Citrus Sinensis ID: 023490
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 281 | 2.2.26 [Sep-21-2011] | |||||||
| Q05758 | 591 | Ketol-acid reductoisomera | yes | no | 0.765 | 0.363 | 0.855 | 1e-105 | |
| Q01292 | 595 | Ketol-acid reductoisomera | N/A | no | 0.871 | 0.411 | 0.728 | 1e-104 | |
| O82043 | 581 | Ketol-acid reductoisomera | N/A | no | 0.886 | 0.428 | 0.755 | 1e-103 | |
| Q65XK0 | 578 | Ketol-acid reductoisomera | yes | no | 0.697 | 0.339 | 0.882 | 1e-98 | |
| Q17X66 | 330 | Ketol-acid reductoisomera | yes | no | 0.448 | 0.381 | 0.375 | 2e-17 | |
| P78827 | 404 | Probable ketol-acid reduc | yes | no | 0.583 | 0.405 | 0.350 | 2e-17 | |
| B8E2W8 | 332 | Ketol-acid reductoisomera | yes | no | 0.480 | 0.406 | 0.387 | 3e-17 | |
| P38674 | 402 | Ketol-acid reductoisomera | N/A | no | 0.601 | 0.420 | 0.355 | 3e-17 | |
| A9BGP6 | 330 | Ketol-acid reductoisomera | yes | no | 0.480 | 0.409 | 0.385 | 4e-17 | |
| B5YEF3 | 332 | Ketol-acid reductoisomera | yes | no | 0.480 | 0.406 | 0.380 | 5e-17 |
| >sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/215 (85%), Positives = 198/215 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 275
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6 |
| >sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/265 (72%), Positives = 216/265 (81%), Gaps = 20/265 (7%)
Query: 14 KFSPSPSSETLKGAFKHLNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASET 64
K SP PS+ LNL F SST K+ R+LK R G GSAL AQM S
Sbjct: 26 KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76
Query: 65 ALKTP--FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQ 122
++ TP DF++SVFKK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77 SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136
Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196
Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242
LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256
Query: 243 SVRRLYVQGKEINGAGINSSFAVHQ 267
SVRRLYVQGKE+NGAGINSSFAVHQ
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQ 281
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/254 (75%), Positives = 209/254 (82%), Gaps = 5/254 (1%)
Query: 18 SPSSETLK----GAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLD 73
S SS+TL +F NL+F + +S+RA ++ GSALGA S P LD
Sbjct: 13 SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSALGATKVSAPPATHPVSLD 71
Query: 74 FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ ++LA +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 72 FETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 131
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQAD
Sbjct: 132 LVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQAD 191
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS +KPNSILGLSHGFLLGHLQSIGLDFPKN VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 192 NYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPKGMGPSVRRLYVQGKE 251
Query: 254 INGAGINSSFAVHQ 267
INGAGINSSF VHQ
Sbjct: 252 INGAGINSSFGVHQ 265
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (922), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 173/196 (88%), Positives = 185/196 (94%)
Query: 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247
Query: 252 KEINGAGINSSFAVHQ 267
KEINGAGINSSFAVHQ
Sbjct: 248 KEINGAGINSSFAVHQ 263
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q17X66|ILVC_HELAH Ketol-acid reductoisomerase OS=Helicobacter acinonychis (strain Sheeba) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 15/141 (10%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
Q+G+IG+G+QG AQA NLRD S + V+VGL +GS S +A+A GF + ++
Sbjct: 20 QVGIIGYGTQGEAQALNLRD------SKVKVRVGLYQGSLSIPKAKAEGF-----EVLEV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E + SD+++ L+ D + EK + +K I+G +HGF + H + F K +G
Sbjct: 69 KELVQKSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSV-HFNQV--SFKKGVG 125
Query: 232 VIAVCPKGMGPSVRRLYVQGK 252
VI V PKG G ++R Y++ K
Sbjct: 126 VILVAPKGPGSALREEYLKNK 146
|
Helicobacter acinonychis (strain Sheeba) (taxid: 382638) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 13/177 (7%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIG 223
TL + E I +++ L+SDAAQ + + KI + L SHGF +
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQVLSEPLFHLCVGL 280
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+Q ++ +GL
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGL 241
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B8E2W8|ILVC_DICTD Ketol-acid reductoisomerase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 81/155 (52%), Gaps = 20/155 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NLRDS I V V +R S+ A G T E I
Sbjct: 20 VTIIGYGSQGRAHALNLRDS------GIKVIVAVRPNGESWKRALEEGMTVEK-----IE 68
Query: 174 ETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ + SD+++ LI D Q Y EK+ ++PN LG +HGF + Q + P + V
Sbjct: 69 DAVQKSDVLMFLIPDTEQPTIYKEKVLPYLRPNQALGFAHGFNIHFSQIVP---PPFLDV 125
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
V PKG GP VR LYV+GK G+ + FAV+Q
Sbjct: 126 FMVAPKGPGPLVRDLYVEGK-----GVPALFAVYQ 155
|
Dictyoglomus turgidum (strain Z-1310 / DSM 6724) (taxid: 515635) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 98/183 (53%), Gaps = 14/183 (7%)
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
+++E R KLL D F + + +IG+GSQG Q NLRD+ + V VG+
Sbjct: 62 HKEEVHERADWPAEKLL-DYFKN-DTLALIGYGSQGHGQGLNLRDN------GLNVIVGV 113
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RK +S+ +A G+ L D+ E IS +V+ L+SDAAQ++ + I +
Sbjct: 114 RKNGKSWEDAIQDGWVP-GKNLFDVDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKT 172
Query: 208 LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
L SHGF ++ P ++ VI V PKG G +VR L+ +G+ GINSSFAV+Q
Sbjct: 173 LYFSHGFSPVFKDLTKVEVPTDVDVILVAPKGSGRTVRSLFREGR-----GINSSFAVYQ 227
Query: 268 VLS 270
++
Sbjct: 228 DVT 230
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 88/161 (54%), Gaps = 26/161 (16%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I V+G+GSQG AQAQNL+DS + V +GL+K S+S A+ GF ++Y
Sbjct: 20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65
Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN 229
ET + D++ +LI D Q++ Y+K I + + LG SHGF + Q + PKN
Sbjct: 66 ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQVLS 270
+ V V PK G VRR+Y++GK G+ AVHQ S
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFS 158
|
Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B5YEF3|ILVC_DICT6 Ketol-acid reductoisomerase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 81/155 (52%), Gaps = 20/155 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I +IG+GSQG A A NL+DS + V V +R S+ A G T E I
Sbjct: 20 ITIIGYGSQGRAHALNLKDS------GMKVIVAVRPNGESWKRALEEGMTVEK-----IE 68
Query: 174 ETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ + SD+++ LI D Q Y EK+ ++PN LG +HGF + Q + P + V
Sbjct: 69 DAVQKSDIIMFLIPDTEQPAIYKEKVLPYLRPNQALGFAHGFNIHFSQIVP---PPFVDV 125
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
V PKG GP VR LYV+GK G+ + FAV+Q
Sbjct: 126 FMVAPKGPGPLVRDLYVEGK-----GVPALFAVYQ 155
|
Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) (taxid: 309799) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 281 | ||||||
| 225446579 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.879 | 0.420 | 0.799 | 1e-107 | |
| 295291644 | 587 | ketol-acid reductoisomerase [Catharanthu | 0.839 | 0.402 | 0.809 | 1e-106 | |
| 255568281 | 584 | ketol-acid reductoisomerase, chloroplast | 0.811 | 0.390 | 0.838 | 1e-105 | |
| 224079219 | 589 | predicted protein [Populus trichocarpa] | 0.839 | 0.400 | 0.804 | 1e-104 | |
| 255671795 | 587 | acetohydroxyacid isomeroreductase [Glyci | 0.854 | 0.408 | 0.803 | 1e-103 | |
| 297817174 | 594 | ketol-acid reductoisomerase [Arabidopsis | 0.765 | 0.361 | 0.860 | 1e-103 | |
| 15231092 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.765 | 0.363 | 0.855 | 1e-103 | |
| 288063 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.765 | 0.363 | 0.855 | 1e-103 | |
| 341958461 | 587 | chloroplast acetohydroxy acid isomerored | 0.854 | 0.408 | 0.799 | 1e-103 | |
| 356549858 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.854 | 0.409 | 0.799 | 1e-103 |
| >gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/254 (79%), Positives = 220/254 (86%), Gaps = 7/254 (2%)
Query: 21 SETLKGAFKHL--NLAFFSSTA-KSLRA--LKTTR--GRGSALGAQMASETALKTPFLLD 73
++TLK +L NL F SS A +SLRA L T+ G GSAL A+M S +K P LLD
Sbjct: 19 TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78
Query: 74 FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ +SLA DE+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79 FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258
Query: 254 INGAGINSSFAVHQ 267
+NGAGINSSFAV Q
Sbjct: 259 VNGAGINSSFAVQQ 272
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|295291644|gb|ADF87507.1| ketol-acid reductoisomerase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/242 (80%), Positives = 211/242 (87%), Gaps = 6/242 (2%)
Query: 32 NLAFFSSTAKSL-----RALKTTRGRGSALGAQMASE-TALKTPFLLDFETSVFKKDAIS 85
NL+F SS+ SL RA T GSA+ A+M S A+K P LDFETSVFKK+ I+
Sbjct: 31 NLSFLSSSTPSLKHLAARAASFTTSCGSAVAARMVSTPAAVKPPTNLDFETSVFKKEKIN 90
Query: 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145
LA +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAE KSDI+VK+
Sbjct: 91 LAGHEEYIVRGGRDLFNLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAETKSDILVKI 150
Query: 146 GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205
GLRKGSRSFAEARAAGF+EENGTLGDIYETISGSDLVLLLISDAAQADNYE++FS MKPN
Sbjct: 151 GLRKGSRSFAEARAAGFSEENGTLGDIYETISGSDLVLLLISDAAQADNYEQVFSHMKPN 210
Query: 206 SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
SILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV
Sbjct: 211 SILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 270
Query: 266 HQ 267
HQ
Sbjct: 271 HQ 272
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/229 (83%), Positives = 207/229 (90%), Gaps = 1/229 (0%)
Query: 40 AKSLRALKTTRGRGSALGA-QMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGR 98
+KS ++L+ G GSA+GA M S A+K LDFET+VFKK+ ISLA DE+IVRGGR
Sbjct: 40 SKSFKSLRANGGGGSAVGACSMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGR 99
Query: 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158
DLFKLLPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR
Sbjct: 100 DLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEAR 159
Query: 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGH 218
+AGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGH
Sbjct: 160 SAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGH 219
Query: 219 LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ
Sbjct: 220 LQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 268
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/240 (80%), Positives = 210/240 (87%), Gaps = 4/240 (1%)
Query: 32 NLAFFSS-TAKSLRALKTTRGR--GSALGAQMASETALKTPFL-LDFETSVFKKDAISLA 87
NL F SS ++K+ + LK + G G LGA+M S P + LDFETSVFKK+ +SLA
Sbjct: 34 NLGFSSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLA 93
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DE+IVRGGRDLF LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GL
Sbjct: 94 GHDEYIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGL 153
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSI
Sbjct: 154 RKGSRSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSI 213
Query: 208 LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQ
Sbjct: 214 LGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQ 273
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255671795|gb|ACU26530.1| acetohydroxyacid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/244 (80%), Positives = 213/244 (87%), Gaps = 4/244 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SLR + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 267
Query: 264 AVHQ 267
AVHQ
Sbjct: 268 AVHQ 271
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/215 (86%), Positives = 197/215 (91%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 64 GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 278
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/215 (85%), Positives = 198/215 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 275
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|288063|emb|CAA48253.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/215 (85%), Positives = 198/215 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 275
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/244 (79%), Positives = 213/244 (87%), Gaps = 4/244 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SLR + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267
Query: 264 AVHQ 267
AVHQ
Sbjct: 268 AVHQ 271
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/244 (79%), Positives = 213/244 (87%), Gaps = 4/244 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SLR + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267
Query: 264 AVHQ 267
AVHQ
Sbjct: 268 AVHQ 271
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 281 | ||||||
| TAIR|locus:2076371 | 591 | AT3G58610 [Arabidopsis thalian | 0.839 | 0.399 | 0.762 | 5.1e-90 | |
| UNIPROTKB|Q01292 | 595 | AHRI "Ketol-acid reductoisomer | 0.843 | 0.398 | 0.709 | 1.1e-85 | |
| UNIPROTKB|Q65XK0 | 578 | LOC_Os05g49800 "Ketol-acid red | 0.768 | 0.373 | 0.764 | 2e-81 | |
| POMBASE|SPBC56F2.12 | 404 | ilv5 "acetohydroxyacid reducto | 0.583 | 0.405 | 0.322 | 8.6e-15 | |
| TIGR_CMR|CHY_0519 | 330 | CHY_0519 "ketol-acid reductois | 0.462 | 0.393 | 0.351 | 9.8e-13 | |
| ASPGD|ASPL0000041782 | 400 | AN2526 [Emericella nidulans (t | 0.608 | 0.427 | 0.304 | 2.9e-12 | |
| CGD|CAL0000685 | 400 | ILV5 [Candida albicans (taxid: | 0.736 | 0.517 | 0.314 | 8.7e-12 | |
| UNIPROTKB|G4MW52 | 400 | MGG_15774 "Ketol-acid reductoi | 0.505 | 0.355 | 0.311 | 3.2e-11 | |
| SGD|S000004347 | 395 | ILV5 "Acetohydroxyacid reducto | 0.533 | 0.379 | 0.323 | 6.8e-10 | |
| UNIPROTKB|P65149 | 333 | ilvC "Ketol-acid reductoisomer | 0.451 | 0.381 | 0.340 | 1e-08 |
| TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 183/240 (76%), Positives = 201/240 (83%)
Query: 32 NLAFFSSTAKSLRALKTT-RGRG---SALGAQMASETALKTPFLLDFETSVFKKDAISLA 87
N+ F SS++KSLR+L T G G S+L A+M S +A+K P LDFETSVFKK+ +SLA
Sbjct: 36 NIGFLSSSSKSLRSLTATVAGNGATGSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLA 95
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
+E+IVRGGRDLFK LPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GL
Sbjct: 96 GYEEYIVRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGL 155
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSF EARAAGFTEE+GTLGDI+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI
Sbjct: 156 RKGSRSFEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSI 215
Query: 208 XXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
QS GLDFPKNI V+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 216 LGLSHGFLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 275
|
|
| UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 176/248 (70%), Positives = 198/248 (79%)
Query: 31 LNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASETALKTPFL--LDFETSVF 79
LNL F SST K+ R+LK R G GSAL AQM S ++ TP DF++SVF
Sbjct: 34 LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSINTPSATTFDFDSSVF 93
Query: 80 KKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139
KK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQAQNL+DSL EAKS
Sbjct: 94 KKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKS 153
Query: 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199
D+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLISD+AQADNYEK+F
Sbjct: 154 DVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVF 213
Query: 200 SCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259
S MKPNSI QS+G DFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGI
Sbjct: 214 SHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGI 273
Query: 260 NSSFAVHQ 267
NSSFAVHQ
Sbjct: 274 NSSFAVHQ 281
|
|
| UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 166/217 (76%), Positives = 182/217 (83%)
Query: 52 RGSALGAQMASETALKTPF-LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNG 110
R A+ A +A+ A+ LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF G
Sbjct: 47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct: 107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNI 230
DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI
Sbjct: 167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ
Sbjct: 227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 263
|
|
| POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 194 (73.4 bits), Expect = 8.6e-15, P = 8.6e-15
Identities = 57/177 (32%), Positives = 85/177 (48%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG 223
TL + E I +++ L+SDAAQ + + KI +
Sbjct: 131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQVLSEPLFHLCVGL 280
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+Q ++ +GL
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGL 241
|
|
| TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 51/145 (35%), Positives = 75/145 (51%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I +IG+GSQG AQAQNL+DS + V VGL K S+S +A A GFT + +
Sbjct: 19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIG 231
E +D++ +L+ D Q + Y +KI +KP Q + P ++
Sbjct: 68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124
Query: 232 VIAVCPKGMGPSVRRLYVQGKEING 256
V V PK G VRR+Y++GK + G
Sbjct: 125 VFLVAPKSPGHLVRRMYLEGKGVPG 149
|
|
| ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 56/184 (30%), Positives = 87/184 (47%)
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
IS A+ E + + L + F + + +IG+GSQG Q NLRD + V
Sbjct: 55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
VG+RK S+ EA G+ L ++ E + +V+ L+SDAAQ++ + + +
Sbjct: 108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166
Query: 204 PNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
+ +D P ++ VI V PKG G +VR L+ +G+ GINSS
Sbjct: 167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221
Query: 264 AVHQ 267
AV Q
Sbjct: 222 AVFQ 225
|
|
| CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 73/232 (31%), Positives = 110/232 (47%)
Query: 38 STAKSLRALKTTRGRGSALGAQMASETALK--TPFLLDFETSVFKKDAISLANRDEFIVR 95
+TAK+ + +T +A A+ +A K TP TS+ I+ +E +V
Sbjct: 14 ATAKATLSKRTFSLLANATTRYTAASSAAKAMTPI-----TSIRGVKTINFGGTEE-VVH 67
Query: 96 GGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154
D K L D F + +IG+GSQG Q NLRD+ + V +G+RKGS S+
Sbjct: 68 ERADWPKERLLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKGS-SW 119
Query: 155 AEARAAGFTE-ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXX 213
A G+ EN L ++ E IS +++ L+SDAAQ++ + I +
Sbjct: 120 EAAVEDGWVPGEN--LFEVDEAISRGTIIMDLLSDAAQSETWFHIKPQLTEGKTLYFSHG 177
Query: 214 XXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
++ P NI VI PKG G +VR L+ +G+ GINSS+AV
Sbjct: 178 FSPVFKDLTHVEPPSNIDVILAAPKGSGRTVRSLFKEGR-----GINSSYAV 224
|
|
| UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 48/154 (31%), Positives = 79/154 (51%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG Q NLRD+ + V +G+RK +S+ +A G+ L ++
Sbjct: 84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVI 233
E IS +++ L+SDAAQ++ + + + ++ P ++ VI
Sbjct: 137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196
Query: 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
PKG G +VR L+ +G+ GINSSFAV+Q
Sbjct: 197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQ 225
|
|
| SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 53/164 (32%), Positives = 79/164 (48%)
Query: 102 KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161
KLL D F + +IG+GSQG Q NLRD+ + V +G+RK S+ A G
Sbjct: 70 KLL-DYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDG 121
Query: 162 FTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQS 221
+ L + + I V+ L+SDAAQ++ + I +
Sbjct: 122 WVPGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDL 180
Query: 222 IGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
++ PK++ VI V PKG G +VR L+ +G+ GINSS+AV
Sbjct: 181 THVEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAV 219
|
|
| UNIPROTKB|P65149 ilvC "Ketol-acid reductoisomerase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 49/144 (34%), Positives = 72/144 (50%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++GVIG+GSQG A + +LRDS + V+VGL++GSRS + G +
Sbjct: 16 KVGVIGYGSQGHAHSLSLRDS------GVQVRVGLKQGSRSRPKVEEQGLDVDTPA---- 65
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSC-MKPNSIXXXXXXXXXXXXQSIGL-DFPKNI 230
E +D+V++L D AQA+ IF+ ++PN GL P ++
Sbjct: 66 -EVAKWADVVMVLAPDTAQAE----IFAGDIEPNLKPGDALFFGHGLNVHFGLIKPPADV 120
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEI 254
V V PKG G VRR +V GK +
Sbjct: 121 AVAMVAPKGPGHLVRRQFVDGKGV 144
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q05758 | ILV5_ARATH | 1, ., 1, ., 1, ., 8, 6 | 0.8558 | 0.7651 | 0.3637 | yes | no |
| Q65XK0 | ILV5_ORYSJ | 1, ., 1, ., 1, ., 8, 6 | 0.8826 | 0.6975 | 0.3391 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00018719001 | SubName- Full=Putative uncharacterized protein (Chromosome chr12 scaffold_18, whole genome shotgun sequence); (588 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00037861001 | RecName- Full=Acetolactate synthase; EC=2.2.1.6; (657 aa) | • | • | • | • | • | 0.982 | ||||
| GSVIVG00029877001 | RecName- Full=Acetolactate synthase; EC=2.2.1.6; (616 aa) | • | • | • | • | • | 0.979 | ||||
| GSVIVG00020486001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa) | • | • | • | • | • | 0.963 | ||||
| GSVIVG00034729001 | SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (393 aa) | • | • | • | 0.960 | ||||||
| GSVIVG00012144001 | SubName- Full=Chromosome undetermined scaffold_351, whole genome shotgun sequence; (421 aa) | • | • | • | 0.958 | ||||||
| GSVIVG00020487001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (72 aa) | • | • | 0.917 | |||||||
| GSVIVG00005682001 | SubName- Full=Chromosome chr5 scaffold_156, whole genome shotgun sequence; (447 aa) | • | • | • | 0.857 | ||||||
| GSVIVG00026591001 | RecName- Full=3-isopropylmalate dehydrogenase; EC=1.1.1.85;; Catalyzes the oxidation of 3-carbo [...] (405 aa) | • | • | • | 0.705 | ||||||
| GSVIVG00004313001 | SubName- Full=Chromosome undetermined scaffold_656, whole genome shotgun sequence; (463 aa) | • | • | • | • | 0.697 | |||||
| GSVIVG00010385001 | SubName- Full=Chromosome chr16 scaffold_258, whole genome shotgun sequence; (866 aa) | • | • | • | • | 0.634 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 281 | |||
| COG0059 | 338 | COG0059, IlvC, Ketol-acid reductoisomerase [Amino | 7e-36 | |
| pfam07991 | 165 | pfam07991, IlvN, Acetohydroxy acid isomeroreductas | 1e-35 | |
| PRK05479 | 330 | PRK05479, PRK05479, ketol-acid reductoisomerase; P | 4e-32 | |
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 2e-31 | |
| PRK13403 | 335 | PRK13403, PRK13403, ketol-acid reductoisomerase; P | 1e-14 | |
| PRK05225 | 487 | PRK05225, PRK05225, ketol-acid reductoisomerase; V | 4e-14 |
| >gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 7e-36
Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 26/159 (16%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI---GLDFPK 228
E +D+V++L+ D Q + YEK I +K + LG +HGF +I + PK
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGF------NIHFGLIVPPK 122
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
++ VI V PKG G VRR Y +G G+ + AVHQ
Sbjct: 123 DVDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQ 156
|
Length = 338 |
| >gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 1e-35
Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 20/156 (12%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
VI V PKG G VRR Y +G G+ + AVHQ
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQ 142
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165 |
| >gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-32
Identities = 59/159 (37%), Positives = 86/159 (54%), Gaps = 26/159 (16%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI--GL-DFPK 228
E +D++++L+ D QA+ YE+ I +K + L +HGF +I G P
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGF------NIHFGQIVPPA 121
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
++ VI V PKG G VRR Y +G G+ AVHQ
Sbjct: 122 DVDVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQ 155
|
Length = 330 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-31
Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 20/156 (12%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS +++V GLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS----GLNVIV--GLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
V+ V PKG G VR Y +G G+ + AV Q
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQ 141
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
| >gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (176), Expect = 1e-14
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 21/167 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGF-----EVMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQVLSEPLFHLCVG 279
V PK G VRR++ +G G+ + AVHQ + H+ +
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALA 165
|
Length = 335 |
| >gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 4e-14
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266
V+ V PK G VR Y + G G+ + AVH
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVH 177
|
Length = 487 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 100.0 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 100.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.97 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.97 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.75 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 99.75 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 99.75 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.72 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.71 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 99.7 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 99.68 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 99.65 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.65 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 99.65 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.64 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.64 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.64 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.64 | |
| PLN02928 | 347 | oxidoreductase family protein | 99.62 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.62 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.61 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 99.6 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.58 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 99.58 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.58 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.56 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.56 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.55 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.54 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 99.53 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.53 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.52 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 99.51 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.5 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.5 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.49 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.48 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.47 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.47 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.46 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.44 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.41 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.39 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 99.39 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.37 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.36 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.35 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.35 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.34 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.34 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 99.34 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.31 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.31 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.29 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.26 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.22 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.2 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.19 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.18 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.17 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.16 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.16 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.14 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.14 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.14 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.13 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.13 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.12 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.12 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.1 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.1 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.07 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.04 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.03 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.03 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.02 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.99 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.97 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.97 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.95 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.95 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.94 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.94 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.93 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.92 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.91 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.86 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.85 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.84 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.84 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.84 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.83 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.82 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.82 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.81 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.78 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.77 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.75 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.73 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.73 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.73 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.7 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.69 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.69 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.65 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.64 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.58 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.57 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.54 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.49 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.47 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.46 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.45 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.44 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.42 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.38 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.37 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.36 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.31 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.3 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.27 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.27 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.24 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 98.23 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.23 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.19 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.18 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.15 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.15 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.15 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.14 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.11 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.1 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.1 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.09 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.07 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.05 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.05 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.04 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.03 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.0 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.98 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.97 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.96 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.89 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.89 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.87 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.86 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.86 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.85 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 97.85 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.81 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.79 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.74 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.74 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.73 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.71 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.71 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.7 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.68 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.64 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.61 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.6 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.58 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.57 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.56 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.55 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.54 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.54 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.51 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.47 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.46 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.46 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.45 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.44 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.42 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.41 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.41 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.4 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.4 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.4 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.39 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.36 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.34 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.34 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 97.34 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.34 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.33 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.33 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.29 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.28 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.28 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.27 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.26 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 97.24 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.24 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.22 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.21 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.19 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.16 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.15 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.1 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 97.1 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.09 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.08 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.08 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.07 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.07 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.07 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.05 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.04 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.04 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.04 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.02 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 96.96 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.93 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.92 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.92 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.89 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.87 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.86 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.84 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.83 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.83 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.83 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.78 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.76 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.75 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.74 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 96.74 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.72 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.71 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.71 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.7 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.69 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.67 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.67 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.66 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.65 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.65 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.64 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.64 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 96.61 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.61 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.6 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.59 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.59 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.58 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.55 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.54 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.53 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.49 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.48 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.48 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.47 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.46 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 96.45 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.41 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.41 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.4 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.36 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 96.33 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.31 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.3 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.3 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.26 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.2 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.19 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 96.18 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.18 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.14 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.14 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.11 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.98 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 95.94 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.94 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.92 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.92 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.91 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.9 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.88 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.88 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 95.87 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.83 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 95.82 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.73 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.68 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.62 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.62 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.62 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.61 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.53 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.52 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.49 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.46 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 95.46 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.45 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.44 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.37 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.34 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.34 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.31 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 95.31 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.31 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 95.3 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.27 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 95.22 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.2 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.2 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.18 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.15 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.09 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 95.07 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.05 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.05 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 94.96 | |
| PLN02602 | 350 | lactate dehydrogenase | 94.94 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.93 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.92 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 94.89 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.86 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.85 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.85 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.82 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 94.82 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.81 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 94.8 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.76 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 94.74 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.72 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 94.7 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.69 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.69 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 94.67 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 94.66 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.65 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 94.65 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 94.6 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 94.58 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 94.58 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.58 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 94.57 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 94.56 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 94.56 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 94.55 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.48 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 94.44 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 94.42 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.4 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 94.39 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 94.37 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.36 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 94.27 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 94.27 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.26 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 94.24 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 94.21 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 94.2 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.15 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.11 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 94.1 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 94.03 | |
| PLN00106 | 323 | malate dehydrogenase | 94.0 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 94.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 93.92 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.91 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 93.89 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 93.87 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 93.87 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 93.78 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 93.78 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.77 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 93.73 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 93.69 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.68 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 93.66 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 93.64 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 93.58 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 93.54 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 93.54 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 93.53 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 93.51 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 93.51 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.49 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 93.47 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 93.46 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 93.45 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 93.43 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 93.41 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.4 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 93.39 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.39 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 93.19 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 93.18 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 93.17 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 93.15 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 93.13 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.13 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.09 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 93.05 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.05 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 93.04 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 93.01 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 92.91 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 92.89 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 92.83 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 92.77 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 92.77 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 92.65 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 92.63 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 92.62 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 92.59 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.58 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 92.57 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 92.52 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 92.51 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 92.48 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.45 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 92.4 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 92.37 | |
| PRK07411 | 390 | hypothetical protein; Validated | 92.35 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 92.3 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 92.25 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 92.25 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 92.23 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 92.23 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 92.18 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 92.18 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.16 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 92.16 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.1 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 92.08 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 92.07 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 92.07 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.05 | |
| COG0540 | 316 | PyrB Aspartate carbamoyltransferase, catalytic cha | 92.03 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 91.95 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 91.93 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 91.88 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 91.88 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 91.78 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 91.77 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 91.77 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 91.77 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 91.76 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.73 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 91.71 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 91.47 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 91.46 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.46 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 91.42 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 91.41 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 91.33 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.31 | |
| PRK05717 | 255 | oxidoreductase; Validated | 91.23 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.22 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 91.22 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 91.16 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 91.12 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 91.11 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 91.11 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 91.11 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 91.11 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 91.1 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 91.09 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 91.09 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 91.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 90.99 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.99 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.96 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 90.96 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 90.95 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 90.94 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 90.93 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 90.92 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 90.9 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 90.89 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 90.87 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 90.86 | |
| PLN02477 | 410 | glutamate dehydrogenase | 90.86 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 90.84 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 90.83 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 90.78 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 90.65 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.56 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 90.54 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 90.43 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 90.42 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 90.33 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 90.31 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 90.28 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 90.26 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 90.25 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 90.22 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.2 |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=274.89 Aligned_cols=153 Identities=43% Similarity=0.666 Sum_probs=129.5
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+| |+|+|||||++|.++|+|||++ |++|++++|+++++++.|++.||. ..+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999998899999999999 4699999999999999999
Q ss_pred ChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee
Q 023490 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (281)
Q Consensus 188 ~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~ 266 (281)
|..+.++++ ++.++||+|++|+.+|||++.+- .+.+|++++|+.++|++||+.|||+|++| .|+|++||||
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~---~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYG---LIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCT---TS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcC---cccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 89999999999999999998543 35778999999999999999999999998 6999999999
Q ss_pred eCCCcchhhhhhcc
Q 023490 267 QVLSEPLFHLCVGL 280 (281)
Q Consensus 267 ~d~~g~a~~~~~~~ 280 (281)
||+||+|+|+||+|
T Consensus 142 qD~sg~A~~~ala~ 155 (165)
T PF07991_consen 142 QDASGKAKELALAY 155 (165)
T ss_dssp E-SSS-HHHHHHHH
T ss_pred ECCCchHHHHHHHH
Confidence 99999999999998
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=299.79 Aligned_cols=186 Identities=31% Similarity=0.447 Sum_probs=163.8
Q ss_pred ccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 71 LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 71 ~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.|||+..|+.+..+ .+..+. +. |-.|+++...|+| |+|+|||+|+||.++|.+|+++ |++|+|+.|++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~r~-~~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~ 69 (487)
T PRK05225 1 ANYFNTLNLRQQLAQ-LGKCRF-MD--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 69 (487)
T ss_pred CCccccccHHHHHHH-hcccee-cc--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence 369999999965444 344434 22 1257777789999 9999999999999999999999 99999999986
Q ss_pred -----cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccC
Q 023490 151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLD 225 (281)
Q Consensus 151 -----~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~ 225 (281)
+++.+.|.+.|+. ..+.+|++++||+|++++|+..+..++++++++||+|++|..+|||++.+. ++.
T Consensus 70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~---~i~ 141 (487)
T PRK05225 70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV---GEQ 141 (487)
T ss_pred ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC---cee
Confidence 4678888889997 458999999999999999999777788899999999999999999998654 458
Q ss_pred CCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee--eCCCcchhhhhhcc
Q 023490 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QVLSEPLFHLCVGL 280 (281)
Q Consensus 226 ~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~--~d~~g~a~~~~~~~ 280 (281)
+|+|++||.|+|++||++||++|++| +|+|++|||| ||++|+|+|+||+|
T Consensus 142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~ 193 (487)
T PRK05225 142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAW 193 (487)
T ss_pred CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHH
Confidence 89999999999999999999999998 7999999999 89999999999998
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=280.15 Aligned_cols=155 Identities=40% Similarity=0.652 Sum_probs=147.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.-|+| |||+|||+|++|.++|+|||++ |.+|+|+.|+++.+++.|++.|+. ..+.+|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 45899 9999999999999999999999 999999999999999999999999 46999999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEE
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~a 264 (281)
+||..+.++++ ++.|.|+.|+.|..+|||++.+-. +.+|+|++||.|+|++||+.||+.|++| +|+|++||
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 899999999999999999986643 4789999999999999999999999998 79999999
Q ss_pred eeeCCCcchhhhhhcc
Q 023490 265 VHQVLSEPLFHLCVGL 280 (281)
Q Consensus 265 v~~d~~g~a~~~~~~~ 280 (281)
||||+||+|+|+||+|
T Consensus 154 V~qD~sG~a~~~Ala~ 169 (338)
T COG0059 154 VHQDASGKALDIALAY 169 (338)
T ss_pred EEeCCCchHHHHHHHH
Confidence 9999999999999998
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=280.47 Aligned_cols=155 Identities=36% Similarity=0.600 Sum_probs=141.2
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
...|+| |||||||+|+||.++|++|+++ |++|++++++ .++.+.+...|+. ..+++|++++||+|++
T Consensus 11 ~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~l 77 (335)
T PRK13403 11 VELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQM 77 (335)
T ss_pred hhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEEE
Confidence 478999 9999999999999999999999 9999999876 4556667778886 3489999999999999
Q ss_pred ccCChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEE
Q 023490 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (281)
Q Consensus 185 avP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~ 263 (281)
++|+..+.++++ +++++||+|++|+.+|||++.+-+ +.+|+|++||.|+|++||+.|||+|++| +|+|++|
T Consensus 78 lLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l~ 149 (335)
T PRK13403 78 LLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPALV 149 (335)
T ss_pred eCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeEE
Confidence 999977777887 799999999999999999996543 5789999999999999999999999998 7999999
Q ss_pred EeeeCCCcchhhhhhcc
Q 023490 264 AVHQVLSEPLFHLCVGL 280 (281)
Q Consensus 264 av~~d~~g~a~~~~~~~ 280 (281)
|||||+||+|+|+||+|
T Consensus 150 av~qd~sg~a~~~ala~ 166 (335)
T PRK13403 150 AVHQDATGTALHVALAY 166 (335)
T ss_pred EEEECCCCcHHHHHHHH
Confidence 99999999999999998
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=253.77 Aligned_cols=157 Identities=39% Similarity=0.586 Sum_probs=144.7
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
...|+| ++|||||+|+||.++|++|+++ |++|+++++++.++.+.+.+.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 467899 9999999999999999999999 9999999888777777788888873 489999999999999
Q ss_pred ccCChhHHHHH-HHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEE
Q 023490 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (281)
Q Consensus 185 avP~~~~~~vl-~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~ 263 (281)
++|++.+..++ ++++++|++|++|+++|||++.+++. .+|++++||++|||+|+..||+.|++| .|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999998898 58999999999999999999988775 778999999999999999999999998 6999999
Q ss_pred EeeeCCCcchhhhhhccC
Q 023490 264 AVHQVLSEPLFHLCVGLL 281 (281)
Q Consensus 264 av~~d~~g~a~~~~~~~~ 281 (281)
||+||+||+++|++++|+
T Consensus 152 av~~d~t~~a~~~a~~l~ 169 (330)
T PRK05479 152 AVHQDASGNAKDLALAYA 169 (330)
T ss_pred EecCCCCHHHHHHHHHHH
Confidence 999999999999999874
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=244.89 Aligned_cols=154 Identities=38% Similarity=0.607 Sum_probs=137.4
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+| |+|||||+|+||.++|++|+++ |++|++++++..++.+.+.+.|+.. .++.|++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFKV-----GTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCEE-----CCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 9998888877655666677788863 468899999999999999
Q ss_pred ChhHHH-HHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee
Q 023490 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (281)
Q Consensus 188 ~~~~~~-vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~ 266 (281)
|+.+.. +++++.+.++++.+|+++|||++.+++. .+|++.+|||+|||+|+..|||+|++| .|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 985555 4557999999999999999999999886 778899999999999999999999998 6999999999
Q ss_pred eCCCcchhhhhhccC
Q 023490 267 QVLSEPLFHLCVGLL 281 (281)
Q Consensus 267 ~d~~g~a~~~~~~~~ 281 (281)
||++|++++++++|+
T Consensus 141 ~~~~~~~~~~~~~~~ 155 (314)
T TIGR00465 141 QDPTGEAMAIALAYA 155 (314)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999874
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.8e-18 Score=156.62 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=95.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~A~-~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++|||||+|+||.+++++|.+. |+ +|++++|..+ ..+.+. +.|+.. ..+..|++++||+|||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~~~-~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLNVS-NLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCCHH-HHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 64 5777766543 334433 477653 457888999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
||+...++++++.+.++++++| ++++|++++++++ .++...+|+|+|||+|-
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~ 124 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPV 124 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHH
Confidence 9988888999998989988765 5899999999997 66666789999999984
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-18 Score=162.12 Aligned_cols=148 Identities=25% Similarity=0.275 Sum_probs=116.1
Q ss_pred hcccchhhhhcCCCccc-----ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC
Q 023490 86 LANRDEFIVRGGRDLFK-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f~-----~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~ 160 (281)
+..+++. +|.|.|... +...+++| ||+||||+|.||+++|++++.| ||+|+++++++. .+..++.
T Consensus 118 ~~~~~~~-~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~ 187 (324)
T COG1052 118 IHEGDRR-VREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKEL 187 (324)
T ss_pred hHHHHHH-HhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhc
Confidence 4444444 999999764 33468999 9999999999999999999988 999999988753 2333444
Q ss_pred CceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCce
Q 023490 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIG 231 (281)
Q Consensus 161 G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~ 231 (281)
++. +.+++|++++||+|+||||.+..++ +++ +.++.||+|++|| .+.|-.+ ..+++ |.+....++
T Consensus 188 ~~~-----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gaglD 261 (324)
T COG1052 188 GAR-----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGLD 261 (324)
T ss_pred Cce-----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEee
Confidence 455 4469999999999999999999876 887 8999999999998 5667443 34554 555567899
Q ss_pred EEEeccCCCChhhHHhhh
Q 023490 232 VIAVCPKGMGPSVRRLYV 249 (281)
Q Consensus 232 VIrvmPntpg~~vr~~y~ 249 (281)
|+.-.|+....+++++-.
T Consensus 262 V~e~Ep~~~d~~l~~l~~ 279 (324)
T COG1052 262 VFENEPALFDHPLLRLDN 279 (324)
T ss_pred ecCCCCCCCChhHhhccC
Confidence 999999877777765543
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=163.67 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=114.3
Q ss_pred hcccchhhhhcCCCcc-cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 86 LANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f-~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
+..|++. +|+|.|.. .+...+|.| ||+||||+|+||+.+|+.++.+ ||+|+.+++...+ +.+...++..
T Consensus 118 ~~~~~~~-~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~ 187 (324)
T COG0111 118 IPDADAS-QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG 187 (324)
T ss_pred chhhHHH-HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee
Confidence 4455555 79999986 223369999 9999999999999999999999 9999988875433 2333344442
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..++++++++||+|++|+|.++.++ +++ +.+..||+|++|| .+.|-.+ ..+++ |.+....++|+.-
T Consensus 188 ----~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~~ 262 (324)
T COG0111 188 ----VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFEE 262 (324)
T ss_pred ----cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCCC
Confidence 4589999999999999999999886 887 8999999999988 4566443 44664 5555678899999
Q ss_pred ccCCCChhhHH
Q 023490 236 CPKGMGPSVRR 246 (281)
Q Consensus 236 mPntpg~~vr~ 246 (281)
.|..+++++++
T Consensus 263 EPl~~~~pL~~ 273 (324)
T COG0111 263 EPLPADSPLWD 273 (324)
T ss_pred CCCCCCChhhc
Confidence 99999877753
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-18 Score=147.71 Aligned_cols=144 Identities=22% Similarity=0.257 Sum_probs=105.3
Q ss_pred cccchhhhhcCCC--cccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 87 ANRDEFIVRGGRD--LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 87 ~~~~e~~vr~G~W--~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
..+.+. +++|.| .......++.| ++|||||+|+||+++|+.++.+ ||+|+++++.... .......++.
T Consensus 12 ~~~~~~-~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~- 81 (178)
T PF02826_consen 12 PEYHEA-QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE- 81 (178)
T ss_dssp HHHHHH-HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-
T ss_pred HHHHHH-HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-
Confidence 334545 899999 22223589999 9999999999999999999999 9999999887542 2235566775
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..+++|++++||+|++|+|.++.++ +++ +.+..||+|++|+ ++.|-.+ ..+++ +......+||+.-
T Consensus 82 ----~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~~ 156 (178)
T PF02826_consen 82 ----YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFEP 156 (178)
T ss_dssp ----ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-SS
T ss_pred ----eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCCC
Confidence 4699999999999999999988875 787 8999999999988 4666433 33443 3333456678888
Q ss_pred ccCCCChhhH
Q 023490 236 CPKGMGPSVR 245 (281)
Q Consensus 236 mPntpg~~vr 245 (281)
.|-.+..+++
T Consensus 157 EP~~~~~~l~ 166 (178)
T PF02826_consen 157 EPLPADSPLW 166 (178)
T ss_dssp SSSSTTHHHH
T ss_pred CCCCCCChHH
Confidence 8877776664
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-17 Score=151.57 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=99.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
+++|||||.|+||.+++.+|.+. | .+|++.+|..++..+.+.++|+.. ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47999999999999999999999 7 478888887655445677887762 457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcE-EEEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+|+...+++.++.+ ..++++ |++++|+.+..++. .++ +.+|+|+|||+|..
