Citrus Sinensis ID: 023481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-
Protein Sequence
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccccHHHHHccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccEccccccccccHcHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccEcccccccccccccccccccccHHHccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHcHHHHHHHHHHHHHHHHHHccccccEccccccc
Coil and Loop (DISEMBL)
MAQTMLLMSgvstshagnlkrdSLVTFqtqmlrpkpfshlmfnplsneSLTAAAASSSSKAFSTVALFksktkappktkkveskpkvedgifgtsggfgftkqneLFVGRVAMIGFAASLlgegitgkgILAQLNletgipiyeaePLLLFFILFTLLGAIgalgdrgkfvdepdeptglggavippgkglrsalglkeggpifgftksneLFVGRLAQLGIAFSLIGEIItgkgalaqlnietgipineieplvLFNVIFFFVAalnpgtgkfvtdedee
Flexible Loop (DISEMBL)
MAQTMLLMSgvstshagnlkRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVAlfksktkappktkkveskpkvedgifgtsggfgFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTglggavippgKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGtgkfvtdedee
Low Complexity Region (SEG)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEsltaaaasssskafstvalFksktkappktkkVESKPKVEDgifgtsggfgftKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPlllffilftllGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE
Disordered region (IsUnstruct)
*****************************************************************************************GIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD*******LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKF*******
Disordered Region (DISOPRED)
***T****************************************************************************************GTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD************************LKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTG*********
Disordered Region (DISEMBL)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNES*************STVALFKS**************PKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE
Disordered Region (DISPRO)
********SGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNP**************SKAFSTVALFKSKTK***********PKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	281	2.2.26 [Sep-21-2011]
Q02060	274	Photosystem II 22 kDa pro	N/A	no	0.960	0.985	0.742	2e-97
Q9SMB4	274	Photosystem II 22 kDa pro	N/A	no	0.975	1.0	0.729	1e-89
Q9XF91	265	Photosystem II 22 kDa pro	yes	no	0.935	0.992	0.730	2e-87
P54773	276	Photosystem II 22 kDa pro	N/A	no	0.957	0.974	0.718	9e-83
Q9FPP4	276	Photosystem II 22 kDa pro	N/A	no	0.957	0.974	0.708	1e-81

>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1

 Score =  355 bits (912), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 211/284 (74%), Positives = 237/284 (83%), Gaps = 14/284 (4%)

Query: 1   MAQTMLLM-SGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSS 59
           MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK       +  SN   +   +SSSS
Sbjct: 1   MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPK-------SSTSNLFFSPLPSSSSS 53

Query: 60  K--AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
               F T+ALFKSK KAP K +K   K KVEDG+FGTSGG GFTK+NELFVGRVAMIGFA
Sbjct: 54  SSTVFKTLALFKSKAKAPKKVEK--PKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFA 111

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGEGITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP   
Sbjct: 112 ASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPT-- 169

Query: 178 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237
           TGL  AVIPPGK +RSALGLK  GP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGAL
Sbjct: 170 TGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGAL 229

Query: 238 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           AQLNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKF+TD++EE
Sbjct: 230 AQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.
Spinacia oleracea (taxid: 3562)

>sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1

 Score =  329 bits (844), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 205/281 (72%), Positives = 229/281 (81%), Gaps = 7/281 (2%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S      L  +  +A+A++SS  
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHF 53

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
             +TVALFKSK KAP K    + K KVEDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54  TSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGAL DRGKF+D+P  PTGL
Sbjct: 114 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGL 173

Query: 181 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 240
             AVIPPGKG +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS+IGEIITGKGALAQL
Sbjct: 174 DKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 233

Query: 241 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           N ETG+PINEIEPL+LFN++FFFVAA+NPGTGKFVTDE+EE
Sbjct: 234 NFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Nicotiana tabacum (taxid: 4097)

>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1

 Score =  322 bits (825), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 206/282 (73%), Positives = 225/282 (79%), Gaps = 19/282 (6%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL SGV+  H         +  ++ + +PK   H +F  LS  S    A  S  +
Sbjct: 1   MAQTMLLTSGVTAGH--------FLRNKSPLAQPK--VHHLF--LSGNS--PVALPSRRQ 46

Query: 61  AFSTVALFKSKTKAPPKTKKVES-KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
           +F  +ALFK KTKA    KKVE  K KVEDGIFGTSGG GFTK NELFVGRVAMIGFAAS
Sbjct: 47  SFVPLALFKPKTKA--APKKVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAAS 104

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           LLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P  PTG
Sbjct: 105 LLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTG 162

Query: 180 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 239
           L  AVIPPGK +RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQ
Sbjct: 163 LEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQ 222

Query: 240 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           LNIETGIPI +IEPLVL NV FFF AA+NPG GKF+TD+ EE
Sbjct: 223 LNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Arabidopsis thaliana (taxid: 3702)

>sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1

 Score =  306 bits (785), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 207/288 (71%), Positives = 229/288 (79%), Gaps = 19/288 (6%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S L    L     +++  +SSSK
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSK 53

Query: 61  AFST-VALFKSKTK------APPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAM 113
             ST VALFKSK K      APPK K+     KVEDGIFGTSGG GFTKQNELFVGRVAM
Sbjct: 54  FTSTTVALFKSKAKAPPKKVAPPKEKQ-----KVEDGIFGTSGGIGFTKQNELFVGRVAM 108

Query: 114 IGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE 173
           IGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRGKFVD+
Sbjct: 109 IGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDD 168

Query: 174 PDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG 233
           P  PTGL  AVIPPGK  +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITG
Sbjct: 169 PTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITG 228

Query: 234 KGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           KGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 229 KGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Solanum lycopersicum (taxid: 4081)

>sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 204/288 (70%), Positives = 226/288 (78%), Gaps = 19/288 (6%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLL +           ++SLV    + L+PKP S L    L     ++    SSSK
Sbjct: 1   MAQTMLLTANAKVDLR---SKESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSK 53

Query: 61  AFST-VALFKSKTK------APPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAM 113
             ST VALFKSK K      APPK K+     KVEDGIFGTSGG GFTKQNELFVGRVAM
Sbjct: 54  FTSTTVALFKSKAKAPPKKVAPPKEKQ-----KVEDGIFGTSGGIGFTKQNELFVGRVAM 108

Query: 114 IGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE 173
           IGFAASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILF LLGAIGALGDRG+F+D+
Sbjct: 109 IGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDD 168

Query: 174 PDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG 233
           P   TGL  AVIPPGK  +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS+IGEIITG
Sbjct: 169 PAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITG 228

Query: 234 KGALAQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           KGALAQLN ETG+PINEIEPL+LFN+ FFF AA+NPGTGKF+TDE+E+
Sbjct: 229 KGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Solanum sogarandinum (taxid: 52705)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
255545402	275	Photosystem II 22 kDa protein, chloropla	0.978	1.0	0.811	1e-108
224063082	272	hypothetical protein POPTRDRAFT_816277 [	0.967	1.0	0.804	1e-107
357463499	270	Photosystem II 22 kDa protein [Medicago	0.960	1.0	0.768	1e-105
388510160	273	unknown [Lotus japonicus]	0.967	0.996	0.804	1e-105
188509922	277	putative photosystem II protein [Gossypi	0.975	0.989	0.823	1e-105
133902325	278	putative photosystem II protein [Gossypi	0.975	0.985	0.820	1e-101
225459564	270	PREDICTED: photosystem II 22 kDa protein	0.960	1.0	0.761	1e-100
449465453	272	PREDICTED: photosystem II 22 kDa protein	0.950	0.981	0.758	1e-100
217072844	262	unknown [Medicago truncatula]	0.921	0.988	0.770	1e-99
356509413	273	PREDICTED: photosystem II 22 kDa protein	0.964	0.992	0.776	2e-97

>gi|255545402|ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis] gi|223546847|gb|EEF48344.1| Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/281 (81%), Positives = 248/281 (88%), Gaps = 6/281 (2%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTML MSGVST H  +LKRD L+ FQ   LRPKPFS L+F+PL     T +++ + SK
Sbjct: 1   MAQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPKPFSSLLFSPLP----TNSSSFAPSK 56

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T ALFKSK KA PK   V+ K KVEDG+FGTSGG GFTKQNELFVGRVAM+GFAASL
Sbjct: 57  TFTTFALFKSKAKAAPKKTVVKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASL 116

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGEG+TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+P  PTG+
Sbjct: 117 LGEGLTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGI 174

Query: 181 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 240
            GAVIPPGKG R+ALGLKEGGP+FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL
Sbjct: 175 EGAVIPPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 234

Query: 241 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           NIETGIP+NEIEPLVLFNVIFFF AALNPGTGKFVTDE++E
Sbjct: 235 NIETGIPVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEEDE 275

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063082|ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa] gi|118488707|gb|ABK96164.1| unknown [Populus trichocarpa] gi|222842713|gb|EEE80260.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/281 (80%), Positives = 246/281 (87%), Gaps = 9/281 (3%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTM+LMSGVST    +LKRD L+ FQ Q LRP PFS L++NPL +++       SSS 
Sbjct: 1   MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNPLPSKA-------SSSN 53

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
           AF+T+ALFK +TKA PK      KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFAASL
Sbjct: 54  AFTTLALFKPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGIL+QLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+P   TG+
Sbjct: 114 LGEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPT--TGI 171

Query: 181 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 240
            GAVIPPGK  R+ALGLKEGGP+FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL
Sbjct: 172 EGAVIPPGKSFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 231

Query: 241 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           NIETGIP+NEIEPLVLFNV+FFF+AALNPGTGKFVTDEDEE
Sbjct: 232 NIETGIPVNEIEPLVLFNVLFFFIAALNPGTGKFVTDEDEE 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463499|ref|XP_003602031.1| Photosystem II 22 kDa protein [Medicago truncatula] gi|355491079|gb|AES72282.1| Photosystem II 22 kDa protein [Medicago truncatula] gi|388508062|gb|AFK42097.1| unknown [Medicago truncatula]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/281 (76%), Positives = 238/281 (84%), Gaps = 11/281 (3%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLLMS VS++++ +LK+D L+  Q Q LRP+ FS + FNPL + S        SS+
Sbjct: 1   MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPR-FSDVSFNPLPSNS-----KCFSSR 54

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T+ALFKSKTKAP K  K     KVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS+
Sbjct: 55  TFTTLALFKSKTKAPAKVVKKPKP-KVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASI 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE +TGKGILAQLNLETGIPIYEAEPLLLFFI+FTLLGAIGALGDRGKFVD  DEP   
Sbjct: 114 LGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVD--DEPNT- 170

Query: 181 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 240
            G VIPPGKG RSALGL EGGP+FGFTKSNELFVGRLAQLG  FSLIGEIITGKGALAQL
Sbjct: 171 -GGVIPPGKGFRSALGLSEGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQL 229

Query: 241 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           NIETG+PI EIEPLVLFNVIFFF+AALNPGTG FVTD++E+
Sbjct: 230 NIETGVPITEIEPLVLFNVIFFFIAALNPGTGTFVTDDEED 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510160|gb|AFK43146.1| unknown [Lotus japonicus]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/282 (80%), Positives = 247/282 (87%), Gaps = 10/282 (3%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPL-SNESLTAAAASSSS 59
           MAQTMLLMS VS+S++ +LK+D L+  Q+Q LRPK FS L FNPL SN SL       SS
Sbjct: 1   MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPK-FSQLSFNPLPSNSSLF------SS 53

Query: 60  KAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
           + F+T+ALFKSK KAPP  K V+ KPKVEDG+FGTSGG GFTKQNELFVGRVAMIGFAAS
Sbjct: 54  RTFTTLALFKSKAKAPP-PKVVKQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAAS 112

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           LLGE +TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD+ + PTG
Sbjct: 113 LLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD-ESPTG 171

Query: 180 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 239
           L  AVIPPGKGLR ALGL EGGP+FGFTKSNELFVGRLAQLG AFSLIGEIITGKGALAQ
Sbjct: 172 LDKAVIPPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQ 231

Query: 240 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           LNIETGIPINEIEPLVLFNV FFF+AALNPGTGKFV+D+ E+
Sbjct: 232 LNIETGIPINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGED 273

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509922|gb|ACD56611.1| putative photosystem II protein [Gossypioides kirkii]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/284 (82%), Positives = 252/284 (88%), Gaps = 10/284 (3%)

Query: 1   MAQTMLLMSG--VSTSHAGNLKRDS-LVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
           MAQTML+MS   VS SH  NLKRD  L+ FQ Q L+PKPFSH +FNPLSN     A A+S
Sbjct: 1   MAQTMLVMSSTSVSASHVVNLKRDHPLLHFQAQGLKPKPFSHFLFNPLSN-----AVAAS 55

