Citrus Sinensis ID: 023467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLYHHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSYAPTHHSMLSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQKSQLEPEILASKP
Secondary Structure (PSIPRED)
ccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHccccccccccccEEEEccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEcccEEEEccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHccHHccHHHHcHccHHHHHHHHccHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvdyewgnpstilltgdeatqepnqsrqifdhyttqepfsqhstnnnnyfhqpitnttlyhhhhqqqqpppppppphhhhhhnnnnnnsnnahslfdpraytsassyapthhsmlsidaasggyfmipkteevsrpvdnfasriglnlggrtyfssadddfvsrlyrrprpgeagsaniprcqaegcsadlthakhyhrrhkvcefhSKASTVIAAGLTQRFCQQCsrfhllsefdngkrSCRKRLADHnrrrrksqqqptttplqdnqksqlepeilaskp
Flexible Loop (DISEMBL)
MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLYHHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSYAPTHHSMLSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRpgeagsaniprcqAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHllsefdngkrscrkrladhnrrrrksqqqptttplqdnqksqlepeilaskp
Low Complexity Region (SEG)
MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLYhhhhqqqqpppppppphhhhhhnnnnnnsnnAHSLFDPRAYTSASSYAPTHHSMLSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQKSQLEPEILASKP
Disordered region (IsUnstruct)
******************************************************************************************************************LSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLY***************CQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEF***********************************************
Disordered Region (DISOPRED)
MVDYE**NP**********************HYTTQEPFSQHSTNNNNYFHQPITNTTLY***********************************F**************************************************NLGGRTY******************************AEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDN**R******************************************
Disordered Region (DISEMBL)
MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTL*********************HHNNNNNNSNNAHSLFDPRAYTSASSYAPTHHSMLSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLA*************************LEPEILASKP
Disordered Region (DISPRO)
*VDYEWGNPSTILLTGDE****PNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLYHHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSYAPTHHSMLSIDAASGGYFMIPKTE********FASRIGLNLGGRTYFSSA********************NIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKR*************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLYHHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSYAPTHHSMLSIDAASGGYFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQKSQLEPEILASKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q8GXL3	333	Squamosa promoter-binding	yes	no	0.897	0.759	0.524	9e-70
Q0DAE8	426	Squamosa promoter-binding	yes	no	0.439	0.291	0.610	5e-36
A2YFT9	426	Squamosa promoter-binding	N/A	no	0.439	0.291	0.610	5e-36
O04003	399	Protein LIGULELESS 1 OS=Z	N/A	no	0.368	0.260	0.644	1e-35
Q01KM7	416	Squamosa promoter-binding	N/A	no	0.397	0.269	0.615	1e-35
Q7XPY1	416	Squamosa promoter-binding	no	no	0.397	0.269	0.615	2e-35
Q8RY95	1035	Squamosa promoter-binding	no	no	0.322	0.087	0.652	6e-31
Q9S7P5	927	Squamosa promoter-binding	no	no	0.439	0.133	0.485	2e-30
Q94JW8	405	Squamosa promoter-binding	no	no	0.397	0.276	0.564	5e-30
Q75LH6	969	Squamosa promoter-binding	no	no	0.301	0.087	0.658	1e-29

>sp|Q8GXL3|SPL8_ARATH Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana GN=SPL8 PE=1 SV=2

 Score =  263 bits (673), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 190/303 (62%), Gaps = 50/303 (16%)

Query: 1   MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLY 60
           M+DYEW NPS+I+L+GDE   + + +R  F  +   +P S +   NN++ H  I+   L 
Sbjct: 1   MLDYEWDNPSSIVLSGDERNPDSDPTRSSFSFF---DPISHY---NNDHRHITISPPLLS 54

Query: 61  HHHHQQQQPPPPPPPPHHHHHHNNNNNNSNN--------AHSLFDPRAYTS-ASSYAPTH 111
              +QQQQ          HH       NSNN         HSL+     T+   +  P +
Sbjct: 55  SFSNQQQQ----------HHLTLYGQTNSNNQFLHHHHHHHSLYGSTTTTTPYGASDPIY 104

Query: 112 H--------SMLSIDAASGGY-------FMIPKTEEVSRPVDNFASRIGLNLGGRTYFSS 156
           H        S+ S D    G        F+IPKTE     VD  ++RIGLNLGGRTYFS+
Sbjct: 105 HPHSSAPPASLFSYDQTGPGSGSGSSYNFLIPKTE-----VDFTSNRIGLNLGGRTYFSA 159

Query: 157 ADDDFVSRLYRRPRPGEAGSAN---IPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTV 213
           ADDDFVSRLYRR RPGE+G AN    PRCQAEGC+ADL+HAKHYHRRHKVCEFHSKASTV
Sbjct: 160 ADDDFVSRLYRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTV 219

Query: 214 IAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQKSQL 273
           +AAGL+QRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK  Q  + T  QD    + 
Sbjct: 220 VAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASAT--QDTGTGKT 277

Query: 274 EPE 276
            P+
Sbjct: 278 TPK 280

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0DAE8|SPL10_ORYSJ Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica GN=SPL10 PE=2 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 87/131 (66%), Gaps = 7/131 (5%)

Query: 127 IPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANI------- 179
           I K E      D  A RIGLNLG RTYFS  D   V RL  R R G              
Sbjct: 119 IVKREGGGGGQDAAAGRIGLNLGRRTYFSPGDMLAVDRLLMRSRLGGVFGLGFGGAHHQP 178

Query: 180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGK 239
           PRCQAEGC ADL+ AKHYHRRHKVCE+H+KAS V A+G  QRFCQQCSRFH+L+EFD  K
Sbjct: 179 PRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAK 238

Query: 240 RSCRKRLADHN 250
           RSCRKRLA+HN
Sbjct: 239 RSCRKRLAEHN 249

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YFT9|SPL10_ORYSI Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica GN=SPL10 PE=2 SV=1

 Score =  151 bits (382), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/131 (61%), Positives = 87/131 (66%), Gaps = 7/131 (5%)