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~ 122 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPAL 122 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHH
Confidence 99999999998888 666765 56999999999998 777 89999999999863
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-17 Score=155.23 Aligned_cols=143 Identities=17% Similarity=0.249 Sum_probs=107.5
Q ss_pred cccchhhhhcCCCccc----ccccccCCCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHHHHHCC
Q 023490 87 ANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~----~~~~~l~G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~A~~~G 161 (281)
..+++. +|+|+|... +...+|.| ||+||||+|+||+.+|+.++ .+ ||+|+++++.... +...+.+
T Consensus 119 ~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~~--~~~~~~~ 188 (323)
T PRK15409 119 VEVAER-VKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHHK--EAEERFN 188 (323)
T ss_pred HHHHHH-HHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCch--hhHHhcC
Confidence 334444 899999632 12368999 99999999999999999998 77 9999877765321 2223455
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceE
Q 023490 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 162 ~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~V 232 (281)
+. ..+++|++++||+|++|+|.++.++ +++ +.+..||||++|| .+.|-.+ ..+++ |.+.+..+||
T Consensus 189 ~~-----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDV 262 (323)
T PRK15409 189 AR-----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGLDV 262 (323)
T ss_pred cE-----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeec
Confidence 54 4589999999999999999999876 787 8999999999998 5666443 34553 4444566788
Q ss_pred EEeccCCCChhhH
Q 023490 233 IAVCPKGMGPSVR 245 (281)
Q Consensus 233 IrvmPntpg~~vr 245 (281)
+.-.|..+.++++
T Consensus 263 f~~EP~~~~~pL~ 275 (323)
T PRK15409 263 FEQEPLSVDSPLL 275 (323)
T ss_pred CCCCCCCCCchhh
Confidence 8888876666664
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-17 Score=152.06 Aligned_cols=138 Identities=17% Similarity=0.198 Sum_probs=106.8
Q ss_pred cchhhhhcCCCcccc-------cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC
Q 023490 89 RDEFIVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (281)
Q Consensus 89 ~~e~~vr~G~W~f~~-------~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G 161 (281)
+++. +|+|+|.... ...+|.| |||||||+|+||+.+|+.++.+ ||+|+++++.... ...+
T Consensus 118 ~~~~-~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~ 184 (311)
T PRK08410 118 YDRY-VKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEE 184 (311)
T ss_pred HHHH-HHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccC
Confidence 3444 8999996321 1368999 9999999999999999999998 9999888775321 1234
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceE
Q 023490 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 162 ~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~V 232 (281)
+. ..+++|++++||+|++|+|.++.++ +++ +.++.||||++|| .+.|-.+ ..+++ |.+. ..+||
T Consensus 185 ~~-----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~-g~i~-AaLDV 257 (311)
T PRK08410 185 YE-----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE-KDIY-AGLDV 257 (311)
T ss_pred ce-----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCeE-EEEec
Confidence 44 4589999999999999999998876 887 8999999999998 5677443 34554 4444 67889
Q ss_pred EEeccCCCChhhHH
Q 023490 233 IAVCPKGMGPSVRR 246 (281)
Q Consensus 233 IrvmPntpg~~vr~ 246 (281)
+.-.|..+.++++.
T Consensus 258 ~~~EP~~~~~pL~~ 271 (311)
T PRK08410 258 LEKEPMEKNHPLLS 271 (311)
T ss_pred CCCCCCCCCChhhc
Confidence 99999877777754
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-16 Score=148.52 Aligned_cols=141 Identities=17% Similarity=0.145 Sum_probs=107.2
Q ss_pred cccchhhhhcCCCccc-------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH
Q 023490 87 ANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~-------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~ 159 (281)
..+.+. +++|+|... ....+|.| |||||||+|.||+.+|+.++.+ ||+|+++++.... .
T Consensus 118 ~~~~~~-~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~ 183 (314)
T PRK06932 118 MGWYRD-QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------V 183 (314)
T ss_pred HHHHHH-HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------c
Confidence 344444 788999521 12368999 9999999999999999999998 9999877654211 1
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCc
Q 023490 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNI 230 (281)
Q Consensus 160 ~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i 230 (281)
.... ..+++|++++||+|++|+|.++.++ +++ +.++.||||++|| .+.|-.+ ..+++ |.+.+..+
T Consensus 184 ~~~~-----~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gAaL 257 (314)
T PRK06932 184 CREG-----YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGAAL 257 (314)
T ss_pred cccc-----cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEEEE
Confidence 1111 3489999999999999999998876 887 8999999999998 5677443 34553 45556678
Q ss_pred eEEEeccCCCChhhHHh
Q 023490 231 GVIAVCPKGMGPSVRRL 247 (281)
Q Consensus 231 ~VIrvmPntpg~~vr~~ 247 (281)
||+.-.|..+.+++++.
T Consensus 258 DV~~~EP~~~~~pl~~~ 274 (314)
T PRK06932 258 DVLVKEPPEKDNPLIQA 274 (314)
T ss_pred ecCCCCCCCCCChhhHh
Confidence 99999998888877643
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=149.72 Aligned_cols=140 Identities=19% Similarity=0.149 Sum_probs=106.7
Q ss_pred hhhcCCCccc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc
Q 023490 93 IVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (281)
Q Consensus 93 ~vr~G~W~f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~ 169 (281)
.+++|+|... ....+|.| |+|||||+|+||+.+|++|+.+ ||+|+++++... ..+...+.|+.. .
T Consensus 172 ~~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~ 239 (385)
T PRK07574 172 QAVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----H 239 (385)
T ss_pred HHHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----c
Confidence 4889999632 22378999 9999999999999999999999 999998887642 223334556552 4
Q ss_pred CCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccCCC
Q 023490 170 GDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 170 ~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
.+++|++++||+|++|+|.++.++ +++ +.+..||+|++||. +.|-.+ ..+++ |.+.+..++|+.-.|..+
T Consensus 240 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV~~~EPlp~ 318 (385)
T PRK07574 240 VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDVWFPQPAPA 318 (385)
T ss_pred CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEecCCCCCCCC
Confidence 589999999999999999988875 887 89999999999984 566433 34553 444456678888888766
Q ss_pred ChhhH
Q 023490 241 GPSVR 245 (281)
Q Consensus 241 g~~vr 245 (281)
.++++
T Consensus 319 d~pL~ 323 (385)
T PRK07574 319 DHPWR 323 (385)
T ss_pred CChHH
Confidence 66665
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-16 Score=147.94 Aligned_cols=133 Identities=23% Similarity=0.215 Sum_probs=103.8
Q ss_pred hhhcCCCccc-------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 93 IVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 93 ~vr~G~W~f~-------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
.+|+|+|... +...+|.| |||||||+|+||+.+|+.++.+ ||+|+++++.... ....
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-- 187 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-- 187 (317)
T ss_pred HHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc--
Confidence 3889999632 12368999 9999999999999999999998 9999887765321 1111
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEec
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvm 236 (281)
..+++|++++||+|++|+|.++.++ +++ +.++.||+|++|| .+.|-.+ ..+++ |.+.+..+||+.-.
T Consensus 188 ---~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~E 263 (317)
T PRK06487 188 ---RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAATDVLSVE 263 (317)
T ss_pred ---ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCC
Confidence 3489999999999999999998876 887 8999999999998 5666443 34553 55556678999999
Q ss_pred cCCCChhhH
Q 023490 237 PKGMGPSVR 245 (281)
Q Consensus 237 Pntpg~~vr 245 (281)
|..++++++
T Consensus 264 P~~~~~pl~ 272 (317)
T PRK06487 264 PPVNGNPLL 272 (317)
T ss_pred CCCCCCchh
Confidence 987777765
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=148.36 Aligned_cols=141 Identities=23% Similarity=0.277 Sum_probs=103.9
Q ss_pred ccchhhhhcCCCccc--------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH
Q 023490 88 NRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~--------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~ 159 (281)
.+++. +|+|+|... ....+|.| |+|||||+|+||+.+|+.|+.+ ||+|+++++.... ....+
T Consensus 121 ~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~ 190 (333)
T PRK13243 121 EADHF-VRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKE 190 (333)
T ss_pred HHHHH-HHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHH
Confidence 34444 889999631 11268999 9999999999999999999999 9999888776432 22334
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCc
Q 023490 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNI 230 (281)
Q Consensus 160 ~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i 230 (281)
.|+. ..+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+. +.|-.+ ..+++ |.+.+..+
T Consensus 191 ~~~~-----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~gAaL 264 (333)
T PRK13243 191 LGAE-----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE-GWIAGAGL 264 (333)
T ss_pred cCCE-----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc-CCeEEEEe
Confidence 5554 3589999999999999999988775 776 89999999999985 555332 23443 33334567
Q ss_pred eEEEeccCCCChhhH
Q 023490 231 GVIAVCPKGMGPSVR 245 (281)
Q Consensus 231 ~VIrvmPntpg~~vr 245 (281)
+|+.-.|.. .++++
T Consensus 265 DV~~~EP~~-~~pL~ 278 (333)
T PRK13243 265 DVFEEEPYY-NEELF 278 (333)
T ss_pred ccCCCCCCC-Cchhh
Confidence 888888853 55554
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=136.65 Aligned_cols=116 Identities=19% Similarity=0.236 Sum_probs=94.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig-~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|+|||||+|+||.+++++|.+. |+ +|+++ +|.. ...+.+.+.|+.. ..+..|+++++|+||+++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~-~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v 69 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNP-ARRDVFQSLGVKT----AASNTEVVKSSDVIILAV 69 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCH-HHHHHHHHcCCEE----eCChHHHHhcCCEEEEEE
Confidence 5799999999999999999998 87 77777 5543 3345566678764 457888999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
|++...+++.++.+.++++++| .+++|+++..++. .++.. +++|+|||+|..
T Consensus 70 ~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~ 122 (266)
T PLN02688 70 KPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCL 122 (266)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHH
Confidence 9888888998888888898865 5779999888875 44443 799999999874
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=138.84 Aligned_cols=120 Identities=14% Similarity=0.189 Sum_probs=96.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~-~~A~~~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
.+ ++|+|||+|+||.+++++|.+. | .+|++++|..++.. ..+.+.|+.. ..++.|+++++|+||
T Consensus 2 ~~-mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVi 70 (279)
T PRK07679 2 SI-QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILF 70 (279)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEE
Confidence 35 7999999999999999999987 6 57888877543222 2334457653 457888999999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEE-eCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~-aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+++||+...++++++.+.++++++|+. ++|+.+..+++ .++.+.+|+|.|||+|..
T Consensus 71 lav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~ 127 (279)
T PRK07679 71 LAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAA 127 (279)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHH
Confidence 999999999999988888988887765 69999988886 556667899999997743
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-16 Score=149.14 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=109.3
Q ss_pred cccchhhhhcCCCccc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce
Q 023490 87 ANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~ 163 (281)
..+++. +++|+|... ....+|.| |+|||||+|+||+.+|++|+.+ |++|+++++... ..+...+.|+.
T Consensus 174 ~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~~-~~~~~~~~g~~ 244 (386)
T PLN03139 174 LPGYHQ-VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLKM-DPELEKETGAK 244 (386)
T ss_pred HHHHHH-HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCCc-chhhHhhcCce
Confidence 334444 889999631 22378999 9999999999999999999998 999988876532 22334455655
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEE
Q 023490 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIA 234 (281)
Q Consensus 164 ~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIr 234 (281)
. ..+++|++++||+|++|+|.++.++ +++ +.+..||+|++||. +.|-.+ ..+++ |.+.+..+||+.
T Consensus 245 ~----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~l~GAaLDV~~ 319 (386)
T PLN03139 245 F----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS-GHIGGYGGDVWY 319 (386)
T ss_pred e----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc-CCceEEEEcCCC
Confidence 2 3489999999999999999988876 887 89999999999985 566333 34543 444455678888
Q ss_pred eccCCCChhhHH
Q 023490 235 VCPKGMGPSVRR 246 (281)
Q Consensus 235 vmPntpg~~vr~ 246 (281)
-.|..+.++++.
T Consensus 320 ~EPlp~d~pL~~ 331 (386)
T PLN03139 320 PQPAPKDHPWRY 331 (386)
T ss_pred CCCCCCCChhhc
Confidence 888777777654
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-16 Score=147.05 Aligned_cols=142 Identities=23% Similarity=0.236 Sum_probs=104.3
Q ss_pred hhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--------Ccee
Q 023490 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTE 164 (281)
Q Consensus 93 ~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--------G~~~ 164 (281)
.+++|+|....+ .+|.| |+|||||+|+||+.+|+.|+.+ ||+|+++++...... .... .+..
T Consensus 143 ~~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~--~~~~~~~~~~~~~~~~ 212 (347)
T PLN02928 143 SLKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEP--EDGLLIPNGDVDDLVD 212 (347)
T ss_pred HHHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhh--hhhhcccccccccccc
Confidence 388899964333 68999 9999999999999999999999 999988877532111 1110 0000
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
+.....+++|++++||+|++|+|.+..++ +++ +.+..||+|++||. +.|-.+ ..+++ |.+....+||+.-
T Consensus 213 ~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLDV~~~ 291 (347)
T PLN02928 213 EKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAIDVAWS 291 (347)
T ss_pred ccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEccCCC
Confidence 00124589999999999999999988876 887 89999999999984 566443 34443 4444567888888
Q ss_pred ccCCCChhhH
Q 023490 236 CPKGMGPSVR 245 (281)
Q Consensus 236 mPntpg~~vr 245 (281)
.|..+.++++
T Consensus 292 EP~~~~~pL~ 301 (347)
T PLN02928 292 EPFDPDDPIL 301 (347)
T ss_pred CCCCCCChhh
Confidence 8877777665
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=138.19 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=91.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccHHH-HHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~~~-A~~~G-~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|+|||+|+||.+++++|... | .+|.+++++.....+. ..+.+ ... ..+..++++++|+|++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57899999999999999999987 6 5777777754322222 22232 221 3477888999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcE-EEEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
++|++...++++++.+.++++++ |++++|+.+..+++ .+|. .+|+|+|||+|-
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~ 124 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTS 124 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHH
Confidence 99999888899999888888874 56899999999987 5554 589999999984
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=142.71 Aligned_cols=137 Identities=15% Similarity=0.154 Sum_probs=101.0
Q ss_pred hhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH
Q 023490 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (281)
Q Consensus 93 ~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~ 172 (281)
..++|+|.... ..++.| +||||||+|+||+.+|++|+++ ||+|+++++.... . .++.. .....++
T Consensus 120 ~~~~~~w~~~~-~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l 184 (312)
T PRK15469 120 LQNSSHWQPLP-EYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREEL 184 (312)
T ss_pred HHHhCCcCCCC-CCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccH
Confidence 37889997432 367999 9999999999999999999999 9999888765322 1 12111 0113478
Q ss_pred HhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEeccCCCChh
Q 023490 173 YETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
+|++++||+|++|+|.++.++ +++ +.+..||+|++|+ ++.|-.+ ..+++ |.+....++|+.-.|..+.++
T Consensus 185 ~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~-g~i~gaalDVf~~EPl~~~~p 263 (312)
T PRK15469 185 SAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS-GKVKGAMLDVFSREPLPPESP 263 (312)
T ss_pred HHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc-CCeeeEEecCCCCCCCCCCCh
Confidence 999999999999999988875 777 7999999999988 4666443 33553 333345667777777665655
Q ss_pred hH
Q 023490 244 VR 245 (281)
Q Consensus 244 vr 245 (281)
++
T Consensus 264 l~ 265 (312)
T PRK15469 264 LW 265 (312)
T ss_pred hh
Confidence 54
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-15 Score=141.52 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=113.0
Q ss_pred hhcccchhhhhcCCCcccc---cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC
Q 023490 85 SLANRDEFIVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (281)
Q Consensus 85 ~~~~~~e~~vr~G~W~f~~---~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G 161 (281)
|...+.+..+++|+|.+.. ...++.| |||||+|+|+||+.+|++|+.| |+.+.+..|... ..+.+.+.+
T Consensus 134 R~~~~g~~~~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~~~-~~~~~~~~~ 205 (336)
T KOG0069|consen 134 RRFSEGNEMVRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRTQL-PPEEAYEYY 205 (336)
T ss_pred hhhhhhhhhhhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeecccCC-chhhHHHhc
Confidence 4444444559999994322 1478999 9999999999999999999998 976666666543 345555555
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceE
Q 023490 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 162 ~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~V 232 (281)
.. ..+++|.+.+||+|++|||+++.++ +++ +.+.+||+|.+|+ .+.|--+ +.+. .|.+.+.+++|
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~-sG~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALK-SGKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHh-cCCcccccccc
Confidence 54 3489999999999999999999886 888 8999999999987 5666443 3344 46667889999
Q ss_pred EEeccCCCChhhHH
Q 023490 233 IAVCPKGMGPSVRR 246 (281)
Q Consensus 233 IrvmPntpg~~vr~ 246 (281)
..-.| .+.++++.
T Consensus 280 f~~EP-~~~~~l~~ 292 (336)
T KOG0069|consen 280 FEPEP-PVDHPLLT 292 (336)
T ss_pred cCCCC-CCCcchhc
Confidence 99999 66666654
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=145.59 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=85.2
Q ss_pred hhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC
Q 023490 93 IVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (281)
Q Consensus 93 ~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~ 171 (281)
.+++|+|... ....+|.| |||||||+|+||+.+|+.++.+ ||+|+++++.... ...++.. ..+
T Consensus 133 ~~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~~-----~~~~~~~----~~~ 196 (409)
T PRK11790 133 KAHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDKL-----PLGNARQ----VGS 196 (409)
T ss_pred HHHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCccc-----ccCCcee----cCC
Confidence 4889999643 22378999 9999999999999999999999 9999888764211 1122321 348
Q ss_pred HHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcc
Q 023490 172 IYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFL 215 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~ 215 (281)
++|++++||+|++|+|.++.++ +++ +.+..||+|++|+. +.|-.
T Consensus 197 l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 243 (409)
T PRK11790 197 LEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTV 243 (409)
T ss_pred HHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcc
Confidence 9999999999999999988876 787 89999999999984 55633
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.5e-15 Score=148.83 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=102.2
Q ss_pred hhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC
Q 023490 93 IVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (281)
Q Consensus 93 ~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~ 171 (281)
.+|+|+|... +...+|.| |+|||||+|+||+++|++|+.+ ||+|+++++... .+.+.+.|+.. ..+
T Consensus 120 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~----~~~ 186 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYIS--PERAEQLGVEL----VDD 186 (525)
T ss_pred HHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE----cCC
Confidence 4899999632 12278999 9999999999999999999999 999988876532 33455667652 347
Q ss_pred HHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccCCCCh
Q 023490 172 IYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
++|++++||+|++|+|.++.++ +++ +.++.||+|++|+. +.|-.+ ..+++ +.+....+||+.-.| .+.+
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~EP-~~~~ 264 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEE-GHVRAAALDVFEKEP-PTDN 264 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc-CCeeEEEEecCCCCC-CCCC
Confidence 9999999999999999988775 776 89999999999885 566332 33443 333345667776666 3344
Q ss_pred hhH
Q 023490 243 SVR 245 (281)
Q Consensus 243 ~vr 245 (281)
+++
T Consensus 265 pL~ 267 (525)
T TIGR01327 265 PLF 267 (525)
T ss_pred hhh
Confidence 443
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=131.68 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=88.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||+|+||.++++.|.+. +. ++++.++...+ .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~~~~-------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPSKKN-------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCChhc-------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 36555553211 23332 3477888999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
++...+++.++.++++++.+|++++|+++..++. .++....++|+|||+|
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p 116 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTP 116 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCch
Confidence 9999999999988888777888999999999887 5666667999999999
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-15 Score=147.49 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=104.8
Q ss_pred cchhhhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC
Q 023490 89 RDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (281)
Q Consensus 89 ~~e~~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~ 167 (281)
+++. +|+|+|... +...+|.| |+|||||+|+||+.+|++++.+ ||+|+++++... .+.+.+.|+..
T Consensus 119 ~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~--- 185 (526)
T PRK13581 119 AHAS-LKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVEL--- 185 (526)
T ss_pred HHHH-HHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE---
Confidence 3444 889999632 12268999 9999999999999999999999 999988877532 23445667763
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccC
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
.+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+. +.|-.+ ..+++ |.+....++|+.-.|.
T Consensus 186 --~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 186 --VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKS-GKVAGAALDVFEKEPP 262 (526)
T ss_pred --EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhc-CCeeEEEEecCCCCCC
Confidence 389999999999999999988775 786 89999999999885 555332 33443 4444556777777773
Q ss_pred CCChhhH
Q 023490 239 GMGPSVR 245 (281)
Q Consensus 239 tpg~~vr 245 (281)
+.++++
T Consensus 263 -~~~pL~ 268 (526)
T PRK13581 263 -TDSPLF 268 (526)
T ss_pred -CCchhh
Confidence 455554
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-15 Score=137.76 Aligned_cols=103 Identities=14% Similarity=0.182 Sum_probs=84.1
Q ss_pred hhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH
Q 023490 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (281)
Q Consensus 93 ~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~ 172 (281)
.+++|+|... ...+|.| ++|||||+|+||+++|+.++.+ ||+|+++++.... .++.. ...++
T Consensus 106 ~~~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l 167 (303)
T PRK06436 106 NMKNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEP 167 (303)
T ss_pred HHHcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCH
Confidence 4889999754 3378999 9999999999999999999988 9999888875321 23321 13489
Q ss_pred HhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCC
Q 023490 173 YETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHG 213 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG 213 (281)
+|++++||+|++|+|.++.++ +++ +.+..||||++|+. +.|
T Consensus 168 ~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG 211 (303)
T PRK06436 168 EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARA 211 (303)
T ss_pred HHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCc
Confidence 999999999999999988876 777 89999999999885 555
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=128.60 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=92.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC---cEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G---~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|++|+|||+|+||.++++.+... | .+|.+++|..+. .+...+ .|+.. ..+.+++++++|+|++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~~-~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPEK-RAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHHH-HHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 58899999999999999999988 7 577778776433 333333 46643 457788899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
|+....++++++.+++ +..+|.+++|+....++. .++.+.+++++|||+|-
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~ 121 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPA 121 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchH
Confidence 9999888998888777 344667999999888886 55656789999999873
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-14 Score=126.27 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=101.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC---cE-EEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G---~~-Viig~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++|+|||.|+||.++++.+.+. + .+ +++.+|.+. +..+.+.+.++.. ..+++++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999876 5 23 555665433 2223344456653 457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~ 266 (281)
|++.+.++++++.++++...+|.+++|+.+..++. .++.+..++|+|||++- ++ | .|.+.+. +.
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~-~v------~-----~g~~~~~-~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAA-EI------G-----KSISLYT-MG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHH-HH------h-----cCCeEEe-eC
Confidence 99998889988877776443556899999999987 66666789999999884 33 2 4666654 33
Q ss_pred eCCCcchhhh
Q 023490 267 QVLSEPLFHL 276 (281)
Q Consensus 267 ~d~~g~a~~~ 276 (281)
.+.+....+.
T Consensus 139 ~~~~~~~~~~ 148 (245)
T PRK07634 139 QSVNETHKET 148 (245)
T ss_pred CCCCHHHHHH
Confidence 4444444443
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=140.01 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=95.2
Q ss_pred hhhcCCCc-cc---ccccccCCCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHH-HHHCCce---
Q 023490 93 IVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFT--- 163 (281)
Q Consensus 93 ~vr~G~W~-f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~-A~~~G~~--- 163 (281)
.+|+|+|. +. ....+|.| +||||||+|.||+.+|+.++ .+ ||+|+++++......+. ....|..
T Consensus 144 ~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~~~~~~l~~ 216 (386)
T PLN02306 144 FMRAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVTAYGQFLKA 216 (386)
T ss_pred HHHcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhhhhcccccc
Confidence 38888873 21 11268999 99999999999999999985 77 99998887654211111 0112210
Q ss_pred ----ecC-CCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCC
Q 023490 164 ----EEN-GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKN 229 (281)
Q Consensus 164 ----~~~-~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~ 229 (281)
... ....+++|++++||+|++|+|.+..++ +++ +.+..||+|++|| .+.|-.+ ..+++ +.+....
T Consensus 217 ~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s-g~i~gAa 295 (386)
T PLN02306 217 NGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA-NPMFRVG 295 (386)
T ss_pred cccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCeeEEE
Confidence 000 012489999999999999999988876 887 8999999999998 5666443 33443 3333455
Q ss_pred ceEEEeccC
Q 023490 230 IGVIAVCPK 238 (281)
Q Consensus 230 i~VIrvmPn 238 (281)
+||+.-.|.
T Consensus 296 LDVf~~EP~ 304 (386)
T PLN02306 296 LDVFEDEPY 304 (386)
T ss_pred EeCCCCCCC
Confidence 677666663
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=128.37 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=88.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc---EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+|||||+|+||.+++++|.+. |. ++.+++|..++..+.+.+. ++.. ..+..++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999987 64 3456666543322333334 3442 4588889999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 188 DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
++...++++++ .++++++| .+++|+++..++. .++....++|+|||+|..
T Consensus 71 p~~~~~vl~~l--~~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a 121 (258)
T PRK06476 71 PQIAEEVLRAL--RFRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVA 121 (258)
T ss_pred HHHHHHHHHHh--ccCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhh
Confidence 98777888765 25677755 5889999999987 556667899999998765
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-14 Score=133.88 Aligned_cols=129 Identities=15% Similarity=0.222 Sum_probs=95.4
Q ss_pred hhhcCCCccc--ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC
Q 023490 93 IVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (281)
Q Consensus 93 ~vr~G~W~f~--~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~ 170 (281)
.+++|+|.+. ....+|.| ++|||||+|+||+++|+.|+.+ |++|+++++...... . ... ...
T Consensus 127 ~~~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~----~-~~~----~~~ 190 (330)
T PRK12480 127 RVQAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDL----D-FLT----YKD 190 (330)
T ss_pred HHHhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhh----h-hhh----ccC
Confidence 3788876542 22368999 9999999999999999999998 999998887642211 1 111 134
Q ss_pred CHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEeccC
Q 023490 171 DIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
+++|++++||+|++|+|.+..+ .++. ++++.||+|++|+ .+.|-.+ ..+++ |.+....+||+.-.|.
T Consensus 191 ~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~-g~i~gaalDV~~~EP~ 266 (330)
T PRK12480 191 SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND-GTLLGAAIDTYENEAA 266 (330)
T ss_pred CHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc-CCeeEEEEeccCCCCc
Confidence 7999999999999999998875 4666 8999999999988 5677553 33443 3333456777777773
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-14 Score=135.14 Aligned_cols=140 Identities=21% Similarity=0.214 Sum_probs=110.6
Q ss_pred cccchhhhhcCCCcc-cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 87 ANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f-~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
++....-+|.|+|.. .+.-.||.| ||+||||+|.||.-+|++++.. ||+|+.+++.. ..++++..|+.
T Consensus 122 i~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi~--~~~~~~a~gvq-- 190 (406)
T KOG0068|consen 122 IGQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPIT--PMALAEAFGVQ-- 190 (406)
T ss_pred cchhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCCC--chHHHHhccce--
Confidence 334444599999964 333489999 9999999999999999999999 99998887764 35678888887
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcc------hhhhhhcccCCCCCceEEEec
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFL------LGHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~------l~~l~~~~~~~~~~i~VIrvm 236 (281)
+.+++|++..||+|.||||..+.++ +++ +.++.||+|..|+ .+.|-. +..+++ |..-+..++|+.-.
T Consensus 191 ---~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~E 266 (406)
T KOG0068|consen 191 ---LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEE 266 (406)
T ss_pred ---eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCC
Confidence 5799999999999999999988875 777 8999999999887 565532 234553 44546677888877
Q ss_pred cCCCC
Q 023490 237 PKGMG 241 (281)
Q Consensus 237 Pntpg 241 (281)
|+.-+
T Consensus 267 pp~~~ 271 (406)
T KOG0068|consen 267 PPKNG 271 (406)
T ss_pred CCccc
Confidence 76653
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=117.59 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=82.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|||||+|+||..+|++|.+. |++|.+++|..+ ..+...+.|... ..++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSPE-KAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSHH-HHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccchh-hhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 999999987754 345566678775 6799999999999999999976
Q ss_pred HH-HHHHH--HHhcCCCCcEEEEeCCcchhhhhhcccCC-CCCceEEEe
Q 023490 191 QA-DNYEK--IFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAV 235 (281)
Q Consensus 191 ~~-~vl~e--i~~~mKpgaILi~aaG~~l~~l~~~~~~~-~~~i~VIrv 235 (281)
+. +++.+ +++.+++|.++++..-......++....+ ..++.+|..
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 65 58887 99999999999998877753322111122 345666644
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=127.83 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=95.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-~~ADVViLa 185 (281)
.-++ ++|+|||+|+||+++|+.+++. |++|+++++.. ..+.+.+.|+.. ..+.++++ .++|+|+++
T Consensus 33 ~~~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVila 99 (304)
T PLN02256 33 KSRK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLC 99 (304)
T ss_pred cCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEe
Confidence 3466 8999999999999999999988 88888777764 235566777763 45777876 479999999
Q ss_pred cCChhHHHHHHHH-HhcCCCCcEEEEeCCcc---hhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 186 ISDAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 186 vP~~~~~~vl~ei-~~~mKpgaILi~aaG~~---l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
+|+....++++++ .++++++++|++++.++ +..++. .++.+.+||+.||+. |+++
T Consensus 100 vp~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPma-G~e~ 158 (304)
T PLN02256 100 TSILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMF-GPES 158 (304)
T ss_pred cCHHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCC-CCCC
Confidence 9999888899988 68899999999877755 455554 566678999999976 5554
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=125.80 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=89.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++|+|||+|+||.+++++|.+. |. +|.+++|..++......+. |+.. ..+..++++++|+|++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 6777777643322223333 5543 457888899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
|+....++++++.++++++++|+ +++|+.+..++. .++ ..++|+|||+|.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~ 121 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITN 121 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHH
Confidence 99988889999989998888664 678899888886 444 369999999874
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=128.23 Aligned_cols=124 Identities=18% Similarity=0.155 Sum_probs=92.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|+|||+|+||+++|+.|++. |++|.++++..... ...+...|+.. ....++++++++||+||+++|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVID--ELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 98887777654321 12223344432 223467889999999999999988
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~vl~ei~~-~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
..++++++.+ .++++++|+++++++...++.....++....||..|| ++|++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~ 126 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK 126 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch
Confidence 8889998887 4899999999999986543321123455678999998 777654
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=126.26 Aligned_cols=123 Identities=19% Similarity=0.315 Sum_probs=98.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC-CcccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~-~~~s~~~A~~~G~~~~~~t~~~~-~E~l~~ADVViLavP~~ 189 (281)
++|+|||+|.||+++|+.|+.. |+.+.++.+. .....+.+.+.|+..+ ...+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVIDE--LTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcccc--cccchhhhhcccCCEEEEeccHH
Confidence 8999999999999999999999 9988555444 3445566777888742 12233 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChh
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
...++++++.+++|+|++|++.++++-..++......|++..||..|| +-||+
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~ 128 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPE 128 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCc
Confidence 999999999999999999999999995443332225566558999999 88885
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=106.10 Aligned_cols=90 Identities=23% Similarity=0.317 Sum_probs=72.4
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCC---cEEEEE-ecCCcccHHHHHHCCceecCCCcC-CHHhhcCcCCEEEEccC
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G---~~Viig-~r~~~~s~~~A~~~G~~~~~~t~~-~~~E~l~~ADVViLavP 187 (281)
||||||.|+||.++++++... | .+|.+. .|+.++..+.+.+.++.. .. +..|+++++|+|+|++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788856 676655556667777653 33 78999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE-EeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILG-LSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi-~aaG 213 (281)
|+...+++.++ +...++++|+ +++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999988 7777888765 5554
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-13 Score=124.81 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=90.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|+|||+|+||+++|+.|++. |++|.++++.. +..+.+.+.|.... ..+..+.++++|+|++++|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~~~-~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSRRE-STCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999998 99988887653 34566667775421 22333578999999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChh
Q 023490 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
.++++++.+.++++++|+++++++...++. ..+....||+.|| +.|++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~---~~~~~~~~v~~HP-m~G~~ 118 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEA---WEKLHPRFVGSHP-MAGTA 118 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHH---HHHhhCCceeeCC-cCCCC
Confidence 889999999999999999999998765553 1111125899999 44443
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-13 Score=129.27 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=93.0
Q ss_pred hhcCCCcccc--cccccCCCcEEEEEccCchHHHHHHHH-HhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC
Q 023490 94 VRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (281)
Q Consensus 94 vr~G~W~f~~--~~~~l~G~ktIGIIG~G~mG~AiA~~L-ra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~ 170 (281)
+++|.|.+.. ...+|.| ++|||||+|+||+++|+.| +.+ |++|+++++..... ...++.. ..
T Consensus 128 ~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~ 192 (332)
T PRK08605 128 VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KD 192 (332)
T ss_pred HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cC
Confidence 7788775422 2368999 9999999999999999999 556 99988777653221 1122221 34
Q ss_pred CHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEecc
Q 023490 171 DIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmP 237 (281)
+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+. +.|..+ ..+++ |.+....++|+...|
T Consensus 193 ~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~gaalDV~~~Ep 267 (332)
T PRK08605 193 TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN-GLIKGAALDTYEFER 267 (332)
T ss_pred CHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEEEEecccCCC
Confidence 89999999999999999988876 555 78999999999885 566443 23443 333345567887776
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=133.61 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=95.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVVi 183 (281)
..++.+ ++|||||+|+||+++|++|++. |++|+++++... .+.+.+.|+.. ..+.+|+++ ++|+|+
T Consensus 364 ~~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~~--~~~a~~~Gv~~----~~~~~el~~~~aDvVI 430 (667)
T PLN02712 364 VNDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSDY--SDEAQKLGVSY----FSDADDLCEEHPEVIL 430 (667)
T ss_pred cCCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECChH--HHHHHHcCCeE----eCCHHHHHhcCCCEEE
Confidence 356788 9999999999999999999998 999888877632 24566778753 457888775 599999
Q ss_pred EccCChhHHHHHHHHHh-cCCCCcEEEEeCCcc---hhhhhhcccCCCCCceEEEeccCCC
Q 023490 184 LLISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~-~mKpgaILi~aaG~~---l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
+|+|+....++++++.. .|++|++|+++++++ +..++. .++.+.+||+.||+..
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G 488 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFG 488 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCC
Confidence 99999888888987765 799999999887764 344544 5677889999999655
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=126.07 Aligned_cols=119 Identities=19% Similarity=0.265 Sum_probs=95.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|+|+||| +|.||.++|+.|+.. |++|.++++......+.+.+.|+.. ..+.+++++++|+|++++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 9999888876544345566777753 4577889999999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcch---hhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG~~l---~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
..++++++.+.++++++|+++++++. ..++. .++.+..||+.|| +.|++.
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HP-maGp~~ 123 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHP-MFGPRT 123 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCC-CCCCCC
Confidence 88899999999999999998887653 44544 4566789999998 545443
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-13 Score=129.28 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=88.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+|.| +||||||+|+||+.+|+.|+++ ||+|+++++.... ...... ..+++|++++||+|++|
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 47999 9999999999999999999999 9999888753211 111111 45899999999999999
Q ss_pred cCChhH----H-HHHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 186 vP~~~~----~-~vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
+|.+.. + ++++ +.+..||+|++||. +.|-.+ ..+++ +.....-++|..-.|. +..++
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~L 244 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVEL 244 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchhh
Confidence 999773 4 5887 89999999999984 566332 33443 3333456777777884 44443
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=120.60 Aligned_cols=95 Identities=24% Similarity=0.230 Sum_probs=84.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|+|||+|+||..+|++|.+. |++|.+++|..++..+.+++.|... ..++.|+++++|+||+++|+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999999777677777888875 56889999999999999999887
Q ss_pred HH-HHH---HHHhcCCCCcEEEEeCCcch
Q 023490 192 AD-NYE---KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 192 ~~-vl~---ei~~~mKpgaILi~aaG~~l 216 (281)
.+ ++. .+++.+|||+++|+++-+..
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp 99 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISP 99 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCH
Confidence 65 663 69999999999999987774
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-12 Score=116.27 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=84.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|+|||+|+||+++|++|+.. |+ +|.++++. ....+.+.+.|+... ..+.+++. ++|+||+++|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~~d~~-~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYGYDHN-ELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEEEcCC-HHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999988 75 66666654 334556667776521 34666765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG 239 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPnt 239 (281)
...+++.++.+ ++++++|++++..+....+..... ....||+.||+.
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPma 116 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMA 116 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcC
Confidence 99899999988 999999998777664333221011 124799999985
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-12 Score=129.11 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=91.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|+|||+|+||.++++.++.. | .+|+++++..+ ..+.+.+.|+.. ....+.+++++++|+|++++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~~~-~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRRAK-SLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECChh-HHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 7 47777776643 355667777641 12346788899999999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcc---hhhhhhcccCCCCCceEEEeccCCC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~---l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
...++++++.++++++.+|+++++++ +..++. .++. ..+|+|||+|
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~--~~~r~~~~hP 123 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGE--LPAGFVPGHP 123 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccc--cCCeEEecCC
Confidence 87889999999999999999999988 556654 4443 3578999999
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.6e-12 Score=122.11 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=89.2
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|+|||+ |.||+++|+.|++.. +++|+.+++.+ .+ ..++++.+++||+|+||+|...
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~-----~~~V~g~D~~d---------~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRM-----QLEVIGHDPAD---------PG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-----CCEEEEEcCCc---------cc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 999999999999741 77876555421 11 2367889999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhh
Q 023490 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (281)
Q Consensus 191 ~~~vl~ei~~~---mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~ 249 (281)
..++++++.++ ++++++|+|+++++-.-++. ..+...+||..|| +-|++...+|+
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~lf~ 121 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPTLK 121 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCcccC
Confidence 99999988775 89999999999999654443 1233457999999 88887765553
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.3e-12 Score=129.23 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=94.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-~~ADVViLavP~~~ 190 (281)
++|||||+|+||+++|+.|++. |++|.++++... .+.+.+.|+.. ..+.++++ +++|+|+||+|+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~~--~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSDH--SLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH--HHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 8999999999999999999998 999888777632 35677788764 45777855 57999999999988
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccCCCChhh
Q 023490 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~vl~ei~-~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
..++++++. +.++++++|+++..++.. .++. .+|.+.+||..||.- |++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~ 174 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQS 174 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCcc
Confidence 888998775 789999999999888843 3443 557778999999954 7774
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-11 Score=114.66 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=90.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|+|||+|+||.++|+.|+.. |+ +|.++++.. ...+.+++.|+.. ....+.+++++++|+|++++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr~~-~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADRSA-ETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEECCH-HHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 8999999999999999999988 74 777777764 3456666777531 12346778899999999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPn 238 (281)
....+++++.+.++++.+|+++++++...++.....++.++.++..+|-
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm 126 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPL 126 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCC
Confidence 8777888888999999999999888854443211134556678888883
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-12 Score=126.72 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=89.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.++.| |||||||+|+||+.+|+.++++ |++|+++++.... .+.+.. +.+++|++++||+|++|
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~~~~~~-----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----AEGDGD-----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccCcc-----ccCHHHHHhhCCEEEEe
Confidence 57999 9999999999999999999999 9999888764221 111122 45899999999999999
Q ss_pred cCChh-----HHHHHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEeccCCCChhhH
Q 023490 186 ISDAA-----QADNYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 186 vP~~~-----~~~vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~~vr 245 (281)
+|.+. ..++++ +.+..||+|++||. +.|-.+ ..+++ +.+....++|..-.|. +.++++
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~-~~~~L~ 245 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQ-IDLELA 245 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCC-CChhhh
Confidence 99976 335887 89999999999985 566333 23332 3333456777777774 444443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=113.24 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=90.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH----------HHHHHCCceec--------C-CCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----------AEARAAGFTEE--------N-GTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~----------~~A~~~G~~~~--------~-~t~~~ 171 (281)
|++|+|||.|.||.++|..+... |++|+++++..+... +...+.|.... . ....+
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~ 76 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTD 76 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence 57899999999999999999998 999988876643221 12223331100 0 00234
Q ss_pred HHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
.+ .+++||+|++++|++.. .+++.++.++++++++| +.++|+.+..+.. .++....++++||+.|.+
T Consensus 77 ~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~ 146 (282)
T PRK05808 77 LD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVP 146 (282)
T ss_pred HH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcc
Confidence 44 58999999999998766 45888999999999988 6889999988876 444445799999999865
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=109.01 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=98.3
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-------~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
|+|+||| .|+||.++++.|.+. |++|.+++|..++..+.+.+ .|+... -...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~-~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDIK-VTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCce-EEEeChHHHHhcCCEEE
Confidence 5899997 999999999999998 99998888765433222221 122100 01236678899999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEE-EeCCcch-----------------hhhhhcccCCCCCceEEEeccCCCChhhH
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-----------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~l-----------------~~l~~~~~~~~~~i~VIrvmPntpg~~vr 245 (281)
+++|++...++++++.+.++. ++|+ ++.|+.. +.+++ .+|.+.+||++|||++-.-..
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999998888887776754 6554 6788775 23444 456546899999999876554
Q ss_pred HhhhhCccccCCCceeEEEeeeCCCcchhhhh
Q 023490 246 RLYVQGKEINGAGINSSFAVHQVLSEPLFHLC 277 (281)
Q Consensus 246 ~~y~~g~~~~~~g~~~~~av~~d~~g~a~~~~ 277 (281)
.. .++.+. ..| |--|.++ |++.+
T Consensus 150 ~~------~~~~~~-~~~-v~Gdd~~-ak~~v 172 (219)
T TIGR01915 150 DV------DDEVDC-DVL-VCGDDEE-AKEVV 172 (219)
T ss_pred CC------CCCCCC-CEE-EECCCHH-HHHHH
Confidence 31 122332 233 5566555 66543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=112.50 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=89.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----CCceecC----------CCcCCHHhh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----~G~~~~~----------~t~~~~~E~ 175 (281)
+++|+|||.|.||.++|..|... |++|+++++..+ ..+.+.+ .|...+. ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVMEG-ALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999988 999988877543 2222221 1210000 013467788
Q ss_pred cCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 176 ISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 176 l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
++++|+|++++|+... ..++.++.+.++++++| +.+.|+.+..+.+ .++....|+++||++|..
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~ 143 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPAD 143 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCc
Confidence 9999999999999753 34778887888888876 5788988888776 444456799999998853
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=110.42 Aligned_cols=122 Identities=18% Similarity=0.213 Sum_probs=87.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceec--------CCCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~--------~~t~~~ 171 (281)
+++|+|||.|.||.++|+.+... |++|+++++..+. .+. ..+.|...+ .-...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 58999999999999999999998 9999988876432 221 122221000 001223
Q ss_pred HHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
..+.+++||+||+++|...+. .++.++.+.++++++|+ .++|+.+..+++ .+.....++++||..|..
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~ 147 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPP 147 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcc
Confidence 346789999999999965553 47778888999999875 899999888776 333445788888776654
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.9e-11 Score=109.44 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=76.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~---ADVViLavP~ 188 (281)
++|||||+|+||.++|++|.+. |++|.+++|..+ ..+...+.|... ..+.+|++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4799999999999999999998 999998887754 334455677664 4588888876 6999999999
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 189 ~~~-~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
..+ ..+++++.+.+++|++|++.+....
