVIDL QKQALCKYA GTNP+TGV TRKSLGCGNSRRNAYG    
Sbjct:   194 SDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGCGNSRRNAYGSPSS 253

Query:   256 XXXXXXXXXXXDRDGFCDSGTGLCDAK 282
                         RDGFCD  TGLCD K
Sbjct:   254 PLLSAPPQRLLGRDGFCDEKTGLCDVK 280

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2055023 AT2G44920 "AT2G44920" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 45/119 (37%), Positives = 67/119 (56%)

Query:   130 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--EANLT 184
             R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  + NLT
Sbjct:   110 RQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTKVNLT 164

Query:   185 NAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 242
             NA L   TV   +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +L C
Sbjct:   165 NANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLC 223

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q0BZZ2 HNE_2256 "Pentapeptide repeat domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 132 (51.5 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 41/107 (38%), Positives = 56/107 (52%)

Query:   110 AAQFGSADLRKAVHVKENFRRANFTSADMRE-----SDFSGSKFNGAYLEKAVAYKANFT 164
             +A    ADLR A      F  A F +A M++     +DFS ++  GA LEKA     NF 
Sbjct:    82 SANVTGADLRGADLTSARFADATFNNARMQDVLASGADFSRARLQGANLEKARLIGVNFE 141

Query:   165 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
             GA L   L  R  L  A+L+ A    T+L R++L G I +GA+ S+A
Sbjct:   142 GASL---LFAR--LETADLSGANCTGTILDRANLRGTIFDGANLSEA 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74B06 GSU2404 "Pentapeptide repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 126 (49.4 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 36/102 (35%), Positives = 53/102 (51%)

Query:   110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
             A  F  A+L  A     +   A F +ADMR +  SG     AY+  A    AN +GAD+ 
Sbjct:    76 ACNFTGANLTGAQMDGASLDEAIFDTADMRSAHCSG-----AYIHHAKFVGANLSGADMR 130

Query:   170 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
                +++   ++ANLTNA      L  ++LGGA++ G +FS A
Sbjct:   131 KVNVEKGNFSQANLTNANFSGAKLKYANLGGAVLRGTNFSFA 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2404 GSU_2404 "pentapeptide repeat domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 126 (49.4 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 36/102 (35%), Positives = 53/102 (51%)

Query:   110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
             A  F  A+L  A     +   A F +ADMR +  SG     AY+  A    AN +GAD+ 
Sbjct:    76 ACNFTGANLTGAQMDGASLDEAIFDTADMRSAHCSG-----AYIHHAKFVGANLSGADMR 130

Query:   170 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
                +++   ++ANLTNA      L  ++LGGA++ G +FS A
Sbjct:   131 KVNVEKGNFSQANLTNANFSGAKLKYANLGGAVLRGTNFSFA 172

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160230 FIP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00036, P = 0.00036
 Identities = 33/100 (33%), Positives = 47/100 (47%)

Query:   112 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
             +F SA+LR A+    N + AN   A +    F G+    A+L+ A    AN  GA+L   
Sbjct:   192 EFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGA 251

Query:   172 LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
              +    L+ AN   A L R  L   +L  A +EGA+   A
Sbjct:   252 NLKGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGA 291

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0006813 "potassium ion transport" evidence=IEA;ISS

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q2GFB5 ECH_1083 "Pentapeptide repeat protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 115 (45.5 bits), Expect = 0.00051, P = 0.00051
 Identities = 40/123 (32%), Positives = 58/123 (47%)

Query:   104 EFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK-- 160
             EFG   S A F   DLR +V    N   ANFT A++  S F  S   GA    A   K  
Sbjct:    66 EFGNNLSGADFSDLDLRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINANLSKSN 125

Query:   161 --------ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 212
                     ANFT ADL  T + +  +N  N + + +  ++LT  ++ G++   A+FS+  
Sbjct:   126 IKNSNLNFANFTSADLQKTTITQSKINNTNFSYSDMRFSILT--EVNGSL---ANFSETE 180

Query:   213 IDL 215
             + L
Sbjct:   181 LKL 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_1083 ECH_1083 "pentapeptide repeat protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 115 (45.5 bits), Expect = 0.00051, P = 0.00051
 Identities = 40/123 (32%), Positives = 58/123 (47%)

Query:   104 EFGIG-SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK-- 160
             EFG   S A F   DLR +V    N   ANFT A++  S F  S   GA    A   K  
Sbjct:    66 EFGNNLSGADFSDLDLRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINANLSKSN 125

Query:   161 --------ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 212
                     ANFT ADL  T + +  +N  N + + +  ++LT  ++ G++   A+FS+  
Sbjct:   126 IKNSNLNFANFTSADLQKTTITQSKINNTNFSYSDMRFSILT--EVNGSL---ANFSETE 180

Query:   213 IDL 215
             + L
Sbjct:   181 LKL 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GIU2 APH_1170 "Pentapeptide repeat family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 113 (44.8 bits), Expect = 0.00077, P = 0.00077
 Identities = 34/115 (29%), Positives = 51/115 (44%)

Query:   111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             ++F + DL+ A     +      TS+D+  S F GS    A L+K   Y A F+ A+L+ 
Sbjct:    88 SRFENVDLKFANLALADLSGVKITSSDIGYSSFIGSDMQMASLDKVTGYGATFSNAELTL 147

Query:   171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYA 225
               +    L +AN  +A     V+  SDL      GA+   A I  +  Q    YA
Sbjct:   148 VSITESTLRKANFQDAEASNVVIQNSDLTEVSFFGANLRSARIQQSLLQHSMMYA 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|APH_1170 APH_1170 "pentapeptide repeat family protein" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 113 (44.8 bits), Expect = 0.00077, P = 0.00077
 Identities = 34/115 (29%), Positives = 51/115 (44%)

Query:   111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             ++F + DL+ A     +      TS+D+  S F GS    A L+K   Y A F+ A+L+ 
Sbjct:    88 SRFENVDLKFANLALADLSGVKITSSDIGYSSFIGSDMQMASLDKVTGYGATFSNAELTL 147

Query:   171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYA 225
               +    L +AN  +A     V+  SDL      GA+   A I  +  Q    YA
Sbjct:   148 VSITESTLRKANFQDAEASNVVIQNSDLTEVSFFGANLRSARIQQSLLQHSMMYA 202


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      282       234   0.00087  113 3  11 22  0.44    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.37u 0.18s 17.55t   Elapsed:  00:00:00
  Total cpu time:  17.37u 0.18s 17.55t   Elapsed:  00:00:00
  Start:  Fri May 10 03:04:03 2013   End:  Fri May 10 03:04:03 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1Q1	TL225_ARATH	No assigned EC number	0.7157	0.9822	0.9892	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	1e-13
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	9e-13
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	1e-12
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	2e-10
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	1e-07
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	2e-06
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	5e-06
COG1357	238	COG1357, COG1357, Pentapeptide repeats containing	1e-05
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	1e-05
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	3e-05
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	6e-05
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	6e-05
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	7e-05
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	7e-05
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	7e-05
PRK15197	291	PRK15197, PRK15197, secreted effector protein PipB	2e-04
PRK15196	350	PRK15196, PRK15196, secreted effector protein PipB	3e-04
pfam00805	40	pfam00805, Pentapeptide, Pentapeptide repeats (8 c	7e-04
pfam13599	77	pfam13599, Pentapeptide_4, Pentapeptide repeats (9	0.001
PRK15377	782	PRK15377, PRK15377, E3 ubiquitin-protein ligase So	0.002

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 36/106 (33%), Positives = 53/106 (50%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A    A+L  A     N   AN + AD+  +D SG+  +GA L  A    AN +GA+LS 
Sbjct: 128 ANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSG 187

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 216
             +    L+ A+L+ A L    L  ++LGGA + GA+   A +  A
Sbjct: 188 ADLRNANLSGADLSGADLTGANLVNANLGGANLFGANLLGADLSGA 233

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 66.1 bits (161), Expect = 9e-13
 Identities = 33/107 (30%), Positives = 52/107 (48%)

Query: 105 FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 164
               + A    ADL  A     N   AN + A++  ++ S +  +GA L  A    A+ +
Sbjct: 107 LSNATRANLSGADLSGANLSNANLTGANLSGANLNGANLSNANLSGADLSGADLSGADLS 166

Query: 165 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           GA+LS   +    L+ ANL+ A L    L+ +DL GA + GA+  +A
Sbjct: 167 GANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANLVNA 213

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 65.3 bits (159), Expect = 1e-12
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMR-ESDFSGSKFNGAYLEKAVAYKANFTGAD 167
             A     DL  A     +   AN   AD+   +D SG+   GA L  A    AN +GA+
Sbjct: 47  ENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGANLSGAN 106

Query: 168 LS---DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 216
           LS      +    L+ ANL+NA L    L+ ++L GA +  A+ S A +  A
Sbjct: 107 LSNATRANLSGADLSGANLSNANLTGANLSGANLNGANLSNANLSGADLSGA 158

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A+L  A     N   A+ + AD+  +D SG+  +GA L  A    AN +GADL
Sbjct: 136 SGANLNGANLSNA-----NLSGADLSGADLSGADLSGANLSGADLRGANLSGANLSGADL 190

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
            +  +    L+ A+LT A LV   L  ++L GA + GAD S A
Sbjct: 191 RNANLSGADLSGADLTGANLVNANLGGANLFGANLLGADLSGA 233

Length = 238

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 4/138 (2%)

Query: 91  LADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG 150
           LADL+   +  +G   + +          +      NF  AN +  D+  ++ SG+  + 
Sbjct: 9   LADLDLESSRLQGIRELKANLLGADLQGSELQLGDLNFENANLSGLDLSGANLSGADLSN 68

Query: 151 AYLEKA-VAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFS 209
           A L  A ++  A+ +GADL    +    L+ ANL+ A L  +  TR++L GA + GA+ S
Sbjct: 69  ANLRGADLSKGADLSGADLEGANLRGANLSGANLSGANL--SNATRANLSGADLSGANLS 126

Query: 210 DAVIDLAQ-KQALCKYAN 226
           +A +  A    A    AN
Sbjct: 127 NANLTGANLSGANLNGAN 144

Length = 238

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
           +FR  +F + D++  +FS +            +  NF+  DL D       L  A  +N 
Sbjct: 2   DFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSNC 61

Query: 187 VLVRTVLTRSDLGGAIIEGADF 208
            L     + S      ++  DF
Sbjct: 62  DLKNVNFSGS------LKDCDF 77

Length = 77

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 42.4 bits (101), Expect = 5e-06
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           N   AN   AD+R +D SG+   GA L       AN +GA+LS 
Sbjct: 2   NLSGANLRGADLRGADLSGADLTGANLS-----GANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 25/78 (32%), Positives = 36/78 (46%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A+L  A     N   AN + AD+R ++ SG+  +GA L  A    AN  GA+L
Sbjct: 161 SGADLSGANLSGADLRGANLSGANLSGADLRNANLSGADLSGADLTGANLVNANLGGANL 220

Query: 169 SDTLMDRMVLNEANLTNA 186
               +    L+ A L + 
Sbjct: 221 FGANLLGADLSGATLGDV 238

Length = 238

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 10/69 (14%), Positives = 24/69 (34%)

Query: 141 SDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGG 200
           +DF    F    L+      A     + S+  +  +  ++ +L +       L  +    
Sbjct: 1   ADFRNCSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSN 60

Query: 201 AIIEGADFS 209
             ++  +FS
Sbjct: 61  CDLKNVNFS 69

Length = 77

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 40.1 bits (95), Expect = 3e-05
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)

Query: 161 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 210
           AN +GA+L            A+L  A L    LT ++L GA + GA+ S 
Sbjct: 1   ANLSGANLR----------GADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 10/79 (12%)