Query: 58  SSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
           SSKAF+T ALFKSKTKA PK  + + KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56  SSKAFTTFALFKSKTKAAPKKAEPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVDEP  P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--P 173

Query: 178 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237
           TG+ GAVIPPGKG+R ALGLKEGGP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGAL
Sbjct: 174 TGVEGAVIPPGKGVRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGAL 233

Query: 238 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           AQLNIETGIPI++IEPLVLFNV FFF AA+NPGTGKFVTDE+E+
Sbjct: 234 AQLNIETGIPISDIEPLVLFNVAFFFAAAINPGTGKFVTDEEED 277

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902325|gb|ABO41853.1| putative photosystem II protein [Gossypium hirsutum]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/284 (82%), Positives = 248/284 (87%), Gaps = 10/284 (3%)

Query: 1   MAQTMLLMSG--VSTSHAGNLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASS 57
           MAQTML+MS   VSTSH  NLKRD +L+ FQ Q L+PKP SH +FNP SN       A+S
Sbjct: 1   MAQTMLVMSSTRVSTSHVVNLKRDHTLLHFQAQGLKPKPSSHFLFNPHSN-----TVAAS 55

Query: 58  SSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA 117
           SSKAF+T ALFK KTKA PK    + KPKVEDGIFGTSGG GFTKQNELFVGRVAMIGFA
Sbjct: 56  SSKAFTTFALFKPKTKAAPKKAAPKPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFA 115

Query: 118 ASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEP 177
           ASLLGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP  P
Sbjct: 116 ASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP--P 173

Query: 178 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL 237
           TG+ GAVIPPGKG+R ALGLKEGGP+FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGAL
Sbjct: 174 TGIEGAVIPPGKGIRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGAL 233

Query: 238 AQLNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           AQLNIETGIPI++IEPLVLFNV FFF AA+NPGTGKFVTDE EE
Sbjct: 234 AQLNIETGIPISDIEPLVLFNVAFFFFAAINPGTGKFVTDEAEE 277

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459564|ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic [Vitis vinifera] gi|302141814|emb|CBI19017.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/281 (76%), Positives = 238/281 (84%), Gaps = 11/281 (3%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTML+   VS     +LKR  L+    Q LRPKPFSH              ++S+SS 
Sbjct: 1   MAQTMLITPSVSGHSVLDLKRQPLL----QRLRPKPFSH------LLLPPLPTSSSTSSP 50

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
           AF+T+ALFKSKTKA P  K  + KP+VEDGIFGTSGG GFTK+NELFVGRVAM+GFAASL
Sbjct: 51  AFTTLALFKSKTKAAPSKKVTKPKPQVEDGIFGTSGGIGFTKKNELFVGRVAMLGFAASL 110

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG+FVD+ D PTG+
Sbjct: 111 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDD-DPPTGI 169

Query: 181 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 240
            GAVIPPGKGLRSALGL+EGGP+FGFTKSNELFVGRLAQLGI FS+IGEIITGKGALAQL
Sbjct: 170 EGAVIPPGKGLRSALGLREGGPLFGFTKSNELFVGRLAQLGIVFSIIGEIITGKGALAQL 229

Query: 241 NIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           NIETG+PI++IEPLVLFNVIFFF AALNPG+GKFVTD++EE
Sbjct: 230 NIETGVPISDIEPLVLFNVIFFFFAALNPGSGKFVTDDEEE 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465453|ref|XP_004150442.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Cucumis sativus] gi|449529497|ref|XP_004171736.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Cucumis sativus]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/282 (75%), Positives = 236/282 (83%), Gaps = 15/282 (5%)

Query: 2   AQTMLLMSGVSTSHAGNLKRD-SLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           AQTMLL SGV   H   LKR+ SL    TQ      F+ L FNPL + S+     S   +
Sbjct: 3   AQTMLLTSGVCVGHGVCLKRELSLRPNYTQ------FTRLFFNPLPSHSV-----SLPPR 51

Query: 61  AFSTVALFKSKTKAPPKTKKVES-KPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
            F+T+A+FKS+TKAPPK  KVE  K KVEDGIFGTSGG GFTKQNELFVGRVAMIGFAAS
Sbjct: 52  GFTTLAVFKSRTKAPPK--KVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS 109

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           +LGE ITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF+D+P+  TG
Sbjct: 110 ILGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATG 169

Query: 180 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 239
           L  AVIPPGK  RSALGLKEGGP+FGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQ
Sbjct: 170 LERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQ 229

Query: 240 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           LNIETG+PINEIEPLVL NV+FFF+AA+NPGTGKFVTDE+++
Sbjct: 230 LNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072844|gb|ACJ84782.1| unknown [Medicago truncatula]

 Score =  369 bits (946), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 208/270 (77%), Positives = 227/270 (84%), Gaps = 11/270 (4%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLLMS VS++++ +LK+D L+  Q Q LRP+ FS + FNPL + S        SS+
Sbjct: 1   MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPR-FSDVSFNPLPSNS-----KCFSSR 54

Query: 61  AFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASL 120
            F+T+ALFKSKTKAP K  K     KVEDGIFGTS GFGFTKQNELFVGRVAMIGFAAS+
Sbjct: 55  TFTTLALFKSKTKAPAKVVKKPKP-KVEDGIFGTSRGFGFTKQNELFVGRVAMIGFAASI 113

Query: 121 LGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGL 180
           LGE +TGKGILAQLNLETGIPIYEAEPLLLFFI+FTLLGAIGALGDRGKFVD  DEP   
Sbjct: 114 LGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVD--DEPN-- 169

Query: 181 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 240
            G VIPPGKG RSALGL EGGP+FGFTKSNELFVGRLAQLG  FSLIGEIITGKGALAQL
Sbjct: 170 TGGVIPPGKGFRSALGLSEGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQL 229

Query: 241 NIETGIPINEIEPLVLFNVIFFFVAALNPG 270
           NIETG+PI EIEPLVLFNVIFFF+AALNPG
Sbjct: 230 NIETGVPITEIEPLVLFNVIFFFIAALNPG 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509413|ref|XP_003523444.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic-like [Glycine max]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 219/282 (77%), Positives = 242/282 (85%), Gaps = 11/282 (3%)

Query: 1   MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSK 60
           MAQTMLLMS VS+S++ +LK+D  +  Q+Q LRPK FS L FNPL     ++ ++ SS +
Sbjct: 1   MAQTMLLMSSVSSSYSVDLKKDLFLQLQSQSLRPK-FSQLSFNPLP----SSTSSFSSPR 55

Query: 61  AFSTVALFKSKTKAPP-KTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAAS 119
            F+T+ALFKSKTKA P KTK  + K KVEDGIFGTSGGFGFTKQNELFVGRVAM+GFAAS
Sbjct: 56  TFTTLALFKSKTKAAPAKTKVTKPKQKVEDGIFGTSGGFGFTKQNELFVGRVAMLGFAAS 115

Query: 120 LLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG 179
           LLGEGITGKGILAQLNLETGIP+YEAEPLLLFFILFTLLGAIG LGDRGKFVD  DEPT 
Sbjct: 116 LLGEGITGKGILAQLNLETGIPLYEAEPLLLFFILFTLLGAIGGLGDRGKFVD--DEPT- 172

Query: 180 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ 239
             G VIPPGKG R ALGL   GP+FGFTK+NELFVGRLAQLG  FSLIGEIITGKGALAQ
Sbjct: 173 -TGGVIPPGKGFREALGLGS-GPLFGFTKANELFVGRLAQLGFVFSLIGEIITGKGALAQ 230

Query: 240 LNIETGIPINEIEPLVLFNVIFFFVAALNPGTGKFVTDEDEE 281
           LNIETG+PINEIEPLVLFNV+FFF+AALNPGTGKFVTDE E+
Sbjct: 231 LNIETGVPINEIEPLVLFNVLFFFIAALNPGTGKFVTDEGED 272

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	281
TAIR|locus:2823639	265	NPQ4 "NONPHOTOCHEMICAL QUENCHI	0.697	0.739	0.762	6.6e-77

TAIR|locus:2823639 NPQ4 "NONPHOTOCHEMICAL QUENCHING 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
 Identities = 151/198 (76%), Positives = 160/198 (80%)

Query:    84 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIY 143
             K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIY
Sbjct:    69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIY 128

Query:   144 EAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPI 203
             EAEP           GAIGALGDRGKFVD+P  PTGL  AVIPPGK +RSALGLKE GP+
Sbjct:   129 EAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPL 186

Query:   204 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLVLFNVIFFF 263
             FGFTK+NELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI +IEPLVL NV FFF
Sbjct:   187 FGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFF 246

Query:   264 VAALNPGTGKFVTDEDEE 281
              AA+NPG GKF+TD+ EE
Sbjct:   247 FAAINPGNGKFITDDGEE 264

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009517 "PSII associated light-harvesting complex II" evidence=TAS

GO:0010196 "nonphotochemical quenching" evidence=IMP

GO:0016168 "chlorophyll binding" evidence=TAS

GO:0051738 "xanthophyll binding" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XF91	PSBS_ARATH	No assigned EC number	0.7304	0.9359	0.9924	yes	no
Q02060	PSBS_SPIOL	No assigned EC number	0.7429	0.9608	0.9854	N/A	no
P54773	PSBS_SOLLC	No assigned EC number	0.7187	0.9572	0.9746	N/A	no
Q9FPP4	PSBS_SOLSG	No assigned EC number	0.7083	0.9572	0.9746	N/A	no
Q9SMB4	PSBS_TOBAC	No assigned EC number	0.7295	0.9750	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II0752	SubName- Full=Putative uncharacterized protein; (272 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_III1082	SubName- Full=Putative uncharacterized protein; (144 aa)				•			•		0.554
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)				•			•		0.479
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)				•			•		0.474
	estExt_Genewise1_v1.C_LG_II4195	SubName- Full=Putative uncharacterized protein; (140 aa)				•			•		0.473
	Lil2	HLIP/One helix protein (109 aa)				•			•		0.462
	estExt_fgenesh4_pg.C_LG_VII0722	photosystem II stability/assembly factor (394 aa)				•			•		0.434
	estExt_fgenesh4_pg.C_LG_VI0422	SubName- Full=Putative uncharacterized protein; (1365 aa)				•			•		0.418
	eugene3.02080025	hypothetical protein (465 aa)				•					0.405

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	281
PLN00084	214	PLN00084, PLN00084, photosystem II subunit S (PsbS	3e-09
PLN00084	214	PLN00084, PLN00084, photosystem II subunit S (PsbS	1e-08
pfam00504	135	pfam00504, Chloroa_b-bind, Chlorophyll A-B binding	8e-06

>gnl|CDD|177707 PLN00084, PLN00084, photosystem II subunit S (PsbS); Provisional

 Score = 55.5 bits (133), Expect = 3e-09
 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 208 KSNELFVGRLAQLGIAFSLIGEIITGK-GALAQLNIETGIPINEIE---PLVLFNVIFFF 263
           K  ELF GRLA LG AF++ G+ +TG  G L Q N ETG+P+ + E      LF V F  
Sbjct: 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLFGVFFNV 195

Query: 264 VA 265
           VA
Sbjct: 196 VA 197

Length = 214

>gnl|CDD|177707 PLN00084, PLN00084, photosystem II subunit S (PsbS); Provisional

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 102 KQNELFVGRVAMIGFAASLLGEGITGK-GILAQLNLETGIPIYEAEPLLLFFIL 154
           K  ELF GR+AM+GFA ++ G+ +TG  G L Q N ETG+P+ + E    FF+ 
Sbjct: 136 KPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLF 189

Length = 214

>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 7/123 (5%)

Query: 103 QNELFVGRVAMIGFAASLLGEGITGKGILAQLNL--ETGIPIYEAEPLLLFFILFTLLGA 160
           + EL  GR AM+    +L+ E +T  G +A      E G P+  A P LL   +  L+G 
Sbjct: 11  EAELKHGRWAMLAVLGALVPELLTKLGGVAGEPAWFEAGGPLLPAIPTLLALQILLLMGF 70

Query: 161 IGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQL 220
           +     +G        P G GG    PG      LGL +    F   K  E+  GRLA +
Sbjct: 71  LELARWQGGK-----APGGEGGDPGYPGGFGFDPLGLAKDPETFAELKLKEIKNGRLAMI 125