Query: 127 IPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANI------- 179
           I K E      D  A RIGLNLG RTYFS  D   V RL  R R G              
Sbjct: 119 IVKREGGGGGQDAAAGRIGLNLGRRTYFSPGDMLAVDRLLMRSRLGGVFGLGFGGAHHQP 178

Query: 180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGK 239
           PRCQAEGC ADL+ AKHYHRRHKVCE+H+KAS V A+G  QRFCQQCSRFH+L+EFD  K
Sbjct: 179 PRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFHVLTEFDEAK 238

Query: 240 RSCRKRLADHN 250
           RSCRKRLA+HN
Sbjct: 239 RSCRKRLAEHN 249

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. indica (taxid: 39946)

>sp|O04003|LG1_MAIZE Protein LIGULELESS 1 OS=Zea mays GN=LG1 PE=2 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 85/118 (72%), Gaps = 14/118 (11%)

Query: 141 ASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHYHRR 200
           A+++GLNLG RTYF              PR G     + PRCQAEGC ADL+ AK YHRR
Sbjct: 157 ATQLGLNLGYRTYFP-------------PRGGYTYGHHPPRCQAEGCKADLSSAKRYHRR 203

Query: 201 HKVCEFHSKASTVI-AAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQ 257
           HKVCE HSKA  V+ A GL QRFCQQCSRFHLL EFD+ K+SCRKRLADHNRRRRKS+
Sbjct: 204 HKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSK 261

Involved in the formation of ligules and auricles during leaf organogenesis.

Zea mays (taxid: 4577)

>sp|Q01KM7|SPL8_ORYSI Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. indica GN=SPL8 PE=2 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 18/130 (13%)

Query: 133 VSRPVDNFAS----RIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCS 188
           VS   +N AS    ++GLNLG RTYF              PR G     + PRCQAEGC 
Sbjct: 145 VSSAEENMASFAATQLGLNLGYRTYFP-------------PRGGYTYGHHPPRCQAEGCK 191

Query: 189 ADLTHAKHYHRRHKVCEFHSKASTVI-AAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLA 247
           ADL+ AK YHRRHKVCE HSKA  V+ A GL QRFCQQCSRFHLL EFD+ K+SCRKRLA
Sbjct: 192 ADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLA 251

Query: 248 DHNRRRRKSQ 257
           DHNRRRRKS+
Sbjct: 252 DHNRRRRKSK 261

Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7XPY1|SPL8_ORYSJ Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. japonica GN=SPL8 PE=2 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 18/130 (13%)

Query: 133 VSRPVDNFAS----RIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCS 188
           VS   +N AS    ++GLNLG RTYF              PR G     + PRCQAEGC 
Sbjct: 145 VSSAEENMASFAATQLGLNLGYRTYFP-------------PRGGYTYGHHPPRCQAEGCK 191

Query: 189 ADLTHAKHYHRRHKVCEFHSKASTVI-AAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLA 247
           ADL+ AK YHRRHKVCE HSKA  V+ A GL QRFCQQCSRFHLL EFD+ K+SCRKRLA
Sbjct: 192 ADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLA 251

Query: 248 DHNRRRRKSQ 257
           DHNRRRRKS+
Sbjct: 252 DHNRRRRKSK 261

Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3

 Score =  134 bits (338), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 69/92 (75%), Gaps = 1/92 (1%)

Query: 167 RRPRPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQC 226
           ++ R G  G  N P CQ + C+ DL+HAK YHRRHKVCE HSKA+  +     QRFCQQC
Sbjct: 106 KKVRSGSPG-GNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQC 164

Query: 227 SRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 258
           SRFHLLSEFD GKRSCR+RLA HNRRRRK+ Q
Sbjct: 165 SRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 196

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 85/138 (61%), Gaps = 14/138 (10%)

Query: 138 DNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHY 197
           D+ A R+ LNLGG     +          ++ + G    +    CQ + C ADL+  K Y
Sbjct: 91  DDDAHRLTLNLGGNNIEGNG--------VKKTKLGGGIPSRAICCQVDNCGADLSKVKDY 142

Query: 198 HRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQ 257
           HRRHKVCE HSKA+T +  G+ QRFCQQCSRFH+L EFD GKRSCR+RLA HN+RRRK+ 
Sbjct: 143 HRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKA- 201

Query: 258 QQPTT----TPLQDNQKS 271
             P T    T + D+Q S
Sbjct: 202 -NPDTIGNGTSMSDDQTS 218

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2

 Score =  131 bits (330), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 76/117 (64%), Gaps = 5/117 (4%)

Query: 143 RIGLNLGGRTYFSSADDDFVSRLY----RRPRPGEAGSANIPRCQAEGCSADLTHAKHYH 198
           RI   L       + DDD  SR +    ++ R     S N P CQ  GCS DL+ +K YH
Sbjct: 82  RIDFKLRSFLDLGNDDDDTSSRGFALPSKKSRASNLCSQN-PLCQVYGCSKDLSSSKDYH 140

Query: 199 RRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK 255
           +RH+VCE HSK S VI  GL QRFCQQCSRFH LSEFD+GKRSCR+RLA HN RRRK
Sbjct: 141 KRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRK 197

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 66/85 (77%)

Query: 173 EAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLL 232
           + GS + P CQ EGC+ADLT  + YHRRHKVCE H+KA+T +     QRFCQQCSRFH L
Sbjct: 143 QGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFCQQCSRFHPL 202

Query: 233 SEFDNGKRSCRKRLADHNRRRRKSQ 257
            EFD GKRSCR+RLA HNRRRRK++
Sbjct: 203 QEFDEGKRSCRRRLAGHNRRRRKTR 227

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
255541144	302	LIGULELESS1 protein, putative [Ricinus c	0.780	0.728	0.645	1e-84
378556261	309	squamosa promoter binding protein-like 8	0.812	0.741	0.628	8e-81
357512809	327	Squamosa promoter binding protein [Medic	0.836	0.721	0.568	4e-78
356504607	336	PREDICTED: squamosa promoter-binding-lik	0.921	0.773	0.563	6e-76
225453484	304	PREDICTED: squamosa promoter-binding-lik	0.808	0.75	0.575	2e-75
356523076	338	PREDICTED: squamosa promoter-binding-lik	0.918	0.766	0.552	3e-75
297734563	388	unnamed protein product [Vitis vinifera]	0.808	0.587	0.575	3e-75
297848300	323	hypothetical protein ARALYDRAFT_470069 [	0.886	0.773	0.547	1e-70
329025162	293	squamosa promoter binding protein-like p	0.854	0.822	0.549	4e-68
22329284	333	squamosa promoter-binding-like protein 8	0.897	0.759	0.524	5e-68