Query: 136 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTR 195
           AD R   F                  NF+ A L +       L   N ++  L     T 
Sbjct: 1   ADFRNCSFENCDLKN----------VNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTE 50

Query: 196 SDLGGAIIEGADFSDAVID 214
           +DL  A     D  +    
Sbjct: 51  ADLKNAKFSNCDLKNVNFS 69

Length = 77

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 25/125 (20%)

Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGS----------KFNGAYLEKAVAYKANF 163
           G  +L+ AV    N    N   AD+  ++  G+           F GA L       +NF
Sbjct: 150 GGMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNF 209

Query: 164 TGADLSDTLMDRMVLNEANLTNAVLVRTVL---------------TRSDLGGAIIEGADF 208
             A L D++M    L+ ANLT A L    L                 ++L GA +  AD 
Sbjct: 210 KNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADM 269

Query: 209 SDAVI 213
           S A +
Sbjct: 270 SGATL 274

Length = 350

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 38.9 bits (92), Expect = 7e-05
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 178 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           L+ ANL  A L    L+ +DL GA + GA+ S A
Sbjct: 3   LSGANLRGADLRGADLSGADLTGANLSGANLSGA 36

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSG-----SKFNGAYLEKAVAYKANFTG 165
           + F +A L  ++        AN T A+++ +   G        +GA ++      A    
Sbjct: 207 SNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIR 266

Query: 166 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           AD+S   +    +  A +  AVL R  L ++      ++GAD ++A
Sbjct: 267 ADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEA 312

Length = 350

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 173
           G  +LR       N    +F   D+ + D S + F    L       AN   A+L    +
Sbjct: 152 GFLNLRGV-----NLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNL 206

Query: 174 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 210
               + +ANLT+A L    ++  +L  AI+ G+D +D
Sbjct: 207 MGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTD 243

Length = 291

>gnl|CDD|185119 PRK15197, PRK15197, secreted effector protein PipB; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 190
           A+F    +   +  G+    A L       +N T A+L+   +    ++  NLT A+L  
Sbjct: 179 ADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFG 238

Query: 191 TVLTRSDLGGAIIEGADFSDA 211
           + LT + L GA ++    + A
Sbjct: 239 SDLTDTKLNGAKLDKIALTLA 259

Length = 291

>gnl|CDD|185118 PRK15196, PRK15196, secreted effector protein PipB2; Provisional

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A L  A     NF+ AN +   + +S+F  +    + +  A    AN TGA+L
Sbjct: 175 SGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANL 234

Query: 169 SDTLMDRMVLNEANLTNAVLVRT-----VLTRSDLGGAIIEGADFSDAVIDLA 216
               +    + E N + A +  T      L R+D+ GA ++GA    A+++ A
Sbjct: 235 QHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGA 287

Length = 350

>gnl|CDD|109845 pfam00805, Pentapeptide, Pentapeptide repeats (8 copies)

 Score = 36.2 bits (85), Expect = 7e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG 150
           A    A+LR A     +   A+ T A++  ++ SG+  +G
Sbjct: 1   ANLSGANLRGADLRGADLSGADLTGANLSGANLSGANLSG 40

These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid. Length = 40

>gnl|CDD|205777 pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 12/61 (19%), Positives = 22/61 (36%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F + DL+         +  NF++  +   +FS          +A    A F+  DL +
Sbjct: 6   CSFENCDLKNVNFSNATLKNCNFSNCKLFNVNFSDCDLRDVDFTEADLKNAKFSNCDLKN 65

Query: 171 T 171
            
Sbjct: 66  V 66

Length = 77

>gnl|CDD|185275 PRK15377, PRK15377, E3 ubiquitin-protein ligase SopA; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 16/147 (10%)

Query: 83  SCSSNISALADLNKYEAETRGEFGIGSAAQFGSA--DLRKAVHVKENFRRANFTSA---- 136
           S  +  S  +  +  +  T       +  +   A  D   A     NF + N +      
Sbjct: 160 SLQATSSPSSPADWAKKLTDARLRQEAGEELTYADRDFSNADFRNINFSKINPSGFMLRD 219

Query: 137 --DMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLT 194
              ++  +FS SKF  + +      +  FT + LSD +      + +++  A L  ++ T
Sbjct: 220 GDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEASLKYSITT 279

Query: 195 R-------SDLGGAII-EGADFSDAVI 213
           +       + L   II   A+ S  ++
Sbjct: 280 QQQPSFIETTLKNTIIIHKANLSGVIL 306

Length = 782

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PRK15197	291	secreted effector protein PipB; Provisional	99.73
PRK15197	291	secreted effector protein PipB; Provisional	99.71
PRK15196	350	secreted effector protein PipB2; Provisional	99.65
PRK15196	350	secreted effector protein PipB2; Provisional	99.64
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.63
PRK15377	782	E3 ubiquitin-protein ligase SopA; Provisional	99.61
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.58
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	99.56
PRK09718	512	hypothetical protein; Validated	99.55
PRK09718	512	hypothetical protein; Validated	99.51

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.73  E-value=1e-18  Score=162.14  Aligned_cols=110  Identities=20%  Similarity=0.251  Sum_probs=67.5

Q ss_pred             CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCce
Q 023440          108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  187 (282)
Q Consensus       108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~  187 (282)
                      +.+++|.+++|++++|.+++|.+++|.+++|++|+|.+++|.+++|.+++|.+|+|.+++|.+++|.+++|.+++|.+|+
T Consensus       156 L~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~  235 (291)
T PRK15197        156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAI  235 (291)
T ss_pred             CCCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCCCE
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             ecCCeeccceecCcEEcCccccCc-eeCHHH
Q 023440          188 LVRTVLTRSDLGGAIIEGADFSDA-VIDLAQ  217 (282)
Q Consensus       188 l~~a~l~~a~l~~a~L~gAdf~~A-~l~~~~  217 (282)
                      |.+++|++++|.+++|++++|.++ .|.+.+
T Consensus       236 L~gAdLs~A~L~gAnL~~A~L~~a~~L~gad  266 (291)
T PRK15197        236 LFGSDLTDTKLNGAKLDKIALTLAKALTGAD  266 (291)
T ss_pred             eCCCCcCCCCCCCCCCCccccccCCCCCCCc
Confidence            666666655555555555555555 555443

>PRK15197 secreted effector protein PipB; Provisional

Probab=99.71  E-value=3.1e-18  Score=158.84  Aligned_cols=83  Identities=22%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             ceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceecC
Q 023440          111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR  190 (282)
Q Consensus       111 ~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~  190 (282)
                      .+|.+++|++++|.+++|.+++|.+++|++++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|++++|.+
T Consensus       154 ldL~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~g  233 (291)
T PRK15197        154 LNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTA  233 (291)
T ss_pred             ccCCCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCC
Confidence            33444444443333333333333333333333333333333333333333333333333333333333333333333333


Q ss_pred             Cee
Q 023440          191 TVL  193 (282)
Q Consensus       191 a~l  193 (282)
                      |+|
T Consensus       234 A~L  236 (291)
T PRK15197        234 AIL  236 (291)
T ss_pred             CEe
Confidence            333

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.65  E-value=4e-17  Score=155.51  Aligned_cols=13  Identities=23%  Similarity=0.243  Sum_probs=4.9

Q ss_pred             CCCceEccccccc
Q 023440          108 GSAAQFGSADLRK  120 (282)
Q Consensus       108 ls~~~f~~~dL~~  120 (282)
                      +.+++|++++|++
T Consensus       169 L~gadLs~a~L~~  181 (350)
T PRK15196        169 LCDADLSGANLEG  181 (350)
T ss_pred             CCCCCcCcCcccc
Confidence            3333333333333

>PRK15196 secreted effector protein PipB2; Provisional

Probab=99.64  E-value=4.5e-17  Score=155.16  Aligned_cols=21  Identities=33%  Similarity=0.446  Sum_probs=7.9

Q ss_pred             ceEccccccccccCCceeeCc
Q 023440          111 AQFGSADLRKAVHVKENFRRA  131 (282)
Q Consensus       111 ~~f~~~dL~~~~f~~adl~~a  131 (282)
                      ++|++++|.+++|.+++|+++
T Consensus       192 a~L~~AnLs~a~f~~a~L~~A  212 (350)
T PRK15196        192 ANFKGANLSGTSLGDSNFKNA  212 (350)
T ss_pred             CeecCcchhhhhhccCccccc
Confidence            333333333333333333333

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.63  E-value=1.3e-16  Score=161.83  Aligned_cols=105  Identities=14%  Similarity=0.242  Sum_probs=62.9

Q ss_pred             CCCceEccccccccccCCceeeCcEEccceecCce-ecCccccCceeccceeccceeccccccCcccceeeeccccccCc
Q 023440          108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESD-FSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA  186 (282)
Q Consensus       108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~-f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A  186 (282)
                      +++++|.++||++++|.+++|.+++|.+++|++++ |.+|+|.+++|.+|+|.+++|.+|+|++++|.+++|.+++|.+|
T Consensus       187 Le~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgA  266 (782)
T PRK15377        187 GEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNS  266 (782)
T ss_pred             CccCCcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCC
Confidence            45666777777777777777666666666666666 66666666666666666666666666555555555555555555


Q ss_pred             eecCCeeccc--eecCcEEcCccccCce
Q 023440          187 VLVRTVLTRS--DLGGAIIEGADFSDAV  212 (282)
Q Consensus       187 ~l~~a~l~~a--~l~~a~L~gAdf~~A~  212 (282)
                      +|.+++|.++  ++.++++.+++|+||+
T Consensus       267 dLkgADLSgS~lt~~~inLs~A~LkGA~  294 (782)
T PRK15377        267 DMNEASLKYSITTQQQPSFIETTLKNTI  294 (782)
T ss_pred             CCCCCCCCCCcccccccccchhhcCCcE
Confidence            5555555555  2233444444444443

>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional

Probab=99.61  E-value=3.6e-16  Score=158.60  Aligned_cols=108  Identities=22%  Similarity=0.296  Sum_probs=70.9

Q ss_pred             CCCceEccccccccccCCceeeCcEEccce-ecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCc
Q 023440          108 GSAAQFGSADLRKAVHVKENFRRANFTSAD-MRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA  186 (282)
Q Consensus       108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~-l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A  186 (282)
                      .++++|.+++|++++|.+++|.+++|.+++ |++|+|.+|+|.+++|.+++|.+|+|++++|+++.|.+++|.+|+|+++
T Consensus       192 Fsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgAdLkgA  271 (782)
T PRK15377        192 YADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEA  271 (782)
T ss_pred             cCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCCCCCCC
Confidence            566777777777777777777777777777 7777777777777777777777777777777777777777776666666


Q ss_pred             eecCC-------eeccceecCcE-EcCccccCceeCH
Q 023440          187 VLVRT-------VLTRSDLGGAI-IEGADFSDAVIDL  215 (282)
Q Consensus       187 ~l~~a-------~l~~a~l~~a~-L~gAdf~~A~l~~  215 (282)
                      +|.++       ++.+++|+||+ +.+|+|.|+++++
T Consensus       272 DLSgS~lt~~~inLs~A~LkGA~I~~gAnLlGAiL~d  308 (782)
T PRK15377        272 SLKYSITTQQQPSFIETTLKNTIIIHKANLSGVILNE  308 (782)
T ss_pred             CCCCCcccccccccchhhcCCcEeccCCccccceeec
Confidence            66666       23334444444 2444555555443

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.58  E-value=2.4e-16  Score=139.88  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=11.8