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 854 5688899999999999998866553
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-11 Score=111.29 Aligned_cols=116 Identities=23% Similarity=0.291 Sum_probs=93.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~-A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
+++||||.|+|.+++++++... |. +++.+.. ..++... .+..|+.. ..+..++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4789999999999999999988 76 4444443 3344444 66778764 445689999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
+|.....++.++.+..+.+.+| ++++|+.+..+++ .++.+.+|||+|||+|.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~ 122 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPS 122 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChh
Confidence 9999999999888777777765 5999999999987 66677899999999995
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-11 Score=118.80 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=94.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..|.| ++++|||+|.||+.+|+.++.+ |++|+++++.+.+ ...+...|+. ..+++++++++|+|++|
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 47899 9999999999999999999999 9999888776443 2345556776 35789999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceEEEeccCCCChhh---HHhhhh
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGVIAVCPKGMGPSV---RRLYVQ 250 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~VIrvmPntpg~~v---r~~y~~ 250 (281)
+. ..++++ +.+..||||++|+.++-+.. ..++. ..++++..+.|+.....+ |++|+=
T Consensus 317 tG---t~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~-----~~~vdv~evep~v~~~~~~~g~~i~ll 381 (476)
T PTZ00075 317 TG---NKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEA-----YPGIEIVEIKPQVDRYTFPDGKGIILL 381 (476)
T ss_pred CC---cccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHh-----cCCceeecccCCCCeEEeCCCCEEEEE
Confidence 74 345786 89999999999987655442 22222 236788889898877666 456653
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=114.36 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=89.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH------------------HCC-ceecCCCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~------------------~~G-~~~~~~t~~~ 171 (281)
+++|||||.|+||.++|.++... |++|.++++..+....... ..| +.. ..+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47999999999999999999999 9999999887543211100 012 222 457
Q ss_pred HHhhcCcCCEEEEccCChhH-HH-HHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 172 IYETISGSDLVLLLISDAAQ-AD-NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~-~~-vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+++++++||+|+.++|+... .+ ++.++.+.++++++|. .+.|+.+..+.+ .+...-.++..||+.|..
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~ 144 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVY 144 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCcc
Confidence 88999999999999999864 33 6778888888888663 568888877775 344445799999988753
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=106.07 Aligned_cols=95 Identities=23% Similarity=0.303 Sum_probs=74.6
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC--------------ceecCCCcCCHHhhc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G--------------~~~~~~t~~~~~E~l 176 (281)
|++|+|||+|+||.++|..|.+. |++|.++++.... .+...+.+ ... ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPEQ-AAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 57999999999999999999998 9999888876432 33333332 221 34777889
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEE-eCCcch
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL 216 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~-aaG~~l 216 (281)
+++|+|++++|+.....+++++.+.++++++|+. ..|+..
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 9999999999998777788899999999998764 448775
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-10 Score=105.40 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=76.6
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
+++|||||+|.||.++|+++.+. |++|.++++... ..+...+.|... ..+.+|+++++|+|++++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~~~-~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRNPE-AVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 999988877643 344455666653 4578899999999999999877
Q ss_pred HHH-HH---HHHHhcCCCCcEEEEeCCcch
Q 023490 191 QAD-NY---EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 ~~~-vl---~ei~~~mKpgaILi~aaG~~l 216 (281)
..+ ++ +++.+.++++++|++.+.+..
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~ 100 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAP 100 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCH
Confidence 654 55 357889999999998877665
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=3e-10 Score=105.87 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=85.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~---ADVViLavP~ 188 (281)
++|||||+|+||.++|++|.+. |++|.++++..++ .+...+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~~-~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPEA-VEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHHH-HHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999998 9999998887543 44456677764 4578888875 6999999999
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccCCCC
Q 023490 189 AAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 189 ~~~-~~vl~ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
... ..+++.+.+.++++.++++.+..... .+.. ..-..++.++. +|..-|
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~ 123 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGG 123 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcC
Confidence 844 56888889999999999887554431 1211 11134667775 675444
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=105.91 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=76.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|||||+|+||.++|++|.+. |++|.++++..++ .+...+.|... ..+..|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~~-~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQA-VDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 47899999999999999999998 9999988887543 44555566653 4588899999999999999987
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEeCCcch
Q 023490 191 QA-DNYE---KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 ~~-~vl~---ei~~~mKpgaILi~aaG~~l 216 (281)
+. .++. .+++.++++.++++.+-+..
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p 99 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHP 99 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCH
Confidence 54 4653 47888999999988766654
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=110.48 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=82.8
Q ss_pred CCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 110 G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
.+++|+||| +|.||+++|+.|++. |++|.++++... .+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~~------------------~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDDW------------------DRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCcc------------------hhHHHHHhcCCEEEEeCcH
Confidence 458999999 999999999999999 999988876421 1456788999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccCCCChh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
....++++++.+ +++|++|+++++++-. .+.. ..+ .+||..|| +-|++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~--~~fvg~HP-m~G~~ 203 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHS--GPVLGLHP-MFGPD 203 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCC--CCEEeeCC-CCCCC
Confidence 988889998888 9999999999887643 3332 222 26999999 55553
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=97.50 Aligned_cols=113 Identities=27% Similarity=0.316 Sum_probs=71.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
.+|+|||.|+.|.++++.|... |++|.-...+...+.+.+.+ .+-. ...+++|+++++|+|+|++||..
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~~~~~----~~~~~~~~~~~aDlv~iavpDda 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAFIGAG----AILDLEEILRDADLVFIAVPDDA 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC-SEEEE-S-CCH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccccccc----cccccccccccCCEEEEEechHH
Confidence 7999999999999999999999 99875443332333344432 2222 24578899999999999999999
Q ss_pred HHHHHHHHHhc--CCCCcEEEEeCCcc-hhhhhhcccCCCCCceEEEecc
Q 023490 191 QADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 191 ~~~vl~ei~~~--mKpgaILi~aaG~~-l~~l~~~~~~~~~~i~VIrvmP 237 (281)
+..+.+++... .++|++|+-.+|-. .+.++. .-..+-.+..+||
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 99999998887 89999999877733 444442 1123445556655
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.6e-10 Score=105.40 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=74.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hcCcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E---~l~~ADVViLavP~ 188 (281)
|+|||||+|+||.++|++|.+. |++|.+++|..+ ..+...+.|... ..+.++ .++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 999988887754 344555666553 334544 45678999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
.....+++++.+.+++|.+|++.+...
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 966679999999999999999876643
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=105.87 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=85.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
|+|||||+|+||.++|++|.+. |++|.++++... .+...+.|... ..+..|+++++|+|++++|+.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~~--~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGPV--ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCHh--HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 999988887642 34455667653 56888999999999999999865
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeCCcchhhhhhcc-cCCCCCceEEEeccCCCCh
Q 023490 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 192 ~-~vl~---ei~~~mKpgaILi~aaG~~l~~l~~~~-~~~~~~i~VIrvmPntpg~ 242 (281)
. +++. .+.+.+++|++|++++.+.....++.. ..-..+..++. +| ..|.
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aP-VsGg 122 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-AP-VSGG 122 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ec-CCCC
Confidence 4 4663 367788999999999887764222100 11134667777 57 3443
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=102.31 Aligned_cols=92 Identities=24% Similarity=0.267 Sum_probs=76.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-HHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
||+++|||.|+||.++|+++.+. |++|+|+.++.+++.+.+ .+.+...+ ..+++++++.+|+|+|++|..
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i~---~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLIT---GGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhccccc---cCChHHHHhcCCEEEEeccHH
Confidence 68999999999999999999999 999999988876555433 33443321 468999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aa 212 (281)
....++.++...+. |+||++..
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~t 93 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDAT 93 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecC
Confidence 99999999998887 88988654
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=104.36 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=75.1
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHH
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~ 192 (281)
+|||||+|+||.++|++|.+. |++|.++++..+ ..+.+.+.|... ..+.++++++||+|++++|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGPE-VADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 589999999999999999999 999998887753 345556667653 457889999999999999997665
Q ss_pred H-HH---HHHHhcCCCCcEEEEeCCcch
Q 023490 193 D-NY---EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 193 ~-vl---~ei~~~mKpgaILi~aaG~~l 216 (281)
+ ++ +.+.+.++++++|++.+.+..
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~ 97 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISP 97 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCH
Confidence 4 54 247788999999998776664
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-10 Score=104.02 Aligned_cols=112 Identities=17% Similarity=0.241 Sum_probs=80.6
Q ss_pred ccchhhhhcCCCcccc--cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 88 NRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~~--~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
.|....+-++.|...+ ...++.| ++++|||+|.||+++|+.|+.+ |++|.+++|...+ .+.+.+.|....
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~ 198 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF 198 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee
Confidence 3444444444443211 1257899 9999999999999999999999 9999999887532 334455565421
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCC
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHG 213 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG 213 (281)
...++++.++++|+|++++|.. +++ +.++.|+++++|++.+.
T Consensus 199 --~~~~l~~~l~~aDiVint~P~~----ii~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 199 --PLNKLEEKVAEIDIVINTIPAL----VLTADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred --cHHHHHHHhccCCEEEECCChH----HhCHHHHhcCCCCeEEEEeCc
Confidence 1335678899999999999975 343 67888999999987643
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=101.12 Aligned_cols=122 Identities=18% Similarity=0.279 Sum_probs=87.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH--------------HCCceecC---------C
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------------AAGFTEEN---------G 167 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~--------------~~G~~~~~---------~ 167 (281)
+++|+|||.|.||.++|..+... |++|+++++..+. .+.+. +.|...+. .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSEEI-LKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999998 9999988876432 22211 11210000 0
Q ss_pred CcCCHHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCChh
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
...+. +.++++|+|++++|++.. ..++.++.+.++++++|+ ..+|+.+..+.. .++....++.+||+.|.+-
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~ 150 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPV 150 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 12234 678999999999999764 347788888899999865 678888887775 4444557999999987653
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.1e-10 Score=111.58 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=76.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCc---CCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~~---ADVViL 184 (281)
+.+|||||+|+||.+||++|.+. |++|.+++|..++..+...+ .|... -....+++|+++. +|+|++
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 47899999999999999999999 99999999986543332221 14320 0014578888876 999999
Q ss_pred ccCChhHHH-HHHHHHhcCCCCcEEEEeCCcch
Q 023490 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 185 avP~~~~~~-vl~ei~~~mKpgaILi~aaG~~l 216 (281)
++|+.+..+ +++.+++.+++|.+||+.+-...
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~ 111 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWY 111 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 999987765 88899999999999999876653
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.7e-10 Score=101.73 Aligned_cols=91 Identities=25% Similarity=0.228 Sum_probs=75.3
Q ss_pred EEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH-HHH
Q 023490 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (281)
Q Consensus 116 IIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~-~~v 194 (281)
|||+|+||.++|++|.+. |++|.+++|..+ ..+...+.|... ..+..++++++|+|++++|+..+ ..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 999999988754 345556667653 45888999999999999999665 457
Q ss_pred H---HHHHhcCCCCcEEEEeCCcchh
Q 023490 195 Y---EKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 195 l---~ei~~~mKpgaILi~aaG~~l~ 217 (281)
+ +.+.+.++++++|++.+++...
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~ 95 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPD 95 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHH
Confidence 6 5788899999999998888864
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.5e-10 Score=100.49 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=74.4
Q ss_pred cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcE-EEEeCCcchhhh
Q 023490 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHL 219 (281)
Q Consensus 141 ~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l~~l 219 (281)
.+|++++|..++..+.+.+.|+.. ..+..++++++|+|||++||+...+++.++.+.+.++++ |++++|+.+..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 468888886544334445667654 457889999999999999999988999988887776665 569999999999
Q ss_pred hhcccCCCCCceEEEeccCCCC
Q 023490 220 QSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 220 ~~~~~~~~~~i~VIrvmPntpg 241 (281)
+. .++.+.+++|+|||+|-
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~ 104 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPA 104 (245)
T ss_pred HH---HcCCCCeEEEECCChHH
Confidence 87 66766789999999863
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=98.17 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=76.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----------CC-------------ceecC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----------~G-------------~~~~~ 166 (281)
+++|+|||.|.||.++|..+... |++|+++++..+. .+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQEQ-LESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 57999999999999999999998 9999988876432 222211 11 111
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEE-EEeCCcchhhhhh
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQS 221 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~ 221 (281)
..+.++++++||+|++++|..... .++.++.+.++++++| +..+.+.+..+.+
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~ 127 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS 127 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 346788999999999999997754 3677888899999977 5677777766654
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=108.41 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=74.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcC---cCCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~---~ADVViL 184 (281)
|.+|||||+|+||.++|++|.+. |++|.+++|..++..+.... .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 46899999999999999999999 99999999875543222221 24221 12458888886 5899999
Q ss_pred ccCChhHH-HHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~~~~~-~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++|+.... .+++++.+++++|.+|++.+...
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 98887665 58899999999999999876543
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.7e-09 Score=96.12 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=80.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC------------CceecC---------CCc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~------------G~~~~~---------~t~ 169 (281)
+++|+|||.|.||.++|..+... |++|+++++..+ ..+.+.+. ....++ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 48999999999999999999988 999998887643 22222111 111000 013
Q ss_pred CCHHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 170 GDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 170 ~~~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
.+.++++++||+||.++|.... ..+++++.+.++++++|. ..+++.+..+.+ .++....++..||--|
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p 146 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANE 146 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCC
Confidence 5788899999999999997643 347888889999999884 556566655554 2222234555555333
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.1e-09 Score=95.91 Aligned_cols=103 Identities=24% Similarity=0.341 Sum_probs=74.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-----------HCCceec---------CCCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE---------NGTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-----------~~G~~~~---------~~t~~ 170 (281)
+++|+|||.|.||.++|..+... |++|+++++..+. .+.+. +.|...+ -....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSADR-LEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999999 9999999876432 22211 1231100 00123
Q ss_pred CHHhhcCcCCEEEEccCChhH-H-HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 171 DIYETISGSDLVLLLISDAAQ-A-DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~-~-~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
+. +.+++||+|+.++|...+ . .++.++.+.++++++|+ .++++.+..+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~ 129 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS 129 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 45 458899999999998654 3 47788889999999875 788888777665
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.4e-09 Score=102.64 Aligned_cols=128 Identities=19% Similarity=0.143 Sum_probs=96.3
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
-+.+..|.+.-|....|+.+..+..+.+ .....-..++| ++++|||+|.+|..+|+.++.+ |++|+++++
T Consensus 157 ~Pvi~vnds~~K~~fDn~yg~g~s~~~~---i~r~t~~~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~ 226 (406)
T TIGR00936 157 FPAINVNDAYTKSLFDNRYGTGQSTIDG---ILRATNLLIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEV 226 (406)
T ss_pred CcEEEecchhhchhhhcccccchhHHHH---HHHhcCCCCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeC
Confidence 4557888899888777777777663321 00000024799 9999999999999999999998 999998876
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcc
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~ 215 (281)
.+.+ ...+...|+.. .+.+|+++++|+||.++.. ..+++ +.+..||+|++|+.++.+.
T Consensus 227 dp~r-~~~A~~~G~~v-----~~leeal~~aDVVItaTG~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 227 DPIR-ALEAAMDGFRV-----MTMEEAAKIGDIFITATGN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred Chhh-HHHHHhcCCEe-----CCHHHHHhcCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 6543 35566778863 4678999999999988763 45777 6899999999998766544
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=92.57 Aligned_cols=112 Identities=23% Similarity=0.286 Sum_probs=78.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..|.| |++.|+|||..|+.+|+.|+.. |.+|++.+..+.+ .-+|...||.. .+++|+++++|+|+.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~-alqA~~dGf~v-----~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIR-ALQAAMDGFEV-----MTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHH-HHHHHHTT-EE-----E-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHH-HHHhhhcCcEe-----cCHHHHHhhCCEEEEC
Confidence 35889 9999999999999999999999 9999999887543 34577789984 5899999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceEEEeccCC
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGVIAVCPKG 239 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~VIrvmPnt 239 (281)
|-... ++. +.+..||+|++|..++.+.. ..+.. ..+....+.|+.
T Consensus 86 TG~~~---vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~------~~~~~~~v~~~v 135 (162)
T PF00670_consen 86 TGNKD---VITGEHFRQMKDGAILANAGHFDVEIDVDALEA------NAVEREEVRPQV 135 (162)
T ss_dssp SSSSS---SB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT------CTSEEEEEETTE
T ss_pred CCCcc---ccCHHHHHHhcCCeEEeccCcCceeEeeccccc------cCcEEEEcCCCe
Confidence 88744 444 77888999999998887753 34443 135666666643
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-09 Score=99.42 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=66.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--------Cceec--CCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE--NGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--------G~~~~--~~t~~~~~E~l~~ADV 181 (281)
++|+|||+|+||.++|..|.+. |++|.+++|..+. .+...+. |.... -....+++|+++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7999999999999999999999 9999999886432 2222222 21100 0014578888999999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcc
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~ 215 (281)
|++++|..... ++++.++++.+|+ .+.|+.
T Consensus 78 Vi~~v~~~~~~----~v~~~l~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 78 AVVAVPSKALR----ETLAGLPRALGYVSCAKGLA 108 (328)
T ss_pred EEEECchHHHH----HHHHhcCcCCEEEEEeeccc
Confidence 99999998643 4446677888665 667764
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-09 Score=98.45 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=67.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
.+ |+|+|||+|+||.++|+.|.+. |++|.+++|... .+++++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 45 8999999999999999999999 999998887632 2677889999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcEEEEe-CCcc
Q 023490 189 AAQADNYEKIFSC-MKPNSILGLS-HGFL 215 (281)
Q Consensus 189 ~~~~~vl~ei~~~-mKpgaILi~a-aG~~ 215 (281)
.....+++++.++ ++++++|+.+ .|+.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTATKGLD 86 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeCCccc
Confidence 7667788887664 7888887654 3444
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-09 Score=90.06 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=70.0
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec----------CCCcCCHHhhcCcCCEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~----------~~t~~~~~E~l~~ADVV 182 (281)
||+|||.|++|.++|.-|... |++|.++.|+.+ ..+.-.+.+.... -....|++++++++|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 699999999999999999999 999999988743 2222222221100 01145789999999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEE-EeCCc
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~ 214 (281)
++++|.+.+.++++++.++++++++|+ ...|+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998765 56787
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.1e-09 Score=104.31 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=71.6
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhc---CcCCEEEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~---G--~~~~~~t~~~~~E~l---~~ADVViL 184 (281)
.|||||+|+||.++|++|.+. |++|.+++|..++. +...+. | +.. ..++++++ +++|+|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~-~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKT-DEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHH-HHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence 489999999999999999999 99999999876543 333333 2 332 34666655 57999999
Q ss_pred ccCChhH-HHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~~~~-~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++|+... ..+++++.+++++|.+|++.+...
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~ 101 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSH 101 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcC
Confidence 9999655 458899999999999999887543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-09 Score=100.75 Aligned_cols=94 Identities=23% Similarity=0.264 Sum_probs=78.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++||+||+|+||.+++.+|.+. |++|++++|..++ .+..++.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999999988543 45666778775 67999999999999999999877
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEeCCcch
Q 023490 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLL 216 (281)
Q Consensus 192 ~-~vl~---ei~~~mKpgaIL-i~aaG~~l 216 (281)
. +++. -++..++++... +++.-+..
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp 134 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDP 134 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCH
Confidence 5 4654 477778888866 78876664
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=96.59 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=76.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCCceecC-----CCcCCHHh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~~~~-----~t~~~~~E 174 (281)
+++|+|||.|.||..+|..+... |++|+++++..+. .+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPGA-EAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 9999999876431 1111 112211000 11357889
Q ss_pred hcCcCCEEEEccCChhHHH--HHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 175 TISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~~--vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
++++||+|+-++|.....+ ++.++.+.++++++|. -.+++.+..+..
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~ 129 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA 129 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH
Confidence 9999999999999877643 7789999999999774 456776666654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-08 Score=92.16 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=79.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (281)
|++|+|||.|.||.++|..|... |++|+++++..+. .+. ..+.|..... ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~~-~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPAA-AAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 9999999887432 222 1234431000 0145
Q ss_pred CHHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
++.++++++|+|+.++|.... ..++.++.+..+++.+|. -+.+.....+.+ .++....++..||=.|
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p 144 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINP 144 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCC
Confidence 788899999999999998753 336667666666665553 334455555554 3333345666666544
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=98.27 Aligned_cols=167 Identities=20% Similarity=0.178 Sum_probs=115.8
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
-+.+..|.+.-|....|+.+..+..+.+ ...... ..+.| ++++|+|+|.||..+++.++.+ |.+|++.++
T Consensus 164 ~Pv~~vnds~~K~~~dn~~g~g~s~~~~--i~r~t~-~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~ 233 (413)
T cd00401 164 FPAINVNDSVTKSKFDNLYGCRESLIDG--IKRATD-VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEV 233 (413)
T ss_pred CCEEEecchhhcccccccchhchhhHHH--HHHhcC-CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 4557888888888777777777663321 011112 35799 9999999999999999999999 999988776
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCC
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFP 227 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~ 227 (281)
... ..+.|.+.|+.. .+.+++++.+|+|+.++.. ..+++ +.+..||+|.+|+.++.+... +....+. .
T Consensus 234 d~~-R~~~A~~~G~~~-----~~~~e~v~~aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG~~~~e-Id~~~L~-~ 302 (413)
T cd00401 234 DPI-CALQAAMEGYEV-----MTMEEAVKEGDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIGHFDVE-IDVKGLK-E 302 (413)
T ss_pred Chh-hHHHHHhcCCEE-----ccHHHHHcCCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeCCCCCc-cCHHHHH-h
Confidence 643 456788889863 3677889999999998764 34676 568999999998876654321 1111111 2
Q ss_pred CCceEEEeccCCCCh-----hhHHhhhhCccccC
Q 023490 228 KNIGVIAVCPKGMGP-----SVRRLYVQGKEING 256 (281)
Q Consensus 228 ~~i~VIrvmPntpg~-----~vr~~y~~g~~~~~ 256 (281)
..++++.+.++.... ..-++..+|+-||=
T Consensus 303 ~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl 336 (413)
T cd00401 303 NAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNL 336 (413)
T ss_pred hccEEEEccCCcceEEcCCcchhhhhhCcCCCCC
Confidence 356788888875431 34456677765453
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=112.18 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=78.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|||||+|+||..||++|.+. |++|.+++|..++ .+...+.|... ..++.|++++||+||+++|+.++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999999887543 44555677764 56899999999999999999877
Q ss_pred HH-HH---HHHHhcCCCCcEEEEeCCcch
Q 023490 192 AD-NY---EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 192 ~~-vl---~ei~~~mKpgaILi~aaG~~l 216 (281)
.+ ++ +.+++.+++|+++++.+-+..
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p 102 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILP 102 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCH
Confidence 54 65 358889999999998876664
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-08 Score=95.29 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHHH
Q 023490 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (281)
Q Consensus 123 G~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~e 197 (281)
|.+||++|.+. |++|+++++.... ..+...+.|... ..+..|+++++|+||+++|+..+. ++++.
T Consensus 32 GspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~----AaS~aEAAa~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 32 GSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV----VSDDKEAAKHGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred HHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee----cCCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence 88999999999 9999999876432 123466778775 567899999999999999998875 57788
Q ss_pred HHhcCCCCcEEEEeCCcchhh----hhhcccCC-CCCceEEEeccC-CCChhhHHhhhhC
Q 023490 198 IFSCMKPNSILGLSHGFLLGH----LQSIGLDF-PKNIGVIAVCPK-GMGPSVRRLYVQG 251 (281)
Q Consensus 198 i~~~mKpgaILi~aaG~~l~~----l~~~~~~~-~~~i~VIrvmPn-tpg~~vr~~y~~g 251 (281)
+++++++|++|++++-+.... ++. .+.+ ++|+.|...||- .||.+-.+.|+-+
T Consensus 102 Laa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~ 160 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVPGTPQHGHYVIG 160 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCCCCCCCceeeec
Confidence 999999999999988776432 222 2222 578999999985 4777777677654
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=94.10 Aligned_cols=109 Identities=22% Similarity=0.294 Sum_probs=76.8
Q ss_pred HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCC
Q 023490 126 QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205 (281)
Q Consensus 126 iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpg 205 (281)
+|+.|++. |+..+|..+ +.+....+.+++.|+..+ ..+..+.++++|+||||+|+....++++++.+++++|
T Consensus 1 ~A~aL~~~----g~~~~v~g~-d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~ 72 (258)
T PF02153_consen 1 IALALRKA----GPDVEVYGY-DRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPG 72 (258)
T ss_dssp HHHHHHHT----TTTSEEEEE--SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TT
T ss_pred ChHHHHhC----CCCeEEEEE-eCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCC
Confidence 57788887 222565544 444566778888998742 2233678999999999999999999999999999999
Q ss_pred cEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChh
Q 023490 206 SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 206 aILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
++|++.++++-..++.....++.+.+||..|| +-|++
T Consensus 73 ~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e 109 (258)
T PF02153_consen 73 AIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE 109 (258)
T ss_dssp SEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS
T ss_pred cEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc
Confidence 99999999995433322225567899999999 88885
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-08 Score=95.08 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=82.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC---------ceecC--CCcCCHHhhcCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G---------~~~~~--~t~~~~~E~l~~A 179 (281)
+++|+|||.|+||.++|..|.+. | +|.++.+... ..+...+.+ +.... ....+.+++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~~~-~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRSAE-TADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCCHH-HHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 37899999999999999999988 7 4566665432 222222222 11000 0134677889999
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcch-------hhhhhcccCCCCCceEEEeccCCC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l-------~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
|+|++++|.....++++++.+++++++ +|++..|+.. +.+++ .++.....+..+||.+
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a 144 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIA 144 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHH
Confidence 999999999988889999999999887 4568889885 34554 3444334567777655
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=100.21 Aligned_cols=125 Identities=20% Similarity=0.132 Sum_probs=90.1
Q ss_pred ccccccchhhhhhhhhcccchhhhhcCCCc--ccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 71 LLDFETSVFKKDAISLANRDEFIVRGGRDL--FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 71 ~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~--f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
.+..|.+.-|....|. +.+.+|-|. ....-..+.| ++++|||+|.||..+|+.++.. |++|+++++
T Consensus 176 v~~vn~s~~K~~~dn~-----~gt~~s~~~ai~rat~~~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~ 243 (425)
T PRK05476 176 AINVNDSVTKSKFDNR-----YGTGESLLDGIKRATNVLIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEV 243 (425)
T ss_pred EEecCCcccCcccccc-----HHHHhhhHHHHHHhccCCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcC
Confidence 3555666666433333 334555563 1110124799 9999999999999999999999 999998887
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcch
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l 216 (281)
...+ ...+...|+. ..+++++++.+|+||.++.. .++++ +.+..||+|++++.++.+..
T Consensus 244 dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aTG~---~~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 244 DPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTATGN---KDVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred Cchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECCCC---HHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 6544 3445566776 34788999999999998754 34777 78999999999988776653
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=110.82 Aligned_cols=95 Identities=21% Similarity=0.200 Sum_probs=76.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|||||+|+||.+||++|.+. |++|.++++...+ .+...+.|... ..++.+++++||+|++++|+..+
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8999999999999999999999 9999999887543 34445566543 45889999999999999997665
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeCCcchh
Q 023490 192 A-DNYE---KIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 192 ~-~vl~---ei~~~mKpgaILi~aaG~~l~ 217 (281)
. +++. .+++.+++|.++++.+-+...
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~ 423 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPG 423 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHH
Confidence 4 5662 578889999999988776643
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=97.51 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=70.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-------------------HCC-ceecCCCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-------------------~~G-~~~~~~t~~~ 171 (281)
|+|+|||+|.||..+|..|.+. |++|+++++...+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5799999999999999999998 9999888776432 22111 123 222 347
Q ss_pred HHhhcCcCCEEEEccCChh----------HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~----------~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
..++++++|+||+++|... ....++++.+.++++++|++.+++.
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~ 123 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVP 123 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCC
Confidence 7888999999999999753 3446667888999999998877653
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-08 Score=93.51 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh-HHHHHHH
Q 023490 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEK 197 (281)
Q Consensus 123 G~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~-~~~vl~e 197 (281)
|.++|++|... |++|.++++.... ..+...+.|+.. ..+..++++++|+||+++|+.. ...++++
T Consensus 32 G~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~----asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~ 101 (342)
T PRK12557 32 GSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV----VSDDAEAAKHGEIHILFTPFGKKTVEIAKN 101 (342)
T ss_pred HHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE----eCCHHHHHhCCCEEEEECCCcHHHHHHHHH
Confidence 88999999998 9999999876431 223455677764 4578899999999999999988 4568889
Q ss_pred HHhcCCCCcEEEEeCCcchhhh-hhcccCCCCCceEEEeccCCCCh
Q 023490 198 IFSCMKPNSILGLSHGFLLGHL-QSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 198 i~~~mKpgaILi~aaG~~l~~l-~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+.+.++++++|++++.+..... +.....++.....++++|+.|++
T Consensus 102 L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 102 ILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAA 147 (342)
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcc
Confidence 9999999999988777664432 11001333333456676766654
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=98.51 Aligned_cols=125 Identities=17% Similarity=0.117 Sum_probs=94.8
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCc-cc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEE
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDL-FK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~-f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig 146 (281)
-+.+..|.+.-|....|+-+..+.. |. +. ..-..+.| ++++|||+|.||..+|+.++.+ |++|++.
T Consensus 216 ~Pvi~vnds~~K~~fDn~yGtgqS~-----~d~i~r~t~i~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~ 283 (477)
T PLN02494 216 FPAINVNDSVTKSKFDNLYGCRHSL-----PDGLMRATDVMIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVT 283 (477)
T ss_pred CCEEEEcChhhhhhhhccccccccH-----HHHHHHhcCCccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEE
Confidence 3458889999998888887776662 42 11 11134799 9999999999999999999998 9999888
Q ss_pred ecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHH-HHHHhcCCCCcEEEEeCCc
Q 023490 147 LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 147 ~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl-~ei~~~mKpgaILi~aaG~ 214 (281)
++.+.+ ...+...|+.. .+++|+++++|+|+.++.. .+++ .+.+..||+|++|+.++.+
T Consensus 284 e~dp~r-~~eA~~~G~~v-----v~leEal~~ADVVI~tTGt---~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 284 EIDPIC-ALQALMEGYQV-----LTLEDVVSEADIFVTTTGN---KDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred eCCchh-hHHHHhcCCee-----ccHHHHHhhCCEEEECCCC---ccchHHHHHhcCCCCCEEEEcCCC
Confidence 776432 34566778763 3788999999999986553 2455 4889999999999876553
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=88.97 Aligned_cols=102 Identities=26% Similarity=0.303 Sum_probs=75.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC--C-----------CcCCHHhhcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~--~-----------t~~~~~E~l~ 177 (281)
|++|+|||.|.||..+|..|... |++|.+++|.. ..+...+.|....+ + ...+. +.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRAR--IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecHH--HHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 47899999999999999999999 99999888752 22334445543211 0 01233 5678
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcch-hhhhh
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS 221 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~l-~~l~~ 221 (281)
++|+|++++|.....++++++.+.++++++|+ ...|+.. ..++.
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 99999999999887788889999999998765 5577763 44554
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.4e-08 Score=93.96 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=68.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---------------
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~--------------- 175 (281)
+++|+|||+|.||..+|.+|.+. |++|+.+++...+ .+ +...|.... ....++++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~~~~-v~-~l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDINQHA-VD-TINRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCCHHH-HH-HHHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 9999888776432 22 233333210 01122222
Q ss_pred cCcCCEEEEccCCh----------hHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 176 ISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 176 l~~ADVViLavP~~----------~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
+++||+||+|+|.. .....++.+.+++++|++|++.+.+..
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 44899999999974 344466789999999999987665543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=87.90 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=73.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (281)
+++|||||.|.||..+|..+... |++|+++++..+. .+. ..+.|...+. ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 57999999999999999999998 9999999887542 222 2233321000 0134
Q ss_pred CHHhhcCcCCEEEEccCChhHHH--HHHHHHhcC-CCCcEEEE-eCCcchhhhhh
Q 023490 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCM-KPNSILGL-SHGFLLGHLQS 221 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~--vl~ei~~~m-KpgaILi~-aaG~~l~~l~~ 221 (281)
+. +.+++||+|+-++|.....+ ++.++-..+ +|+++|.. ++++.+..+..
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~ 131 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA 131 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 56 56899999999999977654 666777776 89998864 56666666554
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=95.17 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=75.8
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCC-------------ceec
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTEE 165 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G-------------~~~~ 165 (281)
.+++|||||.|.||..+|+.+... |++|+++++..+. .+. ..+.| +..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 368999999999999999999998 9999999887542 222 23344 232
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH--HHHHHHhcCCCCcEE-EEeCCcchhhhhh
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSIL-GLSHGFLLGHLQS 221 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~--vl~ei~~~mKpgaIL-i~aaG~~l~~l~~ 221 (281)
..+.++ +++||+||.++|.....+ ++.++...++++++| +..+.+.+..+..
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~ 132 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA 132 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 345655 679999999999977653 667877888999998 5778888766654
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-08 Score=83.51 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=68.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
++++ ++|+|||.|.||.++++.+++. | .+|.++++..++..+.+.+.+.........+.+++++++|+|+++
T Consensus 16 ~~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 16 ELKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeC
Confidence 4678 9999999999999999999987 6 578888876544333344444310000144777889999999999
Q ss_pred cCChhH-H-H-HHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQ-A-D-NYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~-~-~-vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+|+..+ . . .+.. ..++++.+++++.-..
T Consensus 89 ~~~~~~~~~~~~~~~--~~~~~~~~v~D~~~~~ 119 (155)
T cd01065 89 TPVGMKPGDELPLPP--SLLKPGGVVYDVVYNP 119 (155)
T ss_pred cCCCCCCCCCCCCCH--HHcCCCCEEEEcCcCC
Confidence 999775 1 1 1221 2368899988775443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=89.61 Aligned_cols=93 Identities=23% Similarity=0.368 Sum_probs=74.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..+.| ++++|||+|.+|..+++.|+.. |.+|.+++|+..+ .+.+.+.|+... .+.++.+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~~-~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSAH-LARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 46789 9999999999999999999998 9999999887543 455667776531 123567889999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
+|.. ++. +.+..|+++++|++.+
T Consensus 218 ~p~~----~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPAL----VLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChh----hhhHHHHHcCCCCcEEEEEc
Confidence 9863 343 7788999999998654
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=85.15 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=75.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~---------t~~~~~E~l~~ADVV 182 (281)
|+|+|||.|.||..+|..|... |++|.++.| .+ ..+...+.|+..... ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-PK-RAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-HH-HHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 999988887 33 334445556532110 123456667899999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcc-hhhhhh
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQS 221 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~-l~~l~~ 221 (281)
++++|.....++++++.+.++++++|+ +..|+. .+.+..
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~ 113 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP 113 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH
Confidence 999999888888888888888888664 667876 334443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=83.59 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=75.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~-------~t~~~~~E~l~~ADVViL 184 (281)
|+|+|||.|+||..+|..|... |++|.+.+|..+ ..+...+.|+..++ ....+.+++ +.+|+|++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5799999999999999999998 999988887543 23444445653200 112345554 89999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcE-EEEeCCcc-hhhhhh
Q 023490 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQS 221 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~-l~~l~~ 221 (281)
++|......+++++.+.+.++++ |++..|+. .+.++.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 99998888899999999988865 45778876 344443
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=91.30 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=98.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLavP~~~ 190 (281)
.+|||||+|+||+=+|.-+.+. |+.|+.++|.+- ...++++|..- +..+.++ -++.|+|++|+.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsdy--ssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSDY--SSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcchh--HHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 999988888753 34556666542 4455554 467999999999877
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeCCcch---hhhhhcccCCCCCceEEEeccCCCChh-hHHhhhhCccccCCCceeEEEe
Q 023490 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAV 265 (281)
Q Consensus 191 ~~~vl~ei~~~-mKpgaILi~aaG~~l---~~l~~~~~~~~~~i~VIrvmPntpg~~-vr~~y~~g~~~~~~g~~~~~av 265 (281)
+..++...-+. +|.|+++++.-.++. ..+++ .+|+|.+++.+|| +=||. +. -.++|+|-.+--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHp-mfGPksvn--------h~wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHP-MFGPKSVN--------HEWQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecC-CcCCCcCC--------CccccCceEEEE
Confidence 77777754444 899999887665553 44444 7899999999999 66776 31 124677776655
Q ss_pred ee
Q 023490 266 HQ 267 (281)
Q Consensus 266 ~~ 267 (281)
|-
T Consensus 189 vR 190 (480)
T KOG2380|consen 189 VR 190 (480)
T ss_pred ee
Confidence 43
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-07 Score=90.75 Aligned_cols=102 Identities=15% Similarity=0.194 Sum_probs=72.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~---------~t~~ 170 (281)
+++|||||.|.||..||+.+... |++|+++++..+. .+. ..+.|...+. ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 58999999999999999999999 9999999887542 221 2233421000 0134
Q ss_pred CHHhhcCcCCEEEEccCChhHH-H-HHHHHHhcCCCCcEEE-EeCCcchhhhh
Q 023490 171 DIYETISGSDLVLLLISDAAQA-D-NYEKIFSCMKPNSILG-LSHGFLLGHLQ 220 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~-~-vl~ei~~~mKpgaILi-~aaG~~l~~l~ 220 (281)
++++ +++||+||.++|..... + ++.++...++++++|. ..+.+.+..+.
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA 129 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIA 129 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHH
Confidence 6654 67999999999986654 3 6778888899998875 56777765543
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-07 Score=84.02 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=71.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--Cce------ecC--CCcCCHHhhc-CcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--G~~------~~~--~t~~~~~E~l-~~AD 180 (281)
|+|+|||.|.||.++|..|.+. |++|.++.|..+ ..+.-.+. +.. ... ....+.++.+ .++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 4799999999999999999999 999988887532 22222221 111 000 0124566666 5899
Q ss_pred EEEEccCChhHHHHHHHHHh-cCCCCc-EEEEeCCcch
Q 023490 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFLL 216 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~-~mKpga-ILi~aaG~~l 216 (281)
+|++++|+....++++++.+ ++++++ +|++..|+..
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99999999999999999988 888876 5567888843
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.3e-07 Score=77.35 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=75.3
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCCcee---------cCCCcCCH
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTE---------ENGTLGDI 172 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~~---------~~~t~~~~ 172 (281)
+|+|||.|.||..+|..+... |++|.++++..+ ..+.+ .+.|... .-....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 699999999999999999999 999999987643 11111 1111100 00113578
Q ss_pred HhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
+++. ++|+||=++|..... +++.++-+.++|+++|. ...++.+..+.. .++..-+++..|+=.|.
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~ 141 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPP 141 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SST
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEeccccc
Confidence 8877 999999999986654 38889999999999884 678888888775 22233356666664443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.5e-07 Score=85.71 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=73.0
Q ss_pred EEEEEccCchHHHHHHHHHhhh--hhccCCcEEEEEecCC---cccHHHHH-HC--------CceecC--CCcCCHHhhc
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSL--AEAKSDIVVKVGLRKG---SRSFAEAR-AA--------GFTEEN--GTLGDIYETI 176 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~--~~~~~G~~Viig~r~~---~~s~~~A~-~~--------G~~~~~--~t~~~~~E~l 176 (281)
+|+|||.|+.|.++|..|.+.- ..-.|+++|.++.|.. .+...... +. |+..-+ ....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998870 0000228999888732 11111111 10 221100 0135788999
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcE-EEEeCCcchh
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG 217 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l~ 217 (281)
++||+|++++|++...++++++.++++++++ |+++.|+...
T Consensus 81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 9999999999999999999999999998885 5688998754
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.7e-07 Score=85.69 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=73.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhh-hhccCCcEEEEEecCCcc----cHHHHHHCC--------ceecC--CCcCCHHhhc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR----SFAEARAAG--------FTEEN--GTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~-~~~~~G~~Viig~r~~~~----s~~~A~~~G--------~~~~~--~t~~~~~E~l 176 (281)
++|+|||.|++|.++|..|.+.- ....||++|.++.|+... ..+.-.+.+ +...+ ....|+++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 78999999999999999998870 000123788888776431 111111111 11000 0135788999
Q ss_pred CcCCEEEEccCChhHHHHHHHHHh--cCCCCcE-EEEeCCcch
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFS--CMKPNSI-LGLSHGFLL 216 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~--~mKpgaI-Li~aaG~~l 216 (281)
+++|+|++++|++...++++++.+ +++++++ |++++|+..
T Consensus 92 ~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 92 EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 999999999999999999999888 8888864 558999874
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=81.70 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=63.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|||||+|.||+.++++|.+.+ .++++. ++++..++..+.+.+.|... .+.+++++++++|+|++++|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 167765 45554433334455555421 14689999999999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 191 ~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
+.++..+.+. .|. +++.+.|
T Consensus 80 h~e~~~~aL~---aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVLA---AGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHH---cCCcEEEecch
Confidence 7777665543 444 4444444
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.1e-07 Score=85.18 Aligned_cols=76 Identities=18% Similarity=0.185 Sum_probs=62.9
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |+|+|||.| .||..+|..|.+. |+.|.+++++. .++.|++++||+|++
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 47999 999999996 9999999999999 99999886542 157789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++... .+++. .+|+|++|++++
T Consensus 209 avg~~~---~v~~~--~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPR---LIDAD--WLKPGAVVIDVG 231 (301)
T ss_pred ecCChh---cccHh--hccCCcEEEEec
Confidence 999864 33322 289999998864
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=81.16 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=57.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
|++|||||+|.||..+++.+.+. +.++++. ++++..++..+.+...+... +.+++|++.++|+|++++|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 1135544 44444333223334445442 568899989999999999998
Q ss_pred hHHHHHHHHHh
Q 023490 190 AQADNYEKIFS 200 (281)
Q Consensus 190 ~~~~vl~ei~~ 200 (281)
.+.++..+.+.
T Consensus 73 ~~~~~~~~al~ 83 (265)
T PRK13304 73 AVEEVVPKSLE 83 (265)
T ss_pred HHHHHHHHHHH
Confidence 87777666554
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-06 Score=80.73 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=96.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH------HC-Cceec--CCCcCCHHhhcCcCCE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------AA-GFTEE--NGTLGDIYETISGSDL 181 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~------~~-G~~~~--~~t~~~~~E~l~~ADV 181 (281)
+++|+|||.|+-|.++|+-|.+. |++|.++.|+.+...+.-. .. |+... -....|+++++++||+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 47999999999999999999999 9999988876321111110 00 11110 0124579999999999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-------hhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCcc
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-------~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~ 253 (281)
|++++|-+...++++++.+++++++++ +.+.|+.. +.+++ .+|.+. +.+ ..||+.-+.--+
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~--~~v---LSGPs~A~EVa~--- 143 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNP--IAV---LSGPSFAKEVAQ--- 143 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCe--EEE---EECccHHHHHhc---
Confidence 999999999999999888889888865 57888764 23443 445443 322 345555444344
Q ss_pred ccCCCceeEEEeeeCCCcchh
Q 023490 254 INGAGINSSFAVHQVLSEPLF 274 (281)
Q Consensus 254 ~~~~g~~~~~av~~d~~g~a~ 274 (281)
|.|+...|.-.....|.