>gi|255541144|ref|XP_002511636.1| LIGULELESS1 protein, putative [Ricinus communis] gi|223548816|gb|EEF50305.1| LIGULELESS1 protein, putative [Ricinus communis]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 171/265 (64%), Positives = 196/265 (73%), Gaps = 45/265 (16%)

Query: 1   MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLY 60
           M++YEWGNPSTI+LTG+E +Q+P+Q+RQIFDHYT Q       + N+N   QP    +L+
Sbjct: 1   MLEYEWGNPSTIMLTGEEQSQDPDQNRQIFDHYTAQ-------SFNDNLLAQPAA--SLF 51

Query: 61  HHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSY-APTHHSMLSID- 118
           HH           P PH               +SL+DPRA    SSY AP H S+LS+D 
Sbjct: 52  HH-----------PNPHQ-------------VNSLYDPRA----SSYTAPHHPSLLSLDP 83

Query: 119 -----AASGGYFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGE 173
                A    YF++PKTE+V+RP D + SRIGLNLGGRTYFSSA+DDFV+RLYRR RP E
Sbjct: 84  IPTHTAPCPSYFLVPKTEQVTRPQD-YTSRIGLNLGGRTYFSSAEDDFVNRLYRRSRPVE 142

Query: 174 AGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLS 233
            GS+N PRCQAEGC+ADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLS
Sbjct: 143 PGSSNAPRCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLS 202

Query: 234 EFDNGKRSCRKRLADHNRRRRKSQQ 258
           EFDNGKRSCRKRLADHNRRRRKS Q
Sbjct: 203 EFDNGKRSCRKRLADHNRRRRKSHQ 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378556261|gb|AFC17960.1| squamosa promoter binding protein-like 8 [Betula platyphylla]

 Score =  306 bits (783), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 169/269 (62%), Positives = 195/269 (72%), Gaps = 40/269 (14%)

Query: 1   MVDYEWGNPSTILLTGDEATQ-EPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTL 59
           M+DY WGNP T++L+G+E T  +P+Q+RQIFD YT  +PF+ +S+ N      P   TT 
Sbjct: 1   MLDYGWGNPGTMMLSGEEETAPDPDQTRQIFDPYT--QPFNINSSFN------PQPATTA 52

Query: 60  YHHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYT--SASSYAPTHHSMLSI 117
           + H +        PP   H   H          HS FDPRAY   SASSY P    +LS+
Sbjct: 53  FSHFN--------PPQQTHSQLH----------HSFFDPRAYPQPSASSYRPNQ--LLSL 92

Query: 118 D-------AASGGYFMIPKTEE-VSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRP 169
           D        + GGY ++PK+EE VSR VD F SR+GLNLGGRTYFSSA+D+FV+RLYRR 
Sbjct: 93  DHPVNGAAGSGGGYLLVPKSEEAVSRSVD-FVSRLGLNLGGRTYFSSAEDEFVNRLYRRS 151

Query: 170 RPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRF 229
           RP E GSAN PRCQAEGC+ADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRF
Sbjct: 152 RPTEPGSANSPRCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRF 211

Query: 230 HLLSEFDNGKRSCRKRLADHNRRRRKSQQ 258
           HLLSEFDNGKRSCRKRLADHNRRRRK+ Q
Sbjct: 212 HLLSEFDNGKRSCRKRLADHNRRRRKTHQ 240

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512809|ref|XP_003626693.1| Squamosa promoter binding protein [Medicago truncatula] gi|355520715|gb|AET01169.1| Squamosa promoter binding protein [Medicago truncatula]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 161/283 (56%), Positives = 191/283 (67%), Gaps = 47/283 (16%)

Query: 1   MVDYEWGNPSTILLTGDE----ATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITN 56
           M+DYEWGNPS I+LTG+E    A       RQIFDHY +Q   S      +NY + P   
Sbjct: 1   MLDYEWGNPSNIMLTGNEDNSGAAATDQAHRQIFDHYASQAMLS------DNYLNGPGGG 54

Query: 57  TTL------YHHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSYAPT 110
            T+      + HHH Q  P       H+  HHN +        S FDPRA+   SS A +
Sbjct: 55  PTIDINSGDFTHHHNQFSP-------HNQQHHNIH-------QSFFDPRAFHGGSSTASS 100

Query: 111 HH--------SMLSIDAASG-----GYFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSA 157
           +         SMLS+D   G     G+ ++PK+E+V+RP+D   SR+GLNLGGRTYFSS 
Sbjct: 101 YPPPQPQPPPSMLSLDPLPGHGHSPGFLLVPKSEDVNRPIDFVGSRLGLNLGGRTYFSS- 159

Query: 158 DDDFVSRLYRR---PRPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVI 214
           +DDFV+RLYRR   P PG  GS+N PRCQAEGC+ADL+ AKHYHRRHKVCEFHSKA+TV+
Sbjct: 160 EDDFVTRLYRRSRPPEPGSTGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVV 219

Query: 215 AAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQ 257
           AAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK+Q
Sbjct: 220 AAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQ 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504607|ref|XP_003521087.1| PREDICTED: squamosa promoter-binding-like protein 8-like [Glycine max]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 177/314 (56%), Positives = 207/314 (65%), Gaps = 54/314 (17%)

Query: 1   MVDYEWGNPSTILLTGDE---ATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPI--- 54
           M+DYEWGNPSTI+L+G+E   A       RQIFDHY +      H+   +++ H P    
Sbjct: 1   MLDYEWGNPSTIMLSGNEDSSAAGSDQTHRQIFDHYAS------HTLIPDHFLHAPTHST 54