Query: 221 GIA 223
              
Sbjct: 126 AFL 128

Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	281
PLN00187	286	photosystem II light-harvesting complex II protein	100.0
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	100.0
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	100.0
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	100.0
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	100.0
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	100.0
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	100.0
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.98
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.97
PLN00171	324	photosystem light-harvesting complex -chlorophyll	99.97
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.96
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.95
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	99.92
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	99.84
PLN00084	214	photosystem II subunit S (PsbS); Provisional	99.55
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	99.36
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	99.31
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	99.2
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	99.2
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	99.15
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	99.14
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	99.14
PLN00187	286	photosystem II light-harvesting complex II protein	99.13
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	99.12
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	99.08
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	99.08
PLN00171	324	photosystem light-harvesting complex -chlorophyll	99.06
PHA02337	35	putative high light inducible protein	99.04
PHA02337	35	putative high light inducible protein	98.99
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	98.99
PLN00084	214	photosystem II subunit S (PsbS); Provisional	98.97
PLN00014	250	light-harvesting-like protein 3; Provisional	98.6
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	98.54
PLN00014	250	light-harvesting-like protein 3; Provisional	98.44
PLN02449	485	ferrochelatase	85.77
PLN02449	485	ferrochelatase	82.76

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=100.00  E-value=1.3e-35  Score=276.37  Aligned_cols=200  Identities=19%  Similarity=0.149  Sum_probs=142.6

Q ss_pred             CCCccCCCCCchhhhhhcCCCCCccceEEeccccccC--------------CCCCCC--cCCCCc-ccCCCCCCCCc--c
Q 023481           38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKA--------------PPKTKK--VESKPK-VEDGIFGTSGG--F   98 (281)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a--------------~~~~~~--~~~~pk-~~dg~~~~~~~--f   98 (281)
                      .+++|.|+.++|.||||++|+|++|||+.|.+..+..              .++.++  .+..+. ......+++..  +
T Consensus        51 ~r~~w~p~~~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l  130 (286)
T PLN00187         51 DRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGL  130 (286)
T ss_pred             CccccCCCCCCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHH
Confidence            4789999999999999999999999999998776531              122221  011111 11122344444  4


Q ss_pred             CccchhhhhHHHHHHHHHHHHHhhhhhcCcchhhhccc---ccCcccccchh-----HHHHHHHHHHHHHHhhhccCCcc
Q 023481           99 GFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL---ETGIPIYEAEP-----LLLFFILFTLLGAIGALGDRGKF  170 (281)
Q Consensus        99 Gf~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~ql~~---~~G~p~~~~~p-----l~l~~v~f~llgai~~l~~~~~f  170 (281)
                      .|+|++|++||||||||++|++++|+++|..+. ..+.   ..|. .|...+     ..++++.+++++++|.+..    
T Consensus       131 ~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~-~aG~~~~~~g~-~y~g~~~p~~~~~l~~iqvllmG~~E~~R~----  204 (286)
T PLN00187        131 QRFRECELIHGRWAMLATLGALSVEALTGVTWQ-DAGKVELVDGS-SYLGQPLPFSITTLIWIEVLVIGYIEFQRN----  204 (286)
T ss_pred             HHHHHHHhhhhHHHHHHhhchhhHHhccCCccc-ccccccccccc-cccccccchhHHHHHHHHHHHHHHHHhhhc----
Confidence            688999999999999999999999998765321 1111   0111 111111     2344566667888864321    


Q ss_pred             cCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          171 VDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       171 ~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      ....      .....|||+.+|||+|+.++++++..+|.+||+||||||+|++|+++|+.+||+|+++||..|+.+|..
T Consensus       205 ~~~~------~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~  277 (286)
T PLN00187        205 AELD------PEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH  277 (286)
T ss_pred             cCCC------CCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccc
Confidence            1100      012368999878999998877788899999999999999999999999999999999999999999964

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=100.00  E-value=1e-34  Score=268.08  Aligned_cols=193  Identities=22%  Similarity=0.272  Sum_probs=142.4

Q ss_pred             CCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHH
Q 023481           37 FSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF  116 (281)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~  116 (281)
                      ..+.+|.|..+.|.|||+++|+|.+||++.|.++.   ..+..        .        ...|.|++|++||||||||+
T Consensus        40 ~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~~p~---~~~~~--------~--------~~~~~r~aEL~hGR~AMLa~  100 (262)
T PLN00048         40 ADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPE---GAGGF--------I--------EPQWLAYGEVINGRFAMLGA  100 (262)
T ss_pred             CCCceecCCCCCccccCCCCCCccCCCccccCCcc---ccccc--------h--------hHHHHHHHHhhcchHHHHHH
Confidence            36899999999999999999999999999994221   11100        0        12468899999999999999


Q ss_pred             HHHHhhhhhcCcchhhhcc----cccCc------ccccchhHHHHHHHHHHHHHHhhhccCCccc-CCC--CC-CCC---
Q 023481          117 AASLLGEGITGKGILAQLN----LETGI------PIYEAEPLLLFFILFTLLGAIGALGDRGKFV-DEP--DE-PTG---  179 (281)
Q Consensus       117 ~g~lv~E~~tg~gil~ql~----~~~G~------p~~~~~pl~l~~v~f~llgai~~l~~~~~f~-~~~--~~-p~G---  179 (281)
                      +|++++|++++.|++.+..    ...|.      ..|...+..++++.+.+++++|.... ..+. ...  .. ..+   
T Consensus       101 ~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~-~~~~~pG~~~~~~~~~~~~  179 (262)
T PLN00048        101 AGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRA-QDYYKPGSMGKQYFLGLEK  179 (262)
T ss_pred             hhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeecc-ccccCCCcccccccccchh
Confidence            9999999999887754321    11221      11333455666778888888864211 1111 000  00 000   


Q ss_pred             -C--CCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          180 -L--GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       180 -~--~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                       .  ..+..||||.+|||+|++++++++..+|.+||+||||||+|++|+++|+++||+|+++||..|+.+|..
T Consensus       180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~  252 (262)
T PLN00048        180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVN  252 (262)
T ss_pred             ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCccc
Confidence             0  113469999889999999887788999999999999999999999999999999999999999999964

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=100.00  E-value=3.5e-34  Score=262.82  Aligned_cols=183  Identities=25%  Similarity=0.237  Sum_probs=136.9

Q ss_pred             CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481           38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA  117 (281)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~  117 (281)
                      .+.+|.|..+.|.|||+++|+|.+||++.|.+.                        ...+.++|++|++||||||+|++
T Consensus        52 ~r~~W~P~~~~P~~LdG~~PGD~GFDPlGl~~d------------------------~~~~~~~r~aEl~hGRlAMla~~  107 (250)
T PLN00101         52 KKGEWLPGLASPGYLNGSLPGDNGFDPLGLAED------------------------PENLKWFVQAELVNGRWAMLGVA  107 (250)
T ss_pred             cccccCCCCCCCcccCCCCCCccCCCccccCCC------------------------HHHHHHHHHHHHhcccHHHHHHH
Confidence            577999999999999999999999999998421                        12356789999999999999999


Q ss_pred             HHHhhhhhcCcchhhhcc-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcc--cCCCCCC--CC---CCCCcCCCCC
Q 023481          118 ASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF--VDEPDEP--TG---LGGAVIPPGK  189 (281)
Q Consensus       118 g~lv~E~~tg~gil~ql~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f--~~~~~~p--~G---~~~~~~~PGd  189 (281)
                      |++++|++++.|++..-. .+.|...+...+..++++.+.+++++|.+......  .....++  .+   .+++..|||+
T Consensus       108 G~l~~e~l~~~g~~~~p~w~~ag~~~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG  187 (250)
T PLN00101        108 GMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG  187 (250)
T ss_pred             HHHHHHHhcCCCCcCCCccccccchhhcccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCC
Confidence            999999999988753211 12343333333445556667788888753211100  0000111  01   1234569998


Q ss_pred             CcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          190 GLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       190 ~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      . ||||||++++    ++|.+||+||||||+|++|+++|+.+||+||++||..|+.+|..
T Consensus       188 ~-FDPLgl~~~~----~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~  242 (250)
T PLN00101        188 I-FNPLNFAPTE----EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWH  242 (250)
T ss_pred             c-cCccCCCccH----HHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcc
Confidence            5 8999998643    68999999999999999999999999999999999999999964

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=100.00  E-value=4.1e-34  Score=264.49  Aligned_cols=189  Identities=20%  Similarity=0.194  Sum_probs=139.6

Q ss_pred             CCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHH
Q 023481           37 FSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF  116 (281)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~  116 (281)
                      -.+.+|.|..+.|.|||+++|+|.+||++.|.+.                        ...+.|+|++||+||||||||+
T Consensus        60 ~~r~~w~Pg~~~P~~LdG~~pGD~GFDPlgl~~~------------------------~~~~~~~r~aEl~HGR~AMLA~  115 (267)
T PLN00098         60 PDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSD------------------------PELLKWFAQAELMHSRWAMLAV  115 (267)
T ss_pred             CCccccCCCCCCCccCCCCCCCCCCcCccccCCC------------------------HHHHHHHHHHHhhccHHHHHHH
Confidence            3567899999999999999999999999988521                        1235689999999999999999


Q ss_pred             HHHHhhhhhcCcchhhhcc-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcccCC--CCCC--CC---CCCCcCCCC
Q 023481          117 AASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDE--PDEP--TG---LGGAVIPPG  188 (281)
Q Consensus       117 ~g~lv~E~~tg~gil~ql~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~~--~~~p--~G---~~~~~~~PG  188 (281)
                      +|++++|++++.|++.... ...|...+...+..++++.+.+++++|..........+  ..++  .+   ...+..|||
T Consensus       116 ~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPG  195 (267)
T PLN00098        116 AGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPG  195 (267)
T ss_pred             HHHHHHHHhcCCCcccccccccccchhhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCC
Confidence            9999999999877654221 12332222223334455666678888752111100000  0000  00   112347999


Q ss_pred             CCcCCCCCCCC-CCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          189 KGLRSALGLKE-GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       189 d~ffDPLGL~~-~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      |.+|||+|+.+ +++++..+|.+||+||||||+|++|+++|+.+||+||++||..|+.+|..
T Consensus       196 g~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~  257 (267)
T PLN00098        196 GLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGH  257 (267)
T ss_pred             CccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCccc
Confidence            98899999974 56678889999999999999999999999999999999999999999954

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=100.00  E-value=1.3e-33  Score=258.22  Aligned_cols=185  Identities=20%  Similarity=0.152  Sum_probs=138.6

Q ss_pred             CCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHH
Q 023481           37 FSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF  116 (281)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~  116 (281)
                      -.+.+|.|....|.|||+++|+|.+||++.|.+.                        ...+.|+|++|++||||||||+
T Consensus        42 ~~R~~w~Pg~~~P~~LdG~~pGD~GfDPlGl~~~------------------------~~~~~~~r~aEl~hGR~AMLa~   97 (244)
T PLN00097         42 ADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGAD------------------------PEMLKWFVQAELMHARWAMLGL   97 (244)
T ss_pred             CCCcccCCCCCCccccCCCCCCCCCCCccccCcC------------------------HHHHHHHHHHHHhcchHHHHHH
Confidence            3578999999999999999999999999998411                        1246789999999999999999


Q ss_pred             HHHHhhhhhcCcchh---hhcccccCccc-ccchhHHHHHHHHHHHHHHhhhccCCcccC---CCCCC------CCCCCC
Q 023481          117 AASLLGEGITGKGIL---AQLNLETGIPI-YEAEPLLLFFILFTLLGAIGALGDRGKFVD---EPDEP------TGLGGA  183 (281)
Q Consensus       117 ~g~lv~E~~tg~gil---~ql~~~~G~p~-~~~~pl~l~~v~f~llgai~~l~~~~~f~~---~~~~p------~G~~~~  183 (281)
                      +|++++|++++.++.   .++.  .|... +......++.+.+.+++++|..... .+..   ...++      .....+
T Consensus        98 ~G~lv~e~l~~~g~~~~p~W~~--Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~-~~~~pg~~~~~p~~~~~~~~~~~d  174 (244)
T PLN00097         98 AGCVAPELLTKIGMADLPNWID--AAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQ-DMKAPGSMNEDPLFGANKGDTNTD  174 (244)
T ss_pred             hhhhHHHHhcCCCcccCCcccc--CCcchhccccchhHHHHHHHHHHHHHHHHhh-cccCCCccccccccccccCCcccc
Confidence            999999999987763   1222  22221 1112234555666678887653211 1110   01111      011234


Q ss_pred             cCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          184 VIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       184 ~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      ..|||+. |||||+.++++++.++|.+||+||||||++++|+++|+.+||+||++||..|+.+|..
T Consensus       175 ~gYPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~  239 (244)
T PLN00097        175 VGYPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGH  239 (244)
T ss_pred             cCCCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccc
Confidence            5699975 7999999887788899999999999999999999999999999999999999999953

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=100.00  E-value=1.7e-33  Score=257.56  Aligned_cols=176  Identities=19%  Similarity=0.211  Sum_probs=129.4