Q ss_pred             eecCCeeccceecCcEEcCccccCceeCHHH
Q 023440          187 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ  217 (282)
Q Consensus       187 ~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~  217 (282)
                      +|+++.+.+++|++|+|.|+|+++++|.+.+
T Consensus       242 ~Lknanle~~NLrgA~LaGadLencnlsG~d  272 (302)
T KOG1665|consen  242 TLKNANLENCNLRGANLAGADLENCNLSGAD  272 (302)
T ss_pred             cccccccccCccccccccCCccccCCCCCcc
Confidence            3333333333333333333333333443333

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=99.56  E-value=5.9e-16  Score=137.42  Aligned_cols=9  Identities=33%  Similarity=0.538  Sum_probs=3.3

Q ss_pred             ceEcccccc
Q 023440          111 AQFGSADLR  119 (282)
Q Consensus       111 ~~f~~~dL~  119 (282)
                      ++|+|+||+
T Consensus       136 vNlSGaDLs  144 (302)
T KOG1665|consen  136 VNLSGADLS  144 (302)
T ss_pred             ccccccchh
Confidence            333333333

>PRK09718 hypothetical protein; Validated

Probab=99.55  E-value=3.6e-15  Score=145.06  Aligned_cols=106  Identities=15%  Similarity=0.301  Sum_probs=49.3

Q ss_pred             CCCceEccccccccccCCceeeCcEEccceecCceecCccccC-----ceeccceeccceeccccccCcccceeeecccc
Q 023440          108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNG-----AYLEKAVAYKANFTGADLSDTLMDRMVLNEAN  182 (282)
Q Consensus       108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~-----a~f~~a~l~~a~l~gAdls~a~l~~a~f~~ad  182 (282)
                      +.+|+|++|+|++++|.+++|.++.|.++.|.+|+|.+|+|.+     +.|.++.|.+|++.|++|+++.+.++.|.+|+
T Consensus        97 FegCdFsgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAdLsgA~FarA~L~rvsFinCKLsGAdFSgA~Lk~V~FsdCn  176 (512)
T PRK09718         97 LTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFKCRRLHNVIFIKASGEYVDFSKNILDTVDFSQSQ  176 (512)
T ss_pred             EcccEecCCEEeeceecCCEEEeEEEeccccCccccccCCCCCCccccceecceEEEeccccCcccccCccCCcEEeeeE
Confidence            3455555555555555555555555555555555554544444     33334444444444444444444444444444


Q ss_pred             ccCceecCCeeccceecCcEEcCccccCcee
Q 023440          183 LTNAVLVRTVLTRSDLGGAIIEGADFSDAVI  213 (282)
Q Consensus       183 L~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l  213 (282)
                      |.+++|.+++|++++|.+++|.+++|.+++|
T Consensus       177 L~yAnFsgAnLskA~F~gCDLseAdFSEcdL  207 (512)
T PRK09718        177 LTHSNFRECQIRNSNFDNCYLYASHFTRAEF  207 (512)
T ss_pred             ecccCCCCCcCCCCEEeCccCCcCCccCCcc
Confidence            4444444444444444444444333333333

>PRK09718 hypothetical protein; Validated

Probab=99.51  E-value=6.2e-15  Score=143.40  Aligned_cols=8  Identities=0%  Similarity=0.181  Sum_probs=2.8

Q ss_pred             cccccCcc
Q 023440          165 GADLSDTL  172 (282)
Q Consensus       165 gAdls~a~  172 (282)
                      +++|.+++
T Consensus       179 yAnFsgAn  186 (512)
T PRK09718        179 HSNFRECQ  186 (512)
T ss_pred             ccCCCCCc
Confidence            33333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
2g0y_A	184	Crystal Structure Of A Lumenal Pentapeptide Repeat		4e-18
2f3l_A	184	Crystal Structure Of A Lumenal Rfr-Domain Protein (		9e-18
3n90_A	152	The 1.7 Angstrom Resolution Crystal Structure Of At		7e-10
2j8k_A	201	Structure Of The Fusion Of Np275 And Np276, Pentape		2e-06
3du1_X	257	The 2.0 Angstrom Resolution Crystal Structure Of He		2e-05
2j8i_A	118	Structure Of Np275, A Pentapeptide Repeat Protein F		9e-05
2o6w_A	150	Crystal Structure Of A Pentapeptide Repeat Protein		7e-04

>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein From Cyanothece Sp 51142 At 2.3 Angstrom Resolution. Tetragonal Crystal Form Length = 184

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 75/135 (55%)
Query: 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
           GS+A +    L       ++   A FT+AD+ +S+FS +   GA    +    A+  GAD
Sbjct: 49  GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 168 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANG 227
           L++ L        A+LTNAVL   ++ R+    A I GADFS AV+D+ +   LC  A+G
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADG 168
Query: 228 TNPITGVSTRKSLGC 242
            NP TGVSTR+SL C
Sbjct: 169 VNPKTGVSTRESLRC 183

>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein (Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1 Angstrom Resolution Length = 184

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 74/135 (54%)
Query: 108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
           GS+A +    L       ++   A FT+AD+ +S+FS +   GA    +    A+  GAD
Sbjct: 49  GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 168 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANG 227
           L++ L        A+LTNAVL   +  R+    A I GADFS AV+D+ +   LC  A+G
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIXXRTKFDDAKITGADFSLAVLDVYEVDKLCDRADG 168
Query: 228 TNPITGVSTRKSLGC 242
            NP TGVSTR+SL C
Sbjct: 169 VNPKTGVSTRESLRC 183

>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of At2g44920, A Pentapeptide Repeat Protein From Arabidopsis Thaliana Thylakoid Lumen Length = 152

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 126 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--E 180
           +   R +F ++ +R+++F G+K  GA       + A+ TGADLS+  +   D  + N  +
Sbjct: 26  QTLIRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTK 80
Query: 181 ANLTNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKS 239
            NLTNA L   T++  +   G+ I GADF+D  +   Q+  LCK A+G N  TG +TR +
Sbjct: 81  VNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDT 140
Query: 240 LGC 242
           L C
Sbjct: 141 LLC 143

>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide Repeat Proteins From Nostoc Punctiforme Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 36/147 (24%)
Query: 113 FGSADLRKAVHVKENFR----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 162
           F   DLR AV    N             AN   A++  +D SG+  NGA L  A     N
Sbjct: 37  FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGA-----N 91
Query: 163 FTGADLSD----------TLMDRMVLNEANLTNAVLVRTVLTR-----SDLGGAIIEGAD 207
            + ADLSD           ++D  VLN+ANL  A L + +L+      +DL  A +E AD
Sbjct: 92  LSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAAD 151
Query: 208 FSD---AVIDLAQ---KQALCKYANGT 228
            S    A+ DL Q    QA  + AN T
Sbjct: 152 LSGADLAIADLHQANLHQAALERANLT 178

>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A Pentapeptide Repeat Protein Involved In Heterocyst Differentiation Regulation From The Cyanobacterium Nostoc Sp. Strain Pcc 7120 Length = 257

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175
           ADL +A+    +   A+   A +RE+D +G+K     LE+A   KA+  GA+L+   + R
Sbjct: 80  ADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSR 139
Query: 176 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
            +L +A+L  +   RT     DLG  ++ GAD S A
Sbjct: 140 CLLFQADLRPSSNQRT-----DLGYVLLTGADLSYA 170

>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From Nostoc Punctiforme Length = 118

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 140 ESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLG 199
           E DFS     GA LE       N +GA L   ++D   L +ANL+ A L    L  +DL 
Sbjct: 34  ERDFSIVDLRGAVLENI-----NLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR 88
Query: 200 GAIIEGADFSDAVID 214
           GA +  AD SDA++D
Sbjct: 89  GANLSKADLSDAILD 103

>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23) From The Cyanobacterium Cyanothece 51142 Length = 150

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 128 FRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 187
             RAN ++A++ +SD S        LE A+  + N +  DL + ++    L  ANL NA 
Sbjct: 58  LTRANLSNANLYQSDLSS-----IILENAILVETNLSETDLENAILIGANLQGANLENAN 112
Query: 188 LVRTVLTRSDLGGAIIEGADFSD 210
           L    L  ++L GAI+ G +  +
Sbjct: 113 LQGANLENANLRGAILTGVNLEE 135

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	7e-42
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	6e-09
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	5e-41
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	4e-20
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	5e-19
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	2e-18
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	9e-18
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	3e-17
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	3e-16
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-14
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-13
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	1e-06
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-19
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-18
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	1e-18
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	2e-18
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-18
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	4e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	8e-17
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	2e-16
3du1_X	257	ALL3740 protein, HETL; right-handed beta helix, re	5e-13
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	1e-19
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	2e-19
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-19
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-19
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	7e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	9e-17
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	3e-13
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	4e-12
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-19
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	2e-18
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	4e-18
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	8e-18
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-17
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	1e-12
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	9e-06
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	6e-05
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	9e-18
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	8e-17
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	9e-15
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	2e-14
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	3e-14
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-17
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	1e-16
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	8e-16
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	9e-16
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	2e-09
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-17
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	2e-14
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	5e-13
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	7e-13
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	4e-09
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	4e-17
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-15
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	6e-15
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	1e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	2e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	3e-13
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	6e-11
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	4e-09
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	3e-14
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	2e-09
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	9e-07
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	3e-05
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	3e-14
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	5e-14
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	4e-13
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	6e-12
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-11
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	3e-11
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	6e-10
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	2e-09

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score =  141 bits (358), Expect = 7e-42
 Identities = 55/151 (36%), Positives = 79/151 (52%)

Query: 92  ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA 151
            DL   + +       GS+A +    L       ++   A FT+AD+ +S+FS +   GA
Sbjct: 33  PDLGTDDDDKAMAMVTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGA 92

Query: 152 YLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
               +    A+  GADL++ L        A+LTNAVL   ++ R+    A I GADFS A
Sbjct: 93  VFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLA 152

Query: 212 VIDLAQKQALCKYANGTNPITGVSTRKSLGC 242
           V+D+ +   LC  A+G NP TGVSTR+SL C
Sbjct: 153 VLDVYEVDKLCDRADGVNPKTGVSTRESLRC 183

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A Length = 184

 Score = 53.3 bits (129), Expect = 6e-09
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 130 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 189
             + +    R    SG K   A  E+      +    DL     D+  +     ++A   
Sbjct: 5   HHHSSGLVPR---GSGMKETAAKFERQ-----HMDSPDLGTDDDDK-AMAMVTGSSASYE 55

Query: 190 RTVLTRSDLGGAIIEGADFSDA 211
              L   D  G  +  A F++A
Sbjct: 56  DVKLIGEDFSGKSLTYAQFTNA 77

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} Length = 152

 Score =  137 bits (349), Expect = 5e-41
 Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 1/143 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   DL       +   R +F ++ +R+++F G+K  GA    A    A+ + ADL
Sbjct: 9   GQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADL 68

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVL-TRSDLGGAIIEGADFSDAVIDLAQKQALCKYANG 227
                    + + NLTNA L    +   +   G+ I GADF+D  +   Q+  LCK A+G
Sbjct: 69  RGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADG 128

Query: 228 TNPITGVSTRKSLGCGNSRRNAY 250
            N  TG +TR +L C     + +
Sbjct: 129 VNATTGNATRDTLLCNLEHHHHH 151

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 84.4 bits (210), Expect = 4e-20
 Identities = 24/101 (23%), Positives = 36/101 (35%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F   +L ++ H    FR   F    +  S F+     G+               D + 
Sbjct: 35  CDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTL 94

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
            ++    L   NLT   L  T L  +DL   ++ GAD S A
Sbjct: 95  AVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGA 135

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 81.4 bits (202), Expect = 5e-19
 Identities = 20/109 (18%), Positives = 35/109 (32%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             + F    +  +V V    R       D   +   G+   G  L      + +    DL
Sbjct: 63  WHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDL 122