T Consensus 144 ----g~pta~~vas~d~~~a~ 160 (329)
T COG0240 144 ----GLPTAVVVASNDQEAAE 160 (329)
T ss_pred ----CCCcEEEEecCCHHHHH
Confidence 67888777554443333
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=85.44 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=64.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee--c---------C-CCcCCHHhhcCcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E---------N-GTLGDIYETISGS 179 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~--~---------~-~t~~~~~E~l~~A 179 (281)
++|||||+|.||..+|.++. . |++|+.+++...+ .+... .|... | + -.+.+..+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~------~~~V~g~D~~~~~-ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K------SRQVVGFDVNKKR-ILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c------CCEEEEEeCCHHH-HHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 89999999999999999965 3 6888887776433 33322 33320 0 0 0123444679999
Q ss_pred CEEEEccCCh------hH-HHHH---HHHHhcCCCCcEEEEeCCcc
Q 023490 180 DLVLLLISDA------AQ-ADNY---EKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 180 DVViLavP~~------~~-~~vl---~ei~~~mKpgaILi~aaG~~ 215 (281)
|++|+|+|.. .. ..++ +.+.+++++|++|++.+-+.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 9999999965 12 2343 36889999999988755444
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=80.69 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=83.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hcCcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E---~l~~ADVViLavP~ 188 (281)
|+||.||+|.||..+.++|.+. |++|+.+++. ....+.+...|.+. ..+++| .+..--+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV~yD~n-~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVVGYDVN-QTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 9998777665 45677888888664 445555 46667899999999
Q ss_pred hhHH-HHHHHHHhcCCCCcEEEEeCCcchh-hhhhcccCCCCCceEEEe
Q 023490 189 AAQA-DNYEKIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 189 ~~~~-~vl~ei~~~mKpgaILi~aaG~~l~-~l~~~~~~~~~~i~VIrv 235 (281)
...+ .+++++.+.|.+|.+||+-+--... .++.......++++++.+
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~ 118 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDV 118 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEec
Confidence 8555 5999999999999999987553321 111111133456777654
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-06 Score=76.77 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=65.8
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|+|||- |.||+.+++.+++. |+.|. ++++|+|+||+|...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999997 99999999999999 98863 247999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
..++++++. .+|+|.++++-...+. ..+||..|| +-||+.
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HP-MfGp~~ 83 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHP-LFGPMS 83 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCC-CCCCCc
Confidence 888888753 3788999998743332 347999999 557443
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=76.87 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=59.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVVi 183 (281)
..+++| |+|+|+|+|+||..+|+.|.+. |++|++.++...+..+.....|... .+.++++. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 367899 9999999999999999999999 9999877765433222333435442 24455654 799999
Q ss_pred EccCChhHHHHHH-HHHhcCCCCcEEE
Q 023490 184 LLISDAAQADNYE-KIFSCMKPNSILG 209 (281)
Q Consensus 184 LavP~~~~~~vl~-ei~~~mKpgaILi 209 (281)
.+.... ++. +.++.|+.. +|+
T Consensus 91 p~A~~~----~I~~~~~~~l~~~-~v~ 112 (200)
T cd01075 91 PCALGG----VINDDTIPQLKAK-AIA 112 (200)
T ss_pred eccccc----ccCHHHHHHcCCC-EEE
Confidence 776543 333 444556543 444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-06 Score=82.21 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=68.3
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC--CCcCCHHhhcCcCCEEEEc
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--GTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~--~t~~~~~E~l~~ADVViLa 185 (281)
+.+ .++.|||.|.+|...++.++.. |.+|.++++...+........+..... ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 667 8899999999999999999998 999888887644322222334432100 0012466788999999999
Q ss_pred cCC--hhHHHHH-HHHHhcCCCCcEEEEeC
Q 023490 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~--~~~~~vl-~ei~~~mKpgaILi~aa 212 (281)
++. .....++ ++.+..||++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 853 2223345 47788899999988653
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=4e-06 Score=79.06 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=70.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+.| ++|+|||.|.||..+++.|+.. | .+|.+.+|...+..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 175 ~l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 175 NLKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISA 245 (311)
T ss_pred CccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEEC
Confidence 3789 9999999999999999999986 5 4788888876555566777765421 123467888999999999
Q ss_pred cCChhHHHHHHHHHhcC-CCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCM-KPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~m-KpgaILi~aa 212 (281)
+|......++.+..... +++.++++.+
T Consensus 246 t~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 246 TGAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 99866544555444333 3456777655
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.1e-06 Score=81.74 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=62.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----------------CCceecCCCcCCHHhh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----------------~G~~~~~~t~~~~~E~ 175 (281)
|+|+|||+|.||..+|..+ +. |++|+.+++..++ .+...+ .+.... ...+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD~d~~k-v~~l~~g~~~~~e~~l~~~l~~~~~~l~--~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALDILPSR-VAMLNDRISPIVDKEIQQFLQSDKIHFN--ATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEECCHHH-HHHHHcCCCCCCCcCHHHHHHhCCCcEE--Eecchhhh
Confidence 4799999999999999654 46 8999888776432 332222 111110 01246788
Q ss_pred cCcCCEEEEccCCh----------hH-HHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 176 ISGSDLVLLLISDA----------AQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 176 l~~ADVViLavP~~----------~~-~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++++|+|++++|.. .. ..+++++.. +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999965 22 345666766 79999887655444
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.6e-06 Score=79.80 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=61.9
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+++| |+|+||| .|.||..+|++|.+. |+.|.++..+. .+++|++++||+|+++
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 7999 9999999 999999999999998 99998885321 1457889999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++... .+++. ++++|++|++++
T Consensus 209 vg~~~---~v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPE---MVKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChh---hcchh--eecCCCEEEEcC
Confidence 99865 34432 299999998874
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.1e-06 Score=78.63 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=106.2
Q ss_pred cccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 70 FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 70 ~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+-++.|-|+-|.+..++-+-.|.++. |--.- --.-+.| |...|.|+|..|+.-|+.|+.+ |..|++..-.
T Consensus 177 PAiNVNDSVTKsKFDnLygcreSl~D-gikra--TDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiD 246 (434)
T KOG1370|consen 177 PAINVNDSVTKSKFDNLYGCRESLLD-GIKRA--TDVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEID 246 (434)
T ss_pred ceeeccchhhhhhccccccchhhhhh-hhhhh--hhheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccC
Confidence 44889999999999999888877442 11000 0023788 9999999999999999999998 9999888766
Q ss_pred CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCC
Q 023490 150 GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN 229 (281)
Q Consensus 150 ~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~ 229 (281)
+-.. -.|.-.|+. ...++|++++.||++..+--... +..+.+..||.++||...+-|..+ ++...+.- ..
T Consensus 247 PI~A-LQAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd~E-iDv~~L~~-~~ 316 (434)
T KOG1370|consen 247 PICA-LQAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFDTE-IDVKWLNT-PA 316 (434)
T ss_pred chHH-HHHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEeccccccce-eehhhccC-Cc
Confidence 5433 345567887 45899999999999998876432 345889999999999876666542 22222332 24
Q ss_pred ceEEEecc
Q 023490 230 IGVIAVCP 237 (281)
Q Consensus 230 i~VIrvmP 237 (281)
.+.+++-|
T Consensus 317 ~~~~~vk~ 324 (434)
T KOG1370|consen 317 LTWENVKP 324 (434)
T ss_pred ceeeeccc
Confidence 56666665
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.2e-06 Score=65.60 Aligned_cols=82 Identities=26% Similarity=0.297 Sum_probs=61.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|.+|+...+.++.. ..+.++. ++++...+....+++.|+.. +.+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 3799999999999999888876 1245655 44444333334466788874 789999998 79999999999
Q ss_pred hhHHHHHHHHHhc
Q 023490 189 AAQADNYEKIFSC 201 (281)
Q Consensus 189 ~~~~~vl~ei~~~ 201 (281)
..+.+++.+.+..
T Consensus 73 ~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 73 SSHAEIAKKALEA 85 (120)
T ss_dssp GGHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc
Confidence 9888877766554
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=66.90 Aligned_cols=112 Identities=20% Similarity=0.268 Sum_probs=79.5
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC----------cCCHHhhcCcCCEEE
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t----------~~~~~E~l~~ADVVi 183 (281)
|.|+|.|.||.-+|..|... |++|.+..|.. ..+.-++.|+...+.. ..+..+..+..|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99998888764 2344556676543211 011124678899999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEE-EEeCCcc-hhhhhhcccCCCCCceEEEecc
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~-l~~l~~~~~~~~~~i~VIrvmP 237 (281)
++++-.+....++.+.+++++++.| ++--|+. .+.+++ .++.+ .++..+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~ 124 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE---YFPRP-RVLGGVT 124 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC---HSTGS-GEEEEEE
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH---HcCCC-cEEEEEE
Confidence 9999999999999999999998654 5667777 345554 44443 5554443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.5e-05 Score=73.27 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=72.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec--CCC-------cCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~--~~t-------~~~~~E~l~~ADVV 182 (281)
++|+|||.|.||..+|..|.+. |++|.+..|.. .+...+.|+... ++. ..+..+.+..+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7899999999999999999999 99999888864 233344554321 010 01122356789999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-hhhhh
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQS 221 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-~~l~~ 221 (281)
++++|..+..+.++.+.+.++++.+| .+--|+.. +.+..
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~ 117 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE 117 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 99999988777888888888888765 46667764 34444
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-06 Score=71.75 Aligned_cols=96 Identities=19% Similarity=0.189 Sum_probs=68.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhcCcCCE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G---~~~~~~t~~~~~E~l~~ADV 181 (281)
.+++| +++.|||.|-+|++++..|.+. |.+ |.+.+|..++..+.+.+.+ +.. -.+.++.+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 47899 9999999999999999999999 885 8999998665555665552 211 114567778999999
Q ss_pred EEEccCChhHHHHHH-HHHhcCCCC-cEEEEeC
Q 023490 182 VLLLISDAAQADNYE-KIFSCMKPN-SILGLSH 212 (281)
Q Consensus 182 ViLavP~~~~~~vl~-ei~~~mKpg-aILi~aa 212 (281)
||.++|.... .+. +.+....+. .++++.+
T Consensus 79 vI~aT~~~~~--~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP--IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST--SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc--ccCHHHHHHHHhhhhceeccc
Confidence 9999997544 333 444443332 3777764
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.4e-06 Score=81.78 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCc---CCEEEEccCChhHHH-
Q 023490 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQAD- 193 (281)
Q Consensus 122 mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~----G~~~~~~t~~~~~E~l~~---ADVViLavP~~~~~~- 193 (281)
||..||++|.+. |++|.+++|..++..+..... |+.. ..+++|+++. +|+|++++|.....+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999999866544433322 3553 5688888875 899999999987665
Q ss_pred HHHHHHhcCCCCcEEEEeCCcc
Q 023490 194 NYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 194 vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+++++++.|.+|.+||+.+-..
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~ 92 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSN 92 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCC
Confidence 8899999999999999986543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.2e-06 Score=71.62 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=58.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC---------------------ceecCCCcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------------------FTEENGTLG 170 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G---------------------~~~~~~t~~ 170 (281)
|+|+|||+|-+|..+|..+.+. |++|+.++.. ++..+ ....| +.. ..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~g~D~~-~~~v~-~l~~g~~p~~E~~l~~ll~~~~~~~~l~~----t~ 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVIGVDID-EEKVE-ALNNGELPIYEPGLDELLKENVSAGRLRA----TT 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEEEE-S--HHHHH-HHHTTSSSS-CTTHHHHHHHHHHTTSEEE----ES
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEEEEeCC-hHHHH-HHhhccccccccchhhhhccccccccchh----hh
Confidence 7999999999999999999999 9998766543 22121 12222 121 34
Q ss_pred CHHhhcCcCCEEEEccCChh----------HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 171 DIYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~----------~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+.+++++++|++++|+|... ....++++.++++++++|++-+-+.
T Consensus 69 ~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp EHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS
T ss_pred hhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE
Confidence 67888999999999998421 2345678999999999987654433
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.6e-06 Score=81.12 Aligned_cols=128 Identities=23% Similarity=0.196 Sum_probs=98.8
Q ss_pred cccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 70 FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 70 ~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+.++.|.++-|...+|+-+..+..+.+ - .-. .=.-++| |++.|.|||..|+.+|++++.. |.+|++.+-.
T Consensus 172 Pai~VNDs~tK~~FDNrYGtgqS~~Dg-I-~Ra-Tn~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvD 241 (420)
T COG0499 172 PAINVNDSVTKSLFDNRYGTGQSLLDG-I-LRA-TNVLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVD 241 (420)
T ss_pred ceEeecchhhhcccccccccchhHHHH-H-Hhh-hceeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecC
Confidence 347888888888788877777663211 0 000 0123799 9999999999999999999988 9999998877
Q ss_pred CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcch
Q 023490 150 GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 150 ~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l 216 (281)
+-+ .-+|.-.||.+ ...+|+++.+|+++.++-.. +++. +.+..||+|+||..++-|..
T Consensus 242 PI~-AleA~MdGf~V-----~~m~~Aa~~gDifiT~TGnk---dVi~~eh~~~MkDgaIl~N~GHFd~ 300 (420)
T COG0499 242 PIR-ALEAAMDGFRV-----MTMEEAAKTGDIFVTATGNK---DVIRKEHFEKMKDGAILANAGHFDV 300 (420)
T ss_pred chH-HHHHhhcCcEE-----EEhHHhhhcCCEEEEccCCc---CccCHHHHHhccCCeEEecccccce
Confidence 544 34577789984 58999999999999998864 4676 78889999999988776764
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-05 Score=74.10 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=80.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc----------ccHHHHHHCCceecC---------CCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----------~s~~~A~~~G~~~~~---------~t~~~ 171 (281)
+++++|||.|.||..+|..+... |++|.+.+.+.+ ++.+...+.|...++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999998887 899999987632 111222222311110 00112
Q ss_pred HHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEecc
Q 023490 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmP 237 (281)
. +.+++||+|+=+++-.... +++.++-.+.+|++|| +..+++.+..+.+ ....|+ +++..|+
T Consensus 77 ~-~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~-~~~rpe--r~iG~HF 141 (307)
T COG1250 77 L-AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAE-ALKRPE--RFIGLHF 141 (307)
T ss_pred h-hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHH-HhCCch--hEEEEec
Confidence 2 2789999999999986654 3888999999999999 5788888877765 223333 3555554
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=81.99 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=76.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~---------~t 168 (281)
..+++|+|||.|.||..+|..+... |++|++++...+. .+. ..+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~-l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQKA-LDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999988 9999999876431 111 1122211000 00
Q ss_pred cCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
..+. +.+++||+||=++|..-.. +++.++-+.++|++||. ..+++.+..+..
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 438 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK 438 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 2344 5589999999999986654 38889999999999884 678888877665
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-05 Score=80.98 Aligned_cols=114 Identities=13% Similarity=0.130 Sum_probs=81.1
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCC-------------ceec
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAG-------------FTEE 165 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G-------------~~~~ 165 (281)
.+++|+|||.|.||..+|..+... |++|++.+...+. .+.+ .+.| +..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~~-l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~- 383 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQHS-LDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP- 383 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-
Confidence 468999999999999999999998 9999998876431 1111 1111 111
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccC
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPn 238 (281)
..+. +.+++||+||=++|..-.. +++.++-+.++|++||. ..+++.+..+.. ....| -+|+..|+=
T Consensus 384 ---~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~-~~~~p--~r~ig~Hff 452 (714)
T TIGR02437 384 ---TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK-ALKRP--ENFCGMHFF 452 (714)
T ss_pred ---eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh-hcCCc--ccEEEEecC
Confidence 2244 4579999999999987654 38889999999999984 678888877765 22222 245555543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.6e-05 Score=81.39 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=74.1
Q ss_pred CCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHHH-----------HHCCce-ecC--------CC
Q 023490 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFT-EEN--------GT 168 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~-~~~--------~t 168 (281)
.+++|+|||.|.||..+|..+. .. |++|++++...+ ..+.+ .+.|.. .+. ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999876 47 999999887642 11111 111110 000 01
Q ss_pred cCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
..+. +.+++||+||=++|..... +++.++-+..++++||. ..+++.+..+.+
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~ 430 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA 430 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH
Confidence 2344 5689999999999987664 38889999999999884 678888877765
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-05 Score=76.11 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=61.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |+|+|||. |.||..+|..|.+. |+.|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s~-------------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHSR-------------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46999 99999999 99999999999998 9999887221 1267789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++.... +++ .++|+|+++++++
T Consensus 208 avg~~~~---v~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHF---VTK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCcccc---CCH--HHccCCcEEEEec
Confidence 9998653 332 2399999999864
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=63.92 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=59.7
Q ss_pred EEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEE-ecCCcccHHHHHHCC-ceecCCCcCCHHhh-cCcCCEEEEccCC
Q 023490 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (281)
Q Consensus 113 tIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig-~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~-l~~ADVViLavP~ 188 (281)
+|+||| .|.+|..++..+... .++++... .++.+.....+...+ +........+.++. ..++|+|++++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 589999 599999999999874 15555433 333211111122221 11000000111111 2589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
..+.+++..+.+.+++|+++++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 98888777666778999999998875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.9e-05 Score=80.10 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=74.6
Q ss_pred CCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHHH-----------HHCCce-ecC--------CC
Q 023490 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFT-EEN--------GT 168 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~-~~~--------~t 168 (281)
.+++|+|||.|.||..+|..+. .. |++|.+++...+ ..+.+ .+.|.. .+. ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4689999999999999999887 77 999999887532 11111 111211 000 00
Q ss_pred cCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
..+. +.+++||+||=++|..... +++.++-++++|++||. ..+++.+..+.+
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~ 435 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA 435 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH
Confidence 2244 5689999999999987654 38889999999999985 678888877765
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=76.32 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=62.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhcCcCCEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~---G--~~~~~~t~~~~~E~l~~ADVV 182 (281)
.. ++|+|||.|.||..+++.+.... + .+|.+++|..++..+.+.+. | +.. ..+.++++++||+|
T Consensus 124 ~~-~~v~iiG~G~~a~~~~~al~~~~-----~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIV 193 (314)
T PRK06141 124 DA-SRLLVVGTGRLASLLALAHASVR-----PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADII 193 (314)
T ss_pred CC-ceEEEECCcHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEE
Confidence 45 99999999999999998776520 4 57889998765544444442 3 332 45788999999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+.++|.. ..++.. ..++||++|..
T Consensus 194 i~aT~s~--~pvl~~--~~l~~g~~i~~ 217 (314)
T PRK06141 194 SCATLST--EPLVRG--EWLKPGTHLDL 217 (314)
T ss_pred EEeeCCC--CCEecH--HHcCCCCEEEe
Confidence 9888865 234442 45799995543
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.8e-05 Score=81.64 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=75.0
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCcee-c------C--CCc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTE-E------N--GTL 169 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~-~------~--~t~ 169 (281)
-+++|+|||.|.||..+|..+... |++|++++...+ ..+. ..+.|... + + ...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 406 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT 406 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 458999999999999999999988 999998886642 1111 11112110 0 0 002
Q ss_pred CCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 170 ~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
.+. +.+++||+||=++|..... +++.++-+.++|++||. ..+++.+..+..
T Consensus 407 ~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 460 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA 460 (737)
T ss_pred CCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 344 4689999999999987664 38889999999999984 678888877765
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.8e-05 Score=75.23 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=65.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~---~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
.+++||||.|.||+.+++.+.... ...+|.+++|..++..+.+. +.|+.. ....+.+|++++||+|+++||
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence 489999999999999998886641 12478888887554333332 345321 115689999999999999998
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
... .++. ...+|||++|..++...
T Consensus 202 s~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 202 SRK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CCC--cEec--HHHcCCCCEEEecCCCC
Confidence 642 3443 23579999987665443
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=77.33 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=73.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G----~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
..||+||+|.||+.+|.|+.+. |+.|.+++|..++..+.-++.+ +.. ..+..++-..++.=--|+|.+.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~-~~sieefV~~Le~PRkI~lMVk 76 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP-AYSIEEFVASLEKPRKILLMVK 76 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc-cCcHHHHHHHhcCCceEEEEEe
Confidence 5799999999999999999999 9999999999876665544443 221 1112234445777888999998
Q ss_pred Ch-hHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DA-AQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~-~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
-. +...++++++|+|.+|.|||+.+-
T Consensus 77 AG~~VD~~I~~L~p~Le~gDIiIDGGN 103 (473)
T COG0362 77 AGTPVDAVIEQLLPLLEKGDIIIDGGN 103 (473)
T ss_pred cCCcHHHHHHHHHhhcCCCCEEEeCCC
Confidence 84 344589999999999999998765
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=78.03 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=66.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+.| ++++|||.|.||..+++.|+.. |. +|++++|...+..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 4789 9999999999999999999988 87 788888876554456666653210 123566788999999999
Q ss_pred cCChhH---HHHHHHHHhcC-CCCcEEEEeC
Q 023490 186 ISDAAQ---ADNYEKIFSCM-KPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~---~~vl~ei~~~m-KpgaILi~aa 212 (281)
++.... .+.+......= ..+.++++.+
T Consensus 250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 250 TGAPHPIIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred CCCCCcEEcHHHHHHHHhhccCCCeEEEEeC
Confidence 986442 22343322111 2345677765
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.1e-05 Score=69.56 Aligned_cols=103 Identities=21% Similarity=0.250 Sum_probs=72.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HCCceec-CCC--c----CCHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~G~~~~-~~t--~----~~~~E~l~~ADVVi 183 (281)
|+|+|||.|.||.-+|-.|.+. |.+|.+..|..+. .+.-+ +.|+... ++. . ....+.....|+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQR-LAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechHH-HHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 9999888875422 22222 2344321 111 0 01112346789999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-hhhhh
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQS 221 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-~~l~~ 221 (281)
++++-....+.++.+.+++.+++.| .+--|+.. +.+..
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~ 115 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA 115 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH
Confidence 9999988888889999999998865 46678774 34544
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.9e-05 Score=73.37 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=62.2
Q ss_pred cccCCCcEEEEEccCch-HHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~m-G~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||.|++ |+.++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 36899 99999999988 99999999998 9998876432 2367789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-. .+++. .++|||++|++++
T Consensus 208 avG~~---~~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKR---NVLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCc---CccCH--HHcCCCCEEEEcc
Confidence 99943 35553 6799999998764
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.4e-05 Score=74.35 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=58.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
..+.| ++++|||.|.||..+++.|+.. | .+|++++|...+..+.+.+.|.... ...+..+.+.++|+||.
T Consensus 176 ~~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~ 246 (417)
T TIGR01035 176 GSLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVIS 246 (417)
T ss_pred CCccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEE
Confidence 35889 9999999999999999999988 8 5788888876544445666554210 12356788999999999
Q ss_pred ccCChh
Q 023490 185 LISDAA 190 (281)
Q Consensus 185 avP~~~ 190 (281)
+++...
T Consensus 247 aT~s~~ 252 (417)
T TIGR01035 247 STGAPH 252 (417)
T ss_pred CCCCCC
Confidence 998644
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.1e-05 Score=78.45 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=55.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
+|.+ ++|+|||.|.||..+++.|... |. +|++++|...+..+.+.+. +....-..+.+..+++.++|+||.
T Consensus 263 ~l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 263 SHAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEE
Confidence 3788 9999999999999999999988 86 6888988865544555544 221100013466788999999999
Q ss_pred ccCC
Q 023490 185 LISD 188 (281)
Q Consensus 185 avP~ 188 (281)
+|+-
T Consensus 336 AT~s 339 (519)
T PLN00203 336 STSS 339 (519)
T ss_pred ccCC
Confidence 9875
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=67.17 Aligned_cols=98 Identities=15% Similarity=0.261 Sum_probs=64.3
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
+++|+|||+ |.||+.+++.+... .++++....+...+........++.. ..+++++++++|+|+.++|+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 478999998 99999999988764 15776554443322121112334432 468899998999999999988
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeCCcchhhhh
Q 023490 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQ 220 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpga-ILi~aaG~~l~~l~ 220 (281)
...+++...+.. |. +++-..|++.++.+
T Consensus 72 ~~~~~~~~al~~---G~~vvigttG~s~~~~~ 100 (257)
T PRK00048 72 ATLENLEFALEH---GKPLVIGTTGFTEEQLA 100 (257)
T ss_pred HHHHHHHHHHHc---CCCEEEECCCCCHHHHH
Confidence 776666654443 44 44445687765543
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.9e-05 Score=72.41 Aligned_cols=94 Identities=21% Similarity=0.164 Sum_probs=67.9
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhcCcCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~---G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
... ++++|||.|.||+.+++.+.... +. +|.+++|..++..+.+.+. ++... ..+.+++++++|+|+
T Consensus 123 ~~~-~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVi 193 (304)
T PRK07340 123 APP-GDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVV 193 (304)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEE
Confidence 355 99999999999999999997631 53 6888888765544444443 33221 347889999999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
.+||... .+++. .+|||++|..++...
T Consensus 194 taT~s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 194 TATTSRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred EccCCCC--ceeCc---cCCCCCEEEecCCCC
Confidence 9999754 35543 479999887666544
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.2e-05 Score=66.26 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=60.3
Q ss_pred cccCCCcEEEEEccCch-HHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~m-G~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||.|.| |..+|+.|... |.+|.+.+|.. .++.+.++++|+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 56999 99999999997 88899999998 88888887641 156688999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. ++..- .++++.+|++.+
T Consensus 94 at~~~~---ii~~~--~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKGD--MVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecHH--HccCCeEEEEcc
Confidence 999754 45421 467788888654
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0002 Score=67.88 Aligned_cols=107 Identities=19% Similarity=0.272 Sum_probs=78.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc--------CCHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--------GDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~--------~~~~E~l~~ADVVi 183 (281)
|+|.|+|.|.||.-++..|... |.+|.+..|... .+.-++.|...++... ....+.+..+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~~--~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSRR--LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHHH--HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 877777776532 4455566765432111 12235677899999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-hhhhhcccCCCCC
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSIGLDFPKN 229 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-~~l~~~~~~~~~~ 229 (281)
++++-.+..+.++.+.+.+++++.| ++--|+.. +.+++ .++..
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~ 117 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE 117 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc
Confidence 9999999999999999999999865 46677663 33444 44554
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=66.82 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=56.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEE-EecCCcccHHHHHHC--CceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vii-g~r~~~~s~~~A~~~--G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|++|||||+|+||+.+++.+... .++++.. +.+... ..+..... ++.. +.+++++-.+.|+|+.++|
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~-~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~ 70 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHS-IDAVRRALGEAVRV----VSSVDALPQRPDLVVECAG 70 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCC-HHHHhhhhccCCee----eCCHHHhccCCCEEEECCC
Confidence 57999999999999999999875 1345433 333221 11111212 3332 4578777566999999999
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
+..+.++..+.+. .|. +++...|
T Consensus 71 ~~~~~e~~~~aL~---aGk~Vvi~s~~ 94 (265)
T PRK13303 71 HAALKEHVVPILK---AGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHHHH---cCCCEEEeChH
Confidence 9877666665544 344 4444444
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=72.58 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=61.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-----------------C--ceecCCCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------------G--FTEENGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-----------------G--~~~~~~t~~~ 171 (281)
+|+|+|||+|.+|..+|..|... |.|++|+.++.... ..+...+. + +.. ..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~gvD~~~~-~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVVVVDISVP-RIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEEEEECCHH-HHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcC
Confidence 58999999999999999998876 33577876765422 12221100 1 111 235
Q ss_pred HHhhcCcCCEEEEccCC-h--------------hHHHHHHHHHhcCCCCcEEEEe
Q 023490 172 IYETISGSDLVLLLISD-A--------------AQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~-~--------------~~~~vl~ei~~~mKpgaILi~a 211 (281)
.++++++||++|+|+|. . ......+++.++++++++|++-
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ 126 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEK 126 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 67889999999999862 1 1123555788999999988743
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=69.99 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=65.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++++|||.|.||+.+++.+.... +. +|.+++|..++..+.+.+ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 89999999999999998876431 44 677888875544443332 24321 11467899999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|... .++. ..+|+|+.|+-++...
T Consensus 201 ~s~~--p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAKT--PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCCC--cchH---HhcCCCcEEEecCCCC
Confidence 9652 3443 5789999987665543
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=74.15 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=69.0
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee------cC-----CCc--CC---
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------EN-----GTL--GD--- 171 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~------~~-----~t~--~~--- 171 (281)
+.+ .++.|||.|.+|...++.++.. |.+|++.+++.. ..+.+++.|... ++ ++. .+
T Consensus 162 vp~-akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~~~-rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPP-AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTRPE-VKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 456 8999999999999999999998 988888777654 466777777653 00 000 00
Q ss_pred -------HHhhcCcCCEEEEcc--CChhHHHHHH-HHHhcCCCCcEEEEe
Q 023490 172 -------IYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLS 211 (281)
Q Consensus 172 -------~~E~l~~ADVViLav--P~~~~~~vl~-ei~~~mKpgaILi~a 211 (281)
+.|.++++|+||.++ |......++. +....||||++|+|.
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 345678999999977 3322334454 788999999998865
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=69.46 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=62.9
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||.|. +|..+|+.|... |..|.++.++. .++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 47999 9999999998 999999999988 99998887541 156788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+++-.. ++.+ .++|+|++|++.+-
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcCC
Confidence 998743 4443 25799999988654
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.2e-05 Score=70.31 Aligned_cols=94 Identities=13% Similarity=0.152 Sum_probs=67.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+++||||.|.||..+++.+.... .+ +|.+++|..++..+.+.+ .|+..+ ...+.+|++++||||+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~--~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVY-----NPKRIRVYSRNFDHARAFAERFSKEFGVDIR--PVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHHhcCCcEE--EeCCHHHHHhcCCEEEEe
Confidence 489999999999999999988751 44 788898886554443333 243221 146899999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|+-.. .+++ ...+|||+.|..++...
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCC
Confidence 99643 4554 13578999887666544
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.7e-05 Score=71.72 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.++++|||.|.|+..+++.+..-. .+ +|.+++|..++..+.+++ .++..+ ...+.+|++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRIV--ACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcEE--EeCCHHHHHhcCCEEEEe
Confidence 3489999999999999998887752 33 788888876543333322 233211 146899999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|+......+++. ..+|||+.|..++.+.
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVGGDC 228 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecCCCC
Confidence 975432245552 3579999887665544
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00047 Score=63.92 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=61.1
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEec-CCcccH--HHHHH-----CCceecCCCcCCHHhhcCcCCE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r-~~~~s~--~~A~~-----~G~~~~~~t~~~~~E~l~~ADV 181 (281)
|++|+||| +|.||+.+++.+... .++++....+ .++... ..+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 46899999 699999999999864 1677665444 322111 11121 23432 4578887667999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcchhh
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGH 218 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l~~ 218 (281)
|+.++|+....+++...+.+ |. +|+-..|++.++
T Consensus 72 VIdfT~p~~~~~~~~~al~~---g~~vVigttg~~~e~ 106 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALEH---GVRLVVGTTGFSEED 106 (266)
T ss_pred EEECCChHHHHHHHHHHHHC---CCCEEEECCCCCHHH
Confidence 99999998777766654433 33 444455766433
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=71.62 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=71.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
..|++ +++.|||.|.||.-+|+.|... |. +|+|.+|..++..+.|.+.|... -.+.++.+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 45899 9999999999999999999998 85 78999999888788899988542 224567788999999999
Q ss_pred ccCChh--HH-HHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAA--QA-DNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~--~~-~vl~ei~~~mKpgaILi~aa 212 (281)
+|.-.. .. ..+++....-+. -+++|.+
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~-~livDia 274 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR-LLIVDIA 274 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC-eEEEEec
Confidence 976432 22 245544443333 3445443
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00017 Score=69.44 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=68.9
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~---~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.++++|||.|.|+..+++.++.-. ++ +|.+++|..+...+.+. +.+.. ......+.++++++||+|+.+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~-----~~~~I~i~~r~~~~~e~~a~~l~~~~~~-~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVR-----DIREIRVYSRDPEAAEAFAARLRKRGGE-AVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhC-----CccEEEEEcCCHHHHHHHHHHHHhhcCc-cceeccCHHHHhhcCCEEEEe
Confidence 4589999999999999999998862 44 78889888654444332 22221 011256889999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
||... .++. ...++||++|..+++.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 4444 2357899999877753
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=63.46 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=63.0
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC----Cc--eecC-CCcCCHHhhcC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETIS 177 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~----G~--~~~~-~t~~~~~E~l~ 177 (281)
.+++| +++.|+|. |.+|+.+++.|... |.+|++..|...+..+.+.+. +. ...+ ....+..+.++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 46889 99999995 99999999999988 888888887644322222221 11 1100 00123347889
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++|+|+.++|..... ........+++.++++..
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 999999999976641 112222345677777653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=58.29 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=57.1
Q ss_pred EEEEEc-cCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCC----ceecCCCcC-CHHhhcCcCCEEEEc
Q 023490 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG----FTEENGTLG-DIYETISGSDLVLLL 185 (281)
Q Consensus 113 tIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G----~~~~~~t~~-~~~E~l~~ADVViLa 185 (281)
||+||| .|.+|+.+.+.|.+. ..++++ +..++.+.-.......+ +.. -... ...+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 699999 999999999999985 245543 33443311111222211 110 0011 123456999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+|.....++..++ +++|..|++.++
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~ 98 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSG 98 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSS
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCH
Confidence 9998777777765 567888998776
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00064 Score=65.36 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=61.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHHCCceec-----------CC---CcCCHHhh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYET 175 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~~G~~~~-----------~~---t~~~~~E~ 175 (281)
|.+|||+|+|.||+.+++.+... .+++++...+...... ..+++.|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46899999999999999988764 2677765555332211 12333332100 00 02357788
Q ss_pred cCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+.++|+|+.++|.....+...... +.|..+++.+|
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~~~ 110 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELYE---KAGVKAIFQGG 110 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHHH---HCCCEEEEcCC
Confidence 889999999999987766665433 34666776665
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=58.50 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-----cHHHH---HHCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-----SFAEA---RAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-----s~~~A---~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
++|+|+|+ |.||+.+++.+.+. .++++....++... ..... ...|+.. ..+++++++++|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999984 17876655444320 00000 1233443 46899999999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcchhhh
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHL 219 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l~~l 219 (281)
|-.+-+....+.++..+.+ +. +|+=..|++-.++
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSDEQI 106 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHHHHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCHHHH
Confidence 9999666666666655554 44 4555789875443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00038 Score=68.68 Aligned_cols=131 Identities=23% Similarity=0.284 Sum_probs=79.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc------------------ccHHHHHHCC-ceecCCCcCCH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------------------RSFAEARAAG-FTEENGTLGDI 172 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~------------------~s~~~A~~~G-~~~~~~t~~~~ 172 (281)
.+|||||+|-+|-.+|..+... |++|+-.+-... ...+++.+.| +.. ..++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecCh
Confidence 7899999999999999999888 998764442210 1122345555 332 3345
Q ss_pred HhhcCcCCEEEEccCCh--h--HH--H-HH---HHHHhcCCCCcEEEEe----CCcch----hhhhh-cccCCCCCceEE
Q 023490 173 YETISGSDLVLLLISDA--A--QA--D-NY---EKIFSCMKPNSILGLS----HGFLL----GHLQS-IGLDFPKNIGVI 233 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~--~--~~--~-vl---~ei~~~mKpgaILi~a----aG~~l----~~l~~-~~~~~~~~i~VI 233 (281)
++ ++.||++++|+|.. . +. . +. +.+.+.|++|++|++= .|-+- -.++. .|+.++.|+.+.
T Consensus 80 ~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~la 158 (436)
T COG0677 80 EE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLA 158 (436)
T ss_pred hh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEe
Confidence 44 66999999998852 1 11 1 22 3689999999998753 33221 12333 567777665443
Q ss_pred ----EeccCCCChhhHHhhhhCccccC
Q 023490 234 ----AVCPKGMGPSVRRLYVQGKEING 256 (281)
Q Consensus 234 ----rvmPntpg~~vr~~y~~g~~~~~ 256 (281)
|++| |.-++++=.--|-|.|
T Consensus 159 ysPERv~P---G~~~~el~~~~kVIgG 182 (436)
T COG0677 159 YSPERVLP---GNVLKELVNNPKVIGG 182 (436)
T ss_pred eCccccCC---CchhhhhhcCCceeec
Confidence 5555 4444444333333333
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00015 Score=71.57 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=59.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~ADVVi 183 (281)
..+.| +++.|||.|.||..+++.|... |. ++.+.+|...+..+.+.+.+ ... -.+.++.+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 46889 9999999999999999999988 85 68899998665556666654 221 01345678899999999
Q ss_pred EccCChh
Q 023490 184 LLISDAA 190 (281)
Q Consensus 184 LavP~~~ 190 (281)
.+|+...
T Consensus 248 ~aT~a~~ 254 (414)
T PRK13940 248 AAVNVLE 254 (414)
T ss_pred ECcCCCC
Confidence 9998643
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00024 Score=67.54 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=64.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~----G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++++|||.|.||..+++.+.... +. +|.+++|..++..+.+.+. |+... ...+.+++++++|+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~-----~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~--~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR-----DIRSARIWARDSAKAEALALQLSSLLGIDVT--AATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CccEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhccCCEEEEec
Confidence 89999999999999999997531 54 6888888765544444432 44321 1457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|... .++.. ..+++|++|...+
T Consensus 203 ~s~~--p~i~~--~~l~~g~~i~~vg 224 (326)
T TIGR02992 203 PSET--PILHA--EWLEPGQHVTAMG 224 (326)
T ss_pred CCCC--cEecH--HHcCCCcEEEeeC
Confidence 9743 34441 2478999876443
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.54 E-value=8e-05 Score=70.55 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=56.2
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.++++|||.|.||..+++.+.+.+ +. +|.+++|..++..+.+.+ .++..+ ...+.++++++||+|+.+
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~--~~~~~~~av~~aDii~ta 199 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPVV--AVDSAEEAVRGADIIVTA 199 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCEE--EESSHHHHHTTSSEEEE-
T ss_pred CCceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccce--eccchhhhcccCCEEEEc
Confidence 3489999999999999999998752 44 788888875433333322 233321 256899999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
||-.....+++ ...++||++|+.++...
T Consensus 200 T~s~~~~P~~~--~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 200 TPSTTPAPVFD--AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp ---SSEEESB---GGGS-TT-EEEE-S-SS
T ss_pred cCCCCCCcccc--HHHcCCCcEEEEecCCC
Confidence 99765323444 23689999887666544
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00026 Score=67.36 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=62.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.++|||||.|.||+.+++.+.... +. +|.+++|..++..+.+.+ .++..+ ...+.+++++ +|+|+++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVF-----DLEEVRVYDRTKSSAEKFVERMSSVVGCDVT--VAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC-----CceEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhh-CCEEEEe
Confidence 489999999999999999987541 44 456677665433333332 243211 1457888887 9999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
||... .+++ ...+|||++|..++...
T Consensus 201 Tps~~--P~~~--~~~l~~g~hV~~iGs~~ 226 (326)
T PRK06046 201 TPSRK--PVVK--AEWIKEGTHINAIGADA 226 (326)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 99753 4454 12468999887665543
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00046 Score=64.02 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=61.1
Q ss_pred CcEEEEEccCchH-HHHHHHHHhhhhhccCC--cE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEE
Q 023490 111 INQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG-~AiA~~Lra~~~~~~~G--~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViL 184 (281)
+.+|||||+|.++ ...+..+++. + +. |-++++..++..+.+++.|+.. .+.+.++++++ .|+|++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~I 73 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYI 73 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEE
Confidence 3789999999666 4588888776 4 33 3344566555556678888751 26789999987 599999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi 209 (281)
++|+..+.++..+. ++.|..|+
T Consensus 74 atp~~~H~e~~~~A---L~aGkhVl 95 (342)
T COG0673 74 ATPNALHAELALAA---LEAGKHVL 95 (342)
T ss_pred cCCChhhHHHHHHH---HhcCCEEE
Confidence 99999888766433 33455443
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00073 Score=62.48 Aligned_cols=91 Identities=26% Similarity=0.319 Sum_probs=61.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|||||+|.||+.+.+.+++- . -+++ +.++++..++..+.+...+... ..+++|.+++.|+|+=|..+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~--~--~~~e~v~v~D~~~ek~~~~~~~~~~~~----~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG--R--VDFELVAVYDRDEEKAKELEASVGRRC----VSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC--C--cceeEEEEecCCHHHHHHHHhhcCCCc----cccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999999862 0 0244 4556665444333333444332 4689999999999999999888
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 191 ~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
..+...+++.. |. +|+++-|
T Consensus 73 v~e~~~~~L~~---g~d~iV~SVG 93 (255)
T COG1712 73 VREYVPKILKA---GIDVIVMSVG 93 (255)
T ss_pred HHHHhHHHHhc---CCCEEEEech
Confidence 77766665543 33 4555544
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0004 Score=65.40 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=60.0
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||.|. .|++++..|... |..|.++.++. .++.+.++++|+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~t-------------------~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSRT-------------------QNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCCc-------------------hhHHHHhccCCEEEE
Confidence 47899 9999999998 999999999988 88888887631 145677899999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. .+.. +.+++|++++++.
T Consensus 209 AtG~~~---~v~~--~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIKK--DWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCCH--HHcCCCCEEEEEE
Confidence 996322 3442 3589999998764
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00034 Score=66.67 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A---~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.++++|||.|.||..+++.+.... .. +|.+++|..++..+.+ ++.++..+ ...+.+|++++||||+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEe
Confidence 3489999999999999999887641 33 7888988865543333 22244321 145789999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|+-.. .+++ ...+|||++|.-++.+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 98543 4554 13578999987665544
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00065 Score=65.37 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=51.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vii-g~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
.+|+|||+|+||+.+++.+.+. .+++++. +++.... ......++.. ..+.++++.+.|+|++|+|...