Q ss_pred             CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481           38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA  117 (281)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~  117 (281)
                      -+..|.|..++|.|||++.++|.+||++.|.+..                        ..+.|+|++|++||||||||++
T Consensus        43 ~~~~w~P~~~~P~~Ldg~~pgd~GfDPlgls~~~------------------------~~~~~~r~~ELkHGR~AMLAv~   98 (243)
T PLN00099         43 MSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVP------------------------ENLERYKESELIHCRWAMLAVP   98 (243)
T ss_pred             ccccccCCCCCCccCCCCCCcccCCCccccccCH------------------------HHHHHHHHHhccCCcHHHHHHh
Confidence            3468999999999999999999999999995310                        1367899999999999999999


Q ss_pred             HHHhhhhhcCcchhhhc---cccc------Ccccc-cchhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCcCCC
Q 023481          118 ASLLGEGITGKGILAQL---NLET------GIPIY-EAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPP  187 (281)
Q Consensus       118 g~lv~E~~tg~gil~ql---~~~~------G~p~~-~~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G~~~~~~~P  187 (281)
                      |++++|+++...+.+-.   ....      |.+.. ...+. ++++.+.+++++|...    ....  ++    ....||
T Consensus        99 G~i~~E~l~~~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~-~~~iqvl~ig~~E~~r----~~~~--~~----~~~~yP  167 (243)
T PLN00099         99 GILVPEALGLGNWVKAQEWAAIPGGQATYLGNPVPWGTLPT-ILAIEFLAIAFVEHQR----SMEK--DP----EKKKYP  167 (243)
T ss_pred             hHHHHHHhccCCcccccchhccCcchhhhccCccchhhHHH-HHHHHHHHHHHHHHHh----hccC--CC----CCCcCC
Confidence            99999987642221100   0011      11111 11122 2334466778776421    1111  01    123699


Q ss_pred             CCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhH-HhcCcChHHHhHhhhCCCcc
Q 023481          188 GKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGE-IITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       188 Gd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E-~iTG~g~l~~l~~~~~~P~~  249 (281)
                      || .|||+|++++++++..+|.+||+||||||||++|+++|+ .+||++|++||..|+.+|..
T Consensus       168 Gd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~  229 (243)
T PLN00099        168 GG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH  229 (243)
T ss_pred             CC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCcc
Confidence            99 579999988777888999999999999999999999999 57999999999999999964

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=100.00  E-value=6.7e-33  Score=254.73  Aligned_cols=188  Identities=23%  Similarity=0.223  Sum_probs=137.7

Q ss_pred             CCCCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHH
Q 023481           35 KPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMI  114 (281)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AML  114 (281)
                      ....+..|.|..++|.|||++.|+|.+||++.|.+.                        ...+.|+|++||+||||||+
T Consensus        41 ~~~~R~~wlP~~~~P~~Ldg~~pGD~GFDPlgl~~d------------------------~~~~~~~r~aElkhGR~AMl   96 (252)
T PLN00147         41 VAQERPTWLPGLDPPPHLDGTLAGDFGFDPLGLGED------------------------PESLKWYVQAELVHSRFAMA   96 (252)
T ss_pred             CCCCccccCCCCCCCCcCCCCCCCccCCCcccccCC------------------------HHHHHHHHHHHhhccHHHHH
Confidence            346678999999999999999999999999998421                        12356899999999999999


Q ss_pred             HHHHHHhhhhhcCcchhh---hcccccCccccc-chhHHHHHHHHHHHHHHhhhccCCcccC---CCCC--CCCC-----
Q 023481          115 GFAASLLGEGITGKGILA---QLNLETGIPIYE-AEPLLLFFILFTLLGAIGALGDRGKFVD---EPDE--PTGL-----  180 (281)
Q Consensus       115 G~~g~lv~E~~tg~gil~---ql~~~~G~p~~~-~~pl~l~~v~f~llgai~~l~~~~~f~~---~~~~--p~G~-----  180 (281)
                      |++|++++|+++..++..   ++.  .|...++ .....++++++++++++|..... .+..   ...+  ..+.     
T Consensus        97 A~~G~l~~e~~~~~g~~~~p~w~~--ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~-~~~~pg~~~~~g~~~g~~~~~~  173 (252)
T PLN00147         97 GVAGILFTDLLRVTGIRNLPVWYE--AGAVKFEFASTRTLFVVQLLLMGFAETKRYM-DFVSPGSQAKEGSFFGLEAALE  173 (252)
T ss_pred             HHhhhhHHHHhccCCCcCCcchhh--cccchhccccchHHHHHHHHHHHHHHHHhhc-cccCCCcccccccccccccccc
Confidence            999999999988766421   211  2221111 11122334456678888753110 1110   0000  0000     


Q ss_pred             CCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          181 GGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       181 ~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      ..+..||||.+|||+||.+++++++.+|.+||+||||||+|++|+++||.+||+|++++|..|+.+|..
T Consensus       174 ~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~  242 (252)
T PLN00147        174 GLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWH  242 (252)
T ss_pred             ccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccc
Confidence            012358999889999999887788899999999999999999999999999999999999999999963

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.98  E-value=1.2e-32  Score=251.87  Aligned_cols=175  Identities=21%  Similarity=0.197  Sum_probs=129.9

Q ss_pred             cccCCCCCCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHH
Q 023481           31 MLRPKPFSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGR  110 (281)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR  110 (281)
                      +.+-.-..+.+|.|..+.|.||||+.++|.+||++.+.+.                        ...+.|+|++|++|||
T Consensus        27 ~~~~~~~~r~~W~P~~~~P~~Ldg~~pGd~GFDPlgl~~~------------------------~~~~~~~r~aEl~hGR   82 (246)
T PLN00100         27 RVRVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLGAN------------------------PETLPYLQEAELMNGR   82 (246)
T ss_pred             ccccccCCCcccCCCCCCCCCCCCCCCCCcCCCccccCCC------------------------HHHHHHHHHHHhhcch
Confidence            3444556788999999999999999999999999998421                        0135678999999999


Q ss_pred             HHHHHHHHHHhhhhhcCcchhhhcccccCcccccchhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCcCCCCCC
Q 023481          111 VAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKG  190 (281)
Q Consensus       111 ~AMLG~~g~lv~E~~tg~gil~ql~~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G~~~~~~~PGd~  190 (281)
                      |||+|++|++++|+++..++.+     .|...+......++++.+.+++++|..... .+.     +.+   ...+||++
T Consensus        83 ~AMla~~G~~~~E~~~~P~w~~-----ag~~~~~~~~~~l~~iqill~g~~E~~r~~-~~~-----~~g---~~~~pg~~  148 (246)
T PLN00100         83 WAMAATAGILFTDAVGLPKFWE-----AGAEKYGLDLQTLVLIQVVVMAVLEAARYR-GFM-----KTG---ESGVLSFF  148 (246)
T ss_pred             HHHHHHhhhhHHHHhcccchhh-----cchhhhccchhHHHHHHHHHHHHHhhhccc-ccc-----ccc---ccCCCCCC
Confidence            9999999999999976443322     222222222223334455567877643111 111     111   12357888


Q ss_pred             cCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCc
Q 023481          191 LRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPI  248 (281)
Q Consensus       191 ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~  248 (281)
                      .|||+|+++     +.+|.+||+||||||+||+|+++|+.+||+|+++||..|+.+|.
T Consensus       149 ~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~  201 (246)
T PLN00100        149 PFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPG  201 (246)
T ss_pred             CCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCc
Confidence            899999963     36899999999999999999999999999999999999999995

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.97  E-value=1.2e-32  Score=254.06  Aligned_cols=180  Identities=23%  Similarity=0.315  Sum_probs=132.6

Q ss_pred             CCCccC-CCC-CchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHH
Q 023481           38 SHLMFN-PLS-NESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIG  115 (281)
Q Consensus        38 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG  115 (281)
                      .+.+|. |.. ++|.|||++.++|.+|||+.|.+.                        ...+.++|++|++||||||||
T Consensus        50 ~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~d------------------------p~~~~~~re~El~hGR~AMLa  105 (262)
T PLN00025         50 DRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSAD------------------------PETFARNRELEVIHARWAMLG  105 (262)
T ss_pred             CCccccCCcccCCcccccCcCCCCCCCCccccccC------------------------HHHHHHHHHHHHhccHHHHHH
Confidence            456777 433 689999999999999999998521                        123678999999999999999


Q ss_pred             HHHHHhhhhhcCcchh-h---hccc-----------ccCccc-ccchh-HHHHHHHHHHHHHHhhhccCCcccCCCCCCC
Q 023481          116 FAASLLGEGITGKGIL-A---QLNL-----------ETGIPI-YEAEP-LLLFFILFTLLGAIGALGDRGKFVDEPDEPT  178 (281)
Q Consensus       116 ~~g~lv~E~~tg~gil-~---ql~~-----------~~G~p~-~~~~p-l~l~~v~f~llgai~~l~~~~~f~~~~~~p~  178 (281)
                      ++|++++|++++.++. .   |+..           ..+.+. .+... ..++++.+++++++|.+.    +...   +.
T Consensus       106 ~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r----~~~~---~~  178 (262)
T PLN00025        106 ALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR----VNGG---PL  178 (262)
T ss_pred             HhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhc----ccCC---cc
Confidence            9999999999866552 1   1110           011111 11111 223445666788887532    1110   11


Q ss_pred             CCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          179 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       179 G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      +...+..|||+. |||||+.++++++..+|.+||+||||||++++|+++|+.+||+||++||..|+.+|..
T Consensus       179 ~~~~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~  248 (262)
T PLN00025        179 GEGLDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVA  248 (262)
T ss_pred             cccccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccc
Confidence            111234799997 8999999877788899999999999999999999999999999999999999999964

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=99.97  E-value=8.8e-31  Score=247.06  Aligned_cols=188  Identities=19%  Similarity=0.121  Sum_probs=130.4

Q ss_pred             CCCCccCCC-C-CchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHH
Q 023481           37 FSHLMFNPL-S-NESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMI  114 (281)
Q Consensus        37 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AML  114 (281)
                      -.+.+|.|. + +.|.||||++++|.+||++.|.+.                        ...+.|+|++||+|||||||
T Consensus       106 ~~R~~wl~~~~~~~P~yLdG~lpGD~GFDPLGL~~d------------------------p~~l~~~reaELkHGR~AML  161 (324)
T PLN00171        106 EERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKD------------------------PVAFDKYFNFEILHARWAML  161 (324)
T ss_pred             CCCccccCCCCCCCCcccCCCCCcccCCCccccccC------------------------HHHHHHHHHHHhccchHHHH
Confidence            456778853 3 789999999999999999999531                        11357899999999999999


Q ss_pred             HHHHHHhhhhhcCcchhhhc-------cc---------ccCcccc--cc-hh-HHHHHHHHHHHHHHhhhccCCcccCCC
Q 023481          115 GFAASLLGEGITGKGILAQL-------NL---------ETGIPIY--EA-EP-LLLFFILFTLLGAIGALGDRGKFVDEP  174 (281)
Q Consensus       115 G~~g~lv~E~~tg~gil~ql-------~~---------~~G~p~~--~~-~p-l~l~~v~f~llgai~~l~~~~~f~~~~  174 (281)
                      |++|++++|+++..+.....       +.         ..+.|..  .. .. ..++++.+++++.+|.... .......
T Consensus       162 A~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~-~~~~~~~  240 (324)
T PLN00171        162 AALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARY-CGIEALE  240 (324)
T ss_pred             HHhhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheee-ccccccC
Confidence            99999999998866543211       10         0011210  00 00 1123334444444432111 1111000


Q ss_pred             CCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          175 DEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       175 ~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      ......+++..|||+.+|||+|++++++++..++.+||+||||||+|++|+++|+.+||+||++||..|+.+|..
T Consensus       241 ~~g~~~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~  315 (324)
T PLN00171        241 PLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLH  315 (324)
T ss_pred             CccccCCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccc
Confidence            000112344568998778999999877788899999999999999999999999999999999999999999964

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.96  E-value=2.3e-29  Score=214.11  Aligned_cols=150  Identities=26%  Similarity=0.260  Sum_probs=107.7

Q ss_pred             hhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHHHHHhhhhhcCc
Q 023481           49 SLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGK  128 (281)
Q Consensus        49 ~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~  128 (281)
                      |.+|||+.+++.+||++.|.+..                         .+.|+|++|++|||+||+|+++++++|+.++.
T Consensus         2 p~~l~G~~~~~~gfDPlgl~~~~-------------------------~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~   56 (156)
T PF00504_consen    2 PPYLDGSVPGDYGFDPLGLSSDP-------------------------DFAWYREAELKHGRVAMLAFVGALVQEAGTGF   56 (156)
T ss_dssp             -TTTTSTSTTSTSSSTTTTTTSH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred             cccccCCCCCCCCCChhhcccch-------------------------hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence            77899999999999999986432                         57899999999999999999999999999875