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
              ++    L+ A  T A L    L  + +   +   A    A +D+ Q
Sbjct: 123 RKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQ 171

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 79.8 bits (198), Expect = 2e-18
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + +Q   +  R        F R     +   +    GS F    L        +FT A L
Sbjct: 43  AESQHRGSAFRNC-----TFERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVL 97

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
               +  + L    L    LV T L +  L GA + GA  + A
Sbjct: 98  GGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGA 140

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 77.9 bits (193), Expect = 9e-18
 Identities = 20/103 (19%), Positives = 37/103 (35%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           +   F   DL +    +  F   +F+  ++ ES   GS F     E+   + + F    +
Sbjct: 13  TGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSM 72

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
             ++     L    L +      VL  +DL G  + G    + 
Sbjct: 73  LGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRET 115

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 76.7 bits (190), Expect = 3e-17
 Identities = 17/104 (16%), Positives = 26/104 (25%), Gaps = 5/104 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F   D         N   +    +  R   F  +    +   +     + F    L
Sbjct: 28  ERAMFSECDFSGV-----NLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSVFVACRL 82

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 212
               +D +    A L    L    LT   L    +   D    V
Sbjct: 83  RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCV 126

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 74.0 bits (183), Expect = 3e-16
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 5/96 (5%)

Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175
                       F   +F   D+       + F+          ++   G+   +   +R
Sbjct: 5   QQWVDC-----EFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFER 59

Query: 176 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
             L  +      ++ +V     L    ++  DF+ A
Sbjct: 60  TTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLA 95

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 1/104 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   D   AV    + R  N T   +RE+    +      L  A    A  TGA L
Sbjct: 83  RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARL 142

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSD-LGGAIIEGADFSDA 211
            D  +    ++      A LV   +     +  A   G   +  
Sbjct: 143 DDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG 186

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 66.7 bits (164), Expect = 1e-13
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 129 RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 188
               +   +    DF     +  + E+A+  + +F+G +L+++         +   N   
Sbjct: 3   HMQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAES-----QHRGSAFRNCTF 57

Query: 189 VRTVLTRSDLGGAIIEGADFSDA 211
            RT L  S      + G+ F   
Sbjct: 58  ERTTLWHSTFAQCSMLGSVFVAC 80

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A Length = 186

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 5/54 (9%), Positives = 18/54 (33%)

Query: 158 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           ++   +   + +        L+  +   A+      +  +L  +   G+ F + 
Sbjct: 2   SHMQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNC 55

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 84.9 bits (211), Expect = 1e-19
 Identities = 33/103 (32%), Positives = 51/103 (49%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S      ADL +A+    +   A+   A +RE+D +G+K     LE+A   KA+  GA+L
Sbjct: 73  SHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANL 132

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           +   + R +L +A+L  +   RT L    L GA +  AD   A
Sbjct: 133 NSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAA 175

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 82.2 bits (204), Expect = 1e-18
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    ADL  A        +     A++ ++   G+  N A L + + ++A+   +  
Sbjct: 98  YRAILREADLTGA-----KLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSSN 152

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 212
             T +  ++L  A+L+ A L    L  ++L GA +  A+F   +
Sbjct: 153 QRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTI 196

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 82.2 bits (204), Expect = 1e-18
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              + G ++           R A+ + A +   D S +    A L +A    A      L
Sbjct: 63  RQTRLGKSNFSHT-----CLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRL 117

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
            +  + +  L  ANL +A L R +L ++DL  +  +  D    
Sbjct: 118 EEANLIKASLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYV 160

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 81.4 bits (202), Expect = 2e-18
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 86  SNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSG 145
           S+++    L  Y A             F   +L++      +   A+ + AD+R++    
Sbjct: 19  SHMNVGEILRHYAA---------GKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGK 69

Query: 146 SKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 205
           S F+   L +A   +A   G DLS+  + R +L EA+LT A LV+T L  ++L  A + G
Sbjct: 70  SNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCG 129

Query: 206 ADFSDA 211
           A+ + A
Sbjct: 130 ANLNSA 135

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 80.2 bits (199), Expect = 5e-18
 Identities = 25/103 (24%), Positives = 38/103 (36%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                  ADL +A+  + +   A      + E++   +   GA L  A   +     ADL
Sbjct: 88  WGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADL 147

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
             +   R  L    LT A L    L  + L  A ++GA    A
Sbjct: 148 RPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRA 190

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 77.9 bits (193), Expect = 4e-17
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              +  +A L  A     +   A+     + +S+FS +    A L +A+ +  + + ADL
Sbjct: 43  QEIELTNASLTGA-----DLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADL 97

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 216
              ++    L  A L    L    L ++ L GA +  A+ S  ++  A
Sbjct: 98  YRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQA 145

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 77.5 bits (192), Expect = 5e-17
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S      ADLR +     + +R +     +  +D S +    A L  A    A    A+ 
Sbjct: 138 SRCLLFQADLRPS-----SNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANF 192

Query: 169 SDTLMDRMV---LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
             T+    +   L+ A+L  A L    L  + L  A ++GAD + A++  A+
Sbjct: 193 GRTIQWGNLAADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAE 244

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 77.2 bits (191), Expect = 8e-17
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 8/110 (7%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAY--------K 160
             +     DL   +    +   A+  +A +  ++  G+K   A   + + +         
Sbjct: 148 RPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSG 207

Query: 161 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 210
           A+  GADLS   ++  +L +ANL  A L   +L  ++L GAI+      D
Sbjct: 208 ASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIMPDGSIHD 257

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 76.0 bits (188), Expect = 2e-16
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              +   A+L KA     +   AN  SA++       +    +  ++        TGADL
Sbjct: 113 VKTRLEEANLIKA-----SLCGANLNSANLSRCLLFQADLRPSSNQRTDLGYVLLTGADL 167

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRS--------DLGGAIIEGADFSDA 211
           S   +    L+ ANL  A L R    R+        DL GA ++GAD S A
Sbjct: 168 SYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGADLSYA 218

>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP} Length = 257

 Score = 66.4 bits (163), Expect = 5e-13
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
           +    + +    R S  +     G  L    A K NF   +L +  +    L  A+L+ A
Sbjct: 5   HHHHHHSSGLVPRGSHMNV----GEILRHYAAGKRNFQHINLQEIELTNASLTGADLSYA 60

Query: 187 VLVRTVLTRSDLGGAIIEGADFSDA 211
            L +T L +S+     +  AD S+A
Sbjct: 61  DLRQTRLGKSNFSHTCLREADLSEA 85

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 84.0 bits (209), Expect = 1e-19
 Identities = 22/103 (21%), Positives = 37/103 (35%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               F  A L+ A+    +   A+F ++     +    +  GA    A       T    
Sbjct: 55  KGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWF 114

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
               +    L+ AN +  VL +  L  +   GA + GA FS +
Sbjct: 115 CSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGS 157

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 82.9 bits (206), Expect = 2e-19
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           +   F SA +        N   ANF+   + + +   +++ GA +  A    ++ +G + 
Sbjct: 110 TRTWFCSAYITNT-----NLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEF 164

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 215
           S    +       +LTN+ L    +   DL G  ++    S  +  L
Sbjct: 165 STFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERL 211

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 82.5 bits (205), Expect = 3e-19
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A F ++            R      AD R + F        +   A     N + A+ 
Sbjct: 75  SMADFRNSSALGI-----EIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSYANF 129

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           S  ++++  L E     A ++    + SDL G      D+  A
Sbjct: 130 SKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAA 172

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 82.5 bits (205), Expect = 4e-19
 Identities = 24/109 (22%), Positives = 38/109 (34%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F  A     +  +  F  A  T+ ++  ++FS        L +     A   GA  
Sbjct: 95  QGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATF 154

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
           S + +     +  +   A      LT S+LG   I G D     +D  Q
Sbjct: 155 SGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQ 203

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 76.3 bits (189), Expect = 7e-17
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 109 SAAQFGSADLRKAV-HVKENFRRANFTSADMR-----ESDFSGSKFNGAYLEKAVAYKAN 162
           S A     +      + +E+ +  NF+ A ++       D S + F  +           
Sbjct: 34  SGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCR 93

Query: 163 FTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
             GAD        M+       +A +  T L+ ++    ++E  +  + 
Sbjct: 94  AQGADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWEN 142

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 76.0 bits (188), Expect = 9e-17
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYL-EKAVAYKANFTGADLSDTLMD 174
             + +     E    + F + D   +D SG++F G    ++      NF+ A L D +  
Sbjct: 11  EKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFK 70

Query: 175 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 216
              L+ A+  N+  +   +      GA   GA F + +    
Sbjct: 71  SCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRT 112

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 66.3 bits (163), Expect = 3e-13
 Identities = 13/90 (14%), Positives = 21/90 (23%), Gaps = 1/90 (1%)

Query: 123 HVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD-TLMDRMVLNEA 181
           H+                     S F       A      F G    D         + A
Sbjct: 3   HMALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRA 62

Query: 182 NLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
            L +A+     L+ +D   +   G +    
Sbjct: 63  MLKDAIFKSCDLSMADFRNSSALGIEIRHC 92

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A Length = 217

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 1/86 (1%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD-TLMDRMVLNEANLTN 185
           +          +  + F+G K   +         A+ +G +       DR      N + 
Sbjct: 2   SHMALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSR 61

Query: 186 AVLVRTVLTRSDLGGAIIEGADFSDA 211
           A+L   +    DL  A    +     
Sbjct: 62  AMLKDAIFKSCDLSMADFRNSSALGI 87

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 81.4 bits (202), Expect = 9e-19
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    ADL  A         A    A + E+  + +    A LE+A+   AN   ADL
Sbjct: 88  RGANLSKADLSDA-----ILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADL 142

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           S+  ++   L+ A+L  A L +  L ++ L  A + GA+  DA
Sbjct: 143 SEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDA 185

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 80.6 bits (200), Expect = 2e-18
 Identities = 29/103 (28%), Positives = 52/103 (50%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A   +A L  A+  +    +AN  +A++ ++  S +    A L +A    A+ +GADL
Sbjct: 98  SDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGADL 157

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           +   + +  L++A L  A L    L  ++L G I+EG + + A
Sbjct: 158 AIADLHQANLHQAALERANLTGANLEDANLEGTILEGGNNNLA 200

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 79.4 bits (197), Expect = 4e-18
 Identities = 32/103 (31%), Positives = 50/103 (48%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A L +A   + N  RA+ + A +  +D  G+  + A L  A+   A   GA L
Sbjct: 53  SGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAIL 112

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
            + ++++  L  ANL  A+L    +  +DL  A +E AD S A
Sbjct: 113 DEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSGA 155

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 78.7 bits (195), Expect = 8e-18
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 5/103 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    A L  A     + R AN + AD+ ++    +   GA L++AV  +AN   A+L
Sbjct: 73  SRADLSGATLNGA-----DLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANL 127

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
              ++    + EA+L+ A L    L+ +DL  A +  A+   A
Sbjct: 128 EQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQA 170

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 75.6 bits (187), Expect = 9e-17
 Identities = 31/101 (30%), Positives = 46/101 (45%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F   DLR AV    N   A    A + E++   +  + A L  A    A+  GA+LS 
Sbjct: 35  RDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSK 94

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
             +   +L+ A L  A+L   VL +++L  A +E A  S A
Sbjct: 95  ADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHA 135

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
           +    + +    R S     K    Y     A + +F+  DL   +++ + L+ A L  A
Sbjct: 5   HHHHHHSSGLVPRGSHMDVEKLRQLYA----AGERDFSIVDLRGAVLENINLSGAILHGA 60