Query: 55  ------TNTTLYHHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSAS--S 106
                       HHHH   QP          HHHN N+ N ++ H+ FDPRA+  AS  S
Sbjct: 55  ATTAAAATVDFTHHHHFTPQP----------HHHNQNHMNHHHHHAFFDPRAFHGASNTS 104

Query: 107 YAPTHHSMLSID---------------AASGGYFMIPKTEEVSRPVDNFASRIGLNLGGR 151
           Y P H SMLS+D               +  GG  ++PK+E+V RP+D   SRIGLNLGGR
Sbjct: 105 YPPPH-SMLSLDPLPHVNAVGPGHGPGSGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGR 163

Query: 152 TYFSSADDDFVSRLYRRPRPGEAGS---ANIPRCQAEGCSADLTHAKHYHRRHKVCEFHS 208
           TYFSS++DDFVSRLYRR RP E GS   +N PRCQAEGC+ADL+ AKHYHRRHKVCEFHS
Sbjct: 164 TYFSSSEDDFVSRLYRRSRPVEPGSTASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHS 223

Query: 209 KASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDN 268
           KA+TVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK+QQ     P Q+ 
Sbjct: 224 KAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ-----PTQEI 278

Query: 269 QKSQLEPEILASKP 282
           QKSQ   E +A  P
Sbjct: 279 QKSQSSLENVARSP 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453484|ref|XP_002277183.1| PREDICTED: squamosa promoter-binding-like protein 8 isoform 1 [Vitis vinifera] gi|359489306|ref|XP_003633906.1| PREDICTED: squamosa promoter-binding-like protein 8 isoform 2 [Vitis vinifera]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 160/278 (57%), Positives = 188/278 (67%), Gaps = 50/278 (17%)

Query: 1   MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLY 60
           M+DYEWGNPS I+L+GDE  Q+ +Q+RQIFDHY        H T  +      +   T +
Sbjct: 1   MLDYEWGNPSPIMLSGDEPPQDSDQTRQIFDHY--------HQTFTDGL----VAPATAF 48

Query: 61  HHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSYAPTHHSMLSIDAA 120
            HH  Q QP                     + HSL+DPRAY +  +  P   +MLS++  
Sbjct: 49  FHHQSQPQP--------------------AHIHSLYDPRAYHTYQAPPP---AMLSLEPV 85

Query: 121 SGG-------YFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLY-RRPRPG 172
           +G        + ++PK+EE+  P  +F +RIGLNLGGRTYFSS +DDFV+RLY RR RP 
Sbjct: 86  AGTSAGGGTGFMVVPKSEEMV-PAADFTARIGLNLGGRTYFSS-EDDFVNRLYQRRSRPA 143

Query: 173 EAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLL 232
           E G  N PRCQAEGC+ADLTHAKHYHRRHKVCEFHSKASTV AAGLTQRFCQQCSRFHLL
Sbjct: 144 EPGLTNSPRCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVFAAGLTQRFCQQCSRFHLL 203

Query: 233 SEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQK 270
           SEFDNGKRSCRKRLADHNRRRRKSQQ     P+QDN K
Sbjct: 204 SEFDNGKRSCRKRLADHNRRRRKSQQ-----PIQDNHK 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523076|ref|XP_003530168.1| PREDICTED: squamosa promoter-binding-like protein 8-like [Glycine max]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 175/317 (55%), Positives = 207/317 (65%), Gaps = 58/317 (18%)

Query: 1   MVDYEWGNPSTILLTGDE---ATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPI--- 54
           M+DYEWGNPSTI+LTG+E   A       RQIFDHY +      H+   +++ H P+   
Sbjct: 1   MLDYEWGNPSTIMLTGNEDSSAAGSDQTHRQIFDHYAS------HTLIPDHFLHAPMHST 54

Query: 55  -----TNTTLYHHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSAS--SY 107
                  T  + HHH   QP           HH+N+ N+ ++ H+ FDPRA+  AS  SY
Sbjct: 55  ATTAAATTVDFTHHHFNPQP-----------HHHNHMNHHHHHHAFFDPRAFHGASNTSY 103

Query: 108 APTHHSMLSID-------------------AASGGYFMIPKTEEVSRPVDNFASRIGLNL 148
            P   SMLS+D                      GG  ++PK+EEV RP+D   SRIGLNL
Sbjct: 104 PPPP-SMLSLDPLPHVNAVGSGPGHGPGPGPGPGGLLLVPKSEEVGRPMDFVGSRIGLNL 162

Query: 149 GGRTYFSSADDDFVSRLYRRPRPGEAGS---ANIPRCQAEGCSADLTHAKHYHRRHKVCE 205
           GGRTYFSS++DDFVSRLYRR RP E GS   +N PRCQAEGC+ADL+ AKHYHRRHKVCE
Sbjct: 163 GGRTYFSSSEDDFVSRLYRRSRPVEPGSTISSNSPRCQAEGCNADLSQAKHYHRRHKVCE 222

Query: 206 FHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPL 265
           FHSKA+TVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK+QQ     P 
Sbjct: 223 FHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ-----PT 277

Query: 266 QDNQKSQLEPEILASKP 282
           Q+ QKSQ   + +A  P
Sbjct: 278 QEIQKSQPSLDNVARSP 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734563|emb|CBI16614.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 160/278 (57%), Positives = 188/278 (67%), Gaps = 50/278 (17%)

Query: 1   MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLY 60
           M+DYEWGNPS I+L+GDE  Q+ +Q+RQIFDHY        H T  +      +   T +
Sbjct: 85  MLDYEWGNPSPIMLSGDEPPQDSDQTRQIFDHY--------HQTFTDGL----VAPATAF 132

Query: 61  HHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSYAPTHHSMLSIDAA 120
            HH  Q QP                     + HSL+DPRAY +  +  P   +MLS++  
Sbjct: 133 FHHQSQPQPA--------------------HIHSLYDPRAYHTYQAPPP---AMLSLEPV 169