Q ss_pred             ch----hhhcccc-cCcccccchhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCc
Q 023481          129 GI----LAQLNLE-TGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPI  203 (281)
Q Consensus       129 gi----l~ql~~~-~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~  203 (281)
                      +.    ..+.... .+.  .. .+....++++.++++++.+..........    .......+||+..|||+|+.++++.
T Consensus        57 ~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~ig~~e~~~~~~~~~~~~----~~~~~~~~pG~~~~dplgl~~~~~~  129 (156)
T PF00504_consen   57 PGVPSFLGQPAWAEAGG--IP-VPAAGWAQILLFIGALEPWRQQGVPEPGE----GGGKDGRYPGDLGFDPLGLAKDPEE  129 (156)
T ss_dssp             TSSS-SSTSSSSSSTTS--SS-SHSHHHHHHHHHHHHHHHHHHHHTTTCCT----TSSSSSSSSSSSSSSTSSTSSSCHS
T ss_pred             Ccccccccccchhhhhh--hh-hhhHHHHHHHHHHhHhhhhhcccccCCcc----cccccccCccccccchhhhhhhhhh
Confidence            43    2222111 110  01 23344456777778777643221111110    0012346899988999999877778


Q ss_pred             ccccchhhhhhhhHHHHHHHHHHHhHH
Q 023481          204 FGFTKSNELFVGRLAQLGIAFSLIGEI  230 (281)
Q Consensus       204 f~~tk~aEl~NGRLAMlG~~g~lv~E~  230 (281)
                      +.+++.+||+|||||||||+++++||.
T Consensus       130 ~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  130 KEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            889999999999999999999999983

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.95  E-value=1.6e-28  Score=225.98  Aligned_cols=177  Identities=19%  Similarity=0.158  Sum_probs=124.3

Q ss_pred             CCCccCCCCC------chhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHH
Q 023481           38 SHLMFNPLSN------ESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRV  111 (281)
Q Consensus        38 ~~~~~~~~~~------~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~  111 (281)
                      .+..|.|...      .|.|+|++.|+|.+||++.|.+                   |     ...+.++|++|++||||
T Consensus        50 ~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~-------------------d-----~e~~~~~r~~El~hGR~  105 (255)
T PLN00170         50 PKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGK-------------------D-----PAFLKWYREAELIHGRW  105 (255)
T ss_pred             CCccccCCCCCCcccCCcccccccCCCCCCcCccccCC-------------------C-----HHHHHHHHHHHhhccHH
Confidence            3447887653      6999999999999999998842                   1     12356889999999999


Q ss_pred             HHHHHHHHHhhhhhcCcchhhhcccccCcccccchhHHHHHHHHHHHHHHhhhccCC--cccCCCCCC-----------C
Q 023481          112 AMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRG--KFVDEPDEP-----------T  178 (281)
Q Consensus       112 AMLG~~g~lv~E~~tg~gil~ql~~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~--~f~~~~~~p-----------~  178 (281)
                      ||+|++|++++|+++|..+++. +...+ .+.......++.+.+.+++++|.+....  +......++           .
T Consensus       106 AMLa~~G~~v~e~l~g~~w~~a-G~~~~-~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~  183 (255)
T PLN00170        106 AMAAVVGIFVGQAWSGIPWFEA-GADPG-AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFA  183 (255)
T ss_pred             HHHHHHhhhhHHHccCCChhhC-Ccccc-ccCccchHHHHHHHHHHhhhhhheeeccccCCccccccccccccccccccc
Confidence            9999999999999998754332 11100 0111111345556777888887532111  000000010           0


Q ss_pred             CCCCCcCCCCCCcCCCCCCCC---------CCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhH
Q 023481          179 GLGGAVIPPGKGLRSALGLKE---------GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN  241 (281)
Q Consensus       179 G~~~~~~~PGd~ffDPLGL~~---------~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~  241 (281)
                      ....+..|||+.+||||||.+         +++++.++|.+||+||||||++++|+++|. .||++||++|+
T Consensus       184 ~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~  254 (255)
T PLN00170        184 NATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG  254 (255)
T ss_pred             ccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence            112245699998899999975         445778899999999999999999999999 79999999986

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=99.92  E-value=7.4e-26  Score=203.45  Aligned_cols=134  Identities=22%  Similarity=0.172  Sum_probs=91.1

Q ss_pred             ccCccchhhhhHHHHHHHHHHHHHhhhhhcCcchhhhc-ccccCcccccchhHHH-HHHHHHHHHHHhhhccCCcccCCC
Q 023481           97 GFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQL-NLETGIPIYEAEPLLL-FFILFTLLGAIGALGDRGKFVDEP  174 (281)
Q Consensus        97 ~fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~ql-~~~~G~p~~~~~pl~l-~~v~f~llgai~~l~~~~~f~~~~  174 (281)
                      .+.|+|++||+|||+||||++|++++|.++..|....+ +...+...+...+... ..+++.+++++|....... ... 
T Consensus        71 ~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~~~~~g~~~Qi~~~ig~~E~~~~~~~-~~~-  148 (209)
T PLN00089         71 FLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDALLKSGAMIQIFAWIGFVDLAVSAPA-AAA-  148 (209)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHhhcccccHHHHHHHHHHHHHHHhhcc-ccc-
Confidence            35688999999999999999999999998866532111 1111111111112211 2456666777763211000 000 


Q ss_pred             CCCCCCCCCcCCCCCCcCCCCCCC-CCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481          175 DEPTGLGGAVIPPGKGLRSALGLK-EGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL  237 (281)
Q Consensus       175 ~~p~G~~~~~~~PGd~ffDPLGL~-~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l  237 (281)
                           ......+|||..|||+|+. +++++++.+|.+||+|||||||||+|+++||.+||++++
T Consensus       149 -----~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~  207 (209)
T PLN00089        149 -----AAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP  207 (209)
T ss_pred             -----cccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence                 0112358999889999995 566678889999999999999999999999999999875

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=99.84  E-value=1e-21  Score=175.95  Aligned_cols=130  Identities=20%  Similarity=0.190  Sum_probs=83.5

Q ss_pred             CccCccchhhhhHHHHHHHHHHHHHhhhh-hcCcchhhhccc-----ccCcccccchhHHHHHHHHHHHHHHhhhccCCc
Q 023481           96 GGFGFTKQNELFVGRVAMIGFAASLLGEG-ITGKGILAQLNL-----ETGIPIYEAEPLLLFFILFTLLGAIGALGDRGK  169 (281)
Q Consensus        96 ~~fGf~r~aEl~nGR~AMLG~~g~lv~E~-~tg~gil~ql~~-----~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~  169 (281)
                      ..+.++|++|++|||+||+|++|++++|. .+..|.+...+.     ..+...+...|...+++++.+++.+|.+.... 
T Consensus        59 ~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ig~~E~~~~~~-  137 (202)
T PLN00120         59 EKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAFIGFLELAVMKD-  137 (202)
T ss_pred             HHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHhhcc-
Confidence            45778999999999999999999999996 343332221111     01111222334444567777788876432111 


Q ss_pred             ccCCCCCCCCCCCCcCCCCCCcCC--CCCCCC-CCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481          170 FVDEPDEPTGLGGAVIPPGKGLRS--ALGLKE-GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA  236 (281)
Q Consensus       170 f~~~~~~p~G~~~~~~~PGd~ffD--PLGL~~-~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~  236 (281)
                             ..+   ...+|||.-++  ++|++. +++++..++++||+|||||||||+|+++||.++|.-+
T Consensus       138 -------~~~---~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~  197 (202)
T PLN00120        138 -------ITG---EGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELP  197 (202)
T ss_pred             -------ccc---CCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence                   111   12356653211  445443 3446667889999999999999999999999999754

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=99.55  E-value=2.8e-15  Score=131.34  Aligned_cols=64  Identities=45%  Similarity=0.700  Sum_probs=55.0

Q ss_pred             cccccchhhhhhhhHHHHHHHHHHHhHHhc-CcChHHHhHhhhCCCcccchhhHHHHH--HHHHHhh
Q 023481          203 IFGFTKSNELFVGRLAQLGIAFSLIGEIIT-GKGALAQLNIETGIPINEIEPLVLFNV--IFFFVAA  266 (281)
Q Consensus       203 ~f~~tk~aEl~NGRLAMlG~~g~lv~E~iT-G~g~l~~l~~~~~~P~~~~~~~~~~~~--~~~~~~a  266 (281)
                      .-+++|.+|+|||||||+||+..++.|++| |+|+++|++.++|.|+.|+||+++|.+  ++|.+.|
T Consensus       131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl~gV~fNvVa  197 (214)
T PLN00084        131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFLFGVFFNVVA  197 (214)
T ss_pred             HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHHHHHhhhhhc
Confidence            455789999999999999999999999999 999999999999999999998875543  4444444

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=99.36  E-value=5.8e-13  Score=124.01  Aligned_cols=69  Identities=26%  Similarity=0.301  Sum_probs=56.2

Q ss_pred             cccCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHH
Q 023481          169 KFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ  239 (281)
Q Consensus       169 ~f~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~  239 (281)
                      .|..+.+.|..+++  .+|||..||||||+++++.+++++.+||+|||+||+|++|++++|++++.|+++.
T Consensus        64 ~w~Pg~~~P~~LdG--~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~  132 (267)
T PLN00098         64 LWFPGSSPPEWLDG--SLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN  132 (267)
T ss_pred             ccCCCCCCCccCCC--CCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence            34444333444443  3799999999999988778999999999999999999999999999998887654

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=99.31  E-value=1.7e-12  Score=119.98  Aligned_cols=53  Identities=34%  Similarity=0.413  Sum_probs=49.7

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL  237 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l  237 (281)
                      .+|||..||||||+++++.+++++.+||+|||+||+|++|++++|.+|+.|++
T Consensus        69 ~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~  121 (250)
T PLN00101         69 SLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII  121 (250)
T ss_pred             CCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence            47999999999999887789999999999999999999999999999999876

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=99.20  E-value=7.9e-12  Score=115.65  Aligned_cols=52  Identities=25%  Similarity=0.254  Sum_probs=47.7

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA  236 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~  236 (281)
                      .+|||..|||||++++++++++++.+||+|||+||+|++|++++|.++..+.
T Consensus        61 ~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~  112 (252)
T PLN00147         61 TLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGI  112 (252)
T ss_pred             CCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence            5899999999999887778999999999999999999999999999987654

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=99.20  E-value=1.3e-11  Score=113.68  Aligned_cols=68  Identities=24%  Similarity=0.264  Sum_probs=55.3

Q ss_pred             CCcccCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481          167 RGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA  236 (281)
Q Consensus       167 ~~~f~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~  236 (281)
                      +..|......|..+++  ..|||+.||||||+++++.+++++.+||+|||+||+|++|++++|++++.++
T Consensus        44 R~~w~Pg~~~P~~LdG--~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~  111 (244)
T PLN00097         44 RPTWLPGKAAAAHLDG--SLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM  111 (244)
T ss_pred             CcccCCCCCCccccCC--CCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence            3345444333444433  4799999999999987778999999999999999999999999999998765

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=99.15  E-value=2.2e-11  Score=112.83  Aligned_cols=54  Identities=22%  Similarity=0.293  Sum_probs=49.6

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHH
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALA  238 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~  238 (281)
                      .+|||+.|||+||.++++.+++++.+||+|||+||+|++|++++|.++|...++
T Consensus        73 ~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~  126 (255)
T PLN00170         73 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE  126 (255)
T ss_pred             cCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence            479999999999998888899999999999999999999999999999886554

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=99.14  E-value=6.8e-11  Score=110.04  Aligned_cols=55  Identities=29%  Similarity=0.320  Sum_probs=45.5

Q ss_pred             CCCCCCcCCCCCCCCCCC-----cccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHH
Q 023481          185 IPPGKGLRSALGLKEGGP-----IFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQ  239 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~-----~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~  239 (281)
                      ..|||+.||||||++.+.     +.++++.+||+|||+||+|++|++++|+++++|++.+
T Consensus        58 ~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~  117 (262)
T PLN00048         58 TLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ  117 (262)
T ss_pred             CCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence            479999999999974221     2346788999999999999999999999998887653

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=99.14  E-value=1.9e-11  Score=104.12  Aligned_cols=49  Identities=33%  Similarity=0.344  Sum_probs=44.0

Q ss_pred             CCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcC
Q 023481          186 PPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKG  235 (281)
Q Consensus       186 ~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g  235 (281)
                      ++|+..|||+||+++. .+.+++.+|++|||+||+|+++++++|+.++.+
T Consensus         9 ~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~   57 (156)
T PF00504_consen    9 VPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP   57 (156)
T ss_dssp             STTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred             CCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence            5777789999999755 788999999999999999999999999998853