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~--~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~t 72 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE--TLDTETPVYA----VADDEKHLDDVDVLILCMGSAT 72 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH--HHhhcCCccc----cCCHHHhccCCCEEEEcCCCcc
Confidence 6899999999999999999765 2677654 3443212 1122234332 3467788899999999999876
Q ss_pred HHHHHHHH
Q 023490 191 QADNYEKI 198 (281)
Q Consensus 191 ~~~vl~ei 198 (281)
+.+...++
T Consensus 73 h~~~~~~~ 80 (324)
T TIGR01921 73 DIPEQAPY 80 (324)
T ss_pred CHHHHHHH
Confidence 65444433
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0006 Score=64.54 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=61.5
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||.|+ .|..++..|... |..|.++.++ ..++.+.+++||+|+.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8888887643 1267889999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++.. .++|+|++|++++
T Consensus 209 avG~p~---~v~~--~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPG---FIPG--EWIKPGAIVIDVG 231 (285)
T ss_pred cCCCcc---cccH--HHcCCCcEEEEcc
Confidence 995433 3332 5689999999865
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00092 Score=51.42 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=50.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
..+++ ++++|+|.|.+|..+++.+.+. +. +|.++++ |+++-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 44788 9999999999999999999987 53 5555543 99999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+++..... .++....++++.+|++.
T Consensus 61 ~~~~~~~~--~~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPV--LEEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCc--hHHHHHhcCCCCEEEec
Confidence 99874431 23356778899888754
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=61.00 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=44.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH--CCceec--C---CCcCCHHhhcCcCCEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--N---GTLGDIYETISGSDLV 182 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~--~G~~~~--~---~t~~~~~E~l~~ADVV 182 (281)
|+||+|||.|.||..+|..+... |. +|.+.+...+.....+.+ ...... . ....+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 58999999999999999998876 54 888888754322221211 110000 0 001344 568999999
Q ss_pred EEcc
Q 023490 183 LLLI 186 (281)
Q Consensus 183 iLav 186 (281)
+++.
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0023 Score=50.69 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=61.4
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hcCcCCEEEEccCCh
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLISDA 189 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E-~l~~ADVViLavP~~ 189 (281)
|-|+|+|.+|..+++.|++. +.+|++.++.. +..+.+.+.|+..-.+...+.+ + -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid~d~-~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVIDRDP-ERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEESSH-HHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEECCc-HHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 87888777664 3466777778654333333433 2 378999999999987
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
...-.+-..+..+.|.. ++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 65544444444444443 4444443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00092 Score=67.83 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=84.2
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec--CCC-------------cCC-
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGD- 171 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~--~~t-------------~~~- 171 (281)
..| .++.|||.|.+|...++.++.. |.+|++.+++. ...+.+++.|.... +.. ..+
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~D~~~-~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAFDTRP-EVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 467 9999999999999999999998 99877777664 45678888886510 000 001
Q ss_pred -------HHhhcCcCCEEEEccCChh--HHHHH-HHHHhcCCCCcEEEEeC---Ccchh-hhhhcccCCC-CCceEEEec
Q 023490 172 -------IYETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH---GFLLG-HLQSIGLDFP-KNIGVIAVC 236 (281)
Q Consensus 172 -------~~E~l~~ADVViLavP~~~--~~~vl-~ei~~~mKpgaILi~aa---G~~l~-~l~~~~~~~~-~~i~VIrvm 236 (281)
+.+.++++|+||-++-... ...++ ++.+..||||.+|++.+ |-.+. .... ...+. .+++++.+
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~-~~v~~~~gVti~Gv- 312 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPG-EVVVTDNGVTIIGY- 312 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCc-cceEeECCEEEEEe-
Confidence 0122367999999886422 33454 78999999999887653 21111 1100 01222 45555554
Q ss_pred cCCCC---hhhHHhhhhC
Q 023490 237 PKGMG---PSVRRLYVQG 251 (281)
Q Consensus 237 Pntpg---~~vr~~y~~g 251 (281)
+|.|+ .+..++|..+
T Consensus 313 ~n~P~~~p~~As~lla~~ 330 (509)
T PRK09424 313 TDLPSRLPTQSSQLYGTN 330 (509)
T ss_pred CCCchhHHHHHHHHHHhC
Confidence 35553 3455677775
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00029 Score=64.90 Aligned_cols=91 Identities=19% Similarity=0.115 Sum_probs=60.0
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hcCcCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~---G~~~~~~t~~~~~E-~l~~ADVVi 183 (281)
.++ +++.|+|.|.+|++++..|.+. |.+|.+.+|...+..+.+.+. +... ..+.++ .+.++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 568 9999999999999999999988 889988888754433333332 2111 123333 346899999
Q ss_pred EccCChhHHH----HHHHHHhcCCCCcEEEEe
Q 023490 184 LLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 184 LavP~~~~~~----vl~ei~~~mKpgaILi~a 211 (281)
.++|...... .+. ...++++.+++++
T Consensus 184 natp~gm~~~~~~~~~~--~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVP--AEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCC--HHHcCCCCEEEEe
Confidence 9999742111 111 2346677777655
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00085 Score=58.46 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=54.1
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++..|... |..|.+...+. .++++.+++||+|+.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~T-------------------~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSKT-------------------KNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TTS-------------------SSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCCC-------------------CcccceeeeccEEee
Confidence 46999 999999988 5999999999999 99888765431 267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++.-.. +++ ..++|||++||+++-
T Consensus 86 a~G~~~---~i~--~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 86 AVGKPN---LIK--ADWIKPGAVVIDVGI 109 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--C
T ss_pred eecccc---ccc--cccccCCcEEEecCC
Confidence 998643 344 346899999987653
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=59.07 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=58.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||.|.+|...++.|... |.+|++..+...+........+ +...... -.++.+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~--~~~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQKE--FEPSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEecC--CChhhcCCceEEEE
Confidence 67999 9999999999999999999998 9888887765333222222333 3221111 11345889999999
Q ss_pred ccCChhHHHHHHH
Q 023490 185 LISDAAQADNYEK 197 (281)
Q Consensus 185 avP~~~~~~vl~e 197 (281)
++.+.+....+.+
T Consensus 77 aT~d~elN~~i~~ 89 (202)
T PRK06718 77 ATNDPRVNEQVKE 89 (202)
T ss_pred cCCCHHHHHHHHH
Confidence 9999877665543
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00052 Score=68.74 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=53.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+++| ++++|||.|.+|.+++..+.+. |.+|.+++|...+..+.+.+.+... ....+.. .+.++|+||.+
T Consensus 328 ~~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVIna 397 (477)
T PRK09310 328 IPLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINC 397 (477)
T ss_pred CCcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEc
Confidence 45788 9999999999999999999998 9998888876443333333332211 0011222 26789999999
Q ss_pred cCChh
Q 023490 186 ISDAA 190 (281)
Q Consensus 186 vP~~~ 190 (281)
+|...
T Consensus 398 tP~g~ 402 (477)
T PRK09310 398 LPPSV 402 (477)
T ss_pred CCCCC
Confidence 99864
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00079 Score=57.35 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=59.9
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |+|.|||-+ ..|..++..|.+. |..|.+.+++. .++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~t-------------------~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWKT-------------------IQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCCC-------------------cCHHHHHhhCCEEEE
Confidence 47999 999999955 8899999999988 99988775431 256788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
++.-.. +++ .+.+|||+++++.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 999763 455 2358999998854
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00012 Score=71.48 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=77.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
...+.| .++|+||+|..|+++++.+++| |+.|+.++..-..-.+.+.-.+.+ .++.|++-++|-+.+
T Consensus 173 ~~~~~G-~~~g~~g~gr~g~av~~~A~af------g~~~ifydp~~~~g~~~~lg~~rV------ytlqd~~~~sd~~S~ 239 (435)
T KOG0067|consen 173 LARIRG-PTLGLIGFGRTGQAVALRAKAF------GFVVIFYDPYLIDGIDKSLGLQRV------YTLQDLLYQSDCVSL 239 (435)
T ss_pred cccccc-cceeeeccccccceehhhhhcc------cceeeeecchhhhhhhhhccccee------cccchhhhhccceee
Confidence 456788 9999999999999999999999 998877766543333333333333 368899999999999
Q ss_pred ccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcchh
Q 023490 185 LISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLLG 217 (281)
Q Consensus 185 avP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l~ 217 (281)
+|..+++.+ +++ --...|+.|+.++ -+.|..++
T Consensus 240 hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvd 275 (435)
T KOG0067|consen 240 HCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVD 275 (435)
T ss_pred ecccCcccccccccccceeecccceEeeecccccCC
Confidence 999999876 666 4667899999876 56676653
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00038 Score=67.02 Aligned_cols=111 Identities=20% Similarity=0.121 Sum_probs=74.8
Q ss_pred hhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec--CCCcCC
Q 023490 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGD 171 (281)
Q Consensus 94 vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~--~~t~~~ 171 (281)
.++|+=-+--+...... -++.|||.|-.|..-|+-+... |-+|.+.+.+..+-...-...+...+ -.+...
T Consensus 152 ~~GG~GvllgGvpGV~~-~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~ 224 (371)
T COG0686 152 TNGGKGVLLGGVPGVLP-AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSN 224 (371)
T ss_pred ccCCceeEecCCCCCCC-ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHH
Confidence 55555444333333444 6899999999999999988766 88999998874432222222332210 112345
Q ss_pred HHhhcCcCCEEEEc--cCChhHHHHH-HHHHhcCCCCcEEEEe
Q 023490 172 IYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLS 211 (281)
Q Consensus 172 ~~E~l~~ADVViLa--vP~~~~~~vl-~ei~~~mKpgaILi~a 211 (281)
++|.+.++|+||-+ +|-.....+. ++..++||||++|+|+
T Consensus 225 iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 225 IEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred HHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 78999999999964 5666666655 4889999999998754
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0007 Score=66.63 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=57.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHC--Cc---eecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA--GF---TEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~--G~---~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|.|||+|.+|+.+|..|.+. | .+|.+++|..++..+.+... .+ ..+......+.+++++.|+||.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEE
Confidence 58999999999999999999888 6 89999999855433322221 11 1110112246689999999999
Q ss_pred ccCChhHHHHHH
Q 023490 185 LISDAAQADNYE 196 (281)
Q Consensus 185 avP~~~~~~vl~ 196 (281)
+.|+.....+++
T Consensus 75 ~~p~~~~~~i~k 86 (389)
T COG1748 75 AAPPFVDLTILK 86 (389)
T ss_pred eCCchhhHHHHH
Confidence 999987766554
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00059 Score=64.94 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=62.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++++|||.|.+|++++..+.... +. +|.+++|..++..+.+.+ .|+.. ....+.++++.++|+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999888630 43 688888875544444432 24432 11457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
|... .++.. ..+++|+.|+..
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~v 226 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAM 226 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEee
Confidence 8743 34542 236788876543
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00062 Score=63.13 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=55.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhcCcCCEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVL 183 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~-~~~~E~l~~ADVVi 183 (281)
.++.| +++.|||.|.+|++++..|... | .+|.+.+|..++..+.+.+.+... .-.. .+..+.+.++|+||
T Consensus 119 ~~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 119 VDLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLII 190 (278)
T ss_pred CCCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEE
Confidence 35788 9999999999999999999988 8 589999987654444444332110 0001 13357788999999
Q ss_pred EccCChh
Q 023490 184 LLISDAA 190 (281)
Q Consensus 184 LavP~~~ 190 (281)
.++|...
T Consensus 191 naTp~g~ 197 (278)
T PRK00258 191 NATSAGM 197 (278)
T ss_pred ECCcCCC
Confidence 9999754
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0029 Score=59.84 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=60.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEE-EecCCc-ccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vii-g~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.+|||||.|+||..++..+... .++++.. .++..+ ...+.+++.|+.. +..+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998777754 1455543 333322 1235677788753 1447788875 5788999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
...+.++..+.. +.|..+++-.
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdek 95 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLT 95 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECC
Confidence 988877665443 3477665543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00052 Score=67.05 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=63.4
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC-----Cce-ecCCCcCCHHhhcCcCCEE
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFT-EENGTLGDIYETISGSDLV 182 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~-----G~~-~~~~t~~~~~E~l~~ADVV 182 (281)
+.++++|||.|.|+..+++.+.... .++ +|.+++|..++..+.+.+. |+. .+ ...+.+|++++||||
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~--~~~s~~eav~~ADIV 227 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVE--VVDSIEEVVRGSDIV 227 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEE--EeCCHHHHHcCCCEE
Confidence 4589999999999999999988741 013 7888888865433333222 221 10 146899999999999
Q ss_pred EEccCChh----HHHHHHHHHhcCCCCcEEEEe
Q 023490 183 LLLISDAA----QADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 183 iLavP~~~----~~~vl~ei~~~mKpgaILi~a 211 (281)
+.+|+... ...+++ ...+|||++|+..
T Consensus 228 vtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~i 258 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVK--REWVKPGAFLLMP 258 (379)
T ss_pred EEccCCCCCCCCcCcEec--HHHcCCCcEEecC
Confidence 99997533 123554 2357899887643
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=62.28 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=58.8
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceec-CCCcCCHHh-hcCcCCEEEEcc
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIYE-TISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~-~~t~~~~~E-~l~~ADVViLav 186 (281)
|++|+|||. |.+|+.+++.|.+. .+++++...++.+.....+...+ +... +..+.+.++ ..+++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 479999996 99999999999865 14565443333221111222111 1100 001222222 557899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC-cch
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG-FLL 216 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG-~~l 216 (281)
|...+.++..+..+ .|..|++.++ |.+
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~~fR~ 104 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSADFRL 104 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCcccCC
Confidence 99877777766543 5888887654 544
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0021 Score=60.84 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=44.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH---CC----c--eecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AG----F--TEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~---~G----~--~~~~~t~~~~~E~l~~ADV 181 (281)
++|+|||.|.||..+|..+... |. +|++.+.........+.. .+ . .. ....+.++ +++||+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i--~~t~d~~~-~~~aDi 72 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKV--TGTNNYAD-TANSDI 72 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEE--EecCCHHH-hCCCCE
Confidence 6899999999999999999887 65 788777653321111110 00 0 11 01246666 899999
Q ss_pred EEEccC
Q 023490 182 VLLLIS 187 (281)
Q Consensus 182 ViLavP 187 (281)
||++.+
T Consensus 73 VIitag 78 (305)
T TIGR01763 73 VVITAG 78 (305)
T ss_pred EEEcCC
Confidence 999888
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=61.40 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=94.0
Q ss_pred CcEEEEEccCch--------------------HHHHHHHHHhhhhhccCCcEEEEEecCC----cccHHHHHHCCceecC
Q 023490 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEEN 166 (281)
Q Consensus 111 ~ktIGIIG~G~m--------------------G~AiA~~Lra~~~~~~~G~~Viig~r~~----~~s~~~A~~~G~~~~~ 166 (281)
++||.|.|.||+ |..+|-.+... |++|+.++... ...++.-+..|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 367777777776 55666666666 99999887653 23356677889886
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHH-HHHHHHHhcCCCCcEEEEeCCcc---h-hhhhhcccCC-CCCceEEEeccC-C
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL---L-GHLQSIGLDF-PKNIGVIAVCPK-G 239 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~-~vl~ei~~~mKpgaILi~aaG~~---l-~~l~~~~~~~-~~~i~VIrvmPn-t 239 (281)
..|-.|+++.+++.+|-+|-...+ .+.+++++++..|++|.-.+-+. + ..++ ..+.. ++|+-|-..||- .
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE-~~Lr~kR~dVGvssmHPAgv 149 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLE-GELRTKREDVGVSSMHPAGV 149 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhh-hhhcCchhhcCccccCCCCC
Confidence 456778999999999999998655 57779999999999997444333 2 2343 23333 367777788885 4
Q ss_pred CChhhHHhhhhC
Q 023490 240 MGPSVRRLYVQG 251 (281)
Q Consensus 240 pg~~vr~~y~~g 251 (281)
||.+-.+.|+-+
T Consensus 150 PGtp~h~~yvia 161 (340)
T COG4007 150 PGTPQHGHYVIA 161 (340)
T ss_pred CCCCCCceEEEe
Confidence 888888888876
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0023 Score=62.06 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=56.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcC---CHHhh-cCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG---DIYET-ISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~---~~~E~-l~~ADVViLav 186 (281)
|+|.|+|+|.+|..+++.|++. |++|++.++.... .+..++ .|+..-.+... .++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~~~~-~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTDEER-LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECCHHH-HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 9998887775433 333333 44332111122 23445 78999999999
Q ss_pred CChhHHHHHHHHHhcC
Q 023490 187 SDAAQADNYEKIFSCM 202 (281)
Q Consensus 187 P~~~~~~vl~ei~~~m 202 (281)
+.......+......+
T Consensus 74 ~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 74 DSDETNMVACQIAKSL 89 (453)
T ss_pred CChHHHHHHHHHHHHh
Confidence 9866544443333333
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.002 Score=58.49 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=64.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc---EEEEEecCC----ccc-------HHHHHHCCceecCCCcCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~----~~s-------~~~A~~~G~~~~~~t~~~ 171 (281)
..+++ +++.|+|.|.+|.++|..|.+. |. ++.+.+|++ .+. .+.+++.+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 46889 9999999999999999999987 86 488888873 221 22333332111 0126
Q ss_pred HHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+.+.++++|+||-++|+.... .+....|.++.+|.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999853322 25566677777766433
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00092 Score=62.61 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=55.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcCcC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGS 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G-----~~~~~~t~~~~~E~l~~A 179 (281)
..+.+ +++.|||.|-+|++++..|... |. +|.+.+|...+..+.+.+.+ ... ....+..+.++++
T Consensus 123 ~~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~a 193 (284)
T PRK12549 123 PDASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAA 193 (284)
T ss_pred cCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCC
Confidence 35788 9999999999999999999988 87 78889887655444444321 111 0123445678899
Q ss_pred CEEEEccCCh
Q 023490 180 DLVLLLISDA 189 (281)
Q Consensus 180 DVViLavP~~ 189 (281)
|+||.++|..
T Consensus 194 DiVInaTp~G 203 (284)
T PRK12549 194 DGLVHATPTG 203 (284)
T ss_pred CEEEECCcCC
Confidence 9999999964
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0033 Score=60.05 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=62.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcC-----cCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~-----~ADVViL 184 (281)
.+|||||.|+||..++..+... .++++....+.+. ...+.+++.|+.. ++.+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 6799999999999988887764 1456553333322 2335677888763 1357888884 5899999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|...+.++..+.. +.|..+++...
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999987776665543 45777776543
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0027 Score=57.52 Aligned_cols=80 Identities=21% Similarity=0.153 Sum_probs=56.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH-HHHHCCceecCCCcCC---HHhh-cCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~-~A~~~G~~~~~~t~~~---~~E~-l~~ADVViLav 186 (281)
|++.|||+|..|..+|+.|.+. |++|++.++..+...+ .+.+.+...-.+...+ +.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9999888877544333 1222433221112222 4455 88999999999
Q ss_pred CChhHHHHHHH
Q 023490 187 SDAAQADNYEK 197 (281)
Q Consensus 187 P~~~~~~vl~e 197 (281)
......-++-.
T Consensus 75 ~~d~~N~i~~~ 85 (225)
T COG0569 75 GNDEVNSVLAL 85 (225)
T ss_pred CCCHHHHHHHH
Confidence 99776655543
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00048 Score=59.28 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=65.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce---ec----------------
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---EE---------------- 165 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~---~~---------------- 165 (281)
+..+.. .+|.|+|.|+.|..-++.+... |.+|++.+.... ..+.....+.. .+
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDERPE-RLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESSHH-HHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCCHH-HHHhhhcccCceEEEcccccccccccchhhhh
Confidence 456667 8999999999999999999998 999888876532 23333344322 10
Q ss_pred ---CCCcCCHHhhcCcCCEEEE--ccCChhHHHHHH-HHHhcCCCCcEEEEe
Q 023490 166 ---NGTLGDIYETISGSDLVLL--LISDAAQADNYE-KIFSCMKPNSILGLS 211 (281)
Q Consensus 166 ---~~t~~~~~E~l~~ADVViL--avP~~~~~~vl~-ei~~~mKpgaILi~a 211 (281)
..+...+.+.++.+|+||. +.|......++. +.+..|||+.+|+|.
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDi 138 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDI 138 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEET
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEE
Confidence 0001136688999999996 445555666665 888999999999875
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0032 Score=50.12 Aligned_cols=76 Identities=18% Similarity=0.161 Sum_probs=51.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
-+++| +++.|||.|.+|..=++.|.+. |.+|.+..+.. +. .+..+... ...+++.+.++|+|+++
T Consensus 3 l~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~----~~-~~~~i~~~---~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 3 LDLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI----EF-SEGLIQLI---RREFEEDLDGADLVFAA 67 (103)
T ss_dssp E--TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE----HH-HHTSCEEE---ESS-GGGCTTESEEEE-
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch----hh-hhhHHHHH---hhhHHHHHhhheEEEec
Confidence 46899 9999999999999999999998 99998887653 11 12223221 22455779999999999
Q ss_pred cCChhHHHHHH
Q 023490 186 ISDAAQADNYE 196 (281)
Q Consensus 186 vP~~~~~~vl~ 196 (281)
+.+....+.+.
T Consensus 68 t~d~~~n~~i~ 78 (103)
T PF13241_consen 68 TDDPELNEAIY 78 (103)
T ss_dssp SS-HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99877665444
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0022 Score=55.16 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=58.2
Q ss_pred ccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcC
Q 023490 101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGS 179 (281)
Q Consensus 101 f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~A 179 (281)
|++. .+|+| ++|.|||.|.+|...++.|.+. |.+|.+....-. . +..+.+ +....+.+. ++-++++
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~~--~-~l~~l~~i~~~~~~~~--~~dl~~a 71 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEIC--K-EMKELPYITWKQKTFS--NDDIKDA 71 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCccC--H-HHHhccCcEEEecccC--hhcCCCc
Confidence 4433 68999 9999999999999999999998 998877753321 2 222222 222111111 2347899
Q ss_pred CEEEEccCChhHHHHHHHHH
Q 023490 180 DLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~ 199 (281)
|+|+.++.+.+....+.+..
T Consensus 72 ~lViaaT~d~e~N~~i~~~a 91 (157)
T PRK06719 72 HLIYAATNQHAVNMMVKQAA 91 (157)
T ss_pred eEEEECCCCHHHHHHHHHHH
Confidence 99999999887766555443
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0037 Score=58.78 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=46.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHHC-------C--ceecCCCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAA-------G--FTEENGTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~~-------G--~~~~~~t~~~~~E~l~~AD 180 (281)
++|+|||.|.+|.++|..|... | .+|.++++..+.....+.+. + ... .....+.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i----~~~~~~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI----KAGDYSDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE----EcCCHHHhCCCC
Confidence 5899999999999999999887 7 47888887654433333321 1 111 112335589999
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+|++++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99998875
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0026 Score=61.46 Aligned_cols=90 Identities=17% Similarity=0.241 Sum_probs=57.8
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceec-----------C---CCcCCHHhhcCc
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------N---GTLGDIYETISG 178 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~-----------~---~t~~~~~E~l~~ 178 (281)
|||+|+|.||+.+++.+... .+++|+...+...+. ...+...|+... + ....+++|++++
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 167776555543221 133443332210 0 002468899999
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
+|+|+.|+|........ +.+..++++++|+
T Consensus 76 vDiVve~Tp~~~~~~na-~~~~~~GakaVl~ 105 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK-PLYEKAGVKAIFQ 105 (333)
T ss_pred CCEEEECCCCCCChhhH-HHHHhCCcCEEEE
Confidence 99999999986653322 4555677777664
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0017 Score=58.58 Aligned_cols=94 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC-cCC----HHhhcCcC
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-LGD----IYETISGS 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t-~~~----~~E~l~~A 179 (281)
.+++| |++.|||-+ ..|..+|..|... |..|.+++.+.............. .+ ..+ +.|.+++|
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs---~t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE---KHHVTDEEAMTLDCLSQS 127 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc---cccccchhhHHHHHhhhC
Confidence 47999 999999976 7899999999988 999988864322110000000000 00 012 67899999
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|+||.+++-... .+. .+++|+|++||+++-
T Consensus 128 DIVIsAvG~~~~--~i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 128 DVVITGVPSPNY--KVP--TELLKDGAICINFAS 157 (197)
T ss_pred CEEEEccCCCCC--ccC--HHHcCCCcEEEEcCC
Confidence 999999997542 133 245889999998764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0041 Score=58.52 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=49.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLavP~~~ 190 (281)
++|||||+|.||+.+++.|..-. ..++++....++.....+.... .... +.+++++ ..+.|+|+=|.++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~~~-~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPALAG-RVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHhhc-cCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 68999999999999999987530 0035554434443211111111 1222 5678886 678888888888776
Q ss_pred HHHHHHHHH
Q 023490 191 QADNYEKIF 199 (281)
Q Consensus 191 ~~~vl~ei~ 199 (281)
..+.-..++
T Consensus 75 v~e~~~~iL 83 (267)
T PRK13301 75 IAEHAEGCL 83 (267)
T ss_pred HHHHHHHHH
Confidence 655554443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0047 Score=58.76 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=45.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHH--C-----C--ceecCCCcCCHHhhcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA--A-----G--FTEENGTLGDIYETIS 177 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~--~-----G--~~~~~~t~~~~~E~l~ 177 (281)
.+. +||+|||.|+||.+++..+... | .++.+.+...+.....+.+ . + ...+ ...+.+ .++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~--~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL--GTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEE--eCCCHH-HhC
Confidence 356 8999999999999999998887 6 4777777654322211111 1 1 1110 123444 789
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
+||+|+++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999998
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=61.28 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.+ ..|+.+|..|... |..|.++.++. .++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t-------------------~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKT-------------------ENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecCh-------------------hHHHHHHhhCCEEEE
Confidence 47999 999999999 9999999999988 88888776431 257788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-. .++.+ .++|||++|++++
T Consensus 202 Avgk~---~lv~~--~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFITP--DMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccCH--HHcCCCcEEEEee
Confidence 99743 34542 1269999998765
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0042 Score=60.40 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=72.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhc-cCCcEEEEEecCCccc---HHHHHH-----------CCcee-cC-CCcCCHHh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKGSRS---FAEARA-----------AGFTE-EN-GTLGDIYE 174 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~-~~G~~Viig~r~~~~s---~~~A~~-----------~G~~~-~~-~t~~~~~E 174 (281)
++|+|||.||=|.++|+.+...-.+. -|..+|.++.+...-. ....+- .|+.. ++ -...|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 89999999999999999987753222 2234566554332110 011110 00000 00 01357899
Q ss_pred hcCcCCEEEEccCChhHHHHHHHHHhcCCCCcE-EEEeCCcch
Q 023490 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaI-Li~aaG~~l 216 (281)
++++||+++..+|.+-...+.+++..++||++. |++..||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999996 668888875
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.004 Score=59.92 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=58.6
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCc-eec-CCCc--CCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGF-TEE-NGTL--GDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~-~~~-~~t~--~~~~E~l~~ADVViLa 185 (281)
++|+|||. |.+|+.+++.|... .+++++ +..++.+.........+. ... +..+ .+.++.++++|+|++|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999997 99999999999865 234655 333332111111111210 000 0001 2456666789999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCC-cch
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHG-FLL 216 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG-~~l 216 (281)
+|.....++..++.. .|..||+.++ |.+
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSADFRL 104 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChhhhc
Confidence 999877777766543 5788887655 443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0077 Score=57.26 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=64.2
Q ss_pred hHHHHHHHHHhhhhhccCCcEEEEEecCCcc------cHH-----------HHHHCCceecC---------CCcC--CHH
Q 023490 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFA-----------EARAAGFTEEN---------GTLG--DIY 173 (281)
Q Consensus 122 mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~------s~~-----------~A~~~G~~~~~---------~t~~--~~~ 173 (281)
||..+|..+... |++|++++...+. ..+ ...+.|...+. .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 789999999888 9999999887531 011 11222221000 0011 256
Q ss_pred hhcCcCCEEEEccCChhHHH--HHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 174 ETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 174 E~l~~ADVViLavP~~~~~~--vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
+++++||+||-++|.....+ ++.++.+.++|+++|. -.+++.+..+..
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~ 125 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR 125 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh
Confidence 88999999999999977654 7779999999999884 556667766654
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0032 Score=53.11 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=45.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-------~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
+||+|||. |++|.++|..|... +..-++.+.++........+.+ ..... .......+.+++||+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~----~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDivv 74 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ----GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADIVV 74 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT----TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC----CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccEEE
Confidence 68999999 99999999999987 2233777777763322222221 11110 00225568899999999
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
+..
T Consensus 75 ita 77 (141)
T PF00056_consen 75 ITA 77 (141)
T ss_dssp ETT
T ss_pred Eec
Confidence 976
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0018 Score=61.28 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=60.4
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-| ..|..+|..|... |..|.++.... .++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~t-------------------~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHILT-------------------KDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCCc-------------------HHHHHHHHhCCEEEE
Confidence 47899 999999999 9999999999988 99888774321 156688999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|||++|++++
T Consensus 207 AvG~p~---~i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPD---LIK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCC---cCC--HHHcCCCcEEEEee
Confidence 997544 344 23569999998765
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=64.87 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=70.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-HHHC-CceecCCCcCCHHhh---cCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAA-GFTEENGTLGDIYET---ISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-A~~~-G~~~~~~t~~~~~E~---l~~ADVViLav 186 (281)
..||.||++.||+.++.|+.+. |+.|.+++|..++..+. +.+. |-..- ...+++|. ++.--+|+|.+
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~--ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKII--GAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCccc--CCCCHHHHHHhcCCCcEEEEEe
Confidence 5699999999999999999999 99999999987654432 2222 21110 13466665 66778999999
Q ss_pred CChhHHH-HHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQAD-NYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~-vl~ei~~~mKpgaILi~aaG 213 (281)
+...-.+ +|+++.++|.+|.+||+-+-
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGGN 106 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGGN 106 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCCc
Confidence 9865554 88899999999999997543
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.002 Score=60.13 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=54.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcCcCCEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l~~ADVV 182 (281)
+++| +++.|||.|-+|++++..|... |. +|.+.+|..++..+.+.+.+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 5788 9999999999999999999988 87 6889998765555555443211000001 1234567889999
Q ss_pred EEccCChh
Q 023490 183 LLLISDAA 190 (281)
Q Consensus 183 iLavP~~~ 190 (281)
|-++|...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999753
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.006 Score=57.62 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=45.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHHC--Cceec---CCCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~~--G~~~~---~~t~~~~~E~l~~ADVViL 184 (281)
|+|+|||.|.+|.++|..|... | .+|.+.++...+....+... ..... .-...+. +.+++||+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 7 47777777643222222211 11000 0001233 56899999999
Q ss_pred ccCC
Q 023490 185 LISD 188 (281)
Q Consensus 185 avP~ 188 (281)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9885
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0042 Score=58.94 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=60.7
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||.++ .|+.+|..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8888877632 2267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++--.. ++. ..++|+|++|++++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEec
Confidence 766432 443 23789999998765
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0025 Score=61.72 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=63.2
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHh-hhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra-~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
.+|.| +++.|+|. |.||..+++.|.. . | .++++.+|...+..+.+.+.+.. ...++++.+.++|+|
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~~------gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiV 219 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAKT------GVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIV 219 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhhC------CCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEE
Confidence 47999 99999998 8999999999974 3 4 37777777644333334443211 134788999999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+.++..... -+++. ..++++.+++|.+
T Consensus 220 v~~ts~~~~-~~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 220 VWVASMPKG-VEIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred EECCcCCcC-CcCCH--HHhCCCeEEEEec
Confidence 988865332 12331 2447888888664
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0061 Score=57.80 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=53.7
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.+|||||+|.||.. .+..+... .++++....+.+.+ +.+.+. +.. .+.+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~--~~~~~~~~~~----~~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDAT--KVKADWPTVT----VVSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHH--HHHhhCCCCc----eeCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999984 56666554 15666543333322 112233 222 2568999996 5799999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi 209 (281)
+..+.++..+.+ +.|..|+
T Consensus 74 ~~~H~~~~~~al---~aGkhVl 92 (346)
T PRK11579 74 NDTHFPLAKAAL---EAGKHVV 92 (346)
T ss_pred cHHHHHHHHHHH---HCCCeEE
Confidence 988777665543 3355443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0063 Score=61.64 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=60.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E-~l~~ADVViLavP 187 (281)
..+-|+|+|.+|+.+++.|++. |+++++.+.+. +..+.+++.|+..-.+...+.+ + -++++|.++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId~d~-~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIETSR-TRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEECCH-HHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3789999999999999999999 99988777654 4456677777643223333432 1 2679999999999
Q ss_pred ChhHHH-HHHHHHhcCCCCcEE
Q 023490 188 DAAQAD-NYEKIFSCMKPNSIL 208 (281)
Q Consensus 188 ~~~~~~-vl~ei~~~mKpgaIL 208 (281)
+..... +...... +.|+..+
T Consensus 491 ~~~~~~~iv~~~~~-~~~~~~i 511 (558)
T PRK10669 491 NGYEAGEIVASARE-KRPDIEI 511 (558)
T ss_pred ChHHHHHHHHHHHH-HCCCCeE
Confidence 876544 3333333 3444433
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0048 Score=50.47 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=57.8
Q ss_pred cEEEEEc----cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG----~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+|+||| -+..|.-+.++|++. |++|+-.+.+... -.|... +.++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688999999999998 9987655544321 135543 6688884489999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+....++++++... ..+.+++..+.
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~ 89 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGA 89 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcch
Confidence 99999999987654 34455555553
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0063 Score=62.57 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=64.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E-~l~~ADVViLavP 187 (281)
.++-|+|+|.+|+.+++.|++. |+++++.+.+ .+..+.+++.|...-.|...+.+ + -+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d-~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVLERD-ISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEEECC-HHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 9988777765 44566777778543222233332 2 2789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEeC
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLSH 212 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~aa 212 (281)
+.+....+-.....+.|+. ++.-+.
T Consensus 474 d~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 474 EPEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 9776544433344455554 443333
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.011 Score=52.88 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=56.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|.| +++.|||.|.+|..-++.|.+. |.+|++.........+...+. .+....+.+. .+.+.++|+|++
T Consensus 5 l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~--~~dl~~~~lVi~ 75 (205)
T TIGR01470 5 ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCFD--ADILEGAFLVIA 75 (205)
T ss_pred EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCC--HHHhCCcEEEEE
Confidence 57999 9999999999999999999999 999888876543333333333 3432112222 355789999999
Q ss_pred ccCChhHHH
Q 023490 185 LISDAAQAD 193 (281)
Q Consensus 185 avP~~~~~~ 193 (281)
++.+.+...
T Consensus 76 at~d~~ln~ 84 (205)
T TIGR01470 76 ATDDEELNR 84 (205)
T ss_pred CCCCHHHHH
Confidence 999875543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0039 Score=59.01 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=60.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|..+|..|... |..|.++... ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47999 999999988 8999999999988 8888776432 1256788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvGkp~---~i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPN---LIT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCccc---ccC--HHHcCCCcEEEEee
Confidence 997543 444 24689999998764
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.014 Score=56.65 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=59.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHH----hhcCcCCE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDL 181 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--G~~~~~~t~~~~~----E~l~~ADV 181 (281)
+.. ++|.|+|+|.+|..+++.|.+. |++|++.++..+ ..+...+. ++..-.+...+.+ .-++++|.
T Consensus 229 ~~~-~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~~~-~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPV-KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERDPE-RAEELAEELPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 445 8999999999999999999998 999888876643 33333332 3321112222332 23679999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
|++++++....-++..+...+.+..++.
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~ 328 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIA 328 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 9999987644333334444455555554
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.005 Score=58.20 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|..++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36899 999999965 7899999999988 8888877543 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPK---FID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcC---ccC--HHHcCCCcEEEEee
Confidence 998644 444 23589999999863
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.005 Score=58.38 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=61.0
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999965 7899999999988 8888877533 1367788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 209 AvGk~~---~i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPE---FIK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcC---ccC--HHHcCCCCEEEEec
Confidence 998643 344 34689999998864
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0048 Score=58.47 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=60.7
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|..++..|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 7899999999988 8888877432 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|+++++++
T Consensus 207 AvG~~~---~i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAK---FVK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998644 344 24689999998764
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0055 Score=60.92 Aligned_cols=87 Identities=18% Similarity=0.206 Sum_probs=67.4
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
++|+|||. |++|..+.++|++. |+ +|...+.+.. .-.|+.. +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~~Vnp~~~------~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIYPVNPKAG------EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEEEECCCCC------ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 5543333321 2246653 66888988889999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+|+....+.+++... .....++++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999998888887655 45566888899986
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0051 Score=58.23 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..+|..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999966 7899999999988 8888877433 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 206 AvG~p~---~i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 206 AVGVPH---FIG--ADAVKPGAVVIDVG 228 (282)
T ss_pred ccCCcC---ccC--HHHcCCCcEEEEee
Confidence 998644 444 23689999998865
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.005 Score=58.77 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.++..|... |..|.++..+ ..++++.+++||+|+.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 6899999999988 8888877432 1267889999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-. .++. ..++|+|++|++++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 3554 24689999998765
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0055 Score=58.02 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=60.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 37999 999999966 7899999999988 8888877543 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++.. .++|+|++|++++
T Consensus 208 AvGkp~---~i~~--~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPN---FITA--DMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcC---cCCH--HHcCCCcEEEEec
Confidence 998644 3442 4689999999864
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0068 Score=55.56 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=43.4
Q ss_pred EEEEcc-CchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccHHHHHHC--------CceecCCCcCCHHhhcCcCC
Q 023490 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 114 IGIIG~-G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~~~A~~~--------G~~~~~~t~~~~~E~l~~AD 180 (281)
|+|||. |.+|..+|..|... | .+|.+++....+....+.+. ....+ ...+.++.+++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--ITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--ECCchHHHhCCCC
Confidence 689999 99999999999887 6 57877876543222111111 11111 1345678999999
Q ss_pred EEEEcc
Q 023490 181 LVLLLI 186 (281)
Q Consensus 181 VViLav 186 (281)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999954
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0074 Score=57.66 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=51.0
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.++||||+|.+++. .+..+.... .++++. ++++. .+..+.+.+.+... .+.+.+|+++ +.|+|++++|
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~-~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp 73 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRH-AKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTH 73 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCC-hhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 58999999998753 345443320 145665 44443 33234445554221 2568999996 5799999999
Q ss_pred ChhHHHHHHHHHh
Q 023490 188 DAAQADNYEKIFS 200 (281)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (281)
+..+.++..+.+.
T Consensus 74 ~~~H~~~~~~al~ 86 (344)
T PRK10206 74 ADSHFEYAKRALE 86 (344)
T ss_pred chHHHHHHHHHHH
Confidence 9888776665443
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0058 Score=58.25 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=60.9
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++..|... |..|.++..+ ..++++.+++||+|+.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 7899999999988 8888877432 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998543 444 24689999998865
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.019 Score=48.34 Aligned_cols=66 Identities=27% Similarity=0.279 Sum_probs=49.2
Q ss_pred EEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEccCC
Q 023490 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (281)
Q Consensus 114 IGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLavP~ 188 (281)
|.|+| .|.+|+.+++.|.+. |++|+...|+.++..+ ..++..-.+...+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 67899 599999999999999 9999998888653222 3444322233334 45788899999999986
|
... |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0061 Score=57.84 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=60.5
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++..|... +..|.++..+ ..++++.+++||+|+.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999955 7899999999988 8888877533 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998643 444 34689999998864
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0062 Score=57.82 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=60.5
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 155 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~ 208 (288)
T PRK14171 155 PNLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVA 208 (288)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36999 999999966 7899999999988 8888877543 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-. +++. ..++|+|++||+++
T Consensus 209 AvGkp---~~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 209 AIGSP---LKLT--AEYFNPESIVIDVG 231 (288)
T ss_pred ccCCC---CccC--HHHcCCCCEEEEee
Confidence 99853 2454 24689999998764
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.012 Score=47.21 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=59.7
Q ss_pred chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HH
Q 023490 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY 195 (281)
Q Consensus 121 ~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl 195 (281)
+-+..+++.|++. |.+|.+++..-.. ..... .++.. ..++++.++.+|+|+++++-.+... -+
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~--~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE--EEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH--HHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh--HHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 6677889999998 9999988876432 22222 45653 4588999999999999999988776 45
Q ss_pred HHHHhcCCCCcEEEEeCCc
Q 023490 196 EKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 196 ~ei~~~mKpgaILi~aaG~ 214 (281)
+++...|+++.+|++..++
T Consensus 85 ~~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHHSCSSEEEEESSST
T ss_pred HHHHHhcCCCCEEEECccc
Confidence 6888889888999998875
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0059 Score=57.83 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=61.9
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||-++ .|+.++..|... +..|.++.... .++.+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~T-------------------~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSRT-------------------KDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCCC-------------------CCHHHHhhhCCEEEE
Confidence 47899 9999999885 599999999998 99998876431 267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++--.. ++. .+++|||+++++++-
T Consensus 206 AvG~p~---~i~--~d~vk~gavVIDVGi 229 (283)
T COG0190 206 AVGKPH---FIK--ADMVKPGAVVIDVGI 229 (283)
T ss_pred ecCCcc---ccc--cccccCCCEEEecCC
Confidence 987543 444 457899999998753
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0093 Score=55.79 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=41.2
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH---HCC------ceecCCCcCCHHhhcCcCCEEE
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG------FTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~---~~G------~~~~~~t~~~~~E~l~~ADVVi 183 (281)
|+|||.|.||..+|..+... |+ +|++.+...+.....+. ... .... ...+ .+.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~--~t~d-~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVT--GTND-YEDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE--EcCC-HHHhCCCCEEE
Confidence 68999999999999988876 65 88888776432111111 110 0110 1134 45689999999
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 976
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.033 Score=53.17 Aligned_cols=69 Identities=23% Similarity=0.205 Sum_probs=44.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH----H---CC--ceecCCCcCCHHhhcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----A---AG--FTEENGTLGDIYETIS 177 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~----~---~G--~~~~~~t~~~~~E~l~ 177 (281)
++. +||+|||.|+||..+|..+... |+ +|.+.+...+.....+. . .+ ...+ ...+. +.++
T Consensus 4 ~~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~ 73 (321)
T PTZ00082 4 IKR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIA 73 (321)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhC
Confidence 444 8999999999999999988877 75 77777765432111111 1 11 1111 12355 5789
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
+||+|+++.
T Consensus 74 ~aDiVI~ta 82 (321)
T PTZ00082 74 GSDVVIVTA 82 (321)
T ss_pred CCCEEEECC
Confidence 999999966
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0066 Score=57.46 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=60.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.+|..|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36899 999999966 7899999999988 8888877543 1267789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|+++++++
T Consensus 207 AvGkp~---~i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVN---LLR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcC---ccC--HHHcCCCCEEEEec
Confidence 998643 444 23689999999864
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0023 Score=59.50 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=70.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-----------HCCceec-C------------
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE-N------------ 166 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-----------~~G~~~~-~------------ 166 (281)
++.++|||.|.||..+||-...+ |++|.+.++... ...+|. +.+.... .