Query: 187 VLVRTVLTRSDLGGAIIEGADFSDA 211
           +L    L +++L  A + GA  + A
Sbjct: 61  MLDEANLQQANLSRADLSGATLNGA 85

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 44.4 bits (106), Expect = 9e-06
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 144 SGSKFNGAYLEKAVAYKANFTGADLSDT-LMDRMVLNEANLTNAVLVRTVLTRSDLGGAI 202
             S  +  +    V   ++     L           +  +L  AVL    L+ + L GA+
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGAM 61

Query: 203 IEGADFSDA 211
           ++ A+   A
Sbjct: 62  LDEANLQQA 70

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A Length = 201

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 153 LEKAVAYKANFTGADLSDTLMDRMVL------NEANLTNAVLVRTVLTRSDLGGAIIEGA 206
           +  +  +  + +G     + MD   L       E + +   L   VL   +L GAI+ GA
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMDVEKLRQLYAAGERDFSIVDLRGAVLENINLSGAILHGA 60

Query: 207 DFSDA 211
              +A
Sbjct: 61  MLDEA 65

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 77.1 bits (191), Expect = 9e-18
 Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               FG    +       +  RAN ++A++ +SD S      A L +    + +   A L
Sbjct: 44  VTTPFGMDKAKPV-----DLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAIL 98

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
               +    L  ANL  A L    L  + L G  +E       
Sbjct: 99  IGANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKGI 141

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 74.8 bits (185), Expect = 8e-17
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              +    DL +A     N   AN   +D+       +      L +     A   GA+L
Sbjct: 49  GMDKAKPVDLTRA-----NLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANL 103

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
               ++   L  ANL NA L   +LT  +L    ++G +    
Sbjct: 104 QGANLENANLQGANLENANLRGAILTGVNLEETHLKGIETDKN 146

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 69.0 bits (170), Expect = 9e-15
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
                   +      +      +   +               A L  A  Y+++ +   L
Sbjct: 21  EGVNLPRENFGLKYRI--PRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIIL 78

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
            + ++    L+E +L NA+L+   L  ++L  A ++GA+  +A
Sbjct: 79  ENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENA 121

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 115 SADLRKAVHVKENFRRANFTSADMRESDF--------SGSKFNGAYLEKAVAYKANFTGA 166
           + +L +   ++      N    ++   +F        S S           A   + T A
Sbjct: 3   TNNLYRL-ELERECVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRA 61

Query: 167 DLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
           +LS+  + +  L+   L NA+LV T L+ +DL  AI+ GA+   A
Sbjct: 62  NLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGA 106

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece} Length = 150

 Score = 67.4 bits (166), Expect = 3e-14
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           + A   +A+L ++     +       +A + E++ S +    A L  A    AN   A+L
Sbjct: 59  TRANLSNANLYQS-----DLSSIILENAILVETNLSETDLENAILIGANLQGANLENANL 113

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 210
                    L  ANL  A+L    L  + L G   +     D
Sbjct: 114 QGA-----NLENANLRGAILTGVNLEETHLKGIETDKNTVWD 150

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 77.9 bits (193), Expect = 1e-17
 Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 1/110 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFRRA-NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167
              +    +   A         A +F    + +S F G    G  + +   + ANFT AD
Sbjct: 77  VDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEAD 136

Query: 168 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
             D    +  L  +   N  L       +      I   D   A   L +
Sbjct: 137 CEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPE 186

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 14/91 (15%), Positives = 28/91 (30%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
                ++        D SG        E     + NFT A+L+          + NL+  
Sbjct: 5   TLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLI 64

Query: 187 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
            + +T           + G +++ A     +
Sbjct: 65  SIPQTSFMEVRFVDCKMLGVNWTSAQWPSVK 95

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 73.3 bits (181), Expect = 8e-16
 Identities = 11/97 (11%), Positives = 27/97 (27%)

Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 175
             L    +  E+F   + +   +    F    F      +A   +  F   +  D  +  
Sbjct: 4   KTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSL 63

Query: 176 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 212
           + + + +      V   +   +   A         A+
Sbjct: 64  ISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGAL 100

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 72.9 bits (180), Expect = 9e-16
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
            A    S D      V E+    +  S    +  F    F  A L +    +  F   +L
Sbjct: 2   PAKTLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNL 61

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGA-DFSDAVIDLA 216
           S   + +    E    +  ++    T +      +EGA  F   +++ +
Sbjct: 62  SLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDS 110

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A Length = 200

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 20/92 (21%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           +  +     +  A     NF  A+   AD  +SD  GS F+   L       A+F  A  
Sbjct: 118 AGVKMVECRIHDA-----NFTEADCEDADFTQSDLKGSTFHNTKLT-----GASFIDAVN 167

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGG 200
                        ++ +  + R   +  +   
Sbjct: 168 YH----------IDIFHNDIKRARFSLPEAAS 189

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 81.1 bits (200), Expect = 2e-17
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 13/139 (9%)

Query: 92  ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA 151
           A L+K  AE   +    SA + G     +      N+   + +   +   + S   F+GA
Sbjct: 5   ACLSK--AELTADLIWLSANRTGEESAEEL-----NYSGCDLSGLSLVGLNLSSVNFSGA 57

Query: 152 YLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL----VRTVLTRSDLGGAIIEGAD 207
            L+      ++ + A L +      +LNE N   A L    +R +   S+   + ++ A 
Sbjct: 58  VLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNAS 117

Query: 208 FSDAVIDLAQKQALCKYAN 226
           F  +     Q   +   A+
Sbjct: 118 FKGS--SYIQYPPILNEAD 134

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 72.3 bits (177), Expect = 2e-14
 Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 113 FGSADLRKA--VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
            G A L KA                    E ++SG   +G  L        NF+GA L D
Sbjct: 2   QGRACLSKAELTADLIWLSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDD 61

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 213
           T      L  ++L+ AVL       S L       A+ S+ +I
Sbjct: 62  T-----DLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCII 99

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 67.7 bits (165), Expect = 5e-13
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
           +  RA  + A++          +     +  A + N++G DLS   +  + L+  N + A
Sbjct: 1   SQGRACLSKAELTADLIW---LSANRTGEESAEELNYSGCDLSGLSLVGLNLSSVNFSGA 57

Query: 187 VLVRTVLTRSDLGGAIIEGADFSDA 211
           VL  T L  SDL  A++E   F ++
Sbjct: 58  VLDDTDLRMSDLSQAVLENCSFKNS 82

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 67.3 bits (164), Expect = 7e-13
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSK-------FNGAYLEKAV-AYK 160
           +   F  A+L   + ++  F  +NF++++++ + F GS         N A L  A+    
Sbjct: 85  NECNFCYANLSNCI-IRALFENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPG 143

Query: 161 ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGAD 207
              +GA L D       L         L    +  SD+   I+   D
Sbjct: 144 MVLSGAILGDVKE----LFSEKSNTINLGGCYIDLSDIQENILSVLD 186

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A Length = 613

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 13/129 (10%), Positives = 38/129 (29%), Gaps = 5/129 (3%)

Query: 107 IGSAAQFGSADLRKAVHVKE-NFRRANFTSA-DMRESDFSGSKFNGAYLEKAVAYKANFT 164
           I        ADL  A+ +       A      ++     +     G Y++ +   +   +
Sbjct: 124 IQYPPILNEADLTGAIIIPGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQENILS 183

Query: 165 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV--IDLAQKQALC 222
             D      ++ +L   N ++       +  ++     I   + +     + ++   +  
Sbjct: 184 VLDNYTKS-NKSILLTMNTSDDKYNHDKVRAAEELIKKISLDELAAFRPYVKMSLADSFS 242

Query: 223 KYANGTNPI 231
            +    N  
Sbjct: 243 IHPYLNNAN 251

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 4/109 (3%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
              +F   DL         F   NF+  D+ E  F    F     E++        G DL
Sbjct: 8   EGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQS----CLLQGCDL 63

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
            +    R  L  A+ + +  +   L      G     A F++ +   + 
Sbjct: 64  REASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSY 112

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 1/86 (1%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD-TLMDRMVLNEANLTN 185
            F    F   D+    F G +F G         +  F      D       +L   +L  
Sbjct: 6   CFEGVRFEQQDLEGEQFQGCRFIGCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLRE 65

Query: 186 AVLVRTVLTRSDLGGAIIEGADFSDA 211
           A  +R  LT +D   +   G +  D 
Sbjct: 66  ASFLRCDLTMADCSRSQCLGLELRDC 91

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 71.0 bits (174), Expect = 6e-15
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
                S  L+       + R A+F   D+  +D S S+  G  L    A   NF+ A  +
Sbjct: 50  RESEQSCLLQGC-----DLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFA 104

Query: 170 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
           + +       EA+LT             L    + G  +  A +  A 
Sbjct: 105 NQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGAS 152

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 67.5 bits (165), Expect = 1e-13
 Identities = 15/109 (13%), Positives = 40/109 (36%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
            +      DLR+A  ++ +   A+ + +     +    +  G    +A         +  
Sbjct: 54  QSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYF 113

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
            +  +     + AN    +L +  L+ +   GA + GA  + + +  ++
Sbjct: 114 CEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSE 162

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 24/116 (20%), Positives = 41/116 (35%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F  A     + V   F  A+ T  +   ++F G       L       AN  GA L+ 
Sbjct: 96  INFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAG 155

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYAN 226
           + +      + +  +  L    L + DL G  +   +     I+  Q+QAL +   
Sbjct: 156 SDLSGSEFGQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLEQIG 211

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 1/108 (0%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTS-ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
             F   DL +   V  +F          ++  D   + F    L  A   ++   G +L 
Sbjct: 30  CNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCDLTMADCSRSQCLGLELR 89

Query: 170 DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
           D     +  + A+  N + V +    + L G     A+F   +++  +
Sbjct: 90  DCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCE 137

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 19/109 (17%), Positives = 35/109 (32%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A F   DL  A   +                +FS + F       +   +A+ TG + 
Sbjct: 64  REASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNF 123

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
           S    +  +L +  L+        L  + L G+ + G++F         
Sbjct: 124 SYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVN 172

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 59.8 bits (145), Expect = 6e-11
 Identities = 24/109 (22%), Positives = 34/109 (31%), Gaps = 5/109 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S +Q    +LR            NF+ A         S F  A+L       ANF G  L
Sbjct: 79  SRSQCLGLELRDC-----QALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLL 133

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
               +       ANL  A L  + L+ S+ G       +     +    
Sbjct: 134 EQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGCDLRQCD 182

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A Length = 216

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 1/103 (0%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           +      +   +A     NF  ANF    + + + SG+++ GA L  A    ++ +G++ 
Sbjct: 104 ANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEF 163

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
                  + L   +L    L    L R +L G  I   D   A
Sbjct: 164 GQIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQIN-EDQQQA 205

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 71.7 bits (175), Expect = 3e-14
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFS------GSKFNGAYLEKAVAYKANF 163
           A +   A LR+           +F++AD R   FS        + +G  ++      + F
Sbjct: 19  AKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKF 78

Query: 164 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 216
           T +D+S    D      + L++ V   T  + SD+    ++ +  +       
Sbjct: 79  TYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFI 131

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 34/137 (24%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAV----------- 157
           + +        +       F  +  +      + FS S  N  +L+ ++           
Sbjct: 79  TYSDISHLHFDEC-----RFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDT 133

Query: 158 -------AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGA-DFS 209
                   +KAN +G            LNE + ++   V        LG   ++    ++
Sbjct: 134 TLKNTLIRHKANLSGVI----------LNEPDNSSPPSVSGGGNFIRLGDIWLQMPLLWT 183