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=99.13  E-value=5.1e-11  Score=111.96  Aligned_cols=50  Identities=26%  Similarity=0.179  Sum_probs=44.5

Q ss_pred             CCCCCCcCCCCCCCCCCCc-------------------------------------------ccccchhhhhhhhHHHHH
Q 023481          185 IPPGKGLRSALGLKEGGPI-------------------------------------------FGFTKSNELFVGRLAQLG  221 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~-------------------------------------------f~~tk~aEl~NGRLAMlG  221 (281)
                      ..|||++||||||+++++.                                           +++++.+||+|||+||+|
T Consensus        68 slpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAMLA  147 (286)
T PLN00187         68 SLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLA  147 (286)
T ss_pred             CCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHHHH
Confidence            3799999999999876653                                           478899999999999999


Q ss_pred             HHHHHHhHHhcCc
Q 023481          222 IAFSLIGEIITGK  234 (281)
Q Consensus       222 ~~g~lv~E~iTG~  234 (281)
                      ++|++++|+++|.
T Consensus       148 vaG~lvpEll~G~  160 (286)
T PLN00187        148 TLGALSVEALTGV  160 (286)
T ss_pred             hhchhhHHhccCC
Confidence            9999999998875

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=99.12  E-value=3.1e-11  Score=112.26  Aligned_cols=52  Identities=23%  Similarity=0.261  Sum_probs=47.5

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGA  236 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~  236 (281)
                      ..|||..|||+||+++++.+.+++.+||+|||+||+|++|++++|++++.+.
T Consensus        69 ~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~  120 (262)
T PLN00025         69 EFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGV  120 (262)
T ss_pred             cCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence            4699999999999987778999999999999999999999999999987654

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=99.08  E-value=9.8e-11  Score=107.95  Aligned_cols=49  Identities=27%  Similarity=0.134  Sum_probs=45.0

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcC
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG  233 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG  233 (281)
                      ..|||.+||||||+++++.+++++.+||+|||+||+|++|++++|.++.
T Consensus        60 ~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~  108 (243)
T PLN00099         60 SAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL  108 (243)
T ss_pred             CCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence            5799999999999887778999999999999999999999999998753

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=99.08  E-value=6.1e-11  Score=109.34  Aligned_cols=48  Identities=21%  Similarity=0.167  Sum_probs=44.4

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhc
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIIT  232 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iT  232 (281)
                      .+|||++||||||+++++.+++++.+||+|||+||+|++|++++|.++
T Consensus        51 ~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~   98 (246)
T PLN00100         51 TMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG   98 (246)
T ss_pred             CCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence            479999999999988777888999999999999999999999999875

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=99.06  E-value=5e-11  Score=113.49  Aligned_cols=53  Identities=25%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL  237 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l  237 (281)
                      ..|||++||||||++++..+++++.+||+|||+||+|++|++++|++++.+..
T Consensus       126 ~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~  178 (324)
T PLN00171        126 ELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAV  178 (324)
T ss_pred             CCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence            47999999999999877788999999999999999999999999998876543

>PHA02337 putative high light inducible protein

Probab=99.04  E-value=1.5e-10  Score=77.17  Aligned_cols=32  Identities=41%  Similarity=0.560  Sum_probs=30.0

Q ss_pred             ccchhhhhHHHHHHHHHHHHHhhhhhcCcchh
Q 023481          100 FTKQNELFVGRVAMIGFAASLLGEGITGKGIL  131 (281)
Q Consensus       100 f~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil  131 (281)
                      |+.++|+||||+||+||+..++.|+.||+++.
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip   32 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP   32 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence            67899999999999999999999999999864

>PHA02337 putative high light inducible protein

Probab=98.99  E-value=2.9e-10  Score=75.73  Aligned_cols=31  Identities=29%  Similarity=0.359  Sum_probs=28.7

Q ss_pred             ccchhhhhhhhHHHHHHHHHHHhHHhcCcCh
Q 023481          206 FTKSNELFVGRLAQLGIAFSLIGEIITGKGA  236 (281)
Q Consensus       206 ~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~  236 (281)
                      |+..+|++|||+|||||+..+..|++||+++
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~i   31 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQII   31 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence            4678999999999999999999999999975

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=98.99  E-value=6.1e-10  Score=100.71  Aligned_cols=49  Identities=27%  Similarity=0.325  Sum_probs=42.3

Q ss_pred             CCCCcCCCCCCCCC-CCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcC
Q 023481          187 PGKGLRSALGLKEG-GPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKG  235 (281)
Q Consensus       187 PGd~ffDPLGL~~~-~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g  235 (281)
                      .||.+|||||+++. ++.+++++.+||+|||+||+|++|+++||.++.-|
T Consensus        54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG  103 (209)
T PLN00089         54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG  103 (209)
T ss_pred             CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence            57778999999864 34688999999999999999999999999987544

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=98.97  E-value=6e-10  Score=98.04  Aligned_cols=53  Identities=47%  Similarity=0.829  Sum_probs=48.5

Q ss_pred             cchhhhhHHHHHHHHHHHHHhhhhhc-CcchhhhcccccCcccccchhHHHHHH
Q 023481          101 TKQNELFVGRVAMIGFAASLLGEGIT-GKGILAQLNLETGIPIYEAEPLLLFFI  153 (281)
Q Consensus       101 ~r~aEl~nGR~AMLG~~g~lv~E~~t-g~gil~ql~~~~G~p~~~~~pl~l~~v  153 (281)
                      ++..|+||||+||+||+..++.|++| |+|++.|++.++|.|+++.++..++++
T Consensus       135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~e~E~f~~fFl  188 (214)
T PLN00084        135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVIDEELFAAFFL  188 (214)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcchhhHHHHHHHH
Confidence            46799999999999999999999999 999999999999999999988765544

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=98.60  E-value=4.1e-08  Score=89.86  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=35.8

Q ss_pred             chhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCC
Q 023481          208 KSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI  246 (281)
Q Consensus       208 k~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~  246 (281)
                      ..+|+.|||+|||||+..++.|++||+|+++|++...+.
T Consensus       160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k  198 (250)
T PLN00014        160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCK  198 (250)
T ss_pred             chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhH
Confidence            469999999999999999999999999999999876655

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=98.54  E-value=2.3e-08  Score=90.11  Aligned_cols=45  Identities=24%  Similarity=0.284  Sum_probs=38.6

Q ss_pred             CCCCCCcCCCCCCCC--CCCcccccchhhhhhhhHHHHHHHHHHHhHH
Q 023481          185 IPPGKGLRSALGLKE--GGPIFGFTKSNELFVGRLAQLGIAFSLIGEI  230 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~--~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~  230 (281)
                      ..|.+ +|||+|+++  +++++.+++.+||+|||+||+|++|++++|.
T Consensus        41 ~~p~g-~fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         41 QAPLG-FFDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             CCCCC-CCCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence            45665 589999974  4457889999999999999999999999996

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=98.44  E-value=2.2e-07  Score=85.15  Aligned_cols=35  Identities=37%  Similarity=0.656  Sum_probs=33.0

Q ss_pred             chhhhhHHHHHHHHHHHHHhhhhhcCcchhhhccc
Q 023481          102 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNL  136 (281)
Q Consensus       102 r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~ql~~  136 (281)
                      .++|++|||+||+||+.+++.|++||+|+++|++.
T Consensus       160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~  194 (250)
T PLN00014        160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN  194 (250)
T ss_pred             chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence            46999999999999999999999999999999875

>PLN02449 ferrochelatase

Probab=85.77  E-value=0.49  Score=48.22  Aligned_cols=30  Identities=33%  Similarity=0.360  Sum_probs=26.6

Q ss_pred             CCccCccchhhhhHHHHHHHHHHHHHhhhhhcCcchhh
Q 023481           95 SGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA  132 (281)
Q Consensus        95 ~~~fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~  132 (281)
                      .|.|||++        +||+||+..++.|+++|+|++.
T Consensus       455 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  484 (485)
T PLN02449        455 VWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLH  484 (485)
T ss_pred             hhhhcccc--------hHHHHHHHHHHHHHHcCCCcCC
Confidence            46788887        9999999999999999999764

>PLN02449 ferrochelatase

Probab=82.76  E-value=0.73  Score=47.00  Aligned_cols=22  Identities=32%  Similarity=0.449  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhHHhcCcChHH
Q 023481          217 LAQLGIAFSLIGEIITGKGALA  238 (281)
Q Consensus       217 LAMlG~~g~lv~E~iTG~g~l~  238 (281)
                      +||+||+.+++.|++||+|+|.
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~  484 (485)
T PLN02449        463 AAMLAVLLLLVLEVTSGFGNLH  484 (485)
T ss_pred             hHHHHHHHHHHHHHHcCCCcCC
Confidence            9999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	281
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	2e-10
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	8e-10
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	1e-09
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	2e-08
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	1e-07
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	2e-07

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 49/257 (19%), Positives = 73/257 (28%), Gaps = 28/257 (10%)

Query: 5   MLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNESLTAAAASSSSKAFST 64
           M      S   A  +   S     +     K F       L  +    ++ +S S+  ST
Sbjct: 1   MASACASSAIAAVAISTPSSQKNGSPSGTSKAF-------LGRKLKVNSSTASPSRVRST 53

Query: 65  VALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGF------------GFTKQNELFVGRVA 112
             +        P      + P   DG      GF             +  Q EL   R A
Sbjct: 54  STVCTVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWA 113

Query: 113 MIGFAASLLGEGITGKG-ILAQLNLETGIPIYEAEPLLLFFILFTLLG--------AIGA 163
           M+G A   + E +T  G +        G   Y  +   LF +    +G         I  
Sbjct: 114 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWADILN 173

Query: 164 LGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIA 223
            G        P+          P G                   ++ E+  GRLA L + 
Sbjct: 174 PGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVM 233

Query: 224 FSLIGEIITGKGALAQL 240
            +    I TG G +  L
Sbjct: 234 GAWFQHIYTGTGPIDNL 250

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243

 Score = 57.1 bits (136), Expect = 8e-10
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 12/202 (5%)

Query: 42  FNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFT 101
           F+P                    +A   +      +T+  + K       +    G    
Sbjct: 34  FDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKS-TSLQPYSEVFGLQRF 92

Query: 102 KQNELFVGRVAMIGFAASLLGEGITGKGIL---AQLNLETGIPIYEAEPLLLFFILFTLL 158
           ++ EL  GR AM+    +L  EG+TG           +E    + +  P  +  +++  +
Sbjct: 93  RECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEV 152

Query: 159 GAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLA 218
             IG +  +     + ++    GG   P        LGL          +  E+   RLA
Sbjct: 153 LVIGYIEFQRNAELDTEKRLYPGGTFDP--------LGLASDPEKKPILQLAEIKHARLA 204

Query: 219 QLGIAFSLIGEIITGKGALAQL 240
            +G     +   +TGKG L   
Sbjct: 205 MVGFLGFAVQAAVTGKGPLNNW 226

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232

 Score = 56.1 bits (134), Expect = 1e-09
 Identities = 36/195 (18%), Positives = 59/195 (30%), Gaps = 27/195 (13%)

Query: 90  GIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLL 149
           G+      F   ++ E+   R AM+G   S+  E ++  G+            ++A   +
Sbjct: 50  GLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVK-----FGEAVWFKAGSQI 104

Query: 150 LFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFT-- 207
                   LG    +  +        +   +G        G      +    P   F   
Sbjct: 105 FSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPL 164

Query: 208 ------------KSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPINEIEPLV 255
                       K  EL  GRLA   +    +  I+TGKG L  L      P+N      
Sbjct: 165 GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN------ 218

Query: 256 LFNVIFFFVAALNPG 270
             N  + +     PG
Sbjct: 219 --NNAWSYATNFVPG 231

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 50/217 (23%), Positives = 68/217 (31%), Gaps = 26/217 (11%)

Query: 49  SLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESK----------PKVEDGIFGTSGGF 98
            L +     SS   +    F+    +P  + KVE+K          P    G      GF
Sbjct: 17  GLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGF 76

Query: 99  ------------GFTKQNELFVGRVAMIGFAASLLGEGITGKGIL-AQLNLETGIPIYEA 145
                        +  Q EL  GR AM+G A  LL E  T  GI+        G   Y A
Sbjct: 77  DPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA 136

Query: 146 EPLLLFFILFTLLGAIGALGDRGKF--VDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPI 203
               LF I F L   +     +          +P     ++     G    +        
Sbjct: 137 SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAP 196

Query: 204 FGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 240
               K  E+  GRL  L     +I   +TGKG    L
Sbjct: 197 TLEAKEKEIANGRLM-LAFLGFIIQHNVTGKGPFDNL 232

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 51/248 (20%), Positives = 75/248 (30%), Gaps = 45/248 (18%)