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~~-aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANED-ALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCHH-HHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 58899999999999999999998 999988876532 122221 1111100 0
Q ss_pred -CCcCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 167 -GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 167 -~t~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
.+..+..++++++|+||=++-.+... +++.++-..-|++++|. ..+.+.+..+..
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~ 142 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS 142 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh
Confidence 12346778888999998777665543 36666666778888875 567777766553
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0043 Score=59.53 Aligned_cols=90 Identities=18% Similarity=0.101 Sum_probs=54.4
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCC-c-EEEEEecCCcccHHHHHH-C--CceecCCCcC---CHHhhcCcCCEEEEc
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLG---DIYETISGSDLVLLL 185 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G-~-~Viig~r~~~~s~~~A~~-~--G~~~~~~t~~---~~~E~l~~ADVViLa 185 (281)
|+|||.|.+|+.+++.|.+. + + +|++++|+..+..+.+.+ . .+....-... ++.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788998875443333322 1 2211100112 256789999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+.....+++..+. .|...++.+
T Consensus 75 ~gp~~~~~v~~~~i~---~g~~yvD~~ 98 (386)
T PF03435_consen 75 AGPFFGEPVARACIE---AGVHYVDTS 98 (386)
T ss_dssp SSGGGHHHHHHHHHH---HT-EEEESS
T ss_pred CccchhHHHHHHHHH---hCCCeeccc
Confidence 999855555553322 355555533
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0091 Score=53.32 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=61.2
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC---Cc-------------ccHHH--HH---HC--
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS-------------RSFAE--AR---AA-- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~---~~-------------~s~~~--A~---~~-- 160 (281)
...|+. ++|+|||+|-||..+|..|... |+ ++++.|+. .+ +.... ++ +.
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 456788 9999999999999999999988 87 57666654 10 00000 00 10
Q ss_pred Cceec--CCC--cCCHHhhcCcCCEEEEccCChhHH-HH-HHHHHhcCCCCcEEEEeCCc
Q 023490 161 GFTEE--NGT--LGDIYETISGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 161 G~~~~--~~t--~~~~~E~l~~ADVViLavP~~~~~-~v-l~ei~~~mKpgaILi~aaG~ 214 (281)
....+ ... ..++++.++++|+|+-++ ++... .. +++....++...++. ..|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~-Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAF-DNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 01110 000 113456788999999995 55444 34 457777776654554 4444
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.013 Score=60.61 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=61.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH----hhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~----E~l~~ADVViLavP 187 (281)
+++-|+|+|.+|+.+++.|++. |+++++.+.+. +..+.+++.|+..-.|...+.+ .-++++|.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvID~d~-~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVLDHDP-DHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEEECCH-HHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999998 98887776553 4466677777643222233332 23679999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcE
Q 023490 188 DAAQADNYEKIFSCMKPNSI 207 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaI 207 (281)
+.+....+-.....+.|+..
T Consensus 474 d~~~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPHLQ 493 (621)
T ss_pred CHHHHHHHHHHHHHhCCCCe
Confidence 87665444333344445543
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0074 Score=57.46 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=60.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|..++..|... |..|.++..+ ..++.+.+++||+|+.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 7899999999988 8888877543 1267789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 210 AvGkp~---~i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPN---FVK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998644 344 24588999998863
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0063 Score=55.15 Aligned_cols=79 Identities=16% Similarity=0.023 Sum_probs=49.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc----------ccHHHHHHCCceec--CCCcCCHH
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE--NGTLGDIY 173 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----------~s~~~A~~~G~~~~--~~t~~~~~ 173 (281)
.+++| +++.|.|+|+.|+.+|+.|.+. |..|+...+.+. +..+..++.+-... .....+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 57899 9999999999999999999998 986554444433 22333333321110 00011112
Q ss_pred hh-cCcCCEEEEccCChhH
Q 023490 174 ET-ISGSDLVLLLISDAAQ 191 (281)
Q Consensus 174 E~-l~~ADVViLavP~~~~ 191 (281)
++ -.++|+++.|.+.+..
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 22 2379999999887643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=58.23 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=61.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc--------------cHHHHHHC----C-ceecCCCcCCH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAA----G-FTEENGTLGDI 172 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~--------------s~~~A~~~----G-~~~~~~t~~~~ 172 (281)
|+|.|||.|-.|-..+..|.+. |++|+..+....+ -.++..+. | +.. ..|.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f----Ttd~ 70 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF----TTDY 70 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE----EcCH
Confidence 7899999999999999999999 9998766643211 11111111 1 121 3578
Q ss_pred HhhcCcCCEEEEccCChh------HH----HHHHHHHhcCCCCcEEEE
Q 023490 173 YETISGSDLVLLLISDAA------QA----DNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~------~~----~vl~ei~~~mKpgaILi~ 210 (281)
+++++++|+++|++|... .+ .+.+++.++++..++|++
T Consensus 71 ~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~ 118 (414)
T COG1004 71 EEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI 118 (414)
T ss_pred HHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 899999999999987422 12 244578888987676653
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0077 Score=58.52 Aligned_cols=76 Identities=18% Similarity=0.092 Sum_probs=60.2
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..+|..|... |..|.++..+ ..++++.+++||+||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 6799999999988 8888777533 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++||+++
T Consensus 264 AvGkp~---~v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPN---LVR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998644 344 24589999999865
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0089 Score=56.63 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=60.1
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++.-|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 7899999999888 8888876432 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-. .++. ..++|+|+++++++
T Consensus 207 AvGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCc---CccC--HHHcCCCCEEEEee
Confidence 99853 2454 24589999998764
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0087 Score=56.73 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=60.0
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.+|..|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 46999 999999955 8899999999988 8888877432 1267789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 997543 454 23469999999865
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.008 Score=58.77 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=60.3
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.++..|... +..|.++..+ ..++.+.+++|||||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36899 999999965 7899999999988 8888877432 1367888999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|||++||+++
T Consensus 281 AvGkp~---~i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPN---MVR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcC---cCC--HHHcCCCCEEEecc
Confidence 998543 344 24589999998764
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0084 Score=57.08 Aligned_cols=80 Identities=20% Similarity=0.202 Sum_probs=57.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.++..|.+.+.. .+..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~--~~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKE--SNCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhcccc--CCCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47999 999999966 7899999998761100 06677666532 1257789999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-. .++.. .++|+|++|++++
T Consensus 213 Avg~~---~li~~--~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFITA--DMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccCH--HHcCCCCEEEEee
Confidence 99654 34551 2359999998764
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0077 Score=65.88 Aligned_cols=82 Identities=16% Similarity=0.108 Sum_probs=54.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-------------EEEEEecCCcccHHHHHHC-Cc---eecCCCcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-------------VVKVGLRKGSRSFAEARAA-GF---TEENGTLGD 171 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-------------~Viig~r~~~~s~~~A~~~-G~---~~~~~t~~~ 171 (281)
+.+++|+|||.|.||+..++.|.+. .+. .|.++++...+..+.+... ++ .. | ..+
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-----~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~l-D--v~D 638 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-----KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQL-D--VSD 638 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-----cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEe-e--cCC
Confidence 3348999999999999999999764 022 3677776543333333333 42 21 1 235
Q ss_pred HHhh---cCcCCEEEEccCChhHHHHHHHH
Q 023490 172 IYET---ISGSDLVLLLISDAAQADNYEKI 198 (281)
Q Consensus 172 ~~E~---l~~ADVViLavP~~~~~~vl~ei 198 (281)
.+++ ++++|+|+.++|..-+..+....
T Consensus 639 ~e~L~~~v~~~DaVIsalP~~~H~~VAkaA 668 (1042)
T PLN02819 639 SESLLKYVSQVDVVISLLPASCHAVVAKAC 668 (1042)
T ss_pred HHHHHHhhcCCCEEEECCCchhhHHHHHHH
Confidence 4444 47899999999997776666543
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0094 Score=56.51 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=59.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHh--hhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra--~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
.+|+| |++.|||-+ ..|..++..|.. . +..|.++..+ ..++.+.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 47899 999999955 789999999987 5 7778777432 12678899999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+.++.-.. ++. ..++|+|+++++++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99998653 454 24689999998865
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0074 Score=47.45 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=49.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~~ 189 (281)
.++.|+|.|++|++++...... .|++... +++..+.+ .. ..-.|+.. +.+++|+.+. .|+-+|++|..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~g~~i~~-~~dv~~~~-~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---RGFGIVA-VFDVDPEK-IG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---HCECEEE-EEEECTTT-TT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---cCCCCEE-EEEcCCCc-cC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5799999999999998666554 2333332 33333221 10 11135553 4467776665 99999999998
Q ss_pred hHHHHHHHHHh
Q 023490 190 AQADNYEKIFS 200 (281)
Q Consensus 190 ~~~~vl~ei~~ 200 (281)
...+...++++
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87777776554
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.018 Score=55.68 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=81.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC--
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-- 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~-- 188 (281)
.+|||||. .+|+..++.+++. ..+.+++ ++++..++..+.+++.|+.. +.+.+|++++.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5899999988875 0035554 45555555556778888763 67999999988999888764
Q ss_pred --hhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhc-ccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEe
Q 023490 189 --AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (281)
Q Consensus 189 --~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~-~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av 265 (281)
..+.++..+. |+.|..|+.=+=+..+..++. ...-..++.+.-..=+..-+.+|++-.+|+.++=.|-+.++..
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v~~f~p~~~~vr~~i~~~~~i~~~~~~~~i~~ 151 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLVNTFYPHLPAVRRFIEYARQLHHRRGPRFVEA 151 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEEEecCHHHHHHHHHHHcchhHhhcCCCCccee
Confidence 3444444443 455665553222222221110 0011123333222222234577888888866654555543333
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0076 Score=54.95 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=31.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r 148 (281)
.++.| ++|.|.|+|++|+.+|+.|.+. |++|+ +.+.
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDS 63 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 67899 9999999999999999999998 99887 4443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0052 Score=54.87 Aligned_cols=81 Identities=11% Similarity=0.214 Sum_probs=49.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~~ 189 (281)
.+|+|||+|.+|..+++.+... ..|++++...+.+..... ..-.|+.. ....++++++++ .|+|++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~----~~g~~ivgv~D~d~~~~~-~~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE----KRGFKIVAAFDVDPEKIG-TKIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc----cCCcEEEEEEECChhhcC-CEeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 7899999999999999864321 127776644433221110 00123321 113467777755 99999999998
Q ss_pred hHHHHHHHHH
Q 023490 190 AQADNYEKIF 199 (281)
Q Consensus 190 ~~~~vl~ei~ 199 (281)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8766555443
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.013 Score=57.26 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=44.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|.|||+|.+|.++|+.|++. |++|...++.... ... .+...+ ......+...+++|+|+.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~~-~~~---~~~~~~-~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLEA-LQS---CPYIHE-RYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCccc-cch---hHHHhh-hhcCCcHHHhcCCCEEEECCCCCC
Confidence 8999999999999999999999 9988777765332 111 111100 001133344578999999876543
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.024 Score=49.96 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.1
Q ss_pred EEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccCC
Q 023490 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (281)
Q Consensus 114 IGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViLavP~ 188 (281)
|.|+| .|.+|+.+++.|.+. +++|.+..|+... ..+..+..|+..-...+. ++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 68999 599999999999998 9999988887632 223445567543222232 356789999999999993
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.04 Score=50.08 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhcCcCCEEEEccCChhH
Q 023490 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 122 mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~--~--------t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
||..+|..|... |++|.+..|. +..+.-++.|+...+ + ...++++ +...|+|++++|-.+.
T Consensus 2 iG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~ 72 (293)
T TIGR00745 2 VGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQT 72 (293)
T ss_pred chHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhH
Confidence 788999999888 9999888875 223344455653321 1 0112344 6789999999999888
Q ss_pred HHHHHHHHhcCCCCcEEE-EeCCcch-hhhhh
Q 023490 192 ADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS 221 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaILi-~aaG~~l-~~l~~ 221 (281)
.+.++.+.+++.++++|+ +--|+.. +.+..
T Consensus 73 ~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~ 104 (293)
T TIGR00745 73 EEAAALLLPLIGKNTKVLFLQNGLGHEERLRE 104 (293)
T ss_pred HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHH
Confidence 888999999999988665 5677763 34443
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.019 Score=54.18 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=73.2
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
| ++++|||--.=-..+++.|.+. |++|.++.-+++. -...|+.. ..+.+++++++|+|++.+|..
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~----~~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD----HGFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc----cccCCcee----eccHHHHhccCCEEEECCccc
Confidence 6 8999999888888999999999 9998875433211 12346653 346788999999999999973
Q ss_pred hHH----------H-HH-HHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccC
Q 023490 190 AQA----------D-NY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 190 ~~~----------~-vl-~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPn 238 (281)
... + .+ .+.+..|+++++++. |+...++.+ .....++.++..+|.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~~--G~~~~~~~~--~~~~~gi~~~~~~~~ 123 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIFS--GIANPYLKE--LAKETNRKLVELFER 123 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEEE--ecCCHHHHH--HHHHCCCeEEEEecc
Confidence 211 1 23 368899999986553 443322222 112356777766654
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.012 Score=56.03 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC--------CceecCCCcCCHHhhcCc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISG 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~--------G~~~~~~t~~~~~E~l~~ 178 (281)
.| +||+|||.|.+|.++|..|... |. ++.+.+.........+.+. .... ..+..+.+++
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i----~~~~~~~~~~ 73 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI----YAGDYSDCKD 73 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE----EeCCHHHhCC
Confidence 56 8999999999999999999888 76 6777776543222222211 1111 1233466899
Q ss_pred CCEEEEccC
Q 023490 179 SDLVLLLIS 187 (281)
Q Consensus 179 ADVViLavP 187 (281)
||+|+++.-
T Consensus 74 adivIitag 82 (315)
T PRK00066 74 ADLVVITAG 82 (315)
T ss_pred CCEEEEecC
Confidence 999999543
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.029 Score=49.88 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=55.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A~~~---- 160 (281)
...|.. ++|.|||+|-+|..+|++|... |. ++.+.|+.. .+....+++.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 356888 9999999999999999999998 76 666666541 0111111111
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHHh
Q 023490 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (281)
Q Consensus 161 -G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~~ 200 (281)
.+..+ .... .+.++.++++|+||.++........+++...
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~ 133 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACV 133 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 11100 0111 1245678999999999866555556765443
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.031 Score=53.02 Aligned_cols=91 Identities=14% Similarity=0.244 Sum_probs=67.0
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP 187 (281)
.+|.|.| .|++|..+.++|.++ |+++++...+.. . .+-.|+.. +.+++|+-+. .|+.++++|
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~----~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp 74 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG----TTVLGLPV----FNTVAEAVEATGANASVIYVP 74 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC----CeEeCeec----cCCHHHHhhccCCCEEEEEcC
Confidence 6788999 588999999999998 887333333220 1 11246664 6788888876 899999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
.....+.+++... ..-...+++++||.+.
T Consensus 75 ~~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 75 PPFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 9988888887654 3445678899999864
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.017 Score=55.09 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=58.7
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..++..|... ....+..|.++..+ ..++.+.+++||+|+.
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~--~~~~~aTVtvchs~-------------------T~nl~~~~~~ADIvIs 210 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK--AYPGDCTVTVCHSR-------------------SKNLKKECLEADIIIA 210 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC--CCCCCCEEEEecCC-------------------CCCHHHHHhhCCEEEE
Confidence 46999 999999966 7899999999875 00002567666432 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 211 AvGkp~---~i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 211 ALGQPE---FVK--ADMVKEGAVVIDVG 233 (293)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998644 344 25689999998865
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=57.31 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=46.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.++.| +++.|||.|.||.-+++.|++. |. +|.+.+|.... ...+-. .....+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 46899 9999999999999999999998 85 68889887421 111100 0011144578999999
Q ss_pred cc
Q 023490 185 LI 186 (281)
Q Consensus 185 av 186 (281)
++
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.024 Score=55.94 Aligned_cols=73 Identities=23% Similarity=0.175 Sum_probs=52.4
Q ss_pred cccCCCcEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
....+ ++|.|||+|..|.+ +|+.|++. |++|.+.+.+.....+..++.|+... .....+.+.++|+|++
T Consensus 3 ~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv~ 72 (461)
T PRK00421 3 ELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVVY 72 (461)
T ss_pred CcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEEE
Confidence 45677 99999999999999 79999999 99998887654333333455677642 1223456778999988
Q ss_pred --ccCC
Q 023490 185 --LISD 188 (281)
Q Consensus 185 --avP~ 188 (281)
.+|+
T Consensus 73 spgi~~ 78 (461)
T PRK00421 73 SSAIPD 78 (461)
T ss_pred CCCCCC
Confidence 3454
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.012 Score=55.76 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=63.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCH--HhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI--YETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~--~E~l~~ADVV 182 (281)
.+.+| +++.|+|.|-.+++++..|.+. |. +|.|.+|..++..+.+...+-.......... .+.+.++|+|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dli 194 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLL 194 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEE
Confidence 56679 9999999999999999999999 95 7999999876655665544411000001111 1223279999
Q ss_pred EEccCChhHHH----HHHHHHhcCCCCcEEEE
Q 023490 183 LLLISDAAQAD----NYEKIFSCMKPNSILGL 210 (281)
Q Consensus 183 iLavP~~~~~~----vl~ei~~~mKpgaILi~ 210 (281)
|-+||..-... .+. ...++++.++.+
T Consensus 195 INaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D 224 (283)
T COG0169 195 INATPVGMAGPEGDSPVP--AELLPKGAIVYD 224 (283)
T ss_pred EECCCCCCCCCCCCCCCc--HHhcCcCCEEEE
Confidence 99999854322 222 445666666654
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.011 Score=55.99 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=58.3
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHh----hhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra----~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~AD 180 (281)
.+++| |++.|||-+ ..|+.++..|.. . +..|.++..+ ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 47999 999999966 789999999987 5 6777766532 126778999999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+.++.-.. ++.+ .++|+|+++++++
T Consensus 207 IVI~AvG~p~---li~~--~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVTA--DMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCCH--HHcCCCCEEEEee
Confidence 9999996533 4442 3459999998764
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.029 Score=53.14 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=68.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~ 188 (281)
.+|.|.| .|.+|..+-+++++. |.+++++..++ +. ..+-.|+.. +.+++|+-+. .|+.++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6789999 899999999999998 88866555443 10 112356664 6788887776 6999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
....+.+++... ..-..++++++||...
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e~ 101 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPVH 101 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 988888887654 3334678899999753
|
ATP citrate lyases appear to form an outgroup. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.015 Score=54.46 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=50.4
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCC---cccHHHHHHC---C--ceecCCCcC---CHHh
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~---~~s~~~A~~~---G--~~~~~~t~~---~~~E 174 (281)
+++| +++.|+|.|-+|++++..|... |.+ |.+.+|.. ++..+.+++. + ......... +.++
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 5788 9999999999999999999988 985 88888874 2222322221 1 110000011 2334
Q ss_pred hcCcCCEEEEccCCh
Q 023490 175 TISGSDLVLLLISDA 189 (281)
Q Consensus 175 ~l~~ADVViLavP~~ 189 (281)
.++++|+||.+||..
T Consensus 196 ~~~~~DilINaTp~G 210 (289)
T PRK12548 196 EIASSDILVNATLVG 210 (289)
T ss_pred hhccCCEEEEeCCCC
Confidence 567889999999974
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.021 Score=56.88 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=52.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..+.+ ++|.|+|+|..|.++|+.|++. |++|.+.++......+...+.|+.... .....+-+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 46788 9999999999999999999999 999888876533222223456765421 11234556789999874
Q ss_pred --cCC
Q 023490 186 --ISD 188 (281)
Q Consensus 186 --vP~ 188 (281)
+|+
T Consensus 82 pgi~~ 86 (473)
T PRK00141 82 PGWRP 86 (473)
T ss_pred CCCCC
Confidence 454
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.058 Score=51.97 Aligned_cols=92 Identities=11% Similarity=0.174 Sum_probs=69.7
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEcc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLav 186 (281)
.+|-|-| .|..|.-.++.+++. |-+|+.+..++. .... ..|+.. +.+.+|+.+. .|+.++.+
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 6899999 699999999999999 988887776543 2111 126664 6789999887 99999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
|+....+.+.|.... .-..+++++.||...
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~ 126 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQH 126 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchh
Confidence 998888877654432 223477889998853
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.036 Score=53.82 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=62.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcC-CHHhhcCcCCEEEEcc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETISGSDLVLLLI 186 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~-~~~E~l~~ADVViLav 186 (281)
+| ++|+|+|.|-+|.--.|.+++. |.+|+..++... ..+.|++.|...- +.... ..+++-+.+|+|+..+
T Consensus 166 pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~~~-K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRSEE-KLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCChH-HHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 47 9999999999999888998888 999988877654 4677888885431 00001 1223333399999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+ .. .++..++.++++-.++++
T Consensus 238 ~-~~---~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 238 G-PA---TLEPSLKALRRGGTLVLV 258 (339)
T ss_pred C-hh---hHHHHHHHHhcCCEEEEE
Confidence 9 33 455556667776655433
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.026 Score=55.75 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=50.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhcCcCCE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~A~~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
.-+.| ++|+|+|+|..|.++|+.|++. |++|.+.++..... .+..++.|+....+ ....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCCE
Confidence 44678 9999999999999999999999 99998888654211 12345567653211 122455688999
Q ss_pred EEEc
Q 023490 182 VLLL 185 (281)
Q Consensus 182 ViLa 185 (281)
|+..
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 9885
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.014 Score=57.74 Aligned_cols=75 Identities=20% Similarity=0.122 Sum_probs=45.1
Q ss_pred cEEEEEccCchHHHHHH--HHHhhhhhccCCcEEEEEecCCcccHHHH-------HHCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------RAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~--~Lra~~~~~~~G~~Viig~r~~~~s~~~A-------~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
++|+|||.|++|.+.+. .+.... +-.|.+|.++++..+...... ...+....-....|..+++++||+|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEE
Confidence 47999999999998665 332110 111678888877643211111 1111110001145788999999999
Q ss_pred EEccCC
Q 023490 183 LLLISD 188 (281)
Q Consensus 183 iLavP~ 188 (281)
+.+++.
T Consensus 79 i~ai~~ 84 (423)
T cd05297 79 INTIQV 84 (423)
T ss_pred EEeeEe
Confidence 999994
|
linked to 3D####ucture |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.039 Score=53.81 Aligned_cols=73 Identities=23% Similarity=0.196 Sum_probs=51.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH----HHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~----~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
+++| |++.|||.|.+|.++|+.|.+. |++|.+.++...... +...+.|....- ....++...+.|+|
T Consensus 2 ~~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~v 72 (450)
T PRK14106 2 ELKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLV 72 (450)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEE
Confidence 4788 9999999999999999999999 999998887642222 222334543210 11233556789999
Q ss_pred EEccCC
Q 023490 183 LLLISD 188 (281)
Q Consensus 183 iLavP~ 188 (281)
+.++-.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 996643
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.029 Score=53.31 Aligned_cols=80 Identities=11% Similarity=0.165 Sum_probs=58.3
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.++..|.... +..+..|.++..+ ..++.+.+++||+|+.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKH--PDTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCc--CCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 78999999997650 0013466655332 2367888999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998643 444 24589999999865
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.1 Score=49.01 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=64.9
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC--CcccHHHHHHCCceecCCCcCCHHh--hcCcCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~--~~~s~~~A~~~G~~~~~~t~~~~~E--~l~~ADVVi 183 (281)
.+| .++.|+|.|.+|...++.++.. |.+|++.++. ..+..+.+++.|...-+....+..+ .....|+|+
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 368 9999999999999999999998 9888777763 2344567788887531111111111 234589999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
-++.... .+++.+..++++..+++.
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEE
Confidence 9987432 566677788888766543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.062 Score=54.19 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=69.9
Q ss_pred ccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-----cee-------
Q 023490 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------- 164 (281)
Q Consensus 107 ~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-----~~~------- 164 (281)
.+.| ++|+|+|+ .+-...+++.|... |.+|.+++..-.. .+.....+ +..
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 5899 99999998 55778888888888 9999988876321 11111111 000
Q ss_pred ------cCCCcCCHHhhcCcCCEEEEccCChhHHHH-HHHHHhcCCCCcEEEEeCCcc
Q 023490 165 ------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 165 ------~~~t~~~~~E~l~~ADVViLavP~~~~~~v-l~ei~~~mKpgaILi~aaG~~ 215 (281)
+...+.+.+++++++|+|++++.-.+..++ +.++.+.|++..+|++..++.
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l 450 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVL 450 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCC
Confidence 001133567899999999999998877653 456777787666888988765
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.043 Score=52.65 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=45.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----C-CceecCCCc-CCHHhhcCc
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~-G~~~~~~t~-~~~~E~l~~ 178 (281)
..++. +||+|||. |++|..+|..|... +...++.+.+.... ...+.+ . .....+.+. .+..+.+++
T Consensus 4 ~~~~~-~KI~IiGaaG~VGs~~a~~l~~~----~~~~elvL~Di~~~--~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~g 76 (321)
T PTZ00325 4 SALKM-FKVAVLGAAGGIGQPLSLLLKQN----PHVSELSLYDIVGA--PGVAADLSHIDTPAKVTGYADGELWEKALRG 76 (321)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEecCCC--cccccchhhcCcCceEEEecCCCchHHHhCC
Confidence 45666 99999999 99999999999855 11346777776321 111111 0 111111010 122688999
Q ss_pred CCEEEEccCC
Q 023490 179 SDLVLLLISD 188 (281)
Q Consensus 179 ADVViLavP~ 188 (281)
+|+|+++.-.
T Consensus 77 aDvVVitaG~ 86 (321)
T PTZ00325 77 ADLVLICAGV 86 (321)
T ss_pred CCEEEECCCC
Confidence 9999986543
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.064 Score=51.67 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=57.8
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc-------------------ccHHH-----HHH
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS-------------------RSFAE-----ARA 159 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~-------------------~s~~~-----A~~ 159 (281)
...|++ ++|.|||+|.+|..+|+.|... |. ++.+.|+..- ..... ..+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 467889 9999999999999999999998 76 5666665420 00111 111
Q ss_pred --CCceec----CCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhc
Q 023490 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (281)
Q Consensus 160 --~G~~~~----~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~ 201 (281)
.++..+ +-+..+++++++++|+|+.++-......+++++...
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~ 139 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK 139 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 122111 111134678899999999999655544467765544
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.036 Score=53.09 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=42.4
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCcc--cHHHHHH--C-------CceecCCCcCCH
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--A-------GFTEENGTLGDI 172 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~~--s~~~A~~--~-------G~~~~~~t~~~~ 172 (281)
+||+|||. |.+|.++|..|... |+ ++.+.+..... ....+.+ . .+.. ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 68999999 99999999998865 44 56666653221 1111111 1 1111 1345
Q ss_pred HhhcCcCCEEEEccC
Q 023490 173 YETISGSDLVLLLIS 187 (281)
Q Consensus 173 ~E~l~~ADVViLavP 187 (281)
.+.+++||+|+++.-
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 688999999999643
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.025 Score=53.92 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=42.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC--C--c----eecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--F----TEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~--G--~----~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|.+|.++|..|... |. ++.+.+.........+.+. . + ... ...+.+ .+++||+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~--~~~dy~-~~~~adi 74 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE--ADKDYS-VTANSKV 74 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE--ECCCHH-HhCCCCE
Confidence 6999999999999999998876 54 6777776543222222211 1 1 110 013555 4899999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|+++.
T Consensus 75 vvita 79 (312)
T cd05293 75 VIVTA 79 (312)
T ss_pred EEECC
Confidence 99943
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.031 Score=55.02 Aligned_cols=67 Identities=28% Similarity=0.292 Sum_probs=47.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| ++|.|||+|..|.+.|+.|++. |++|.+.++..... ....+.|+... ..+ .+-+.++|+|+.
T Consensus 5 ~~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~-~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 5 TGFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPASR-AKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred cccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhhH-HHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 45788 9999999999999999999999 99988877553322 22345676531 012 234578999886
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.051 Score=54.41 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=51.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..+.| +++.|+|+|..|.+.++.|++. |.+|++.++... ..+.+++.|+.... .....+.++++|+|+..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~~~-~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDDPD-ALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34578 9999999999999999999998 999988775533 23345566765321 11234567889998884
Q ss_pred c
Q 023490 186 I 186 (281)
Q Consensus 186 v 186 (281)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.057 Score=51.85 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=42.2
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCcc------cHHHHHHC-----CceecCCCcCC
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~~------s~~~A~~~-----G~~~~~~t~~~ 171 (281)
..||+|||. |.+|.++|..|... ++ ++.+.+..... ..+..... .... ..+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~ 73 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----TDD 73 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----ecC
Confidence 479999998 99999999988764 32 56666653211 11111111 1111 235
Q ss_pred HHhhcCcCCEEEEccC
Q 023490 172 IYETISGSDLVLLLIS 187 (281)
Q Consensus 172 ~~E~l~~ADVViLavP 187 (281)
..+.+++||+|+++.-
T Consensus 74 ~y~~~~daDiVVitaG 89 (326)
T PRK05442 74 PNVAFKDADVALLVGA 89 (326)
T ss_pred hHHHhCCCCEEEEeCC
Confidence 5688999999998554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=43.29 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=68.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee-cCCCcCCHHhhcCcCCEEEEcc
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~-~~~t~~~~~E~l~~ADVViLav 186 (281)
.+| +++.+||+| -|.++|+.|.+. |++|+..+.. +...+.+++.+... .++.+....+.-+++|+|--.=
T Consensus 15 ~~~-~kileIG~G-fG~~vA~~L~~~------G~~ViaIDi~-~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 15 GKN-KKIVELGIG-FYFKVAKKLKES------GFDVIVIDIN-EKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred ccC-CEEEEEEec-CCHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 467 899999999 899999999988 9998766554 44566676666432 1334445668899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi 209 (281)
|+.+...-+-++...++-..+|.
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 99887776667777775554544
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.034 Score=54.60 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=50.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhcCcCCEEEE---cc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL---LI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~-~t~~~~~E~l~~ADVViL---av 186 (281)
+++|||||-|-+|+=++...+.. |+++++.+..... ............+ .....+.|+++.||+|.. ++
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~~~~-PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V 73 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPDADA-PAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENV 73 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCCCCC-chhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccC
Confidence 48999999999999999999998 9999887755322 2111112222100 001246789999999987 56
Q ss_pred CChhHHHH
Q 023490 187 SDAAQADN 194 (281)
Q Consensus 187 P~~~~~~v 194 (281)
|......+
T Consensus 74 ~~~aL~~l 81 (375)
T COG0026 74 PAEALEKL 81 (375)
T ss_pred CHHHHHHH
Confidence 65444333
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.051 Score=51.21 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=51.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc---ccHHHHHHCCceecC-CCcCC------HHh
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~---~s~~~A~~~G~~~~~-~t~~~------~~E 174 (281)
.+++| +++.|||.|-.+++++..|... |. +|.+++|..+ +..+.+.+.+..... -...+ +.+
T Consensus 120 ~~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~ 192 (288)
T PRK12749 120 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 192 (288)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh
Confidence 35788 9999999999999999999887 86 7889998742 333333332210000 00112 234
Q ss_pred hcCcCCEEEEccCCh
Q 023490 175 TISGSDLVLLLISDA 189 (281)
Q Consensus 175 ~l~~ADVViLavP~~ 189 (281)
.+.++|+||.++|..
T Consensus 193 ~~~~aDivINaTp~G 207 (288)
T PRK12749 193 ALASADILTNGTKVG 207 (288)
T ss_pred hcccCCEEEECCCCC
Confidence 567899999999974
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.057 Score=53.36 Aligned_cols=71 Identities=27% Similarity=0.197 Sum_probs=50.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhcCcCCE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~A~~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
..+.| +++.|||.|.+|.++|+.|++. |++|.+.++.+... .+..++.|+... ..+..+...++|+
T Consensus 12 ~~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~ 81 (480)
T PRK01438 12 SDWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDL 81 (480)
T ss_pred cCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCE
Confidence 35788 9999999999999999999998 99998887654211 123445676542 1111124567999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|++..
T Consensus 82 Vv~s~ 86 (480)
T PRK01438 82 VVTSP 86 (480)
T ss_pred EEECC
Confidence 99865
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.045 Score=52.25 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=57.6
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|..+|..|... .+..+..|.++..+ ..++++.+++||+|+.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 47999 999999955 7899999999865 00012567665332 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|+|++|++++
T Consensus 215 AvGkp~---~i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPN---LVK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEecC
Confidence 986433 444 24589999998864
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.081 Score=49.81 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=43.0
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCC--cee-cC--CCcCCHHhhcCcCCEEEEcc
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG--FTE-EN--GTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G--~~~-~~--~t~~~~~E~l~~ADVViLav 186 (281)
|+|||.|.+|.++|..|... |. ++.+.+...+.....+.+.. ... .. -...+..+.+++||+|+++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999887 74 67777765432222222110 000 00 00112257899999999977
Q ss_pred CC
Q 023490 187 SD 188 (281)
Q Consensus 187 P~ 188 (281)
..
T Consensus 75 g~ 76 (300)
T cd00300 75 GA 76 (300)
T ss_pred CC
Confidence 63
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.056 Score=48.72 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=53.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC------------------c-ccHHHH---HHCC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG------------------S-RSFAEA---RAAG 161 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~------------------~-~s~~~A---~~~G 161 (281)
...|.. ++|.|||+|-+|..+|++|... |. ++.+.|+.. . +....+ ++..
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA------GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN 88 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC
Confidence 356788 9999999999999999999988 76 455553321 0 000000 1110
Q ss_pred --c--eecCCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHHh
Q 023490 162 --F--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (281)
Q Consensus 162 --~--~~~~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~~ 200 (281)
+ ....... .+.++.++++|+|+.++........+++...
T Consensus 89 p~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~ 133 (228)
T cd00757 89 PDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACV 133 (228)
T ss_pred CCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHH
Confidence 1 1100111 1345678899999999887665556665443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.13 Score=49.44 Aligned_cols=69 Identities=17% Similarity=0.076 Sum_probs=42.8
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCcc--cHHHHHHC--Cc-eecCC--CcCCHHhhc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARAA--GF-TEENG--TLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~~--s~~~A~~~--G~-~~~~~--t~~~~~E~l 176 (281)
.||+|||. |.+|.++|..|... ++ ++.+.+..... ....+.+. .. ..... ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999998876 53 57677664311 12222211 11 00000 013556889
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
++||+|+++.
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999954
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.1 Score=51.00 Aligned_cols=89 Identities=20% Similarity=0.280 Sum_probs=64.2
Q ss_pred ccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| ++|+|.|+ -+-...+++.|.+. |.+|.++++.-.. +.....+. ..+++|++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~--~~~~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE--EEVKGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh--hhhhhccc------CCCHHHHH
Confidence 5799 99999997 45777888999888 9999988876332 11112211 34788999
Q ss_pred CcCCEEEEccCChhHHH-HHHHHHhcCCCCcEEEEe
Q 023490 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~-vl~ei~~~mKpgaILi~a 211 (281)
+++|+|++++...+..+ -++++...|++ .+|++.
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 99999999999887665 34566666764 466664
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.054 Score=51.70 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=57.3
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.+|..|...+. ..+..|.++..+ ..++++.+++||+|+.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~aTVtvchs~-------------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKAD--GGNATVTVCHSR-------------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCcc--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 789999999875300 003567765332 1267788999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++--.. ++.. .++|+|++||+++
T Consensus 211 AvGkp~---~i~~--~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LIDG--SMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccCH--HHcCCCCEEEEcc
Confidence 876433 4442 4689999999865
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.095 Score=46.60 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=55.8
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcc-----------------cHHH-----HHHCC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR-----------------SFAE-----ARAAG 161 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~-----------------s~~~-----A~~~G 161 (281)
...|.. ++|.|||+|.+|..++++|... |. ++.+.|...-. ...+ .++..
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN 88 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN 88 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 77 46666543110 0000 01111
Q ss_pred ----ceecCCCc-CCHHhhcCcCCEEEEccCChhHHHHHHHHHhcC
Q 023490 162 ----FTEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIFSCM 202 (281)
Q Consensus 162 ----~~~~~~t~-~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~m 202 (281)
+....... ...++.+++.|+|+.++.+......+++.....
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~ 134 (197)
T cd01492 89 PRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKL 134 (197)
T ss_pred CCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHc
Confidence 11000011 134567899999999988755544566554433
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.074 Score=50.90 Aligned_cols=74 Identities=11% Similarity=0.005 Sum_probs=42.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhcc--CCcEEEEEecCCcccHHHHHHCCcee-----c-C-CCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAK--SDIVVKVGLRKGSRSFAEARAAGFTE-----E-N-GTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~--~G~~Viig~r~~~~s~~~A~~~G~~~-----~-~-~t~~~~~E~l~~ADV 181 (281)
.+|+|||. |.+|.+++..|...- =++ .+.+|.+.++.............+.. . + ....+..+.+++||+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~-~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi 81 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGD-VFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV 81 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCc-ccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence 47999998 999999999998740 000 02367777764321101111111110 0 0 002456688999999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|+++.
T Consensus 82 VI~tA 86 (325)
T cd01336 82 AILVG 86 (325)
T ss_pred EEEeC
Confidence 99854
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.08 Score=50.86 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=52.9
Q ss_pred cEEEEEccCchHHHHHHHHHhh---hh-hccCCcEEE-EEecCCc------ccHHH----HHHCCceec-C--CCcCCHH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS------RSFAE----ARAAGFTEE-N--GTLGDIY 173 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~---~~-~~~~G~~Vi-ig~r~~~------~s~~~----A~~~G~~~~-~--~t~~~~~ 173 (281)
.+|+|||+|+||+.+++.|.+. +. ..+.+++|+ +.+++.. ...+. +.+.+.... . ....+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5799999999999999998754 00 012245543 3443210 11111 222231110 0 0023778
Q ss_pred hhc--CcCCEEEEccCChhHH-HH-HHHHHhcCCCCcEEEE
Q 023490 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (281)
Q Consensus 174 E~l--~~ADVViLavP~~~~~-~v-l~ei~~~mKpgaILi~ 210 (281)
+++ .+.|+|+.++|+..+. +. .+-+...|+.|..|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 887 4689999999975442 11 2222334555665554
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.03 Score=58.42 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=49.0
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCC-ceEEEeccCCCChhhH
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN-IGVIAVCPKGMGPSVR 245 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~-i~VIrvmPntpg~~vr 245 (281)
||||+|+....++++++.++++++++|+|+++++-..++.....++.. .+||..|| +.|++..
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e~~ 64 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRESS 64 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCcch
Confidence 689999999999999999999999999999999954333211134432 46999999 7776653
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.047 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
++|.|||+|.+|..+|++|... |+ ++.+.|+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCCc
Confidence 7899999999999999999998 87 67777653
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.09 Score=51.24 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=62.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcC--CEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~A--DVViLavP~ 188 (281)
-++||+|+|.|++-.++.|.-. .+ .++.|+ ++++..++..+.|++.++. +-..+.+.||++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999999865 21 255543 5566555666778888883 123477999999988 999999999
Q ss_pred hhHHHHHHHHHhc
Q 023490 189 AAQADNYEKIFSC 201 (281)
Q Consensus 189 ~~~~~vl~ei~~~ 201 (281)
..+.++.-..+.+
T Consensus 83 ~qH~evv~l~l~~ 95 (351)
T KOG2741|consen 83 PQHYEVVMLALNK 95 (351)
T ss_pred ccHHHHHHHHHHc
Confidence 8887755444433
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.061 Score=52.75 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=53.1
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecC-CCcCCHH-hhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN-GTLGDIY-ETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~-~t~~~~~-E~l~~ADVViLavP 187 (281)
++|+||| .|..|+.+.+.|... .+++|....+..+.-....... .+...+ ....+.+ +.++++|+||+++|
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp 113 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP 113 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC
Confidence 7999999 599999999988765 2456655544321110000001 000000 0011222 22589999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....++... |+.|..||+.++
T Consensus 114 ~~~s~~i~~~----~~~g~~VIDlSs 135 (381)
T PLN02968 114 HGTTQEIIKA----LPKDLKIVDLSA 135 (381)
T ss_pred HHHHHHHHHH----HhCCCEEEEcCc
Confidence 8655555554 346788887655
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.076 Score=50.57 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=53.7
Q ss_pred cccCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~ 178 (281)
..++| .+|++||-| ++..+++..+..+ |++|.+...++- .-.+.+++.|...+ ...++++++++
T Consensus 146 g~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~ 216 (301)
T TIGR00670 146 GRLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDE 216 (301)
T ss_pred CCCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCC
Confidence 35889 999999985 9999999999988 999988876542 11234555564321 24689999999
Q ss_pred CCEEEEc
Q 023490 179 SDLVLLL 185 (281)
Q Consensus 179 ADVViLa 185 (281)
+|+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9999884
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.1 Score=50.85 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=48.2
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhcCc-CCEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~---s~~~A~~~G~~~~~~t~~~~~E~l~~-ADVV 182 (281)
++.| +++.|+|.|.+|.+.|+.|.+. |++|.+.++.... ..+...+.|+....+ ....+.+.+ .|+|
T Consensus 2 ~~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLM 72 (447)
T ss_pred CcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEE
Confidence 4678 9999999999999999999999 9999888754321 112234556543110 123344554 8988
Q ss_pred EEcc
Q 023490 183 LLLI 186 (281)
Q Consensus 183 iLav 186 (281)
+...