Query: 121 SGG-------YFMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLY-RRPRPG 172
           +G        + ++PK+EE+  P  +F +RIGLNLGGRTYFSS +DDFV+RLY RR RP 
Sbjct: 170 AGTSAGGGTGFMVVPKSEEMV-PAADFTARIGLNLGGRTYFSS-EDDFVNRLYQRRSRPA 227

Query: 173 EAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLL 232
           E G  N PRCQAEGC+ADLTHAKHYHRRHKVCEFHSKASTV AAGLTQRFCQQCSRFHLL
Sbjct: 228 EPGLTNSPRCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVFAAGLTQRFCQQCSRFHLL 287

Query: 233 SEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQK 270
           SEFDNGKRSCRKRLADHNRRRRKSQQ     P+QDN K
Sbjct: 288 SEFDNGKRSCRKRLADHNRRRRKSQQ-----PIQDNHK 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848300|ref|XP_002892031.1| hypothetical protein ARALYDRAFT_470069 [Arabidopsis lyrata subsp. lyrata] gi|297337873|gb|EFH68290.1| hypothetical protein ARALYDRAFT_470069 [Arabidopsis lyrata subsp. lyrata]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/287 (54%), Positives = 189/287 (65%), Gaps = 37/287 (12%)

Query: 1   MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLY 60
           M+DYEW NPS+++L+GDE  + P+         +  +P S +   NN++ H  I+   L 
Sbjct: 1   MLDYEWDNPSSLVLSGDE--RNPDSDPTTRSSLSFFDPISHY---NNDHRHITISPPLLS 55

Query: 61  HHHHQQQQPPPPPPPPHH---HHHHNNNNNNSNNAHSLFDPRAYTSASSYAPTHH----- 112
              + QQQ        HH   +   ++NNN   + H L+DPR  T   +  P +H     
Sbjct: 56  SFSNNQQQ--------HHLTLYGQSSSNNNLMFHHHHLYDPRTTTPYGASDPMYHPHSSA 107

Query: 113 --SMLSIDAASGGY----FMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLY 166
             S+ S D  SG      F+IPKTE     VD  ++RIGLNLGGRTYFS+ADDDFVSRLY
Sbjct: 108 PASLFSYDQTSGSGSSYNFLIPKTE-----VDFTSNRIGLNLGGRTYFSAADDDFVSRLY 162

Query: 167 RRPRPGEAGSAN---IPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFC 223
           RR RPGE+G  N    PRCQAEGC+ADL+HAKHYHRRHKVCEFHSKASTV+AAGL+QRFC
Sbjct: 163 RRSRPGESGMGNSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFC 222

Query: 224 QQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQK 270
           QQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK  Q  + T  QD  K
Sbjct: 223 QQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASAT--QDAAK 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|329025162|gb|AEB71564.1| squamosa promoter binding protein-like protein [Solanum chacoense]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 156/284 (54%), Positives = 185/284 (65%), Gaps = 43/284 (15%)

Query: 1   MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLY 60
           M+DY WG  S+++L+ DE  QE +Q+R  FD Y    P +Q  T N  Y HQ        
Sbjct: 1   MLDYNWGEQSSVMLSNDEQNQENDQNRDFFDPYG---PNTQTFTENP-YPHQ-------- 48

Query: 61  HHHHQQQQPPPPPPPPHHHHHHNNNNNNSNNAHSLFDPRAYTSASSYAPTHHSMLSIDAA 120
           H    QQQ        +H   H  NN       +L+DPR Y +   Y P  H   SI   
Sbjct: 49  HFPTIQQQ--------NHQFFHTQNN-----PTTLYDPRGYETC--YTP--HPQSSILQQ 91

Query: 121 SGGYFMIPKTE---------EVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRP 171
           + G+ ++PK+E          +     + +SRIGLNLGGRTYFSS++DDFV+RLYRR R 
Sbjct: 92  NSGFMVVPKSEPHQFVGSGGGIDFGSSSNSSRIGLNLGGRTYFSSSEDDFVNRLYRRSRA 151

Query: 172 GEAGS-ANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFH 230
            E GS  N PRCQAEGC+ADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFH
Sbjct: 152 VEIGSIMNTPRCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFH 211

Query: 231 LLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQKSQLE 274
           LLSEFDNGKRSCRKRLADHNRRRRK+QQ      L+++ KSQL+
Sbjct: 212 LLSEFDNGKRSCRKRLADHNRRRRKNQQ----ANLENSNKSQLD 251

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329284|ref|NP_683267.1| squamosa promoter-binding-like protein 8 [Arabidopsis thaliana] gi|67461535|sp|Q8GXL3.2|SPL8_ARATH RecName: Full=Squamosa promoter-binding-like protein 8 gi|5931679|emb|CAB56593.1| squamosa promoter binding protein-like 8 [Arabidopsis thaliana] gi|5931681|emb|CAB56594.1| squamosa promoter binding protein-like 8 [Arabidopsis thaliana] gi|332189253|gb|AEE27374.1| squamosa promoter-binding-like protein 8 [Arabidopsis thaliana]

 Score =  263 bits (673), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 159/303 (52%), Positives = 190/303 (62%), Gaps = 50/303 (16%)

Query: 1   MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLY 60
           M+DYEW NPS+I+L+GDE   + + +R  F  +   +P S +   NN++ H  I+   L 
Sbjct: 1   MLDYEWDNPSSIVLSGDERNPDSDPTRSSFSFF---DPISHY---NNDHRHITISPPLLS 54

Query: 61  HHHHQQQQPPPPPPPPHHHHHHNNNNNNSNN--------AHSLFDPRAYTS-ASSYAPTH 111
              +QQQQ          HH       NSNN         HSL+     T+   +  P +
Sbjct: 55  SFSNQQQQ----------HHLTLYGQTNSNNQFLHHHHHHHSLYGSTTTTTPYGASDPIY 104

Query: 112 H--------SMLSIDAASGGY-------FMIPKTEEVSRPVDNFASRIGLNLGGRTYFSS 156
           H        S+ S D    G        F+IPKTE     VD  ++RIGLNLGGRTYFS+
Sbjct: 105 HPHSSAPPASLFSYDQTGPGSGSGSSYNFLIPKTE-----VDFTSNRIGLNLGGRTYFSA 159