Query: 210 DAVIDLAQKQALCKYAN 226
           +  +D           +
Sbjct: 184 ENAVDGFLNHEHNNGKS 200

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 48.9 bits (116), Expect = 9e-07
 Identities = 23/176 (13%), Positives = 37/176 (21%), Gaps = 30/176 (17%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA---------- 158
           S   F       +            ++     SD +      +   +             
Sbjct: 84  SHLHFDECRFTYS-----TLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFIDTTLKNT 138

Query: 159 ---YKANFTGA----------DLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 205
              +KAN +G                  + + L +  L   +L         L      G
Sbjct: 139 LIRHKANLSGVILNEPDNSSPPSVSGGGNFIRLGDIWLQMPLLWTENAVDGFLNHEHNNG 198

Query: 206 ADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNSRRNAYGSPSSPLLSAP 261
                 +  L  K +  K           S R         R    S  S L   P
Sbjct: 199 KSILMTIDSLPDKYSQEKVQ--AMEDLVKSLRGGRLTEACIRPVESSLVSVLAHPP 252

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A Length = 627

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 11/101 (10%)

Query: 122 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV---- 177
           +H   +   ++ +S        + +       E   A   +F+ AD  +    +++    
Sbjct: 1   MHHHHHHATSSPSSPADWAKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSF 60

Query: 178 -------LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
                  +   N +N+    + ++           +  SD 
Sbjct: 61  MERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDV 101

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 69.1 bits (169), Expect = 3e-14
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 5/106 (4%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A F    L         F   + ++      DFS  ++      +    + N TG + +D
Sbjct: 55  AVFDHLSLANG-----QFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFAD 109

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 216
           + +   +  +     A                +  ++F +      
Sbjct: 110 SYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXL 155

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 68.8 bits (168), Expect = 5e-14
 Identities = 15/106 (14%), Positives = 26/106 (24%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
               +   DL         FR A F    +    F+    +    E        +     
Sbjct: 33  ENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSF 92

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
                 R  L   N  ++ L   +        A    A+F+    +
Sbjct: 93  HRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFN 138

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 66.1 bits (161), Expect = 4e-13
 Identities = 14/104 (13%), Positives = 24/104 (23%)

Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 173
             A L   ++ + +       +   R++ F                   F   D S+   
Sbjct: 28  DEAILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEW 87

Query: 174 DRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
                +        L  T    S L   + E      A    A 
Sbjct: 88  LSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFAN 131

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 62.6 bits (152), Expect = 6e-12
 Identities = 17/101 (16%), Positives = 34/101 (33%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
            +F + D      +  +F R  F   ++  ++F+ S       E   A  A+F  A+ + 
Sbjct: 75  VRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNL 134

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
              ++  L E+          +L   DL  +          
Sbjct: 135 VHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGL 175

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 5/104 (4%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
               +            F   +F++ +     F    F    L        NF  + L D
Sbjct: 60  LSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLT-----GTNFADSYLXD 114

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
            L +    + A+   A        ++ L  +      +   +++
Sbjct: 115 CLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLE 158

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 14/109 (12%), Positives = 25/109 (22%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           +  QF S D         +F    + S       F      G     +      F     
Sbjct: 63  ANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXA 122

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 217
                     N  +     LV +          ++E  D +++      
Sbjct: 123 DYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTS 171

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 56.8 bits (137), Expect = 6e-10
 Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S  ++ S    +       F R N T  +  +S      F     + A    ANF     
Sbjct: 83  SNVEWLSGSFHRV-----TFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHF 137

Query: 169 SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
           + T +      E      +L    LT S+     + G DFS    +
Sbjct: 138 NQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFE 183

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis} Length = 214

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 10/116 (8%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
             F   +L        NF  +        +     + F  A        +     ++  +
Sbjct: 95  VTFLRCNLTGT-----NFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFE 149

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD-----AVIDLAQKQAL 221
                ++L   +LT +  + T L   D      E   FS        +   Q   L
Sbjct: 150 VTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXVTPEQAIYL 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.96
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.93
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.83
2o6w_A	150	Repeat five residue (RFR) protein or pentapeptide	99.83
2bm5_A	186	MFPA, RV3361C, pentapeptide repeat family protein;	99.8
3n90_A	152	P15, thylakoid lumenal 15 kDa protein 1, chloropla	99.79
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	99.79
2xty_A	217	QNRB1; cell cycle, pentapeptide repeat, PRP, antib	99.78
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	99.77
2f3l_A	184	RFR-domain; beta helix, unknown function; 2.11A {C	99.77
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	99.76
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.76
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	99.75
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.71
3nb2_A	613	Secreted effector protein; pentapeptide, HECT doma	99.71
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.66
2qyu_A	627	Secreted effector protein; ubiquitin E3 ligase, li	99.6

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.96  E-value=4.5e-30  Score=222.47  Aligned_cols=136  Identities=39%  Similarity=0.591  Sum_probs=130.7

Q ss_pred             CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCce
Q 023440          108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  187 (282)
Q Consensus       108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~  187 (282)
                      +.+++|++++|++++|.+++|++++|.+++|++++|++++|++++|.+++|.+++|++++|++++|.+++|.+|+|++|+
T Consensus        49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~  128 (184)
T 2f3l_A           49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAV  128 (184)
T ss_dssp             ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCB
T ss_pred             ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCeeccceecCcEEcCccccCceeCHHHHHHHhhhhcCCCCCCCcchhhhcCCC
Q 023440          188 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCG  243 (282)
Q Consensus       188 l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~lc~~a~g~n~~tg~~tr~sLgc~  243 (282)
                      |.+++|.+++|.+++|++++|++|+|++.+++.+|.+++|+||+||++||+||||+
T Consensus       129 l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g~n~~t~~~tr~sl~c~  184 (184)
T 2f3l_A          129 LTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRCQ  184 (184)
T ss_dssp             CTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC-
T ss_pred             eeCCEECCCEEeCCEecCCEecCCCCCcChHHHhhccccCCCcccccchhhhcCCC
Confidence            99999999999999999999999999999999999999999999999999999996

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.93  E-value=5.6e-27  Score=196.47  Aligned_cols=138  Identities=30%  Similarity=0.404  Sum_probs=121.0

Q ss_pred             CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCce
Q 023440          108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  187 (282)
Q Consensus       108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~  187 (282)
                      +.+++|++++|++++|++++|.+++|.+++|++++|.+++|.+++|.+++|.+++|++++|++++|.+++|.+++|++++
T Consensus         8 ~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~   87 (152)
T 3n90_A            8 YGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNAN   87 (152)
T ss_dssp             CCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred             ccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCC
Confidence            45667777888888888888888888888888888888888888888888888888888888888888888888888999


Q ss_pred             ecCCeecc-ceecCcEEcCccccCceeCHHHHHHHhhhhcCCCCCCCcchhhhcCCCCC
Q 023440          188 LVRTVLTR-SDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS  245 (282)
Q Consensus       188 l~~a~l~~-a~l~~a~L~gAdf~~A~l~~~~~~~lc~~a~g~n~~tg~~tr~sLgc~~~  245 (282)
                      |.+++|.+ ++|.+++|++|+|++++|.+.+++.+|.+++|+||.+|..||++|.|...
T Consensus        88 l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~g~n~~~~~~tr~~~~~~~~  146 (152)
T 3n90_A           88 LEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCNLE  146 (152)
T ss_dssp             CTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHHHHHHHCCCBCTTTCCBHHHHTTTTC-
T ss_pred             CCCCEEcCCceECCCEecCCEecCCccCcHHHHHHhhhhhCcCCccccchhhhhhhhhh
Confidence            99999984 99999999999999999999999999999999999999999999987643

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.83  E-value=1.4e-21  Score=163.58  Aligned_cols=106  Identities=19%  Similarity=0.257  Sum_probs=47.9

Q ss_pred             CCceEccccccccccCCc-------------eeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccce
Q 023440          109 SAAQFGSADLRKAVHVKE-------------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR  175 (282)
Q Consensus       109 s~~~f~~~dL~~~~f~~a-------------dl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~  175 (282)
                      .+++|++++|++++|.++             +|.+++|.+++|.+++|++++|.+++|.+++|.+|+|.+++|++++|.+
T Consensus        16 ~~~~l~~~dL~~~~l~~~~~~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~   95 (150)
T 2o6w_A           16 VGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLEN   95 (150)
T ss_dssp             TTCBCTTCBCTTCBCSSSCBCC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred             CCcccCCCCCCCCCcccCcccccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCC
Confidence            344455544444444444             4444444444444444444444444444444444444444444444444


Q ss_pred             eeeccccccCceecCCeeccceecCcEEcCccccCceeC
Q 023440          176 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID  214 (282)
Q Consensus       176 a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~  214 (282)
                      ++|.+|+|++++|.+++|++++|.+++|++++|++++|.
T Consensus        96 a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~  134 (150)
T 2o6w_A           96 AILIGANLQGANLENANLQGANLENANLRGAILTGVNLE  134 (150)
T ss_dssp             CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CEecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCC
Confidence            444444444444444444444444444444444444443

>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}

Probab=99.83  E-value=1.1e-21  Score=164.30  Aligned_cols=94  Identities=23%  Similarity=0.368  Sum_probs=58.6

Q ss_pred             ccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceecCCeeccceecCc
Q 023440          122 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGA  201 (282)
Q Consensus       122 ~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a  201 (282)
                      +|.+++|.+++|.+++|++++|.+++|++++|.+++|.+++|.+++|++++|.+++|.+++|++|+|.+++|.+++|.++
T Consensus        47 ~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a  126 (150)
T 2o6w_A           47 PFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGA  126 (150)
T ss_dssp             STTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred             ccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcC
Confidence            66777666666666666666666666666666666666666666666666666666666555555555555555555555


Q ss_pred             EEcCccccCceeCH
Q 023440          202 IIEGADFSDAVIDL  215 (282)
Q Consensus       202 ~L~gAdf~~A~l~~  215 (282)
                      +|.+++|++++|.+
T Consensus       127 ~l~~a~l~~a~l~g  140 (150)
T 2o6w_A          127 ILTGVNLEETHLKG  140 (150)
T ss_dssp             BCTTCBCTTCBCTT
T ss_pred             CccCCCCCCCCcCC
Confidence            55555555555544

>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A

Probab=99.80  E-value=5.2e-20  Score=158.09  Aligned_cols=55  Identities=24%  Similarity=0.334  Sum_probs=27.2

Q ss_pred             cccccCcccceeeeccccccCceecCCeeccceecCcEEcCccccCceeCHHHHH
Q 023440          165 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ  219 (282)
Q Consensus       165 gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~  219 (282)
                      +++|++++|.+++|.+|+|++++|.+++|++++|.+++|++++|++|++.+.++.
T Consensus       104 ~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~  158 (186)
T 2bm5_A          104 GLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWR  158 (186)
T ss_dssp             TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHH
T ss_pred             CCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeeccccc
Confidence            3333334444444444444444444455555555555555555556665555543

>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0

Probab=99.79  E-value=9.6e-21  Score=158.44  Aligned_cols=108  Identities=23%  Similarity=0.321  Sum_probs=55.6

Q ss_pred             CceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceec
Q 023440          110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV  189 (282)
Q Consensus       110 ~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~  189 (282)
                      +++|.+++|++++|.+++|++++|.+++|.+++|.+++|.+++|.+++|.+|+|.+++|++|+|.+++|.+|+|++++|.
T Consensus         5 g~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~   84 (152)
T 3n90_A            5 GGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLT   84 (152)
T ss_dssp             GCCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred             CCcccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcC
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCeeccceecC-cEEcCccccCceeCHHH
Q 023440          190 RTVLTRSDLGG-AIIEGADFSDAVIDLAQ  217 (282)
Q Consensus       190 ~a~l~~a~l~~-a~L~gAdf~~A~l~~~~  217 (282)
                      +++|.+++|.+ ++|++++|++|+|.+..
T Consensus        85 ~a~l~~a~~~g~~~~~~a~l~~a~~~~a~  113 (152)
T 3n90_A           85 NANLEGATMMGNTSFKGSNITGADFTDVP  113 (152)
T ss_dssp             TCBCTTCBCCSSCBCTTCBCTTCBCTTCC
T ss_pred             CCCCCCCEEcCCceECCCEecCCEecCCc
Confidence            55555555552 55555555555554443