T Consensus 73 V~s~ 76 (447)
T PRK02472 73 VKNP 76 (447)
T ss_pred EECC
Confidence 8844
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.13 Score=49.37 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=54.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
-+|+||| .|-.|..+.+.|... ..+++...... +. +. ..+.+++++++|++|+++|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~~l~s~--~~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELLSIAPD--RR--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEEEEecc--cc--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 4799999 899999999999875 12344332211 11 22 1255677789999999999987
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCC
Q 023490 191 QADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG 213 (281)
..++..++. +.|+.|||.++
T Consensus 62 s~~~~~~~~---~~g~~VIDlSa 81 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDAST 81 (310)
T ss_pred HHHHHHHHH---hCCCEEEECCh
Confidence 666666543 36888887665
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.073 Score=53.13 Aligned_cols=73 Identities=25% Similarity=0.247 Sum_probs=49.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHHC--CceecCCCcCCHHhhcCcCCEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~~--G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
++.+ ++|.|||+|..|.++|+.|++. |++|.+.+..... ..+..++. |+....+ ....+.+.++|+|+
T Consensus 4 ~~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g--~~~~~~~~~~d~vv 74 (498)
T PRK02006 4 DLQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFVGG--PFDPALLDGVDLVA 74 (498)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEEeC--CCchhHhcCCCEEE
Confidence 4678 9999999999999999999999 9998877754321 22223333 4332111 12345677899999
Q ss_pred Ec--cCC
Q 023490 184 LL--ISD 188 (281)
Q Consensus 184 La--vP~ 188 (281)
.. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 95 565
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.039 Score=53.19 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=43.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
|++|||||.|.+|..+++.++.. |++|++.+......... ....... ..+.| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~-~ad~~~~--~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQ-VADEVIV--ADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhH-hCceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999998 99998887653221111 1111111 01223 5567889998864
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.16 Score=50.09 Aligned_cols=92 Identities=13% Similarity=0.054 Sum_probs=57.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E----~l~~ADVViLavP 187 (281)
..+-|+|+|.+|+.+++.|++. |.++++.+... .+...+.|+..-.+...+.+. -+++||.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d~---~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPLG---LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECch---hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 88877766442 223333343211122333321 3679999999998
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEeC
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLSH 212 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~aa 212 (281)
+.+....+-.....+.|+. ++..+.
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v~ 337 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAVN 337 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 8665544333445566654 444333
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.077 Score=50.85 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=40.7
Q ss_pred EEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCcccHHHHHHCCceec-----CC--CcCCHHhhcC
Q 023490 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NG--TLGDIYETIS 177 (281)
Q Consensus 113 tIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~~s~~~A~~~G~~~~-----~~--t~~~~~E~l~ 177 (281)
+|+|||. |.+|.++|..|... ++ ++.+.++........+.......- .. ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 33 466676542211011111111000 00 0124468899
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
+||+|++..-
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999999543
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=47.62 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=53.6
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc-------------------ccHH---HHHHC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS-------------------RSFA---EARAA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~-------------------~s~~---~A~~~- 160 (281)
...|+. ++|.|||+|-+|..++++|... |. ++.+.+...- +... ...+.
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln 99 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA------GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN 99 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC
Confidence 466888 9999999999999999999988 65 4555543210 1000 01111
Q ss_pred -Cceec--CCCcC--CHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~~--~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.+..+ +.... +.++.++++|+|+.++-.......+++..
T Consensus 100 p~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~ 143 (245)
T PRK05690 100 PHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRAC 143 (245)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHH
Confidence 11110 11111 24567899999999986655545666543
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.094 Score=50.17 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHH-hhcCcCCEEEEcc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~-E~l~~ADVViLav 186 (281)
++|+||| .|..|+.+.+.|.+. ++ ++....+..+...... -.|... ...+.+ +.++++|+||+++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A~ 71 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFSA 71 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEECC
Confidence 7999999 899999999999886 55 3344433321111110 011111 011221 3357899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|.....++..++. +.|+.|++.++
T Consensus 72 g~g~s~~~~~~~~---~~G~~VIDlS~ 95 (334)
T PRK14874 72 GGSVSKKYAPKAA---AAGAVVIDNSS 95 (334)
T ss_pred ChHHHHHHHHHHH---hCCCEEEECCc
Confidence 9876666666543 35777776554
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.087 Score=45.30 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=49.8
Q ss_pred CCCcEEEEEc--cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--cc----H----HHHHHCC--ceecCCCcCCHHh
Q 023490 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RS----F----AEARAAG--FTEENGTLGDIYE 174 (281)
Q Consensus 109 ~G~ktIGIIG--~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--~s----~----~~A~~~G--~~~~~~t~~~~~E 174 (281)
+| +||++|| .+++..+++..+..+ |+++.+....+- .. . +.+.+.| +.. ..+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 9999999 389999999999999 999877766541 11 1 1223334 332 468999
Q ss_pred hcCcCCEEEEccCC
Q 023490 175 TISGSDLVLLLISD 188 (281)
Q Consensus 175 ~l~~ADVViLavP~ 188 (281)
+++++|+|..-.-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999886655
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.089 Score=51.10 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=42.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC--C------ceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G------FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~--G------~~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|++|.++|..|... +. ++.+.+.........+.+. . .... ...+. +.+++||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~--~~~dy-~~~~daDi 108 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL--ASTDY-AVTAGSDL 108 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE--eCCCH-HHhCCCCE
Confidence 5999999999999999999877 65 6667765433222222111 1 1110 01233 45999999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|+++.
T Consensus 109 VVitA 113 (350)
T PLN02602 109 CIVTA 113 (350)
T ss_pred EEECC
Confidence 99973
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.16 Score=47.09 Aligned_cols=127 Identities=12% Similarity=0.042 Sum_probs=73.6
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
.+| +++.|+|.|.+|...++.++.. |.++++..+......+.+.+..+.. ..++.-...|+|+=++.
T Consensus 143 ~~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASG 209 (308)
T ss_pred cCC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCC
Confidence 467 8999999999999999999988 9875555444333344454443321 11112245899999888
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcc-hhhhhhcccCCCCCceEEEeccCCCC--hhhHHhhhhC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCPKGMG--PSVRRLYVQG 251 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~-l~~l~~~~~~~~~~i~VIrvmPntpg--~~vr~~y~~g 251 (281)
... .+++.++.++++..+++.+-.. ...+... ..+.++++++......+. ..+.+++.+|
T Consensus 210 ~~~---~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g 272 (308)
T TIGR01202 210 DPS---LIDTLVRRLAKGGEIVLAGFYTEPVNFDFV-PAFMKEARLRIAAEWQPGDLHAVRELIESG 272 (308)
T ss_pred CHH---HHHHHHHhhhcCcEEEEEeecCCCcccccc-hhhhcceEEEEecccchhHHHHHHHHHHcC
Confidence 633 4556677788887766443211 0011100 012234566554432222 3566777777
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.16 Score=45.20 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=30.8
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
...|+. ++|.|||+|.+|..++++|... |. ++.+.+.
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD~ 51 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVDH 51 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEEC
Confidence 456888 9999999999999999999988 76 4555554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.11 Score=50.29 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=53.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc---EEEE-E-ecCCcccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKV-G-LRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~---~Vii-g-~r~~~~s~~~A~~~G~~~~~~t~~~~-~E~l~~ADVViL 184 (281)
.+|+||| .|..|+.+.+.|... ++ ++.+ . .+...+.... .|... ...+. .+.++++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 7899999 799999999999875 54 3322 2 2221111111 12110 01111 245689999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|.....++..+.. +.|+.||+.++
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~ 101 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSS 101 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCc
Confidence 999886666666543 35888887665
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.074 Score=53.44 Aligned_cols=71 Identities=25% Similarity=0.304 Sum_probs=50.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-H--HHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-F--AEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~--~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
..+.| |+|.|+|+|.-|.+.++.|++. |.+|.+.+.+.... . ......++....+. -..+-..++|+|
T Consensus 3 ~~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~v 73 (448)
T COG0771 3 EDFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLV 73 (448)
T ss_pred ccccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEE
Confidence 34567 9999999999999999999999 99999998664321 1 12224555432222 122678899999
Q ss_pred EEc
Q 023490 183 LLL 185 (281)
Q Consensus 183 iLa 185 (281)
++.
T Consensus 74 V~S 76 (448)
T COG0771 74 VKS 76 (448)
T ss_pred EEC
Confidence 983
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.2 Score=45.37 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=54.8
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~-~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||-|..|..=++.+.+. |.+|++..+.-..... ...+.++.... ...+.++ +..+++|+.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~-~~~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAED-LDDAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhh-hcCceEEEE
Confidence 67999 9999999999999999999888 9988887665422222 23333322111 1224444 445999999
Q ss_pred ccCChhHHH
Q 023490 185 LISDAAQAD 193 (281)
Q Consensus 185 avP~~~~~~ 193 (281)
+|++....+
T Consensus 79 At~d~~ln~ 87 (210)
T COG1648 79 ATDDEELNE 87 (210)
T ss_pred eCCCHHHHH
Confidence 999977654
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.054 Score=51.54 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=42.9
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC----Ccee-cC-CCcCCHHhhcCcCCEEEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTE-EN-GTLGDIYETISGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~----G~~~-~~-~t~~~~~E~l~~ADVViL 184 (281)
||+|||.|.+|.++|..|... +. ++.+.+.........+... -+.. .+ .......+.+++||+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 689999999999999998877 65 6777776533222222211 1110 00 001123578999999999
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.22 Score=45.34 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=60.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh----c--CcCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET----I--SGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~----l--~~AD 180 (281)
.+| .++.|+|.|.+|...++.++.. |.+ |++.++. .+..+.+++.|....-. ..+..+. . ...|
T Consensus 119 ~~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~~-~~r~~~a~~~Ga~~~i~-~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADPS-PDRRELALSFGATALAE-PEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHcCCcEecC-chhhHHHHHHHhCCCCCC
Confidence 378 9999999999999999999998 986 5555433 44567788888642100 0111121 1 2479
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.... .+++.+..++++..++..+
T Consensus 190 ~vid~~G~~~---~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSGATA---AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCCChH---HHHHHHHHhcCCCEEEEec
Confidence 9998876432 4555566778877665433
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.17 Score=48.65 Aligned_cols=78 Identities=15% Similarity=0.143 Sum_probs=53.2
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
.+|+||| .|-.|+.+.+.|... . +++......... . .. +.++.++++|+||+++|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~~~~-------~-~~-------~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEAKRK-------D-AA-------ARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecCCCC-------c-cc-------CchhhhcCCCEEEECCCHH
Confidence 6899999 899999999998876 3 343322222111 0 11 3345667899999999988
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
...++..++. +.|+.|||.++
T Consensus 62 ~s~~~~~~~~---~~g~~VIDlSa 82 (313)
T PRK11863 62 AAREAVALID---NPATRVIDAST 82 (313)
T ss_pred HHHHHHHHHH---hCCCEEEECCh
Confidence 7666666654 35888887654
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.33 Score=45.43 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=63.0
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC---cCCEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLV 182 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~---~ADVV 182 (281)
.+| .++.|+|.|.+|...++.++.. |. +|++.++.. +..+.+++.|.... +..-.+..+..+ ..|+|
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~~-~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVSP-RSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCCH-HHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEE
Confidence 468 9999999999999999999998 98 465555553 45677888886421 100112333332 37999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+=++... ..++..+..++++-.+++.
T Consensus 240 id~~G~~---~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 240 FEVSGHP---SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 9988753 2455566778888776654
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.15 Score=48.77 Aligned_cols=92 Identities=9% Similarity=0.154 Sum_probs=69.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~ 188 (281)
.+|.|.| .|.-|...-+.++++ |-+++.+...+.- ..+-.|+.. +.++.|+-+. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 899999999999999 9888877765420 012246664 6788888765 7999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
....+.+++.... .-..++++++||...
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e~ 107 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQH 107 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCcc
Confidence 8888888876542 224478899999743
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.12 Score=49.21 Aligned_cols=74 Identities=18% Similarity=0.151 Sum_probs=43.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCccc---HHHHH-HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s---~~~A~-~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|||+|||. |.+|.+++..|...+ +.+.++.+.++..... .+... ............++.+.++++|+|+++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcC
Confidence 68999999 999999998885421 1144666666653210 11111 0001110000135578899999999976
Q ss_pred CC
Q 023490 187 SD 188 (281)
Q Consensus 187 P~ 188 (281)
-.
T Consensus 78 G~ 79 (312)
T PRK05086 78 GV 79 (312)
T ss_pred CC
Confidence 54
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.17 Score=47.90 Aligned_cols=67 Identities=25% Similarity=0.337 Sum_probs=42.7
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCC--cccHHHHH-------HCC--ceecCCCcCCHHhhcC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAG--FTEENGTLGDIYETIS 177 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~--~~s~~~A~-------~~G--~~~~~~t~~~~~E~l~ 177 (281)
++|+|||. |.+|..++..|... |. +|++.++.. ......+. ..+ .... ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~--~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK--ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEEE--ECCC-HHHhC
Confidence 68999997 99999999999887 65 477777642 11110110 111 1110 0124 45699
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
+||+|+++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999875
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.067 Score=50.33 Aligned_cols=76 Identities=20% Similarity=0.104 Sum_probs=51.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC--ce---ecCCCcCCHHhhcCcCC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FT---EENGTLGDIYETISGSD 180 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G--~~---~~~~t~~~~~E~l~~AD 180 (281)
+++| +++.|+|.|-.|++++-.|.+. |. +|.+.+|..++..+.+.+.. +. .......+..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 5778 9999999999999999999988 87 68888887655444444321 10 00000112234567899
Q ss_pred EEEEccCCh
Q 023490 181 LVLLLISDA 189 (281)
Q Consensus 181 VViLavP~~ 189 (281)
+||-++|..
T Consensus 197 ivINaTp~G 205 (283)
T PRK14027 197 GVVNATPMG 205 (283)
T ss_pred EEEEcCCCC
Confidence 999999963
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.22 Score=48.03 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=57.4
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC---------------------cccHH---HHHH
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFA---EARA 159 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~---------------------~~s~~---~A~~ 159 (281)
...|.. ++|.|||+|-+|..+|+.|... |. ++.+.++.. .+... ...+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 456888 9999999999999999999988 76 677776541 01111 0111
Q ss_pred C--Cceec----CCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhc
Q 023490 160 A--GFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (281)
Q Consensus 160 ~--G~~~~----~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~ 201 (281)
. .+..+ +-+..+..++++++|+|+.++-......++++....
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~ 139 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQK 139 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 1 11110 001123467899999999998876655577765433
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.11 Score=51.75 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=48.6
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH---HHHHCCceecCCCcCCHHhhcCcCCEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA---EARAAGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~---~A~~~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
.+.| ++|+|+|+|.=|.+.|+.|++. |.+|++.+.+...... ..++.+.... .....+.+.+.|+|+
T Consensus 5 ~~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~d~vV 74 (468)
T PRK04690 5 QLEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLVE---TEASAQRLAAFDVVV 74 (468)
T ss_pred hcCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEEe---CCCChHHccCCCEEE
Confidence 4678 9999999999999999999999 9999888754321111 2222222211 112345678899998
Q ss_pred E--ccCC
Q 023490 184 L--LISD 188 (281)
Q Consensus 184 L--avP~ 188 (281)
. .+|+
T Consensus 75 ~SpgI~~ 81 (468)
T PRK04690 75 KSPGISP 81 (468)
T ss_pred ECCCCCC
Confidence 8 4454
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.33 Score=40.16 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=25.4
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
+|.|||+|.+|..++++|... |+ ++.+.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEcC
Confidence 589999999999999999998 77 5666654
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.12 Score=49.80 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=51.2
Q ss_pred cccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhh
Q 023490 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYET 175 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~----~~A~~~G~~~~~~t~~~~~E~ 175 (281)
..++| ++|++||-+ ++..+++..+..+ |++|.+...+.- .-. +.+++.|...+ ...+++|+
T Consensus 151 g~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (332)
T PRK04284 151 KPYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEG 221 (332)
T ss_pred CCcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 35789 999999975 8899999999888 999888766531 111 12334563211 14689999
Q ss_pred cCcCCEEEEc
Q 023490 176 ISGSDLVLLL 185 (281)
Q Consensus 176 l~~ADVViLa 185 (281)
++++|+|..-
T Consensus 222 ~~~aDvvy~~ 231 (332)
T PRK04284 222 VKGSDVIYTD 231 (332)
T ss_pred hCCCCEEEEC
Confidence 9999999995
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.037 Score=47.27 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=55.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
...+| ++|++||+ +.+ +++.|+.. +.++.+.++.... .. -...++. ..+.++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~-~~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IG-EEPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG----SSCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CC-CCCCcCC-----HHHHHHHHccCCEEEEE
Confidence 55678 99999996 322 77777766 7899999987532 11 1112233 34778999999999985
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
-.- -...-+++++.+.++++.+++.
T Consensus 70 GsT-lvN~Ti~~iL~~~~~~~~vil~ 94 (147)
T PF04016_consen 70 GST-LVNGTIDDILELARNAREVILY 94 (147)
T ss_dssp CHH-CCTTTHHHHHHHTTTSSEEEEE
T ss_pred eee-eecCCHHHHHHhCccCCeEEEE
Confidence 331 1123567788888877766543
|
; PDB: 3L5O_B 3NPG_A. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.24 Score=47.41 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=42.0
Q ss_pred EEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCcc--cHHHHHHCC-ceecCCCc-CCHHhhcCcCCEEEEc
Q 023490 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARAAG-FTEENGTL-GDIYETISGSDLVLLL 185 (281)
Q Consensus 113 tIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~--s~~~A~~~G-~~~~~~t~-~~~~E~l~~ADVViLa 185 (281)
||+|||. |++|.++|-.|... +. ++++.+..... ..+...... ......+- .+..+.+++||+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEe
Confidence 6899999 99999999998776 54 67777654311 111111100 11100000 1346899999999986
Q ss_pred cCC
Q 023490 186 ISD 188 (281)
Q Consensus 186 vP~ 188 (281)
.-.
T Consensus 75 aG~ 77 (312)
T TIGR01772 75 AGV 77 (312)
T ss_pred CCC
Confidence 543
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.08 Score=53.91 Aligned_cols=74 Identities=24% Similarity=0.181 Sum_probs=50.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLa 185 (281)
+++| +++.|+|.|-+|++++..|.+. |.+|.+.+|..++..+.+.+.+... -...+..+. ...+|+|+-+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEec
Confidence 4778 9999999999999999999998 8898888886544444444433211 001222222 2357888888
Q ss_pred cCCh
Q 023490 186 ISDA 189 (281)
Q Consensus 186 vP~~ 189 (281)
+|..
T Consensus 447 T~vG 450 (529)
T PLN02520 447 TSVG 450 (529)
T ss_pred ccCC
Confidence 8764
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=49.03 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.5
Q ss_pred EEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCC--cccH----HHHHH-----CCceecCCCcCCHH
Q 023490 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARA-----AGFTEENGTLGDIY 173 (281)
Q Consensus 113 tIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~--~~s~----~~A~~-----~G~~~~~~t~~~~~ 173 (281)
+|+|||. |.+|..++..|... ++ ++.+.+... +... +.... .++.. ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999988865 32 466666653 1110 00000 01111 13567
Q ss_pred hhcCcCCEEEEcc
Q 023490 174 ETISGSDLVLLLI 186 (281)
Q Consensus 174 E~l~~ADVViLav 186 (281)
+.+++||+|+++.
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8999999999854
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.19 Score=52.11 Aligned_cols=73 Identities=21% Similarity=0.148 Sum_probs=53.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (281)
.| ++|.|||.|..|.+.|..|+.. |++|+++++... ...+...+.|+...-++
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 58 9999999999999999999998 999999886642 12344566776432111
Q ss_pred ----cCCHHhhcCcCCEEEEccCC
Q 023490 169 ----LGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 169 ----~~~~~E~l~~ADVViLavP~ 188 (281)
..+++++..+.|.|++++--
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCCC
Confidence 12455677789999997753
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.33 Score=46.17 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=61.5
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhcCcCCEEEEcc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~-~t~~~~~E~l~~ADVViLav 186 (281)
.| .+|.|+|.|.+|...++.++.. |.+|++......+..+.+++.|.... + .....+.+.....|+|+=++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 68 8999999999999999999998 98877665554444445567776320 0 00011233344579999887
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.... .+++.+..++++..++..
T Consensus 256 g~~~---~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAVH---ALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCHH---HHHHHHHHhcCCcEEEEe
Confidence 6422 455566778887765543
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.12 Score=51.22 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=51.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhh----hccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~----~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViL 184 (281)
.+|||||+|.+|+.+++.|..... ..|.+++|. ++++...+. +.....+.. ...+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~~~~~~~~----~~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RGVDLPGIL----LTTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cCCCCcccc----eeCCHHHHhhCCCCCEEEE
Confidence 579999999999999988865411 122344543 445442211 100001111 1457889885 4799999
Q ss_pred ccCChh-HHHHHHHHHhcCCCCcEEEE
Q 023490 185 LISDAA-QADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 185 avP~~~-~~~vl~ei~~~mKpgaILi~ 210 (281)
+++... +.+.+. ..|+.|..|+.
T Consensus 79 ~tg~~~~~~~~~~---~aL~~GkhVVt 102 (426)
T PRK06349 79 LMGGIEPARELIL---KALEAGKHVVT 102 (426)
T ss_pred CCCCchHHHHHHH---HHHHCCCeEEE
Confidence 987643 223333 33455665554
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.047 Score=54.29 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=43.4
Q ss_pred CcEEEEEccCchHHHHHH--HHHhhhhhccCCcEEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhcCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~--~Lra~~~~~~~G~~Viig~r~~~~s~~~A--------~~~G~~~~~~t~~~~~E~l~~AD 180 (281)
|+||+|||.|++|.+.+. .+... ..-.+.+|++.+...++ .+.+ ...+...+-....+..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid~er-~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDIDPER-LEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCCHHH-HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 479999999999866554 44311 01114578777765322 2211 12221110011357789999999
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+|+..+-.
T Consensus 78 fVv~ti~v 85 (431)
T PRK15076 78 YVINAIQV 85 (431)
T ss_pred EEeEeeee
Confidence 99997654
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.17 Score=48.44 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=51.6
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-c-H----HHHHHCC-ceecCCCcCCHHhhcCc
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S-F----AEARAAG-FTEENGTLGDIYETISG 178 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s-~----~~A~~~G-~~~~~~t~~~~~E~l~~ 178 (281)
.++| ++|++||- +++..+++..+..+ |++|.+..++.-. . . +.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 5899 99999996 69999999999888 9999888765421 1 1 2233334 332 4589999999
Q ss_pred CCEEEEcc
Q 023490 179 SDLVLLLI 186 (281)
Q Consensus 179 ADVViLav 186 (281)
+|+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999944
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.083 Score=47.88 Aligned_cols=79 Identities=9% Similarity=0.221 Sum_probs=49.6
Q ss_pred CcEEEEEccCchHHHHHHHH--HhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEcc
Q 023490 111 INQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~L--ra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLav 186 (281)
+.++.|||.||+|+|++.-- ... ||+++...+.+.... -.+-.++... ...++++.++ +.|+.+|++
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~V-G~~~~~v~V~--~~d~le~~v~~~dv~iaiLtV 154 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKV-GTKIGDVPVY--DLDDLEKFVKKNDVEIAILTV 154 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHh-CcccCCeeee--chHHHHHHHHhcCccEEEEEc
Confidence 46799999999999998642 233 777766655543211 1112234431 1446677777 789999999
Q ss_pred CChhHHHHHHHH
Q 023490 187 SDAAQADNYEKI 198 (281)
Q Consensus 187 P~~~~~~vl~ei 198 (281)
|-...-++.+.+
T Consensus 155 Pa~~AQ~vad~L 166 (211)
T COG2344 155 PAEHAQEVADRL 166 (211)
T ss_pred cHHHHHHHHHHH
Confidence 975544455543
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.29 Score=45.90 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
.| .++.|+|.|.+|...++.++.. |.+|++..+..+ ..+.+++.|.... ....++.-+..|+++.+...
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~~~-~~~~a~~~Ga~~v---i~~~~~~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRGAA-ARRLALALGAASA---GGAYDTPPEPLDAAILFAPA 233 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCChH-HHHHHHHhCCcee---ccccccCcccceEEEECCCc
Confidence 57 8999999999999999999988 988776666543 4678889987531 11111112357888877665
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEe
Q 023490 189 AAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~a 211 (281)
. ..+.+.++.++++-.+++.
T Consensus 234 ~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 234 G---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred H---HHHHHHHHhhCCCcEEEEE
Confidence 3 3566777888888876543
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.36 Score=46.22 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=76.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcC-CH----Hhhc--CcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DI----YETI--SGS 179 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~-~~----~E~l--~~A 179 (281)
..| .++.|+|.|.||.-.++.++.. |...++..+..+...+.|++ .|......... +. .+.- ..+
T Consensus 167 ~~~-~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPG-GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 444 5899999999999999999888 87444444554556778877 44432100001 11 1222 359
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEe---CCcc-hhhhhhcccCCCCCceEEEecc-CC-CC-hhhHHhhhhCc
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS---HGFL-LGHLQSIGLDFPKNIGVIAVCP-KG-MG-PSVRRLYVQGK 252 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~a---aG~~-l~~l~~~~~~~~~~i~VIrvmP-nt-pg-~~vr~~y~~g~ 252 (281)
|++|-++-. ...+++.+..++++-.+++. ++.. ...... .+.+++++..... -. .. +.+-++...||
T Consensus 240 D~vie~~G~---~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~---~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~ 313 (350)
T COG1063 240 DVVIEAVGS---PPALDQALEALRPGGTVVVVGVYGGEDIPLPAGL---VVSKELTLRGSLRPSGREDFERALDLLASGK 313 (350)
T ss_pred CEEEECCCC---HHHHHHHHHHhcCCCEEEEEeccCCccCccCHHH---HHhcccEEEeccCCCCcccHHHHHHHHHcCC
Confidence 999999993 33667777788887765433 2221 111111 3345667776522 22 12 23556666764
|
|
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.23 Score=47.19 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=51.3
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHH----HHHCCceecCCCcCCHHhhc
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAE----ARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~----A~~~G~~~~~~t~~~~~E~l 176 (281)
..++| .+|++||- .+...+++..+..+ |++|.+...+.-.. .+. +.+.|...+ ...++++++
T Consensus 144 g~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 214 (304)
T TIGR00658 144 GKLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAV 214 (304)
T ss_pred CCCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 34889 99999995 78999999999888 99988876553211 111 234453211 146899999
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|..-+
T Consensus 215 ~~aDvvy~~~ 224 (304)
T TIGR00658 215 KGADVIYTDV 224 (304)
T ss_pred CCCCEEEEcC
Confidence 9999999853
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.37 Score=43.34 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.4
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
...|+. ++|.|||+|-+|..+|+.|... |. ++.+.|+.
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDFD 61 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCC
Confidence 466888 9999999999999999999988 76 46666544
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.13 Score=49.64 Aligned_cols=89 Identities=21% Similarity=0.178 Sum_probs=50.8
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCc---EEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|+|+| .|..|+.+.+.|.+. ++ ++.......+ +...... .....+ -.+.++ ++++|+||+
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~-~~l~~~---~~~~~~-~~~vD~vFl 72 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAG-KNLRVR---EVDSFD-FSQVQLAFF 72 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCC-cceEEe---eCChHH-hcCCCEEEE
Confidence 36899999 699999999999965 44 2222221111 1111000 011110 012233 589999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|.....++.++... .|..+||.++
T Consensus 73 a~p~~~s~~~v~~~~~---~G~~VIDlS~ 98 (336)
T PRK05671 73 AAGAAVSRSFAEKARA---AGCSVIDLSG 98 (336)
T ss_pred cCCHHHHHHHHHHHHH---CCCeEEECch
Confidence 9997544455555433 4777887654
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.097 Score=52.58 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
.+++| ++|.|.|+|+.|+..|+.|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 56899 9999999999999999999988 998775533
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.16 Score=46.12 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=48.0
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t---~~~~~E~l~~ADVViLavP 187 (281)
|||+||| .|..|..+++-+.+. |++|....|..++. +...+.+..... .....+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~---~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKL---AARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhc---cccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6899999 799999999999999 99998888875432 111333211111 2234478899999999764
Q ss_pred C
Q 023490 188 D 188 (281)
Q Consensus 188 ~ 188 (281)
.
T Consensus 72 ~ 72 (211)
T COG2910 72 A 72 (211)
T ss_pred C
Confidence 4
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.17 Score=49.60 Aligned_cols=72 Identities=24% Similarity=0.199 Sum_probs=48.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHH--CCceecCCCcCCHHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARA--AGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~--~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
+.| ++|.|+|.|.+|.+.|+.|.+. |++|.+.+...... .+..++ .|+....+ ...++.+.+.|+|+.
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv~ 73 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILAL 73 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEEE
Confidence 678 9999999999999999999999 99988887654321 222222 36543111 112344578999998
Q ss_pred --ccCC
Q 023490 185 --LISD 188 (281)
Q Consensus 185 --avP~ 188 (281)
++|+
T Consensus 74 spgi~~ 79 (445)
T PRK04308 74 SPGISE 79 (445)
T ss_pred CCCCCC
Confidence 4554
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.13 Score=49.07 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=42.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCc--ccHHHHHHCC-ceecCC-CcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~--~s~~~A~~~G-~~~~~~-t~~~~~E~l~~ADVViL 184 (281)
+||+|||. |++|.++|-.|... ++ ++++.+.... ...+...... ...... ...++.+.+++||+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999876 64 5666665411 1112111111 111000 01234688999999998
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 643
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.2 Score=45.95 Aligned_cols=88 Identities=14% Similarity=0.197 Sum_probs=54.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc-------------------ccHH---HHHHC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS-------------------RSFA---EARAA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~-------------------~s~~---~A~~~- 160 (281)
...|++ ++|.|||.|-+|..+|+.|... |. ++.+.|+..- +... ...+.
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in 91 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN 91 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence 466889 9999999999999999999988 65 4555443210 1010 11111
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.+..+ +... .+..+.++++|+|+.++-.......+++..
T Consensus 92 p~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~ 135 (240)
T TIGR02355 92 PHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC 135 (240)
T ss_pred CCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence 11110 0111 124567899999999997765555677544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.31 Score=44.34 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=30.4
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEe
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~ 147 (281)
...|++ ++|.|||+|-+|..++++|... |. ++.+.|
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~------Gvg~i~lvD 58 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA------GVGRILLID 58 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEc
Confidence 467889 9999999999999999999988 76 455554
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.17 Score=48.30 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=49.6
Q ss_pred cccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
..++| ++|++||- +++..+++..+..+ |+++.+...++-.... . ..+.. ..+++|+++++|+|
T Consensus 152 G~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvv 217 (305)
T PRK00856 152 GRLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVV 217 (305)
T ss_pred CCCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEE
Confidence 35889 99999996 69999999999998 9998887765422111 0 01222 56899999999999
Q ss_pred EEcc
Q 023490 183 LLLI 186 (281)
Q Consensus 183 iLav 186 (281)
..-.
T Consensus 218 yt~~ 221 (305)
T PRK00856 218 MMLR 221 (305)
T ss_pred EECC
Confidence 8844
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.19 Score=48.71 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=50.9
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHH----HHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFA----EARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~----~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| .+|++||-+ ++..+++..+..+ |++|.+...+.-. ..+ .+++.|...+ ...+++|++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999976 7899999999888 9998877655311 111 2333453211 146899999
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.24 Score=49.29 Aligned_cols=73 Identities=25% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (281)
.| ++|.|||.|..|-+.|..|+.. |++|+++++... ...+..++.|+...-++
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 68 9999999999999999999998 999988876531 12345667786542111
Q ss_pred c----CCHHhhcCcCCEEEEccCC
Q 023490 169 L----GDIYETISGSDLVLLLISD 188 (281)
Q Consensus 169 ~----~~~~E~l~~ADVViLavP~ 188 (281)
. ...+++..+.|.|++++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1344555689999998754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.24 Score=47.43 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=52.6
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCC-cEEEEEecCC-cccHHHHHHCCc------e--ecCCCcCC-HHhhcCcC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKG-SRSFAEARAAGF------T--EENGTLGD-IYETISGS 179 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~-~~s~~~A~~~G~------~--~~~~t~~~-~~E~l~~A 179 (281)
++|+|+| .|.||+.+++.|... . +++....+.. +..........+ . ..+-.+.+ .++.+.++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 4799999 599999999988765 4 5655442221 110111111110 0 00000111 12356899
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|+|++++|.....++..++.. .|..+++.+|
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg 105 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNAS 105 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECCh
Confidence 999999999877666654433 4777776555
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.44 Score=44.82 Aligned_cols=91 Identities=22% Similarity=0.235 Sum_probs=58.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHh-hhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra-~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
+| .++.|+|.|.+|...++.++. . | .+|++.++.. +..+.+++.+... ...+..+-. ..|+|+=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~~-~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKHQ-EKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCcH-hHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 57 899999999999998888875 4 4 4676666553 3345566555432 011111211 479999888
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
........+++.+..++++-.+++.
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 7432334677778889998766543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.19 Score=48.56 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=50.7
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----H----HHHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----F----AEARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~----~~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| .+|++||-+ ++..+++..+..+ |++|.++..+.-.. . +.+++.|...+ ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5889 999999986 6888888888888 99988876553211 1 12334453221 146899999
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999843
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.25 Score=45.85 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.6
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViLavP 187 (281)
|+|.|+| .|.+|+.+++.|.+. |++|++..|...+. ......++....+... ++.++++++|+|+-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999999 99998888764321 1112234432111222 35677999999998654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.16 Score=48.92 Aligned_cols=131 Identities=10% Similarity=0.103 Sum_probs=74.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCccc--HHHHHHC-CceecC-CCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARAA-GFTEEN-GTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s--~~~A~~~-G~~~~~-~t~~~~~E~l~~ADVViL 184 (281)
+||+|||. |++|.++|..|... +. ++.+.+....+. .+..... .....+ ....+..+.+++||+|++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 79999999 99999999999865 44 677776543111 1111000 011111 012356789999999999
Q ss_pred ccCC--h--hH-HHHH-------HHHHhcC---CCCcEEEEeCC-cc-----hh-hhhhcccCCCCCceEEEeccCCCCh
Q 023490 185 LISD--A--AQ-ADNY-------EKIFSCM---KPNSILGLSHG-FL-----LG-HLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 185 avP~--~--~~-~~vl-------~ei~~~m---KpgaILi~aaG-~~-----l~-~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+.-. . .. .+++ .++.+.+ .|+++|+++.- +. +. .+.. ...+|+ .+|+... ..-..
T Consensus 93 tAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~-~s~~p~-~~viG~~-~LDs~ 169 (323)
T PLN00106 93 PAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKK-AGVYDP-KKLFGVT-TLDVV 169 (323)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHH-cCCCCc-ceEEEEe-cchHH
Confidence 6432 1 11 1222 2333333 46777765543 22 22 2222 123444 4788886 66666
Q ss_pred hhHHhhhhC
Q 023490 243 SVRRLYVQG 251 (281)
Q Consensus 243 ~vr~~y~~g 251 (281)
.+|++|-+.
T Consensus 170 Rl~~~lA~~ 178 (323)
T PLN00106 170 RANTFVAEK 178 (323)
T ss_pred HHHHHHHHH
Confidence 788888776
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.17 Score=51.41 Aligned_cols=75 Identities=20% Similarity=0.214 Sum_probs=52.3
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC--------------------cccHHHHHHCCceecC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEEN 166 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~--------------------~~s~~~A~~~G~~~~~ 166 (281)
.-.| ++|.|||.|.+|-+.|..|+.. |++|++.++.. ....+.+++.|+...-
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 3578 9999999999999999999998 99998887431 1123456778864321
Q ss_pred CC-c-C--CHHhhcCcCCEEEEccCC
Q 023490 167 GT-L-G--DIYETISGSDLVLLLISD 188 (281)
Q Consensus 167 ~t-~-~--~~~E~l~~ADVViLavP~ 188 (281)
++ . . +.+++-...|+|++++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 11 1 1 234445568999998764
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.3 Score=46.25 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=40.9
Q ss_pred EEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCC---------ceecCCCcCCHHhhcCcCCEEEE
Q 023490 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 116 IIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G---------~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|||.|.+|.++|..|... ++ ++.+.+.........+.+.. ... ..+..+.+++||+|++
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i----~~~~~~~~~daDivVi 70 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKI----RSGDYSDCKDADLVVI 70 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEE----ecCCHHHHCCCCEEEE
Confidence 799999999999999877 65 67777765432222222111 111 1234578999999999
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
..-
T Consensus 71 tag 73 (299)
T TIGR01771 71 TAG 73 (299)
T ss_pred CCC
Confidence 654
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.64 Score=42.68 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=56.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~ADVViL 184 (281)
-+++| +++.|||.|.+|..=++.|.++ |.+|.+....-........+.| +......+ +. +-++.+++|+.
T Consensus 21 l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~~-~~-~dl~g~~LVia 91 (223)
T PRK05562 21 LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGNY-DK-EFIKDKHLIVI 91 (223)
T ss_pred EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-Ch-HHhCCCcEEEE
Confidence 46789 9999999999999988888888 9888877655333232222222 33211111 22 34789999999
Q ss_pred ccCChhHHHHHHH
Q 023490 185 LISDAAQADNYEK 197 (281)
Q Consensus 185 avP~~~~~~vl~e 197 (281)
+|.+.+..+.+.+
T Consensus 92 ATdD~~vN~~I~~ 104 (223)
T PRK05562 92 ATDDEKLNNKIRK 104 (223)
T ss_pred CCCCHHHHHHHHH
Confidence 9998776654443
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.24 Score=47.89 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=53.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHHH---HC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A~---~~- 160 (281)
...|+. ++|.|||+|-+|..++++|... |. ++.+.++.. .+....++ +.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 466888 9999999999999999999887 66 455555431 01111111 11
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.+..+ .... .+..+.++++|+|+.++-......++++..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 0011 123578899999999987655555666543
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.23 Score=48.05 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred cccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HH----HHHHCCceecCCCcCCHHhh
Q 023490 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FA----EARAAGFTEENGTLGDIYET 175 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~----~A~~~G~~~~~~t~~~~~E~ 175 (281)
..++| .||++||-+ ++..+++..+..+ |++|.+..++.-.. .+ .++..|...+ ...+++++
T Consensus 151 g~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (331)
T PRK02102 151 GPLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEA 221 (331)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 35889 999999987 8899999998888 99988776553211 11 2334453321 14689999
Q ss_pred cCcCCEEEEcc
Q 023490 176 ISGSDLVLLLI 186 (281)
Q Consensus 176 l~~ADVViLav 186 (281)
++++|+|..-+
T Consensus 222 ~~~aDvvyt~~ 232 (331)
T PRK02102 222 VKGADVIYTDV 232 (331)
T ss_pred hCCCCEEEEcC
Confidence 99999999953
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.11 Score=50.56 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=77.3
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh-------hc----
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-------TI---- 176 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E-------~l---- 176 (281)
=+| .+++|+|+|..|.+++++.|+. |..-+|+.+-+.+..+.+++.|+++ +.++.+ ++
T Consensus 191 ~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe----~iNp~d~~~~i~evi~EmT 259 (375)
T KOG0022|consen 191 EPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE----FINPKDLKKPIQEVIIEMT 259 (375)
T ss_pred CCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce----ecChhhccccHHHHHHHHh
Confidence 367 9999999999999999999999 9866788888777789999999885 333332 22
Q ss_pred -CcCCEEEEccCChhHHHHHHHHHhcCCC--CcEE--EE-eCCcch--hhhhhcccCCCC--CceEE-EeccCCCChhhH
Q 023490 177 -SGSDLVLLLISDAAQADNYEKIFSCMKP--NSIL--GL-SHGFLL--GHLQSIGLDFPK--NIGVI-AVCPKGMGPSVR 245 (281)
Q Consensus 177 -~~ADVViLavP~~~~~~vl~ei~~~mKp--gaIL--i~-aaG~~l--~~l~~~~~~~~~--~i~VI-rvmPntpg~~vr 245 (281)
-..|+=+=|+-.. +++.+.+..-++ |..+ .+ .+|-.+ .-++ +..+. .-.++ ..-|+.-=|-+.
T Consensus 260 dgGvDysfEc~G~~---~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~---l~~GR~~~Gs~FGG~K~~~~iP~lV 333 (375)
T KOG0022|consen 260 DGGVDYSFECIGNV---STMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQ---LVTGRTWKGSAFGGFKSKSDIPKLV 333 (375)
T ss_pred cCCceEEEEecCCH---HHHHHHHHHhhcCCCeEEEEEecCCCcccccchhh---hccccEEEEEecccccchhhhhHHH
Confidence 1356666555542 234433333333 4433 23 233222 1111 11111 01112 346677777888
Q ss_pred HhhhhCc
Q 023490 246 RLYVQGK 252 (281)
Q Consensus 246 ~~y~~g~ 252 (281)
..|.+|+
T Consensus 334 ~~y~~~~ 340 (375)
T KOG0022|consen 334 KDYMKKK 340 (375)
T ss_pred HHHHhCc
Confidence 8888874
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.52 Score=42.13 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=48.0
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC----HHhhc-Cc
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~~----~~E~l-~~ 178 (281)
+...+ |+|.|+| .|.+|+.+++.|.+. |++|+...|...+......+ .++....+...+ +.+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 34567 9999999 599999999999998 99988777664321111111 122211111222 33455 58
Q ss_pred CCEEEEccCC
Q 023490 179 SDLVLLLISD 188 (281)
Q Consensus 179 ADVViLavP~ 188 (281)
.|+|+.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 9999987654
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.32 Score=38.91 Aligned_cols=83 Identities=25% Similarity=0.284 Sum_probs=48.4
Q ss_pred ccCchHHHHHHHHHhhhhhccCCcEEE-EEecC--CcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCChhHH
Q 023490 118 GWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRK--GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (281)
Q Consensus 118 G~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~--~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~~~~~ 192 (281)
|+|+||+.+++.|...-.. .+++|. +++++ -.... .....+... ..++++++. +.|+|+=|++.....
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDW-AASFPDEAF----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTH-HHHHTHSCE----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhh-hhhcccccc----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999886111 245543 44544 11111 111122221 458899988 999999998887777
Q ss_pred HHHHHHHhcCCCCcEEEE
Q 023490 193 DNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 193 ~vl~ei~~~mKpgaILi~ 210 (281)
+.+.+.+. .|.-|+.
T Consensus 74 ~~~~~~L~---~G~~VVt 88 (117)
T PF03447_consen 74 EYYEKALE---RGKHVVT 88 (117)
T ss_dssp HHHHHHHH---TTCEEEE
T ss_pred HHHHHHHH---CCCeEEE
Confidence 77666544 5665543
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.28 Score=47.17 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=52.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHHCCc-------------eecCCCcCCHHhhc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGF-------------TEENGTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~~G~-------------~~~~~t~~~~~E~l 176 (281)
++|+|+| .|.+|+.+++.|.+. ..+++....+..+..- ......++ ..+ ..+. +.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~-~~~ 74 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVV---STDP-EAV 74 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEE---eCCH-HHh
Confidence 7899998 899999999999875 1346554423211000 00000111 100 1133 345
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.++|+|++++|.....++.+++. +.|..+++.+|
T Consensus 75 ~~~DvVf~a~p~~~s~~~~~~~~---~~G~~vIDls~ 108 (349)
T PRK08664 75 DDVDIVFSALPSDVAGEVEEEFA---KAGKPVFSNAS 108 (349)
T ss_pred cCCCEEEEeCChhHHHHHHHHHH---HCCCEEEECCc
Confidence 89999999999876655554433 24676776555
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.17 Score=47.41 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccC
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLIS 187 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLavP 187 (281)
+ +++.|+|.|-.+++++..|... |. +|.+.+|..++..+.+...+... . ++. ...+|+||-++|
T Consensus 122 ~-~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~~-----~--~~~~~~~~dlvINaTp 187 (272)
T PRK12550 122 D-LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYEW-----R--PDLGGIEADILVNVTP 187 (272)
T ss_pred C-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCcc-----h--hhcccccCCEEEECCc
Confidence 5 7899999999999999999988 87 58899998665555555544321 1 111 256899999999
Q ss_pred Ch
Q 023490 188 DA 189 (281)
Q Consensus 188 ~~ 189 (281)
..