Query: 157 ADDDFVSRLYRRPRPGEAGSAN---IPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTV 213
           ADDDFVSRLYRR RPGE+G AN    PRCQAEGC+ADL+HAKHYHRRHKVCEFHSKASTV
Sbjct: 160 ADDDFVSRLYRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTV 219

Query: 214 IAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQKSQL 273
           +AAGL+QRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK  Q  + T  QD    + 
Sbjct: 220 VAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASAT--QDTGTGKT 277

Query: 274 EPE 276
            P+
Sbjct: 278 TPK 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.925	0.783	0.511	6.7e-65
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.404	0.110	0.572	2.9e-30
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.414	0.288	0.553	3.4e-29
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.464	0.349	0.496	4.4e-29
TAIR|locus:2011706	988	AT1G76580 [Arabidopsis thalian	0.393	0.112	0.534	1e-28
TAIR|locus:2095793	354	SPL15 "squamosa promoter bindi	0.446	0.355	0.526	5e-28
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.446	0.135	0.485	8.2e-28
TAIR|locus:2016014	396	SPL10 "squamosa promoter bindi	0.496	0.353	0.428	1.3e-27
TAIR|locus:2041329	881	SPL1 "squamosa promoter bindin	0.326	0.104	0.606	1.6e-27
TAIR|locus:2009675	174	SPL4 "squamosa promoter bindin	0.319	0.517	0.617	4.5e-27

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 151/295 (51%), Positives = 182/295 (61%)

Query:     1 MVDYEWGNPSTILLTGDEATQEPNQSRQIFDHYTTQEPFSQHSTNNNNYFHQPITNTTLY 60
             M+DYEW NPS+I+L+GDE   + + +R  F  +   +P S +   NN+  H+ IT +   
Sbjct:     1 MLDYEWDNPSSIVLSGDERNPDSDPTRSSFSFF---DPISHY---NND--HRHITISPPL 52

Query:    61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHSLFDPRAYTSASSYA-PTHH------- 112
                                             HSL+     T+    + P +H       
Sbjct:    53 LSSFSNQQQQHHLTLYGQTNSNNQFLHHHHHHHSLYGSTTTTTPYGASDPIYHPHSSAPP 112

Query:   113 -SMLSID-----AASGG-Y-FMIPKTEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSR 164
              S+ S D     + SG  Y F+IPKTE     VD  ++RIGLNLGGRTYFS+ADDDFVSR
Sbjct:   113 ASLFSYDQTGPGSGSGSSYNFLIPKTE-----VDFTSNRIGLNLGGRTYFSAADDDFVSR 167

Query:   165 LYRRPRPGEAGSAN---IPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQR 221
             LYRR RPGE+G AN    PRCQAEGC+ADL+HAKHYHRRHKVCEFHSKASTV+AAGL+QR
Sbjct:   168 LYRRSRPGESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQR 227

Query:   222 FCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPLQDNQKSQLEPE 276
             FCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK  Q  + T  QD    +  P+
Sbjct:   228 FCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASAT--QDTGTGKTTPK 280

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
 Identities = 67/117 (57%), Positives = 78/117 (66%)

Query:   144 IGLNLG-GRTYFSSADDDFVS-RLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHYHRRH 201
             + LNLG G T          + R  ++ R G  G  N P CQ + C+ DL+HAK YHRRH
Sbjct:    81 LDLNLGSGLTAVEETTTTTQNVRPNKKVRSGSPGG-NYPMCQVDNCTEDLSHAKDYHRRH 139

Query:   202 KVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 258
             KVCE HSKA+  +     QRFCQQCSRFHLLSEFD GKRSCR+RLA HNRRRRK+ Q
Sbjct:   140 KVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQ 196

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 72/130 (55%), Positives = 86/130 (66%)

Query:   130 TEEVSRPVDNFASRIGLNLGGRTYFSSADDDFVSRLYRRP----RPGEAGSANIPRCQAE 185
             ++E++R +D F  R  L+LG      + DDD  SR +  P    R     S N P CQ  
Sbjct:    77 SQELNR-ID-FKLRSFLDLG------NDDDDTSSRGFALPSKKSRASNLCSQN-PLCQVY 127

Query:   186 GCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKR 245
             GCS DL+ +K YH+RH+VCE HSK S VI  GL QRFCQQCSRFH LSEFD+GKRSCR+R
Sbjct:   128 GCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRR 187

Query:   246 LADHNRRRRK 255
             LA HN RRRK
Sbjct:   188 LAGHNERRRK 197

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 69/139 (49%), Positives = 83/139 (59%)

Query:   145 GLNLGGRTYFS-----SADDDFVSRLYRRPRPGEAG-SANIPRCQAEGCSADLTHAKHYH 198
             GL  G + YF      S       R  RR R G +G S  IPRCQ EGC  DLT+AK Y+
Sbjct:    31 GLMFGQKIYFEDGGGGSGSSSSGGRSNRRVRGGGSGQSGQIPRCQVEGCGMDLTNAKGYY 90

Query:   199 RRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 258
              RH+VC  HSK   V  AG+ QRFCQQCSRFH L EFD  KRSCR+RLA HN RRRK Q 
Sbjct:    91 SRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRKPQ- 149

Query:   259 QPTTTPLQDNQKSQLEPEI 277
              P +  +  ++  ++ P +
Sbjct:   150 -PASLSVLASRYGRIAPSL 167

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.0e-28, P = 1.0e-28
 Identities = 62/116 (53%), Positives = 76/116 (65%)

Query:   169 PRPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSR 228
             P  G  G  N P+CQ + C  DL+ AK YHRRHKVCE HSKA+  +     QRFCQQCSR
Sbjct:    69 PGSGGGGGGNYPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSR 128

Query:   229 FHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTPL-----QDNQKSQLEPEILA 279
             FHLLSEFD GKRSCR+RL  HNRRRRK+Q    T+ +     +DN  +    +++A
Sbjct:   129 FHLLSEFDEGKRSCRRRLDGHNRRRRKTQPDAITSQVVALENRDNTSNNTNMDVMA 184