Query: 38  SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPK---------VE 88
           S L F+  +        +  S   FS  A F  K  A P  K+   +P            
Sbjct: 10  SSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLSYL 69

Query: 89  DGIFGTSGGF---GFTK--------------QNELFVGRVAMIGFAASLLGEGITGKGIL 131
           DG      GF   G +                 E+  GR AM+G   ++  E +   G++
Sbjct: 70  DGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129

Query: 132 ----------AQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEP------- 174
                            G   Y A+   LF     L+G       +              
Sbjct: 130 PQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFL 189

Query: 175 --DEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIIT 232
             ++  G  G    PG    + LG  +        K  E+  GRLA L I    +  ++T
Sbjct: 190 GLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVT 249

Query: 233 GKGALAQL 240
           G G    L
Sbjct: 250 GVGPYQNL 257

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 40/220 (18%), Positives = 63/220 (28%), Gaps = 19/220 (8%)

Query: 38  SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKV----ESKPKVEDGIFG 93
           + LM   ++    +  ++S S    + V L  +      +        E +P   DG   
Sbjct: 4   NSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDGSAP 63

Query: 94  TSGGF---GFTK---------QNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIP 141
              GF   G  +         ++EL   R AM+     L+ E +     +          
Sbjct: 64  GDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA--L 121

Query: 142 IYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKEGG 201
                  L   + +  L  I A+        E                G    LG  +  
Sbjct: 122 PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDP 181

Query: 202 PIFGFTKSNELFVGRLAQLGIA-FSLIGEIITGKGALAQL 240
                 K  E+  GRLA L    F +      G G L  L
Sbjct: 182 KKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	281
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	100.0
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	99.97
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.97
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.97
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.96
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	99.96
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	99.18
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	99.14
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	99.08
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	99.03
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	98.92
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.91

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=100.00  E-value=3.2e-36  Score=273.86  Aligned_cols=201  Identities=21%  Similarity=0.202  Sum_probs=104.0

Q ss_pred             CCCCccCCCCCchhhhhhcCCCCCccceEEecccccc--------------CCCCCCCcCCCCc--ccC-CCCCCCC--c
Q 023481           37 FSHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTK--------------APPKTKKVESKPK--VED-GIFGTSG--G   97 (281)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~--------------a~~~~~~~~~~pk--~~d-g~~~~~~--~   97 (281)
                      ..+.+|.|...+|.||||++|+|++|||+.|.|..++              ..++.++.+....  +.. .+.+++.  .
T Consensus         9 ~~r~~w~pg~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   88 (243)
T 3pl9_A            9 TDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFG   88 (243)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             cccccccCCCCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhh
Confidence            4689999999999999999999999999999988763              2233333111111  111 1233344  3


Q ss_pred             cCccchhhhhHHHHHHHHHHHHHhhhhhcCcchhhh----c--c-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcc
Q 023481           98 FGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQ----L--N-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKF  170 (281)
Q Consensus        98 fGf~r~aEl~nGR~AMLG~~g~lv~E~~tg~gil~q----l--~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f  170 (281)
                      +.|+|++|++||||||||++|++++|+++|..+..-    +  + ...+.+..... ..+++++++++|++|.+...+ .
T Consensus        89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i-~~l~~~qv~lmG~~E~~R~~~-~  166 (243)
T 3pl9_A           89 LQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSM-TTLIWIEVLVIGYIEFQRNAE-L  166 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCH-HHHHHHHHHHHHHHHHHHHSC-C
T ss_pred             hHHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhh-HHHHHHHHHHHHHHHHHhhcc-c
Confidence            678899999999999999999999999876432110    0  0 01122211111 133445567888887532111 0


Q ss_pred             cCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          171 VDEPDEPTGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       171 ~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                       +    +    ....|||+. |||||+.++++.+.++|.+||+||||||+|++|+++||.+||+|+++||..|+.+|..
T Consensus       167 -~----~----~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP~~  235 (243)
T 3pl9_A          167 -D----T----EKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLH  235 (243)
T ss_dssp             -C----T----TTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCSGG
T ss_pred             -C----C----ccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcch
Confidence             0    1    123589996 8999999887888899999999999999999999999999999999999999999963

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=99.97  E-value=1.1e-33  Score=261.57  Aligned_cols=192  Identities=20%  Similarity=0.226  Sum_probs=96.6

Q ss_pred             CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481           38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA  117 (281)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~  117 (281)
                      .+.+|.|..++|.|||++.++|.+|||+.|.++   .  .              +++....+|+|++|++||||||||++
T Consensus        55 ~R~~wlP~~~~P~~L~G~~pGD~GfDPlGl~d~---~--~--------------~~~~~~~~~~r~aEl~hGR~AMLa~~  115 (276)
T 2wsc_3           55 DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDP---E--G--------------TGGFIEPKWLAYGEIINGRYAMLGAV  115 (276)
T ss_dssp             ------------------------------CCC---C--C--------------CCCSSSTTHHHHHHHHHHTTSCCTTT
T ss_pred             CccccCCCCCCcccccCcCCCccCCCccccCCh---H--h--------------hcchhhHHHHHHHHhhcccchhhhHH
Confidence            578999999999999999999999999999211   0  0              11222458999999999999999999


Q ss_pred             HHHhhhhhcCcchhhh------cccc----cCcccccchhHHHHHHHHHHHHHHhhhccCCcccC-C--CCCC-------
Q 023481          118 ASLLGEGITGKGILAQ------LNLE----TGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD-E--PDEP-------  177 (281)
Q Consensus       118 g~lv~E~~tg~gil~q------l~~~----~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~-~--~~~p-------  177 (281)
                      |++++|++++.|++..      +...    .|...+...+..++++++.+++++|..... .+.. +  ..++       
T Consensus       116 G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~-~~~~pG~~g~~p~~g~~~~  194 (276)
T 2wsc_3          116 GAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQ-DWAKPGSMGKQYFLGLEKG  194 (276)
T ss_dssp             STTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTT-GGGSCCCCCCCCSSCSCCC
T ss_pred             HHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhc-ccccCCccccccccccccc
Confidence            9999999998886521      1100    111112122222334455677887643211 1100 0  0000       


Q ss_pred             CCCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          178 TGLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       178 ~G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      .....+..||||.+|||+|+.++++++.++|.+||+||||||+||+++++||.+||+|+++||..|+.+|..
T Consensus       195 ~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~  266 (276)
T 2wsc_3          195 LGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVH  266 (276)
T ss_dssp             CCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC----------
T ss_pred             ccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCccc
Confidence            011224579999889999999877788899999999999999999999999999999999999999999964

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.97  E-value=3.2e-32  Score=246.50  Aligned_cols=180  Identities=24%  Similarity=0.298  Sum_probs=129.1

Q ss_pred             CCCccCCC--CCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHH
Q 023481           38 SHLMFNPL--SNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIG  115 (281)
Q Consensus        38 ~~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG  115 (281)
                      .+.+|.|.  .++|.||||+.++|.+|||+.|.+.                        ...+.|+|++|++||||||||
T Consensus        20 ~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d------------------------~e~~~r~ReaELkHGR~AMLA   75 (232)
T 2bhw_A           20 DRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSAD------------------------PETFSKNRELEVIHSRWAMLG   75 (232)
T ss_dssp             TCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCS------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCccccCCccccCCcCCCCCCCCCCcCCCC------------------------HHHHHHHHHHHHhccchHHHh
Confidence            45667653  3889999999999999999998421                        024778999999999999999


Q ss_pred             HHHHHhhhhhcCcchh----hhc--cc---------ccCccc-ccch-hHHHHHHHHHHHHHHhhhccCCcccCCCCCCC
Q 023481          116 FAASLLGEGITGKGIL----AQL--NL---------ETGIPI-YEAE-PLLLFFILFTLLGAIGALGDRGKFVDEPDEPT  178 (281)
Q Consensus       116 ~~g~lv~E~~tg~gil----~ql--~~---------~~G~p~-~~~~-pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~  178 (281)
                      ++|++++|+++..|+.    .++  +.         ..+.|. ...+ ...++++++.+++++|.....+.       +.
T Consensus        76 ~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g-------~~  148 (232)
T 2bhw_A           76 ALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG-------PL  148 (232)
T ss_dssp             HHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEE-------TT
T ss_pred             hhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccC-------cc
Confidence            9999999987643321    011  00         011121 1111 12233445556777764321110       11


Q ss_pred             CCCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          179 GLGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       179 G~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      +...+..|||+. |||+|+.++++++..+|.+|++||||||+||+++++||.+||+|+++|+..|+++|..
T Consensus       149 g~~~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~  218 (232)
T 2bhw_A          149 GEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN  218 (232)
T ss_dssp             EECSSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTT
T ss_pred             cccccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHH
Confidence            111223689996 7999998776778899999999999999999999999999999999999999999964

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.97  E-value=6.3e-32  Score=249.17  Aligned_cols=185  Identities=22%  Similarity=0.260  Sum_probs=106.9

Q ss_pred             CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481           38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA  117 (281)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~  117 (281)
                      .+..|.|..++|.|+|++.++|.+|||+.|.+.                        ...+.|+|++|++||||||||++
T Consensus        63 ~r~~wlpg~~~P~~L~G~~pGD~GfDPlGL~~d------------------------~e~~~~~r~aElkHGR~AMLA~~  118 (269)
T 2wsc_2           63 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSD------------------------PESLRWNVQAELVHSRWAMLGAA  118 (269)
T ss_dssp             -------------------------------CC------------------------CSCCTTTHHHHHHTHHHHTTTTH
T ss_pred             CcccccCCCCCcccccCcCCCCCCCCccccCCC------------------------HHHHHHHHHHHHhcchHHHHHHH
Confidence            578899999999999999999999999998310                        02357899999999999999999


Q ss_pred             HHHhhhhhcCcchhhhcc-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcccC-C--CCCC--CC---CCCCcCCCC
Q 023481          118 ASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD-E--PDEP--TG---LGGAVIPPG  188 (281)
Q Consensus       118 g~lv~E~~tg~gil~ql~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~-~--~~~p--~G---~~~~~~~PG  188 (281)
                      |++++|++++.|+..... ...|...+...+..++++++.+++++|...... +.. +  ..++  .+   ...+..|||
T Consensus       119 G~l~~E~l~~~G~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~-~~~pG~~g~~p~f~~~~~~~~d~~~PG  197 (269)
T 2wsc_2          119 GIFIPEFLTKLGILNTPSWYTAGEQEYFTDTTTLFIVELVFIGWAEGRRWAD-ILNPGCVNTDPIFPNNKLTGTDVGYPG  197 (269)
T ss_dssp             HHHHHHHHCCTTSSSCCCCCSTTSSSSCCCTTSHHHHHTTHHHHHHHHHHTT-SSCCCCCSSSCCSSSCCSSTTSCSCTT
T ss_pred             HhHhHHhhccCCcccCccccccchhhhhcchHHHHHHHHHHHHHHHHHHHhc-cccCCccccccccccccccccccCCCC
Confidence            999999999877652111 112322222222223344455788887532111 100 0  0000  00   112346999


Q ss_pred             CCcCCCCCCCC-CCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhH-hhhCCC
Q 023481          189 KGLRSALGLKE-GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLN-IETGIP  247 (281)
Q Consensus       189 d~ffDPLGL~~-~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~-~~~~~P  247 (281)
                      +..|||||+.+ +++++.+++.+||+|||||||||+++++||.+||+|+++||. .|+.+|
T Consensus       198 ~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP  258 (269)
T 2wsc_2          198 GLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP  258 (269)
T ss_dssp             CSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS
T ss_pred             CcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc
Confidence            98789999975 455788999999999999999999999999999999999999 999999

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.96  E-value=1e-31  Score=245.66  Aligned_cols=181  Identities=25%  Similarity=0.252  Sum_probs=102.6

Q ss_pred             CCCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHH
Q 023481           38 SHLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFA  117 (281)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~  117 (281)
                      .+..|.|..+.|.|+|++.|+|.+|||+.|.+.                        ...+.|+|++|++||||||+|++
T Consensus        52 ~r~~~~pg~~~p~~l~g~~pGd~gfDPlGl~~d------------------------~e~~~~~r~aEl~hGR~AMla~~  107 (251)
T 2wsc_4           52 KKGEWLPGLASPGYLTGSLPGDNGFDPLGLAED------------------------PENLRWFVQAELVNGRWAMLGVA  107 (251)
T ss_dssp             -----------------------------CCCS------------------------CCCTTTTHHHHHHHTHHHHHHHT
T ss_pred             hhhhccCCCCCccccCCCcCCCCCCCccccCCC------------------------hHHHHHHHHHHHhccchHHHHHH
Confidence            478899988999999999999999999998421                        12468899999999999999999