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=99.79  E-value=7.5e-20  Score=160.21  Aligned_cols=30  Identities=10%  Similarity=0.049  Sum_probs=15.0

Q ss_pred             eeccceecCcEEcCccccCceeCHHHHHHH
Q 023440          192 VLTRSDLGGAIIEGADFSDAVIDLAQKQAL  221 (282)
Q Consensus       192 ~l~~a~l~~a~L~gAdf~~A~l~~~~~~~l  221 (282)
                      +|++++|.+++|.+++|++|+|+..|...+
T Consensus       176 ~l~~a~l~~~~~~~a~l~ga~~~~~q~~~l  205 (214)
T 2w7z_A          176 DFSQNTFERLTFSPNYLSGLXVTPEQAIYL  205 (214)
T ss_dssp             BCTTSBCSCCBCCGGGCTTCEECHHHHHHH
T ss_pred             CcccCCcCceEcCHHHcCCcccCHHHHHHH
Confidence            333334444444444555666666665554

>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A

Probab=99.78  E-value=1.6e-19  Score=158.29  Aligned_cols=69  Identities=23%  Similarity=0.224  Sum_probs=35.1

Q ss_pred             cceeccceeccccccCcccceeeeccccccCceecCCeeccceecCcEEcCccccCceeCHHHHHHHhh
Q 023440          155 KAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCK  223 (282)
Q Consensus       155 ~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~lc~  223 (282)
                      +++|.+++|.+++|++++|.+++|.+++|++++|++++|++++|.++++++++|++++++..|...+.+
T Consensus       141 ~~~~~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~adl~~a~l~~~~l~~a~l~ga~~~~~q~~~l~~  209 (217)
T 2xty_A          141 ENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLME  209 (217)
T ss_dssp             SCBCTTCBCTTCBCTTCBCTTCBCTTCCTTSSBCTTCBCTTCBCTTCCTTTSCCTTCEECHHHHHHHHH
T ss_pred             CCCcCCCeeCcCEECCCccCCCCCCCCCcCCCcCCCCcCCCCCcCCCcCCCCccCcCEechHHHHHHHH
Confidence            333333333334444444444444444444444444555555555555555666666777777666543

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=99.77  E-value=1.6e-19  Score=158.13  Aligned_cols=24  Identities=8%  Similarity=0.156  Sum_probs=8.5

Q ss_pred             ccCcccceeeeccccccCceecCC
Q 023440          168 LSDTLMDRMVLNEANLTNAVLVRT  191 (282)
Q Consensus       168 ls~a~l~~a~f~~adL~~A~l~~a  191 (282)
                      |++++|.+++|.+|+|++++|.++
T Consensus       127 f~~a~l~~~~f~~~~l~~a~f~~a  150 (214)
T 2w7z_A          127 FRFANFNLVHFNQTRLVESEFFEV  150 (214)
T ss_dssp             CTTCEEEEEEEESCBCTTCBCTTC
T ss_pred             CCcCccCceEEEecccCCCCccCC
Confidence            333333333333333333333333

>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A

Probab=99.77  E-value=2.1e-19  Score=155.34  Aligned_cols=110  Identities=24%  Similarity=0.253  Sum_probs=79.9

Q ss_pred             ceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceecC
Q 023440          111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR  190 (282)
Q Consensus       111 ~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~  190 (282)
                      ..+.+++|++++|.+++|++++|.+++|.+|+|.+++|++++|.+++|.+|+|.+++|++++|.+++|.+++|++|+|.+
T Consensus        47 ~~~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~  126 (184)
T 2f3l_A           47 VTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTN  126 (184)
T ss_dssp             -----CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTT
T ss_pred             ccccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCC
Confidence            45557777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CeeccceecCcEEcCccccCceeCHHHHHH
Q 023440          191 TVLTRSDLGGAIIEGADFSDAVIDLAQKQA  220 (282)
Q Consensus       191 a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~  220 (282)
                      ++|++++|.+++|++++|++|+|.+..+..
T Consensus       127 a~l~~a~l~~a~f~~a~L~gadf~~a~l~~  156 (184)
T 2f3l_A          127 AVLTEAIMMRTKFDDAKITGADFSLAVLDV  156 (184)
T ss_dssp             CBCTTCEEEEEECTTCBCTTCBCTTCEECH
T ss_pred             CEeeCCEECCCEEeCCEecCCEecCCCCCc
Confidence            777777777777777777777777665443

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=99.76  E-value=3.1e-19  Score=155.41  Aligned_cols=44  Identities=23%  Similarity=0.273  Sum_probs=22.9

Q ss_pred             cccccCceecCCeeccceecCcEEcCccccCceeCHHHHHHHhh
Q 023440          180 EANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCK  223 (282)
Q Consensus       180 ~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~lc~  223 (282)
                      +++|.+++|++++|++++|.++++++++|++++++..|+..+++
T Consensus       165 ~a~l~~~~l~~a~l~~a~l~~~~l~~~~l~ga~~~~~q~~~l~~  208 (216)
T 3pss_A          165 QIDWASVNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLE  208 (216)
T ss_dssp             SCCGGGSBCTTCBCTTCCCTTCCTTTSCCTTCEEEGGGHHHHHH
T ss_pred             CCeecCcccCCCCccCCEecCcccccCcccCcEeCHHHHHHHHH
Confidence            33333444444444444455555555566666666666666554

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.76  E-value=6.8e-19  Score=151.51  Aligned_cols=105  Identities=11%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             CCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcc------cceeeecccc
Q 023440          109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL------MDRMVLNEAN  182 (282)
Q Consensus       109 s~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~------l~~a~f~~ad  182 (282)
                      .+++|++++|++++|++++|.+++|.+|+|++|+|++++|.+++|.++.|.+|+|.+++|++++      +.+++|.+|+
T Consensus        27 ~~~~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~  106 (200)
T 2xt2_A           27 ESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCI  106 (200)
T ss_dssp             ESCEEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCB
T ss_pred             ccCEEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCc
Confidence            3455555555555555555555555555555666666666666666666666666666655555      4444444444


Q ss_pred             ccCceecCCeeccceecCcEEcCccccCcee
Q 023440          183 LTNAVLVRTVLTRSDLGGAIIEGADFSDAVI  213 (282)
Q Consensus       183 L~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l  213 (282)
                      |++++|.+++|.+++|.+++|++++|++|+|
T Consensus       107 l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l  137 (200)
T 2xt2_A          107 LNDSLFYGLYLAGVKMVECRIHDANFTEADC  137 (200)
T ss_dssp             CTTCBCTTCBCTTCEEESCBCTTCBCTTCBC
T ss_pred             ccccEEccCccCCCEecCCEeecccCCCCcc
Confidence            4444444444444444444333333333333

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=99.75  E-value=3.5e-19  Score=153.31  Aligned_cols=13  Identities=0%  Similarity=-0.118  Sum_probs=4.7

Q ss_pred             eccceeccccccC
Q 023440          158 AYKANFTGADLSD  170 (282)
Q Consensus       158 l~~a~l~gAdls~  170 (282)
                      |.+|+|++++|.+
T Consensus       102 f~~~~l~~a~f~~  114 (200)
T 2xt2_A          102 FERCILNDSLFYG  114 (200)
T ss_dssp             EESCBCTTCBCTT
T ss_pred             EEcCcccccEEcc
Confidence            3333333333333

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.71  E-value=3e-18  Score=171.62  Aligned_cols=105  Identities=23%  Similarity=0.333  Sum_probs=46.8

Q ss_pred             CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCce
Q 023440          108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV  187 (282)
Q Consensus       108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~  187 (282)
                      +++++|++++|++++|.+++|.+++|.+|+|++|+|.+|+|.+++|.+|+|.+|+|.+|+|++|+|. +.|.+|+|++|+
T Consensus        34 fsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~-a~L~~A~LsgAd  112 (613)
T 3nb2_A           34 YSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIR-ALFENSNFSNSN  112 (613)
T ss_dssp             CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEE-EECTTCBCTTCB
T ss_pred             eCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCccc-ceeccCEecCCe
Confidence            3444444444444444444444444444444444555555555555555555555555555544411 114444444444


Q ss_pred             ecCCeeccceecC--cEEcCccccCcee
Q 023440          188 LVRTVLTRSDLGG--AIIEGADFSDAVI  213 (282)
Q Consensus       188 l~~a~l~~a~l~~--a~L~gAdf~~A~l  213 (282)
                      |.+|+|++++|.+  |+|++|+|++|.|
T Consensus       113 L~~AdL~gA~f~~~~adL~gAdL~gA~L  140 (613)
T 3nb2_A          113 LKNASFKGSSYIQYPPILNEADLTGAII  140 (613)
T ss_dssp             CTTCBCTTCBCSSSCCBCTTCBCTTCEE
T ss_pred             ecccEEeccEEecCccceeccccCCCee
Confidence            4444444444433  3333333333333

>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A

Probab=99.71  E-value=3.6e-18  Score=171.04  Aligned_cols=110  Identities=17%  Similarity=0.274  Sum_probs=71.5

Q ss_pred             CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceecccc----ccCcccceeeeccccc
Q 023440          108 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD----LSDTLMDRMVLNEANL  183 (282)
Q Consensus       108 ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAd----ls~a~l~~a~f~~adL  183 (282)
                      +++++|.+++|++++|.+++|.+++|.+|+|.+|+|.+|+|.+++|.+|+|.+|+|++|+    |.+|+|.+++|.+|+|
T Consensus        39 Lsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAdL~~AdL  118 (613)
T 3nb2_A           39 LSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASF  118 (613)
T ss_dssp             CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCBCTTCBC
T ss_pred             ecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCeecccEE
Confidence            556666666666666666666666666666666666666666666666666666666666    6666666666666666


Q ss_pred             cCceecC--CeeccceecCcEE-cCccccCceeCHHH
Q 023440          184 TNAVLVR--TVLTRSDLGGAII-EGADFSDAVIDLAQ  217 (282)
Q Consensus       184 ~~A~l~~--a~l~~a~l~~a~L-~gAdf~~A~l~~~~  217 (282)
                      ++++|.+  |+|++++|.+|+| ++++|++|+|++.+
T Consensus       119 ~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a~  155 (613)
T 3nb2_A          119 KGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVK  155 (613)
T ss_dssp             TTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCCS
T ss_pred             eccEEecCccceeccccCCCeeCCCceecCCCccCCe
Confidence            6666665  6666666666666 66666666665543

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.66  E-value=4.5e-17  Score=161.83  Aligned_cols=107  Identities=16%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             CceEccccccccccCCc------eeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccc
Q 023440          110 AAQFGSADLRKAVHVKE------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANL  183 (282)
Q Consensus       110 ~~~f~~~dL~~~~f~~a------dl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL  183 (282)
                      +.+|+++||++++|.++      +..+++|.+++|++|+|.+++|++++|.+|+|.+|+|++|+|.+|+|.+|+|.+|+|
T Consensus        39 drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL  118 (627)
T 2qyu_A           39 DRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFL  118 (627)
T ss_dssp             TTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEE
T ss_pred             CCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCccc
Confidence            46677777777776664      223333444444444444444444444444444444444444444444444444444