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2095793 SPL15 "squamosa promoter binding protein-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 70/133 (52%), Positives = 82/133 (61%)

Query:   145 GLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHYHRRHKVC 204
             GL  G + YF   +D   SR   R       S    RCQ EGC  DL++ K Y+ RHKVC
Sbjct:    26 GLRFGQKIYF---EDGSGSRSKNRVNTVRKSSTTA-RCQVEGCRMDLSNVKAYYSRHKVC 81

Query:   205 EFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPTTTP 264
               HSK+S VI +GL QRFCQQCSRFH LSEFD  KRSCR+RLA HN RRRK Q  PTT  
Sbjct:    82 CIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERRRKPQ--PTTA- 138

Query:   265 LQDNQKSQLEPEI 277
             L  +  S++ P +
Sbjct:   139 LFTSHYSRIAPSL 151

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0008361 "regulation of cell size" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 66/136 (48%), Positives = 87/136 (63%)

Query:   138 DNFASRIGLNLGGRTYFSSADDDFVSRLYRRPRPGEAGSANIPRCQAEGCSADLTHAKHY 197
             D+ A R+ LNLGG    ++ + + V    ++ + G    +    CQ + C ADL+  K Y
Sbjct:    91 DDDAHRLTLNLGG----NNIEGNGV----KKTKLGGGIPSRAICCQVDNCGADLSKVKDY 142

Query:   198 HRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQ 257
             HRRHKVCE HSKA+T +  G+ QRFCQQCSRFH+L EFD GKRSCR+RLA HN+RRRK+ 
Sbjct:   143 HRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKAN 202

Query:   258 QQP--TTTPLQDNQKS 271
                    T + D+Q S
Sbjct:   203 PDTIGNGTSMSDDQTS 218

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 66/154 (42%), Positives = 92/154 (59%)

Query:   118 DAASG-GYFMIPKTEEVSRPVDNFASRIGLNLGGRTY---FSSADDDFVSRL-------- 165
             D++S   +  +  +  +  P+ +  S + L LG RTY   F   +++ +S +        
Sbjct:    98 DSSSNIDFLQVKPSTALEVPIASAESDLCLKLGKRTYSEEFWGRNNNDLSAVSMNLLTPS 157

Query:   166 -YRRPRPGEAG-SANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFC 223
                R +    G S  +PRCQ +GC  DL+ +K YHR+H+VCE HSK   V+ +GL +RFC
Sbjct:   158 VVARKKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFC 217

Query:   224 QQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQ 257
             QQCSRFH +SEFD  KRSCRKRL+ HN RRRK Q
Sbjct:   218 QQCSRFHAVSEFDEKKRSCRKRLSHHNARRRKPQ 251

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010358 "leaf shaping" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.6e-27, P = 1.6e-27
 Identities = 57/94 (60%), Positives = 67/94 (71%)

Query:   182 CQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRS 241
             CQ E C ADL+  K YHRRHKVCE HSKA++    G+ QRFCQQCSRFHLL EFD GKRS
Sbjct:   106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRS 165

Query:   242 CRKRLADHNRRRRKSQQQPTTT--PLQDNQKSQL 273
             CR+RLA HN+RRRK+  +P     P  D+  + L
Sbjct:   166 CRRRLAGHNKRRRKTNPEPGANGNPSDDHSSNYL 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 58/94 (61%), Positives = 67/94 (71%)

Query:   172 GEAGSAN----IPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCS 227
             G  GS N    +  CQ + C+AD+  AK YHRRHKVCE H+KAS+V  +GL QRFCQQCS
Sbjct:    40 GSRGSINRGGSLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCS 99

Query:   228 RFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQPT 261
             RFH L EFD  KRSCR+RLA HN RRRKS  + T
Sbjct:   100 RFHDLQEFDEAKRSCRRRLAGHNERRRKSSGEST 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXL3	SPL8_ARATH	No assigned EC number	0.5247	0.8971	0.7597	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019158001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (304 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
pfam03110	79	pfam03110, SBP, SBP domain	3e-51

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  162 bits (412), Expect = 3e-51
 Identities = 60/79 (75%), Positives = 65/79 (82%)

Query: 181 RCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKR 240
           RCQ EGC ADL++AK YHRRHKVCE HSKA  V+ +GL QRFCQQCSRFHLLSEFD GKR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 241 SCRKRLADHNRRRRKSQQQ 259
           SCR+RLA HN RRRK Q  
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=6.4e-41  Score=259.62  Aligned_cols=78  Identities=68%  Similarity=1.193  Sum_probs=63.2

Q ss_pred             CcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccccccchHHHHHHHHHHHhhccCC
Q 023467          181 RCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ  258 (282)
Q Consensus       181 ~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~q~  258 (282)
                      +||||||++||+.+|.||+||||||.|+||++|+++|+.+||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		1e-27
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		2e-19
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		7e-19

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 65/84 (77%)
Query: 172 GEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHL 231
           G +GS+ +  CQ + C+AD+  AK YHRRHKVCE H+KAS+V  +GL QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60
Query: 232 LSEFDNGKRSCRKRLADHNRRRRK 255
           L EFD  KRSCR+RLA HN RRRK
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRK 84

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 55/79 (69%)
Query: 177 ANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236
            ++ RCQ   C AD++  K YH+RH+VC   + AS V+  G  +R+CQQC +FHLL +FD
Sbjct: 1   GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFD 60
Query: 237 NGKRSCRKRLADHNRRRRK 255
            GKRSCR++L  HN RR++
Sbjct: 61  EGKRSCRRKLERHNNRRKR 79

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/55 (67%), Positives = 43/55 (78%)
Query: 182 CQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236
           CQ + C ADL+  K YHRRHKVCE HSKA+T +  G+ QRFCQQCSRFH+L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	7e-37
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	7e-35
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	5e-31

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  125 bits (315), Expect = 7e-37
 Identities = 56/88 (63%), Positives = 67/88 (76%)