Q ss_pred             HHHhhhhhcCcchhhhcc-cccCcccccchhHHHHHHHHHHHHHHhhhccCCcccC-C--CCCC--CC---CCCCcCCCC
Q 023481          118 ASLLGEGITGKGILAQLN-LETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVD-E--PDEP--TG---LGGAVIPPG  188 (281)
Q Consensus       118 g~lv~E~~tg~gil~ql~-~~~G~p~~~~~pl~l~~v~f~llgai~~l~~~~~f~~-~--~~~p--~G---~~~~~~~PG  188 (281)
                      |++++|++++.|+..... ...|...+...+..++++++++++++|...... +.. +  ..+|  .+   ...+..|||
T Consensus       108 G~~~~e~~~~~g~~~~p~w~~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~-~~~pG~~g~~p~f~~~~~~~~d~~yPG  186 (251)
T 2wsc_4          108 GMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQD-IKNPGSVNQDPIFKQYSLPAGEVGYPG  186 (251)
T ss_dssp             TSSTTSSSCCSCSSCCCCCSCCCSSSCSSCSSCTTTTHHHHHHTTTHHHHHH-HSSCCCTTCCSSSCSSSSCCHHHHSSC
T ss_pred             HHHHHHHhcCCCccCCccccccchHhhhccchHHHHHHHHHHHHHHHHHhhc-ccCCCcccccccccccccccccccCCC
Confidence            999999999988763211 112322221111112223344677776421100 000 0  0001  01   011346899


Q ss_pred             CCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          189 KGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       189 d~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      |. |||||+.+    +..+|.+||+|||| ||||+|+++||.+||++|++||..|+.+|..
T Consensus       187 g~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~  241 (251)
T 2wsc_4          187 GI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWH  241 (251)
T ss_dssp             CT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCC
T ss_pred             Cc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhh
Confidence            96 89999975    56789999999999 9999999999999999999999999999963

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=99.96  E-value=4.3e-31  Score=240.35  Aligned_cols=176  Identities=19%  Similarity=0.201  Sum_probs=114.3

Q ss_pred             CCccCCCCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHHHH
Q 023481           39 HLMFNPLSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAA  118 (281)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~~g  118 (281)
                      +..|.|...+|.|+|++.|+|.+|||+.|.+.                        ...+.|+|++|++||||||+|++|
T Consensus        45 ~~~w~P~~~~P~~L~G~~pgd~gfDPlgl~~~------------------------~~~~~~~r~~El~hgR~AMla~~G  100 (241)
T 2wsc_1           45 AAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEV------------------------PANLERYKESELIHCRWAMLAVPG  100 (241)
T ss_dssp             ----------------CTTSSCCCSSTTTTTT------------------------TTHHHHSHHHHHHHHHHHTTTSTT
T ss_pred             ccccCCCCCCcccccCCCCCcCCcCccccCCC------------------------HHHHHHHHHHHHhhchhHHhhhhc
Confidence            35699999999999999999999999987421                        124678999999999999999999


Q ss_pred             HHhhhhhcCcchhh---hcccccCccccc------chhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCCCCCCcCCCCC
Q 023481          119 SLLGEGITGKGILA---QLNLETGIPIYE------AEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGK  189 (281)
Q Consensus       119 ~lv~E~~tg~gil~---ql~~~~G~p~~~------~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G~~~~~~~PGd  189 (281)
                      ++++|+++..++..   +.....|...+.      .....++++.+.+++++|.+..    ...  ++    ....|||+
T Consensus       101 ~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~----~~~--~~----~~~~yPgg  170 (241)
T 2wsc_1          101 ILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRS----MEK--DP----EKKKYPGG  170 (241)
T ss_dssp             SSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHT----SCC--SS----CCSSSCSC
T ss_pred             ccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHH----hcc--CC----CCCCCCCC
Confidence            99999876432221   001111111111      1111233455666777764321    110  01    12358998


Q ss_pred             CcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhH-HhcCcChHHHhHhhhCCCcc
Q 023481          190 GLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGE-IITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       190 ~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E-~iTG~g~l~~l~~~~~~P~~  249 (281)
                       +|||+|++++++++..+|.+||+||||||+|++|+++|| .+||+|+++||..|+.+|..
T Consensus       171 -~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~  230 (241)
T 2wsc_1          171 -AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH  230 (241)
T ss_dssp             -CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC
T ss_pred             -cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccc
Confidence             579999998877888999999999999999999999999 58999999999999999964

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=99.18  E-value=2.1e-12  Score=118.10  Aligned_cols=53  Identities=34%  Similarity=0.423  Sum_probs=38.9

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL  237 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l  237 (281)
                      .+|||++||||||+++++.+++++.+||+|||+||+|++|++++|++++.|++
T Consensus        69 ~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~  121 (251)
T 2wsc_4           69 SLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII  121 (251)
T ss_dssp             ------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred             CcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence            47999999999999888899999999999999999999999999999998876

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=99.14  E-value=6.5e-12  Score=115.89  Aligned_cols=53  Identities=32%  Similarity=0.312  Sum_probs=36.3

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL  237 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l  237 (281)
                      ..|||++||||||+++++.+++++.+||+|||+||+|++|++++|++++.|++
T Consensus        80 ~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2           80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             --------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             cCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            47999999999998888899999999999999999999999999999987754

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=99.08  E-value=2.5e-11  Score=109.79  Aligned_cols=49  Identities=24%  Similarity=0.256  Sum_probs=45.1

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcC
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG  233 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG  233 (281)
                      ..|||.+||||||+++++.+++++.+||+|||+||+|++|++++|+++.
T Consensus        39 ~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~   87 (232)
T 2bhw_A           39 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR   87 (232)
T ss_dssp             CSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence            4799999999999987778999999999999999999999999998764

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=99.03  E-value=4.8e-11  Score=108.62  Aligned_cols=63  Identities=25%  Similarity=0.192  Sum_probs=28.9

Q ss_pred             ccCCCCCCCCCCCCcCCCCCCcCCCCCCCCCCC-------------------------------------------cccc
Q 023481          170 FVDEPDEPTGLGGAVIPPGKGLRSALGLKEGGP-------------------------------------------IFGF  206 (281)
Q Consensus       170 f~~~~~~p~G~~~~~~~PGd~ffDPLGL~~~~~-------------------------------------------~f~~  206 (281)
                      |..+...|..+++  ..|||++||||||+++++                                           .+++
T Consensus        14 w~pg~~~P~~LdG--slpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r   91 (243)
T 3pl9_A           14 WYPGAKAPEYLDG--SLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQR   91 (243)
T ss_dssp             ----------------------------------------------------------------------------CCHH
T ss_pred             ccCCCCCcccccC--CCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHH
Confidence            4333333444433  379999999999987754                                           3678


Q ss_pred             cchhhhhhhhHHHHHHHHHHHhHHhcCc
Q 023481          207 TKSNELFVGRLAQLGIAFSLIGEIITGK  234 (281)
Q Consensus       207 tk~aEl~NGRLAMlG~~g~lv~E~iTG~  234 (281)
                      ++.+||+|||+||+|++|++++|+.+|-
T Consensus        92 ~ReaELkHGRwAMLAvlG~lvpE~l~g~  119 (243)
T 3pl9_A           92 FRECELIHGRWAMLATLGALTVEGLTGI  119 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence            8999999999999999999999998763

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=98.92  E-value=9.6e-11  Score=106.60  Aligned_cols=49  Identities=29%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcC
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITG  233 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG  233 (281)
                      ..|||.+|||+||+++++.+++++.+||+|||+||+|++|++++|.++.
T Consensus        61 ~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~  109 (241)
T 2wsc_1           61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY  109 (241)
T ss_dssp             CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred             CCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccC
Confidence            4799999999999988888999999999999999999999999998753

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.91  E-value=2.7e-11  Score=112.13  Aligned_cols=52  Identities=27%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             CCCCCCcCCCCCCCCCCCcc------cccchhhhhhhhHHHHHHHHHHHhHHhcCcChH
Q 023481          185 IPPGKGLRSALGLKEGGPIF------GFTKSNELFVGRLAQLGIAFSLIGEIITGKGAL  237 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f------~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l  237 (281)
                      ..|||++|||||| .+++.+      ++++.+|++|||+||+|++|++++|++++.|++
T Consensus        72 ~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           72 SLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             --------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             cCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            3699999999999 455678      899999999999999999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	281
d1rwta_	218	f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi	2e-05

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 11/161 (6%)

Query: 90  GIFGTSGGFGFTKQNELFVGRVAMIGFAASLLGEGITGKGILA----------QLNLETG 139
           G+      F   ++ E+   R AM+G    +  E +   G+            Q+  E G
Sbjct: 37  GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG 96

Query: 140 IPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTGLGGAVIPPGKGLRSALGLKE 199
           +       L+    +  +      L    +       P G     + PG      LGL +
Sbjct: 97  LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDP-LGLAD 155

Query: 200 GGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQL 240
               F   K  E+  GRLA   +    +  I+TGKG L  L
Sbjct: 156 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 196

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	281
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	100.0
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	99.19

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=6.7e-35  Score=258.61  Aligned_cols=179  Identities=23%  Similarity=0.294  Sum_probs=124.6

Q ss_pred             CCccCC--CCCchhhhhhcCCCCCccceEEeccccccCCCCCCCcCCCCcccCCCCCCCCccCccchhhhhHHHHHHHHH
Q 023481           39 HLMFNP--LSNESLTAAAASSSSKAFSTVALFKSKTKAPPKTKKVESKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGF  116 (281)
Q Consensus        39 ~~~~~~--~~~~~~~~~~~~~~~~~~~t~~~~k~~~~a~~~~~~~~~~pk~~dg~~~~~~~fGf~r~aEl~nGR~AMLG~  116 (281)
                      +..|.|  ..+.|.||||++++|.+|||+.|.+..                        ..+.|+|++||+||||||||+
T Consensus         8 r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~------------------------~~~~~~ReaELKHGR~AMLA~   63 (218)
T d1rwta_           8 RVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADP------------------------ETFAKNRELEVIHCRWAMLGA   63 (218)
T ss_dssp             CCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSH------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCccccCCCcccCCCCCCCCCcCCcccCCCH------------------------HHHHHHHHHHHhhceehHhhh
Confidence            455877  346799999999999999999985321                        136789999999999999999


Q ss_pred             HHHHhhhhhcCcchh-------h---hccccc-----Ccc-c-ccchhHHHHHHHHHHHHHHhhhccCCcccCCCCCCCC
Q 023481          117 AASLLGEGITGKGIL-------A---QLNLET-----GIP-I-YEAEPLLLFFILFTLLGAIGALGDRGKFVDEPDEPTG  179 (281)
Q Consensus       117 ~g~lv~E~~tg~gil-------~---ql~~~~-----G~p-~-~~~~pl~l~~v~f~llgai~~l~~~~~f~~~~~~p~G  179 (281)
                      +|++++|+++..+..       .   +.....     +.+ . .....+..+.+.+.+++.++.+.....       +.+
T Consensus        64 vG~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-------~~~  136 (218)
T d1rwta_          64 LGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGG-------PLG  136 (218)
T ss_dssp             HHHHHHHHHHTTTCCCSCCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCB-------TTB
T ss_pred             cceeehhhhccCCCCCCCcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCC-------Ccc
Confidence            999999987643221       0   000000     001 0 011111222334444555543321111       111


Q ss_pred             CCCCcCCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCcChHHHhHhhhCCCcc
Q 023481          180 LGGAVIPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIN  249 (281)
Q Consensus       180 ~~~~~~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~g~l~~l~~~~~~P~~  249 (281)
                      ...+..||++ .|||+|+.++++++..+|.+||+||||||||++|+++||.+||++|++||..|+.+|+.
T Consensus       137 ~~~~~~~~~g-~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~  205 (218)
T d1rwta_         137 EVVDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN  205 (218)
T ss_dssp             CCSSSSCCCG-GGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTT
T ss_pred             cccCCCCCCC-CccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchh
Confidence            1122346766 57999998877778889999999999999999999999999999999999999999974

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.19  E-value=3.4e-12  Score=111.71  Aligned_cols=50  Identities=22%  Similarity=0.221  Sum_probs=45.4

Q ss_pred             CCCCCCcCCCCCCCCCCCcccccchhhhhhhhHHHHHHHHHHHhHHhcCc
Q 023481          185 IPPGKGLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLIGEIITGK  234 (281)
Q Consensus       185 ~~PGd~ffDPLGL~~~~~~f~~tk~aEl~NGRLAMlG~~g~lv~E~iTG~  234 (281)
                      ..|||.+||||||+++++.+++++.+||+|||+||+|++|++++|..+..
T Consensus        26 s~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~   75 (218)
T d1rwta_          26 EFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN   75 (218)
T ss_dssp             CSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccC
Confidence            47999999999999877789999999999999999999999999987543