Q ss_pred             cCceec--CCeeccceecCcEE-cCccccCceeCHH
Q 023440          184 TNAVLV--RTVLTRSDLGGAII-EGADFSDAVIDLA  216 (282)
Q Consensus       184 ~~A~l~--~a~l~~a~l~~a~L-~gAdf~~A~l~~~  216 (282)
                      .+|+|.  +|+|.+|+|.+++| +||+|++|+|++.
T Consensus       119 ~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~a  154 (627)
T 2qyu_A          119 QYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEP  154 (627)
T ss_dssp             CCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCC
T ss_pred             CCccccCCCCeeCCCCCCCCccccCccCCCCcCCCC
Confidence            444443  45555555555555 4566666666544

>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A

Probab=99.60  E-value=4e-16  Score=155.06  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=44.5

Q ss_pred             CCCceEcccccccc------ccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccc
Q 023440          108 GSAAQFGSADLRKA------VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA  181 (282)
Q Consensus       108 ls~~~f~~~dL~~~------~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~a  181 (282)
                      +++++|++++|.++      +..+|+|.|++|++++|++++|++++|++|+|.+|+|.+|+|++|+|++|+|.+++|.+|
T Consensus        42 Fsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~gA  121 (627)
T 2qyu_A           42 FSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYS  121 (627)
T ss_dssp             CTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECCC
T ss_pred             CCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCCc
Confidence            55666666665554      233333333333333333333333333333333333333333333333333333333333


Q ss_pred             ccc--CceecCCeecccee-cCcEEcCccccCce
Q 023440          182 NLT--NAVLVRTVLTRSDL-GGAIIEGADFSDAV  212 (282)
Q Consensus       182 dL~--~A~l~~a~l~~a~l-~~a~L~gAdf~~A~  212 (282)
                      +|+  +|+|.+|+|++++| .+|+|+||+|.++.
T Consensus       122 ~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad  155 (627)
T 2qyu_A          122 ITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPD  155 (627)
T ss_dssp             TTCCSCCEEEEEECTTCEECSCCEEEEEECCCCC
T ss_pred             cccCCCCeeCCCCCCCCccccCccCCCCcCCCCc
Confidence            332  34444444444444 34444444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d2f3la1	132	b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cya	5e-23
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	1e-14
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	6e-11
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	2e-07
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	5e-07
d2j8ka1	175	b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme	2e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	1e-05
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.003
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.003
d2bm5a1	181	b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (M	0.004

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]} Length = 132

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

 Score = 89.5 bits (221), Expect = 5e-23
 Identities = 51/132 (38%), Positives = 72/132 (54%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A +    L       ++   A FT+AD+ +S+FS +   GA    +    A+  GADL++
Sbjct: 1   ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTN 60

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNP 230
            L        A+LTNAVL   ++ R+    A I GADFS AV+D+ +   LC  A+G NP
Sbjct: 61  GLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNP 120

Query: 231 ITGVSTRKSLGC 242
            TGVSTR+SL C
Sbjct: 121 KTGVSTRESLRC 132

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 68.4 bits (166), Expect = 1e-14
 Identities = 27/100 (27%), Positives = 44/100 (44%)

Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
           A    A L  A+        A    A+++ ++   +  + A + +A   +AN   ADLS 
Sbjct: 75  ADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSG 134

Query: 171 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD 210
             +    L++ANL  A L R  LT ++L  A +EG     
Sbjct: 135 ADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEG 174

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 58.0 bits (139), Expect = 6e-11
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 121 AVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLN- 179
           A         A    A + E+  + +    A LE+A+   AN   ADLS+  ++   L+ 
Sbjct: 75  ADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAADLSG 134

Query: 180 ----EANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 214
                A+L  A L +  L R++L GA +E A+    +++
Sbjct: 135 ADLAIADLHQANLHQAALERANLTGANLEDANLEGTILE 173

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 15/80 (18%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
             A    A++R+A     +   AN  +AD+  +D + +  + A L +A   +AN TGA+L
Sbjct: 108 EQAILSHANIREA-----DLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANL 162

Query: 169 SDTLMDRMVLNEANLTNAVL 188
            D          ANL   +L
Sbjct: 163 ED----------ANLEGTIL 172

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 46.4 bits (109), Expect = 5e-07
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 30/115 (26%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVA---------------------------- 158
           +F   +   A +   + SG+  +GA L++A                              
Sbjct: 16  DFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKA 75

Query: 159 --YKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 211
               A    A L   ++D  VLN+ANL  A L + +L+ +++  A +  A+   A
Sbjct: 76  DLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAA 130

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]} Length = 175

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%)

Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
           S A    ADL +A     +   A+   AD+ +++   +    A L  A    AN  G  L
Sbjct: 113 SHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTIL 172

Query: 169 SD 170
             
Sbjct: 173 EG 174

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 126 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM 176
           + +    FT  D R+ D S      A   +      +F+G +L+++     
Sbjct: 1   QQWVDCEFTGRDFRDEDLSRLHTERAMFSEC-----DFSGVNLAESQHRGS 46

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 13/55 (23%), Positives = 21/55 (38%)

Query: 167 DLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 221
           DL   ++    L+ A  T A L    L  + +   +   A    A +D+ Q  A 
Sbjct: 117 DLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAF 171

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 112 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAY 152
           Q+   +        E+  R +   A   E DFSG     + 
Sbjct: 2   QWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQ 42

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 186
           N          + ++D       GA L  A    A    ADL    +D ++   A+L  A
Sbjct: 102 NLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGA 161

Query: 187 VL-VRTVLTRSDLGGAIIEG 205
            + V   +  +   G  + G
Sbjct: 162 RVDVDQAVAFAAAHGLCLAG 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.95
d2f3la1	132	Lumenal RFR-domain protein {Cyanothece sp. atcc 51	99.78
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.72
d2bm5a1	181	Hypothetical protein Rv3361c (MT3469) {Mycobacteri	99.7
d2j8ka1	175	NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}	99.69

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.95  E-value=8.9e-29  Score=200.36  Aligned_cols=132  Identities=39%  Similarity=0.587  Sum_probs=129.4

Q ss_pred             ceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceecC
Q 023440          111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR  190 (282)
Q Consensus       111 ~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~~  190 (282)
                      ++|++++|++++|++++|.+++|.+++|++++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+++|++++|.+
T Consensus         1 A~F~~~~L~~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~   80 (132)
T d2f3la1           1 ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE   80 (132)
T ss_dssp             CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTT
T ss_pred             CccCCCCccCCcCCCCcCCCCcccCCCCccccccccccceeeecccccccccccccccccccccccccchhhhccCCcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeeccceecCcEEcCccccCceeCHHHHHHHhhhhcCCCCCCCcchhhhcCC
Q 023440          191 TVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC  242 (282)
Q Consensus       191 a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~lc~~a~g~n~~tg~~tr~sLgc  242 (282)
                      ++|.+++|.+++|++++|++|.|++.+++.+|.+++|+||.++.+||.+|||
T Consensus        81 a~l~~a~~~~a~l~~adfs~a~L~~~~l~~~~~~~~g~n~~~~~~~~~~l~~  132 (132)
T d2f3la1          81 AIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRC  132 (132)
T ss_dssp             CEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC
T ss_pred             CCcCCCCcCCCEECcCCCCCccCCHHHHHHHhccCcccCCCCcchhhhccCC
Confidence            9999999999999999999999999999999999999999999999999999

>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Lumenal RFR-domain protein
species: Cyanothece sp. atcc 51142 [TaxId: 43989]

Probab=99.78  E-value=1.2e-20  Score=151.95  Aligned_cols=99  Identities=22%  Similarity=0.277  Sum_probs=41.7

Q ss_pred             CceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccceeccccccCcccceeeeccccccCceec
Q 023440          110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV  189 (282)
Q Consensus       110 ~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~gAdls~a~l~~a~f~~adL~~A~l~  189 (282)
                      +++|++++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+++|.+++|.
T Consensus        10 ~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~a~l~~a~~~   89 (132)
T d2f3la1          10 GEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFD   89 (132)
T ss_dssp             TCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEECT
T ss_pred             CCcCCCCcCCCCcccCCCCccccccccccceeeecccccccccccccccccccccccccchhhhccCCcCCCCcCCCCcC
Confidence            34444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCeeccceecCcEEcCccc
Q 023440          190 RTVLTRSDLGGAIIEGADF  208 (282)
Q Consensus       190 ~a~l~~a~l~~a~L~gAdf  208 (282)
                      +++|++++|++++|+++++
T Consensus        90 ~a~l~~adfs~a~L~~~~l  108 (132)
T d2f3la1          90 DAKITGADFSLAVLDVYEV  108 (132)
T ss_dssp             TCBCTTCBCTTCEECHHHH
T ss_pred             CCEECcCCCCCccCCHHHH
Confidence            4444444444444433333

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=8e-19  Score=148.00  Aligned_cols=57  Identities=23%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             eccccccCcccceeeeccccccCceecCCeeccceecCcEEcCccccCceeCHHHHH
Q 023440          163 FTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ  219 (282)
Q Consensus       163 l~gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~  219 (282)
                      |++++|+++.|.+++|.+++|++++|.+++|++++|.+++|+++||+++.|++.++.
T Consensus        98 ~~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~a~l~~adf~~~~~~~~~~~  154 (181)
T d2bm5a1          98 LRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWR  154 (181)
T ss_dssp             CTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHH
T ss_pred             cccccccchhhcccceecccccccchhheeecCcCccCCCcCCCCcCCCEecCCCcC
Confidence            333333444444445555555555555555556666666666666666666666543

>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: Hypothetical protein Rv3361c (MT3469)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=2.7e-18  Score=144.74  Aligned_cols=57  Identities=32%  Similarity=0.373  Sum_probs=25.2

Q ss_pred             ccccccCcccceeeeccccccCceecCCeeccceecCcEEcCccccCceeCHHHHHH
Q 023440          164 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQA  220 (282)
Q Consensus       164 ~gAdls~a~l~~a~f~~adL~~A~l~~a~l~~a~l~~a~L~gAdf~~A~l~~~~~~~  220 (282)
                      .+++|++++|.++.|.+++|++++|.+++|.+++|.+++|.+++|++++|.+.++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~~~~a~l~~adf~~~~~~~  150 (181)
T d2bm5a1          94 GGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDP  150 (181)
T ss_dssp             TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCH
T ss_pred             cccccccccccchhhcccceecccccccchhheeecCcCccCCCcCCCCcCCCEecC
Confidence            333333333333344444444444444444444444444444445555554444433

>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pentapeptide repeat-like
family: Pentapeptide repeats
domain: NP275-NP276
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.69  E-value=7.6e-18  Score=141.16  Aligned_cols=66  Identities=29%  Similarity=0.300  Sum_probs=28.6

Q ss_pred             hhhhhccCcccc-CCCceEccccccccccCCceeeCcEEccceecCceecCccccCceeccceeccc
Q 023440           96 KYEAETRGEFGI-GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKA  161 (282)
Q Consensus        96 ~~~~~~~g~~~~-ls~~~f~~~dL~~~~f~~adl~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a  161 (282)
                      +|..+++....+ +++++|++++|++++|.++.|.+++|.+++|.+|+|.+++|.++.|.+++|.++
T Consensus         9 ~~~~~e~dF~~~dls~~~f~~~~f~~~~f~~~~f~~~~f~~~~~~~~~f~~~~~~~~~~~~~~~~~~   75 (175)
T d2j8ka1           9 LYAAGERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGANLSKA   75 (175)
T ss_dssp             HHHTTCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred             HHHhcccCcCcCcCCCCccCCcCCCCCCcCCCCcchhhccccccccccccccccccccccccccccc
Confidence            344444443332 444444444444444444444444444444444444444443333333333333