Query: 172 GEAGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHL 231
           G +GS+ +  CQ + C+AD+  AK YHRRHKVCE H+KAS+V  +GL QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 232 LSEFDNGKRSCRKRLADHNRRRRKSQQQ 259
           L EFD  KRSCR+RLA HN RRRKS  +
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRKSSGE 88

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  120 bits (301), Expect = 7e-35
 Identities = 39/87 (44%), Positives = 55/87 (63%)

Query: 177 ANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236
            ++ RCQ   C AD++  K YH+RH+VC   + AS V+  G  +R+CQQC +FHLL +FD
Sbjct: 1   GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFD 60

Query: 237 NGKRSCRKRLADHNRRRRKSQQQPTTT 263
            GKRSCR++L  HN RR++        
Sbjct: 61  EGKRSCRRKLERHNNRRKRKPVDKGGV 87

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  109 bits (274), Expect = 5e-31
 Identities = 37/57 (64%), Positives = 43/57 (75%)

Query: 180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236
             CQ + C ADL+  K YHRRHKVCE HSKA+T +  G+ QRFCQQCSRFH+L EFD
Sbjct: 4   ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.97

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=6.4e-44  Score=283.36  Aligned_cols=88  Identities=63%  Similarity=1.085  Sum_probs=80.3

Q ss_pred             CCCCCCCCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccccccchHHHHHHHHHHHh
Q 023467          174 AGSANIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRR  253 (282)
Q Consensus       174 ~g~~~~p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RR  253 (282)
                      +|+++.++||||||++||+.+|.||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus         3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR   82 (94)
T 1ul4_A            3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR   82 (94)
T ss_dssp             -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred             CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence            45578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCC
Q 023467          254 RKSQQQPT  261 (282)
Q Consensus       254 RK~q~~A~  261 (282)
                      ||+++++.
T Consensus        83 Rk~~~~~~   90 (94)
T 1ul4_A           83 RKSSGESG   90 (94)
T ss_dssp             CSCCCC--
T ss_pred             ccCCCCcC
Confidence            99998864

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=4.8e-43  Score=275.46  Aligned_cols=84  Identities=46%  Similarity=0.957  Sum_probs=79.7

Q ss_pred             CCCCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccccccchHHHHHHHHHHHhhccC
Q 023467          178 NIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQ  257 (282)
Q Consensus       178 ~~p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~q  257 (282)
                      +.++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+.
T Consensus         2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~   81 (88)
T 1ul5_A            2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP   81 (88)
T ss_dssp             -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred             CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCC
Q 023467          258 QQPT  261 (282)
Q Consensus       258 ~~A~  261 (282)
                      ++..
T Consensus        82 ~~~~   85 (88)
T 1ul5_A           82 VDKG   85 (88)
T ss_dssp             CSSC
T ss_pred             ccCC
Confidence            7654

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.97  E-value=3.5e-33  Score=206.31  Aligned_cols=59  Identities=63%  Similarity=1.171  Sum_probs=57.2

Q ss_pred             CCCCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccc
Q 023467          178 NIPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD  236 (282)
Q Consensus       178 ~~p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFD  236 (282)
                      +.++||||||++||+.+|+|||||||||.|+||++|+|+|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            56899999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	1e-42
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	1e-40
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	3e-29

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  138 bits (350), Expect = 1e-42
 Identities = 39/81 (48%), Positives = 54/81 (66%)

Query: 179 IPRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNG 238
           + RCQ   C AD++  K YH+RH+VC   + AS V+  G  +R+CQQC +FHLL +FD G
Sbjct: 1   VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEG 60

Query: 239 KRSCRKRLADHNRRRRKSQQQ 259
           KRSCR++L  HN RR++    
Sbjct: 61  KRSCRRKLERHNNRRKRKPVD 81

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  133 bits (337), Expect = 1e-40
 Identities = 53/78 (67%), Positives = 61/78 (78%)

Query: 182 CQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRS 241
           CQ + C+AD+  AK YHRRHKVCE H+KAS+V  +GL QRFCQQCSRFH L EFD  KRS
Sbjct: 4   CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 63

Query: 242 CRKRLADHNRRRRKSQQQ 259
           CR+RLA HN RRRKS  +
Sbjct: 64  CRRRLAGHNERRRKSSGE 81

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  103 bits (258), Expect = 3e-29
 Identities = 37/56 (66%), Positives = 43/56 (76%)

Query: 181 RCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD 236
            CQ + C ADL+  K YHRRHKVCE HSKA+T +  G+ QRFCQQCSRFH+L EFD
Sbjct: 3   CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.97

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.4e-43  Score=269.80  Aligned_cols=80  Identities=66%  Similarity=1.137  Sum_probs=78.1

Q ss_pred             CCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccccccchHHHHHHHHHHHhhccCCC
Q 023467          180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQ  259 (282)
Q Consensus       180 p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~q~~  259 (282)
                      .+||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||||||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999998874

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.5e-43  Score=271.37  Aligned_cols=82  Identities=48%  Similarity=0.964  Sum_probs=80.0

Q ss_pred             CCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccccccchHHHHHHHHHHHhhccCCC
Q 023467          180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQQ  259 (282)
Q Consensus       180 p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCRrrLarHN~RRRK~q~~  259 (282)
                      ++||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (86)
T d1ul5a_           2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD   81 (86)
T ss_dssp             CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred             CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CC
Q 023467          260 PT  261 (282)
Q Consensus       260 A~  261 (282)
                      +.
T Consensus        82 ~~   83 (86)
T d1ul5a_          82 KG   83 (86)
T ss_dssp             SC
T ss_pred             cc
Confidence            64

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=3.3e-33  Score=204.20  Aligned_cols=57  Identities=65%  Similarity=1.211  Sum_probs=55.9

Q ss_pred             CCcccCCCchhhccchhhhhhccchhhhccCcEEeECCchhhhhhhhccCccccccc
Q 023467          180 PRCQAEGCSADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFD  236 (282)
Q Consensus       180 p~CQVeGC~aDLs~aK~YhRRhRVCE~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFD  236 (282)
                      .+||||||++||+.+|+|||||||||.|+||++|+|+|++|||||||||||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            469999999999999999999999999999999999999999999999999999998