T Consensus 188 ~G 189 (272)
T PRK12550 188 IG 189 (272)
T ss_pred cc
Confidence 64
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.44 Score=46.20 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=55.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC-------------------CcccHHHHHHC-----
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA----- 160 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~-------------------~~~s~~~A~~~----- 160 (281)
..|++ ++|.|||+|-+|..+++.|... |. ++.+.++. ..+....+++.
T Consensus 131 ~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np 203 (376)
T PRK08762 131 RRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP 203 (376)
T ss_pred HHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence 56888 9999999999999999999988 76 56666654 11111111111
Q ss_pred Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHHhc
Q 023490 161 GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (281)
Q Consensus 161 G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~ 201 (281)
.+..+ .... .+.++.++++|+|+.++-.......+++....
T Consensus 204 ~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~ 248 (376)
T PRK08762 204 DVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVK 248 (376)
T ss_pred CCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH
Confidence 11110 0011 12456788999999988765544466654433
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.29 Score=47.79 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=56.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHH---HHC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEA---RAA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A---~~~- 160 (281)
...|.+ ++|.|||+|-+|..+++.|... |. ++.+.++.. .+....+ .+.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 566665431 0100001 111
Q ss_pred -Cce--ecCCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHHh
Q 023490 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (281)
Q Consensus 161 -G~~--~~~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~~ 200 (281)
.+. ...... .+.++.++++|+|+-|+-......+++++..
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 111 100111 2345789999999888877666567776443
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.52 Score=41.00 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.8
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
+|.|||+|-+|..+++.|... |. ++.+.|+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCC
Confidence 589999999999999999888 76 46666654
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.25 Score=47.48 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=53.0
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHH----HHHCC--ceecCCCcCCHHhhc
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAE----ARAAG--FTEENGTLGDIYETI 176 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~----A~~~G--~~~~~~t~~~~~E~l 176 (281)
|+| +|+..||=| ||+.++....... ||++.+..+++-.. .+. +++.| +.. ..|++|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 889 999999966 8999999988888 99999887664321 222 33344 443 45899999
Q ss_pred CcCCEEEEccCC
Q 023490 177 SGSDLVLLLISD 188 (281)
Q Consensus 177 ~~ADVViLavP~ 188 (281)
++||+|..=+..
T Consensus 220 ~gADvvyTDvWv 231 (310)
T COG0078 220 KGADVVYTDVWV 231 (310)
T ss_pred CCCCEEEecCcc
Confidence 999999986654
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.28 Score=47.50 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=51.0
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----H----HHHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----F----AEARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~----~~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| .+|++||-+ ++..+++..+..+ |+++.+...+.-.. . +.+++.|...+ ...+++|++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5889 999999976 7899999999888 99988876653211 1 22344553221 246899999
Q ss_pred CcCCEEEEc
Q 023490 177 SGSDLVLLL 185 (281)
Q Consensus 177 ~~ADVViLa 185 (281)
+++|+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999985
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.13 Score=48.97 Aligned_cols=97 Identities=13% Similarity=0.055 Sum_probs=68.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccC-CcEEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~-G~~Viig~r~~~~s~~~A~~~G-----~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.-+.|+|.|.++........+.. + =-+|.|+++..+...+.|.... +..+-....+.+++++.+|||+-+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~----pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~a 214 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLI----PSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGA 214 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhc----ccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEec
Confidence 45789999999999888776651 1 1278999998876666666221 111112256788999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
++-.+- ++. ...+|||+.|-++++|+.
T Consensus 215 tlsteP--ilf--gewlkpgthIdlVGsf~p 241 (333)
T KOG3007|consen 215 TLSTEP--ILF--GEWLKPGTHIDLVGSFKP 241 (333)
T ss_pred cccCCc--eee--eeeecCCceEeeeccCCc
Confidence 986431 221 246899999999999985
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.52 Score=46.79 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=65.8
Q ss_pred cccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH-Hh
Q 023490 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~-~E 174 (281)
..++| ++|+|.|+ .+-+..+++.|++. |.+|.++|..-.. .+..+..+.. .. ..
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~-------~~~~~ 374 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVDA-EEVRREYGII-------PVSEV 374 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCCh-hHHHHhcCcc-------cchhh
Confidence 35789 99999998 56788899999988 9999988765211 1111223332 11 23
Q ss_pred hcCcCCEEEEccCChhHHHH-HHHHHhcCCCCcEEEEeCCcc
Q 023490 175 TISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~~v-l~ei~~~mKpgaILi~aaG~~ 215 (281)
.++++|+|++++.-.+..++ ++++...|+...+|++..++.
T Consensus 375 ~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~ 416 (425)
T PRK15182 375 KSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVL 416 (425)
T ss_pred hhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCC
Confidence 47789999999998776653 456666677556888877654
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.23 Score=52.83 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=47.8
Q ss_pred CcEEEEEccCchHHHH-HHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 111 INQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG~G~mG~Ai-A~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+++|.|||+|..|.+. |+.|++. |++|.+.+.......+..++.|+... .....+.+.++|+|++.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 3579999999999998 9999999 99998877654333334456677642 12234667889999873
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.3 Score=46.63 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=66.7
Q ss_pred hcccchhhhhcCCCccccc--ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----
Q 023490 86 LANRDEFIVRGGRDLFKLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---- 159 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f~~~--~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~---- 159 (281)
|.+|.+| .+=++=++.+. ...... ++|..||.|..|-+-.-.++..+ .+-.+ ++.+.++...+.|++
T Consensus 99 Fpy~~nY-~~L~~lE~~~L~~~~~~~p-~~VldIGcGpgpltaiilaa~~~----p~~~~-~giD~d~~ai~~Ar~~~~~ 171 (296)
T PLN03075 99 FPYYNNY-LKLSKLEFDLLSQHVNGVP-TKVAFVGSGPLPLTSIVLAKHHL----PTTSF-HNFDIDPSANDVARRLVSS 171 (296)
T ss_pred CCchHHH-HHHHHHHHHHHHHhhcCCC-CEEEEECCCCcHHHHHHHHHhcC----CCCEE-EEEeCCHHHHHHHHHHhhh
Confidence 5666666 66554444331 112256 99999999998875544443321 12244 455554544444443
Q ss_pred -CCceec-CCCcCCHHh---hcCcCCEEEEccC----ChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 160 -AGFTEE-NGTLGDIYE---TISGSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 160 -~G~~~~-~~t~~~~~E---~l~~ADVViLavP----~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.|+... .-...+..+ -..+-|+|++.+= .....++++.+.+.|+||.+|++-
T Consensus 172 ~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 172 DPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred ccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 221100 000122222 2468999999841 123456899999999999988754
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.29 Score=48.49 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=50.2
Q ss_pred ccCCCcEEEEEcc-----C---chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcC
Q 023490 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLG 170 (281)
Q Consensus 107 ~l~G~ktIGIIG~-----G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G~~~~~~t~~ 170 (281)
.++| +||+|+|- | ++..+++..+..+ |++|.+...++- +-.+. +++.|...+ ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3788 89999985 4 6778999988888 999988876632 11122 344453221 146
Q ss_pred CHHhhcCcCCEEEEcc
Q 023490 171 DIYETISGSDLVLLLI 186 (281)
Q Consensus 171 ~~~E~l~~ADVViLav 186 (281)
+++|+++++|+|..-+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.31 Score=47.63 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=45.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
++.+ ++|.|||+|..|.+.++.|++. |++|...+...........+.|+....+ ....+.++..|+|+.
T Consensus 3 ~~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~~--~~~~~~~~~~d~vv~ 71 (438)
T PRK03806 3 DYQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHTG--SLNDEWLLAADLIVA 71 (438)
T ss_pred ccCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEeC--CCCHHHhcCCCEEEE
Confidence 4667 9999999999999999999988 9998877754332111112336543111 122345678897776
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.22 Score=49.61 Aligned_cols=86 Identities=20% Similarity=0.168 Sum_probs=59.9
Q ss_pred cCCCcEEEEEccC----------chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHHhh
Q 023490 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (281)
Q Consensus 108 l~G~ktIGIIG~G----------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--G~~~~~~t~~~~~E~ 175 (281)
|+| |+|||.|+- +-...++..|.+. |.+|+++++... +.+... ++.. ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~a~---~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPVAM---ENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECchhh---HHHHhcCCCceE----eCCHHHH
Confidence 899 999999973 3355677777777 999998887632 222222 2333 5689999
Q ss_pred cCcCCEEEEccCChhHHHHH-HHHHhcCCCCcEEEE
Q 023490 176 ISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGL 210 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl-~ei~~~mKpgaILi~ 210 (281)
+++||+|++++-..+..++= +.+ .|| +.+|++
T Consensus 374 ~~~aDaivi~tew~ef~~~d~~~~--~m~-~~~v~D 406 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLDFEKL--LMK-TPVVID 406 (414)
T ss_pred HhhCCEEEEeccHHHHhccChhhh--hcc-CCEEEe
Confidence 99999999999987766542 333 565 445554
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.3 Score=46.46 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=52.4
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HHH-HHHCCceecCCCcCCHHhhcCcC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAE-ARAAGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~~-A~~~G~~~~~~t~~~~~E~l~~A 179 (281)
..++| .+|++||- ++...+++..+..+ |++|.+...+.-.. .+. +++.|...+ ...+++|+++++
T Consensus 148 g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 218 (304)
T PRK00779 148 GSLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGA 218 (304)
T ss_pred CCcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCC
Confidence 45889 99999996 79999999999988 99988876653221 111 455563221 146899999999
Q ss_pred CEEEEc
Q 023490 180 DLVLLL 185 (281)
Q Consensus 180 DVViLa 185 (281)
|+|..-
T Consensus 219 Dvvy~~ 224 (304)
T PRK00779 219 DVVYTD 224 (304)
T ss_pred CEEEec
Confidence 999985
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.17 Score=49.19 Aligned_cols=80 Identities=16% Similarity=0.040 Sum_probs=48.7
Q ss_pred cEEEEEccCchHHHH-HHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce---ec-CC-C---------c--CCHH-
Q 023490 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---EE-NG-T---------L--GDIY- 173 (281)
Q Consensus 112 ktIGIIG~G~mG~Ai-A~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~---~~-~~-t---------~--~~~~- 173 (281)
|+|.++|.|+||++. ...|... |++|++.+.... ..+.-.+.|.- .. .+ . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~~~~-~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDVNQE-LIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEECCHH-HHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999966 6667666 888877775432 33444444531 11 11 0 0 0112
Q ss_pred --hhcCcCCEEEEccCChhHHHHHHHH
Q 023490 174 --ETISGSDLVLLLISDAAQADNYEKI 198 (281)
Q Consensus 174 --E~l~~ADVViLavP~~~~~~vl~ei 198 (281)
+.+.++|+|++.++......++..+
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l 100 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLI 100 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHH
Confidence 2455889999999976544444433
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.3 Score=50.57 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (281)
.| ++|.|||.|..|-+.|..|+.. |++|+++++... +..+..++.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 58 9999999999999999999998 999999886532 01334556676532111
Q ss_pred ----cCCHHhhcCcCCEEEEccC
Q 023490 169 ----LGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 169 ----~~~~~E~l~~ADVViLavP 187 (281)
..+.+++..+.|.|++++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1244566678999999774
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.95 Score=44.43 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=81.5
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---------HhhcC-c
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---------YETIS-G 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~---------~E~l~-~ 178 (281)
.| .+++|+|+|-+|-+..+.++.. |..-+|+.+.+....+.|++.|.+.- ..+. .++-. .
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcCCC
Confidence 56 8999999999999999999998 88767777777777889999998741 2221 23344 7
Q ss_pred CCEEEEccCChhHHHHHHHHHhcC-CCCcEEEE-e--CCcchhhhhhcccCCCC---CceEEEeccCCCChhhHHhhhhC
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCM-KPNSILGL-S--HGFLLGHLQSIGLDFPK---NIGVIAVCPKGMGPSVRRLYVQG 251 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~m-KpgaILi~-a--aG~~l~~l~~~~~~~~~---~i~VIrvmPntpg~~vr~~y~~g 251 (281)
+|..|-++-... ++..-+... +-|..+++ . +|-.+. +....+.... ..-+=.+-|..-=|.+.++|.+|
T Consensus 255 ~d~~~e~~G~~~---~~~~al~~~~~~G~~v~iGv~~~~~~i~-~~~~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~G 330 (366)
T COG1062 255 ADYAFECVGNVE---VMRQALEATHRGGTSVIIGVAGAGQEIS-TRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAG 330 (366)
T ss_pred CCEEEEccCCHH---HHHHHHHHHhcCCeEEEEecCCCCceee-cChHHeeccceEEEEeecCCccccchhHHHHHHHcC
Confidence 999999888755 444222222 24555432 2 222221 1110011111 11112456777778999999999
Q ss_pred c
Q 023490 252 K 252 (281)
Q Consensus 252 ~ 252 (281)
|
T Consensus 331 k 331 (366)
T COG1062 331 K 331 (366)
T ss_pred C
Confidence 6
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=1.1 Score=39.02 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=32.6
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+++| +++.|.|. |.+|..+++.+.+. |++|++..|...
T Consensus 2 ~~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred CcCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3678 99999995 78999999999998 999988887643
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.18 Score=48.76 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=53.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhh-hhhccCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEcc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~-~~~~~~G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLav 186 (281)
.+|+||| .|..|+.+.+.|... + ...++.......+ +...... .... ..+.++. .+++|++|+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~h----P~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQF----PVGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCC----CceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence 7999999 599999999999874 0 0124433322211 1111000 0122 2233333 37899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|.....++..+..+ .|+.||+.++
T Consensus 75 p~~~s~~~~~~~~~---~g~~VIDlS~ 98 (336)
T PRK08040 75 GREASAAYAEEATN---AGCLVIDSSG 98 (336)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECCh
Confidence 98766666665533 5888887665
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.52 Score=44.85 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=30.6
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
+..|+. .+|.|||+|-+|..+++.|... |. ++.+.|.
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a------GVG~i~lvD~ 59 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL------GIGKFTIADF 59 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh------CCCeEEEEeC
Confidence 567889 9999999999999999999988 65 4555543
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.66 Score=45.36 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=55.3
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhh-cCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYET-ISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~----~~G~~~~~~t~~~~~E~-l~~ADVViL 184 (281)
|+||+||| .|--|..+.+.|... ..+++.++..+..+...... -.|.....-...+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 57999999 789999998888765 13455444322111111111 11111000001233343 556999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC-cch
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG-FLL 216 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG-~~l 216 (281)
|+|.....++..++.. +|..|||.++ |.+
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSadfR~ 106 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSADFRL 106 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCccccc
Confidence 9999887777776653 3445776544 544
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.29 Score=47.67 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=60.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLa 185 (281)
+| +.+||+|+|-+|.==.+..++. |++|++.++...+..+.-+..|...=-....+ .+++.+.-|.++-.
T Consensus 181 pG-~~vgI~GlGGLGh~aVq~AKAM------G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~ 253 (360)
T KOG0023|consen 181 PG-KWVGIVGLGGLGHMAVQYAKAM------GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDT 253 (360)
T ss_pred CC-cEEEEecCcccchHHHHHHHHh------CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCccee
Confidence 78 9999999998888777888888 99998887765443333344663210001112 34566667777777
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
++.- ..+-++..+.+||++-.|++
T Consensus 254 v~~~-a~~~~~~~~~~lk~~Gt~V~ 277 (360)
T KOG0023|consen 254 VSNL-AEHALEPLLGLLKVNGTLVL 277 (360)
T ss_pred eeec-cccchHHHHHHhhcCCEEEE
Confidence 7643 23356666777887665543
|
|
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.41 Score=45.89 Aligned_cols=66 Identities=9% Similarity=0.111 Sum_probs=48.3
Q ss_pred ccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
.++| .+|++||- +++..+++..+..+ |+ ++.+...+.-...+ .....+.. ..+++|+++++|+|
T Consensus 154 ~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~~p~~-~~~~~~~~----~~d~~ea~~~aDvv 221 (310)
T PRK13814 154 HWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSLLPDK-VGNDSIKK----FTELKPSLLNSDVI 221 (310)
T ss_pred CcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCcccCcCc-cccceEEE----EcCHHHHhCCCCEE
Confidence 4789 99999997 69999999999988 98 88777655321111 00112332 46899999999999
Q ss_pred EE
Q 023490 183 LL 184 (281)
Q Consensus 183 iL 184 (281)
..
T Consensus 222 y~ 223 (310)
T PRK13814 222 VT 223 (310)
T ss_pred EE
Confidence 87
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.41 Score=46.94 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=29.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEe
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~ 147 (281)
...|.. .+|.|||+|-+|..+|++|... |. ++.+.|
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~------Gvg~i~lvD 73 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA------GVGTLGIVE 73 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEEC
Confidence 356788 9999999999999999999987 65 455554
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.37 Score=47.00 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=51.4
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHHHHHHCC---ceecCCCcCCHHhhcC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAG---FTEENGTLGDIYETIS 177 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~~A~~~G---~~~~~~t~~~~~E~l~ 177 (281)
..++| .||++||- -++..+++..+..+ |++|.+...+.-. ..+.+++.| +.. ..+++|+++
T Consensus 190 G~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~ 258 (348)
T PLN02342 190 GRLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVK 258 (348)
T ss_pred CCcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhC
Confidence 35889 99999996 47888888888888 9998887665421 223344444 332 468999999
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
++|+|..-+
T Consensus 259 ~aDVvy~~~ 267 (348)
T PLN02342 259 GADVVYTDV 267 (348)
T ss_pred CCCEEEECC
Confidence 999999874
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.64 Score=46.42 Aligned_cols=79 Identities=18% Similarity=0.129 Sum_probs=55.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||-|.+|..=++.|.++ |.+|.+....-........+.| +......+ .++-++++++|+.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~--~~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF--DESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC--ChHHhCCCEEEEE
Confidence 68999 9999999999999988999888 9888776544322232222333 22211112 2355789999999
Q ss_pred ccCChhHHH
Q 023490 185 LISDAAQAD 193 (281)
Q Consensus 185 avP~~~~~~ 193 (281)
+|.+....+
T Consensus 79 at~d~~~n~ 87 (457)
T PRK10637 79 ATDDDAVNQ 87 (457)
T ss_pred CCCCHHHhH
Confidence 999977655
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.76 Score=42.89 Aligned_cols=91 Identities=21% Similarity=0.263 Sum_probs=63.5
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhcC---cCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~----~~G~~~~~~t~~~~~E~l~---~AD 180 (281)
|.| ++|.=||+| |+.++.-+... |.+|. +.+-.++..+.|+ +.|+.. +....+.+|++. +-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~Vt-giD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASVT-GIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCeeE-EecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 789 999999987 45666666666 88865 5555566666665 444442 122345666665 689
Q ss_pred EEEE-----ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViL-----avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|+. |+|+.+. ++.....++|||.++.++
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEe
Confidence 9987 7887554 777889999999988665
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.26 Score=46.29 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=63.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc----------cHHHHHHCCceec----------CCCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----------SFAEARAAGFTEE----------NGTLGD 171 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----------s~~~A~~~G~~~~----------~~t~~~ 171 (281)
.+|+|+|.|.+|++.|..+... |++|..++-..++ .....++.|.--. -.++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999888 9999988764321 1111223332100 023468
Q ss_pred HHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEEEe
Q 023490 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi~a 211 (281)
++|++++|=.|-=|+|..-.. .+|..+-..+.|..||.-+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSS 119 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASS 119 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEecc
Confidence 899999997777788865442 3666666667777777533
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.32 Score=47.71 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=46.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhcCcCCEEEE--cc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLL--LI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~--~G~~~~~~t~~~~~E~l~~ADVViL--av 186 (281)
-+|.|||+|..|.++|+.|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+|+. ++
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~sp~i 78 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIISPGL 78 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEECCCC
Confidence 4799999999999999999999 9999888765432 1122223 36553211 112355778999887 44
Q ss_pred CC
Q 023490 187 SD 188 (281)
Q Consensus 187 P~ 188 (281)
|+
T Consensus 79 ~~ 80 (448)
T PRK03803 79 AL 80 (448)
T ss_pred CC
Confidence 54
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.99 Score=41.47 Aligned_cols=48 Identities=17% Similarity=0.002 Sum_probs=38.0
Q ss_pred hcCCCcccccccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 95 RGGRDLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 95 r~G~W~f~~~~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.+.|... .+.+++| |++-|.| .|-||.++|+.|.+. |++|++..|..
T Consensus 2 ~~~~~~~~-~~~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~~ 50 (306)
T PRK06197 2 KMTKWTAA-DIPDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRNL 50 (306)
T ss_pred CCCCCCcc-ccccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 34556443 2467899 9999999 589999999999998 99988877753
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.27 Score=47.90 Aligned_cols=67 Identities=27% Similarity=0.318 Sum_probs=45.7
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH----HHH-HCCceecCCCcCCHHhhcCcCCEEEE--c
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLL--L 185 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~----~A~-~~G~~~~~~t~~~~~E~l~~ADVViL--a 185 (281)
+|.|||+|..|.++|+.|++. |++|.+.+........ ..+ ..|+....+ .+ .+.++++|+|+. +
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~-~~~~~~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LH-LEDLNNADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEEec--Cc-hHHhccCCEEEECCC
Confidence 478999999999999999999 9999888765432221 112 247654211 23 456788999888 4
Q ss_pred cCC
Q 023490 186 ISD 188 (281)
Q Consensus 186 vP~ 188 (281)
+|+
T Consensus 72 i~~ 74 (433)
T TIGR01087 72 IPP 74 (433)
T ss_pred CCC
Confidence 454
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.57 Score=47.18 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=32.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
.+|+| +++.|.|+||.|...|+.|.+. |.+|+...+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 47999 9999999999999999999998 998876333
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.2 Score=43.30 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=64.5
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc-CCHHh----hc--CcCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYE----TI--SGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~-~~~~E----~l--~~AD 180 (281)
-.| .++.|.|.|.+|...++.++.. |.++++..+...+..+.+++.|+..-+... .+..+ +. ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 357 8999999999999999999998 987655544444456788888874211100 12222 22 2479
Q ss_pred EEEEccCChhH-----------HHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~-----------~~vl~ei~~~mKpgaILi~a 211 (281)
+++-++-.... ...+++.+..++++-.|++.
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 99988875421 23667777788887766543
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.31 Score=46.89 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.7
Q ss_pred EEEEEccCchHHHHHHHHHhh
Q 023490 113 QIGVIGWGSQGPAQAQNLRDS 133 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~ 133 (281)
+|.|||.|-+|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999999888
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.1 Score=43.24 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=60.5
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLa 185 (281)
.| .+|.|.|.|.+|...++.++.. |.+|++..+..++..+.+++.|....-. ..+ +.+.....|+|+-+
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~-~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV-TTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc-CcCHHHHHHhhCCCcEEEEC
Confidence 68 9999999999999999999999 9987766655443345666777632100 111 22333457999988
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+.... .+.+.+..++++..++..
T Consensus 250 ~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 VSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcHH---HHHHHHHhhcCCCEEEEE
Confidence 76432 344555667776655433
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.44 Score=45.50 Aligned_cols=73 Identities=16% Similarity=0.093 Sum_probs=51.2
Q ss_pred cccCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~ 178 (281)
..++| .||++||-+ ++..+++..+..++ |++|.+...+.- .-.+.+++.|...+ ...++++++++
T Consensus 147 g~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 218 (306)
T PLN02527 147 GRLDG-IKVGLVGDLANGRTVRSLAYLLAKYE-----DVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASK 218 (306)
T ss_pred CCcCC-CEEEEECCCCCChhHHHHHHHHHhcC-----CCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCC
Confidence 35899 999999976 58899999877642 788877766432 22233445454321 14689999999
Q ss_pred CCEEEEcc
Q 023490 179 SDLVLLLI 186 (281)
Q Consensus 179 ADVViLav 186 (281)
+|+|....
T Consensus 219 aDvvyt~~ 226 (306)
T PLN02527 219 CDVLYQTR 226 (306)
T ss_pred CCEEEECC
Confidence 99999943
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.76 Score=44.73 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=53.4
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcC--CHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLG--DIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~--~~~E~l~~ADVViLavP 187 (281)
++|||+| .|..|+.+.+.|... .|.++ +.+.....+.-.+...-.+... .... ......+++|+++.+.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~~~~~~~~~~~Divf~~ag 75 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSAGKKYIEFGGKSI--GVPEDAADEFVFSDVDIVFFAAG 75 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEecccccCCccccccCccc--cCccccccccccccCCEEEEeCc
Confidence 7899998 799999999999885 12233 2233222111011011111110 0011 12245678999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....++..+.. +.|+++|+.++
T Consensus 76 ~~~s~~~~p~~~---~~G~~VIdnsS 98 (334)
T COG0136 76 GSVSKEVEPKAA---EAGCVVIDNSS 98 (334)
T ss_pred hHHHHHHHHHHH---HcCCEEEeCCc
Confidence 877666666543 34778877665
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.1 Score=42.32 Aligned_cols=117 Identities=17% Similarity=0.278 Sum_probs=71.0
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC-CcccH----HHH---HHCCceecCCCcCCHHhhcCcCCE
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSF----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~-~~~s~----~~A---~~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
+++|+|.|. |.||+.+.+.+... .++++.-+..+ ++... .+. ...|+.. ..++.....++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 489999997 99999999999876 14665544333 22110 011 1233332 2356778899999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
+|=-+-|....++++..+.+= -.+|+=..||+-++++... .+.+.+++ -++||+.
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~l~-~~a~~v~v-v~a~NfS 127 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEKLR-EAAEKVPV-VIAPNFS 127 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHHHH-HHHhhCCE-EEeccch
Confidence 999888877767776444332 2256668899865544311 12234443 4567764
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=92.62 E-value=1 Score=44.58 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~ 133 (281)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 68999999 99999999998776
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.51 Score=46.02 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=53.3
Q ss_pred cEEEEEc-cCchHHHHHHHHHh-hhhhccCCcE---EEEEecC--CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra-~~~~~~~G~~---Viig~r~--~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+||||| .|..|+.+.+.|.. . .++ +.+.... ..+......+ ....+ ..+.+ .+++.|++|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 6899999 59999999999984 4 444 3333222 1111111101 11211 11333 3588999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|.....++..+.. +.|+.||+.++
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss 100 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTS 100 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECch
Confidence 999876666666543 35888887665
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.9 Score=37.46 Aligned_cols=93 Identities=19% Similarity=0.244 Sum_probs=59.4
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-----cCcCCE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~-----l~~ADV 181 (281)
-+| .+|.|.|.|.+|.++++.++.. |.+|+...+.. ...+.+++.|.... +....+..+. -+..|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRSD-EKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 467 8999999999999999999998 88887666553 33445555553210 0001122222 256899
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
|+-++... ..+...+..|+++..++..
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 99888763 2345556677777666544
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=1.4 Score=37.82 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=32.7
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.++| |++.|+| .|.+|.++++.|.+. |++|++..|...
T Consensus 4 ~~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGAA 42 (239)
T ss_pred CCCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCChH
Confidence 4778 9999999 589999999999988 999888877543
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.2 Score=46.82 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.5
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEe
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGL 147 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~ 147 (281)
.+++| +++.|.|+|++|+..|+.|.+. |.+|+ +.+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------GakvvaVsD 69 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVVTLSD 69 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 67899 9999999999999999999998 99887 444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=1 Score=43.39 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=50.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhh----hccCCcEEE-EEecCCcc------cHHH----HHHCCceec----CC-CcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVK-VGLRKGSR------SFAE----ARAAGFTEE----NG-TLGD 171 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~----~~~~G~~Vi-ig~r~~~~------s~~~----A~~~G~~~~----~~-t~~~ 171 (281)
.+|+|+|+|++|+.+++.|.+.-. ..|..++|+ +.+++... .... ..+.+.... .+ ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999999877311 122234543 34432110 0111 111111000 00 0126
Q ss_pred HHhhc--CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 172 ~~E~l--~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
.+|++ .++|+|+=+++.....+++.+.+ +.|..|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al---~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEAL---KEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHH---hhCCcEE
Confidence 67777 58999999987665555555443 3455444
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.4 Score=39.49 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=33.1
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+++| |++-|.|. |-||.++++.|.+. |++|++.+|..
T Consensus 2 ~~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 2 IGLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 45788 99999995 89999999999998 99998887764
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.33 Score=47.73 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=51.2
Q ss_pred CcEEEEEc-cCchHHHHHH-HHHhhhhhccCCcE---EEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~-~Lra~~~~~~~G~~---Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|+||| .|..|+.+.+ .|... .+. +.......+ -..-... |....-....+ .+.++++|++|+
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~~ss~~s--g~~~~~f~g~~~~v~~~~~-~~~~~~~Divf~ 71 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVFFSTSQA--GGAAPSFGGKEGTLQDAFD-IDALKKLDIIIT 71 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEEecchhh--CCcccccCCCcceEEecCC-hhHhcCCCEEEE
Confidence 57899999 5999999998 55544 443 444322110 0000000 10000000112 244688999999
Q ss_pred ccCChhHHHHHHHHHhcCCCC--cEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPN--SILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpg--aILi~aaG 213 (281)
++|.....++..+... .| ++|++.++
T Consensus 72 a~~~~~s~~~~~~~~~---aG~~~~VID~Ss 99 (369)
T PRK06598 72 CQGGDYTNEVYPKLRA---AGWQGYWIDAAS 99 (369)
T ss_pred CCCHHHHHHHHHHHHh---CCCCeEEEECCh
Confidence 9998766666665533 46 66777665
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.2 Score=42.25 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=59.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t-~~~~~E~l~~ADVViLav 186 (281)
.| .++.|+|.|.+|...++.++.. |.+|++..+.+.+.....++.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 68 8999999999999999999998 98877666554333333345775320 000 001223334579999988
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.... .+++.+..++++..++..
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLILM 274 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEEE
Confidence 7432 445556677887766544
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.47 Score=46.39 Aligned_cols=71 Identities=13% Similarity=0.071 Sum_probs=49.3
Q ss_pred ccCCCcEEEEEccC--------chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcC
Q 023490 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLG 170 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G~~~~~~t~~ 170 (281)
.|+| +||+|+|.| ++..+++..+..+ |++|.+...++- ...+. +++.|...+ ...
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4788 999999853 4557888888887 999888876532 11222 334553321 146
Q ss_pred CHHhhcCcCCEEEEcc
Q 023490 171 DIYETISGSDLVLLLI 186 (281)
Q Consensus 171 ~~~E~l~~ADVViLav 186 (281)
+++|+++++|+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.46 Score=46.62 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=54.2
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHHH---HC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A~---~~- 160 (281)
...|+. .+|.|||+|-+|..++++|... |. ++++.|... .+....++ +.
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 457888 9999999999999999999988 65 445554320 01000111 11
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.+..+ .... .+..+.++++|+|+.++-......++++..
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 11110 0111 124568899999999888766656777544
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.3 Score=46.35 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=41.7
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
+|||||.|..|..+++.++.. |++|++.+....... ..+. .-+.. ...+ +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~l------G~~v~~~d~~~~~p~~~~ad-~~~~~---~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL------GIKVHVLDPDANSPAVQVAD-HVVLA---PFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCEEEEECCCCCCChhHhCc-eeEeC---CCCCHHHHHHHHhhCCEEEe
Confidence 599999999999999999998 999888766532211 1121 11111 1234 5677888998754
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.4 Score=39.09 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=32.1
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| |++-|+| .|.||.++++.|.+. |++|++..|..
T Consensus 6 ~~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4788 9999999 579999999999998 99988887754
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.48 Score=47.24 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=34.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.+|+| ++|+|=|+||.|+-.|+.|.+. |.+|+..++...
T Consensus 203 ~~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 203 DDLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CCcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 35999 9999999999999999999988 999887766543
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.28 Score=47.21 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=42.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC--Cceec--C-CCcC-CHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEE--N-GTLG-DIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~--G~~~~--~-~t~~-~~~E~l~~ADVViLa 185 (281)
+||+|||.|++|+++|..|... +.+-++.+.+.......-.+.+. ..... + .... ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999554 22336777776522211111111 10000 0 0011 125779999999997
Q ss_pred c
Q 023490 186 I 186 (281)
Q Consensus 186 v 186 (281)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 6
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.74 Score=46.33 Aligned_cols=75 Identities=15% Similarity=0.019 Sum_probs=42.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccC--C--cEEEEEecCCcccHHHHHH--CCc-eecCCC--cCCHHhhcCcCCE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--D--IVVKVGLRKGSRSFAEARA--AGF-TEENGT--LGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~--G--~~Viig~r~~~~s~~~A~~--~G~-~~~~~t--~~~~~E~l~~ADV 181 (281)
-+|+|||. |++|.++|-.|.... =+|. + .++++.++..+.....+.+ ... ...... ..+..+.+++||+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~-v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDi 179 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGE-VFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEW 179 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc-cccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCE
Confidence 68999999 999999999876430 0000 1 1555555554332222221 111 000000 1345688999999
Q ss_pred EEEccC
Q 023490 182 VLLLIS 187 (281)
Q Consensus 182 ViLavP 187 (281)
|++..-
T Consensus 180 VVitAG 185 (444)
T PLN00112 180 ALLIGA 185 (444)
T ss_pred EEECCC
Confidence 999543
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.9 Score=40.26 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=32.8
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| +++-|+|. |-||.++++.+.+. |++|++.+|..
T Consensus 3 ~~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~~ 41 (255)
T PRK06057 3 QRLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDIDP 41 (255)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 34788 99999996 89999999999998 99988877653
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.3 Score=50.37 Aligned_cols=73 Identities=22% Similarity=0.222 Sum_probs=48.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcCC---HHhhcCcCC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGD---IYETISGSD 180 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~~---~~E~l~~AD 180 (281)
...... |+|||||-|..|.-+++.++.. |++|++.+...... ...+.+ -+. ..+.| +.++++++|
T Consensus 17 ~~~~~~-k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~~~apa~~~AD~-~~v---~~~~D~~~l~~~a~~~d 85 (577)
T PLN02948 17 VHGVSE-TVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPLEDCPASSVAAR-HVV---GSFDDRAAVREFAKRCD 85 (577)
T ss_pred ccCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhCce-eee---CCCCCHHHHHHHHHHCC
Confidence 445777 9999999999999999999998 99988876653211 111111 111 11234 445678899
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+|......
T Consensus 86 vIt~e~e~ 93 (577)
T PLN02948 86 VLTVEIEH 93 (577)
T ss_pred EEEEecCC
Confidence 98775443
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.78 Score=43.46 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=47.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~---------~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
++|.|||.|.+--+..-..+.. +.+..|.-.+.. +...+.+++ .+.....+...+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~~v~~iD~d-~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGARVHNIDID-PEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT--EEEEEESS-HHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCCeEEEEeCC-HHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999988877666554 224445444444 333333322 11111100111222336789999
Q ss_pred EEccCCh----hHHHHHHHHHhcCCCCcEEEE--eCCcc
Q 023490 183 LLLISDA----AQADNYEKIFSCMKPNSILGL--SHGFL 215 (281)
Q Consensus 183 iLavP~~----~~~~vl~ei~~~mKpgaILi~--aaG~~ 215 (281)
+++.=.. +-.++++.+..+|+||+.|++ ++|..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9976654 344699999999999998874 66654
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.37 Score=46.42 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=52.3
Q ss_pred EEEEEc-cCchHHHHHHHHHhhhhhccCCcE---EEEEecCCcccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEccC
Q 023490 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (281)
Q Consensus 113 tIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~---Viig~r~~~~s~~~A~~~G~~~~~~t~~~~-~E~l~~ADVViLavP 187 (281)
+|+||| .|..|..+.+.|.+. ++. +.+..+......... -.|... ...+. .+.++++|+|++++|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~-~~~~~~---~~~~~~~~~~~~~D~v~~a~g 70 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT-FKGKEL---EVNEAKIESFEGIDIALFSAG 70 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee-eCCeeE---EEEeCChHHhcCCCEEEECCC
Confidence 589999 899999999999876 553 322323211111110 112111 01111 234589999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....++..++. +.|..||+.++
T Consensus 71 ~~~s~~~a~~~~---~~G~~VID~ss 93 (339)
T TIGR01296 71 GSVSKEFAPKAA---KCGAIVIDNTS 93 (339)
T ss_pred HHHHHHHHHHHH---HCCCEEEECCH
Confidence 876666665543 35777776655
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=1.1 Score=39.72 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=31.3
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+.| |++.|+| .|-||.++|+.|.+. |++|++..+..
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~ 41 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSA 41 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4678 9999999 589999999999998 99987765543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.2 Score=39.14 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=30.0
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
+..|.. ++|.|||+|-+|..++++|... |. ++++.|.
T Consensus 6 ~~~L~~-~~VlVvG~GGvGs~va~~Lar~------GVg~i~LvD~ 43 (231)
T cd00755 6 LEKLRN-AHVAVVGLGGVGSWAAEALARS------GVGKLTLIDF 43 (231)
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHc------CCCEEEEECC
Confidence 355788 9999999999999999999988 76 4555543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.8 Score=38.36 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=32.2
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| |++-|.| .|-||.++|+.|.+. |++|++.++..
T Consensus 5 ~~~~-k~~lVtG~s~gIG~~ia~~l~~~------G~~v~~~~r~~ 42 (254)
T PRK06114 5 DLDG-QVAFVTGAGSGIGQRIAIGLAQA------GADVALFDLRT 42 (254)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4788 9999999 669999999999998 99998887764
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.1 Score=41.92 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=57.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC----CHHhhcC------c
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG----DIYETIS------G 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~----~~~E~l~------~ 178 (281)
+| .+|.|+|.|.+|...++.++.. |.+|++.++.. +..+.+++.|....-.... +..+.+. .
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~~~-~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g 237 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDIDP-EKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARG 237 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCC
Confidence 57 9999999999999999999998 98876665543 3456777777632000001 1222222 2
Q ss_pred CC----EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 179 SD----LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 179 AD----VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.| +|+-++.... .++..++.++++..+++.
T Consensus 238 ~d~~~d~v~d~~g~~~---~~~~~~~~l~~~G~iv~~ 271 (349)
T TIGR03201 238 LRSTGWKIFECSGSKP---GQESALSLLSHGGTLVVV 271 (349)
T ss_pred CCCCcCEEEECCCChH---HHHHHHHHHhcCCeEEEE
Confidence 33 7777776533 344445667777766544
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.32 Score=42.49 Aligned_cols=38 Identities=21% Similarity=0.180 Sum_probs=32.9
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+++| +++.|+| .|.+|.++++.|.+. |++|++..|...
T Consensus 2 ~~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNEE 40 (251)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 4678 9999999 589999999999998 999888887753
|
|
| >COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.1 Score=43.24 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=48.6
Q ss_pred cccCCCcEEEEEc---cCchHHHHHHHHHhhhhhccCCcEEEEEecCC----cccHHHHHHCC-ceecCCCcCCHHhhcC
Q 023490 106 DAFNGINQIGVIG---WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG-FTEENGTLGDIYETIS 177 (281)
Q Consensus 106 ~~l~G~ktIGIIG---~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~----~~s~~~A~~~G-~~~~~~t~~~~~E~l~ 177 (281)
..+.| .+|+|+| +|....+.++.|..+ |.+|.+..+.. ..-.+...+.| ... .....+|+++
T Consensus 154 G~~~g-l~iaivGDlkhsRva~S~~~~L~~~------ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~---~~~~~e~~i~ 223 (316)
T COG0540 154 GRLDG-LKIAIVGDLKHSRVAHSNIQALKRF------GAEVYLVSPETLLPPEYILEELEEKGGVVV---EHDSDEEVIE 223 (316)
T ss_pred CCcCC-cEEEEEccccchHHHHHHHHHHHHc------CCEEEEECchHhCCchhHHHHHhhcCceEE---Eecchhhhhc
Confidence 45899 9999999 899999999999999 98876654431 11113333433 221 1334556999
Q ss_pred cCCEEEEc
Q 023490 178 GSDLVLLL 185 (281)
Q Consensus 178 ~ADVViLa 185 (281)
++||+++.
T Consensus 224 ~~DVl~~l 231 (316)
T COG0540 224 EADVLYML 231 (316)
T ss_pred cCCEEEee
Confidence 99999873
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.66 Score=44.98 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=50.3
Q ss_pred ccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCcC
Q 023490 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 107 ~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~A 179 (281)
.++| .||++||- +++..+++..+...+ |++|.+..+++- ...+.+++.|...+ ...+++|+++++
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5899 99999997 588999888766442 888887766532 22233445453321 146899999999
Q ss_pred CEEEEc
Q 023490 180 DLVLLL 185 (281)
Q Consensus 180 DVViLa 185 (281)
|+|..-
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.5 Score=45.54 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=49.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhh--hccCCcEEE-EEecCCc----c--cHHHH---HHCC-ceecCCCcCCHHhhc-C
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVK-VGLRKGS----R--SFAEA---RAAG-FTEENGTLGDIYETI-S 177 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~--~~~~G~~Vi-ig~r~~~----~--s~~~A---~~~G-~~~~~~t~~~~~E~l-~ 177 (281)
++|+|||+|++|+.+++.|.+.-. ..+.+++|+ +.+++.. . ..+.. .+.| +........++++++ .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 489999999999999999877300 112355543 4444321 0 01110 1112 110000001455553 4
Q ss_pred cCCEEEEccCChhH-HHHHHHHHhcCCCCcEEE
Q 023490 178 GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 178 ~ADVViLavP~~~~-~~vl~ei~~~mKpgaILi 209 (281)
+.|+|+=++|.... ...+.-+.+.|+.|..|+
T Consensus 81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVV 113 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVV 113 (326)
T ss_pred CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEE
Confidence 68999999974321 112333334455666554
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.4 Score=45.03 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=66.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
+.+||||.|..|++...+...- ++.. +. ..+++.+.++. ++.. ..+.+...+-.++++.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~c--s~-i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVAC--SA-ISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heee--hh-hhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 6899999999999965554443 4432 11 11233333333 2222 2244445555677777777
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcch-hhhhhcccCCCCCceEEEeccCCCChhhHHhhh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l-~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~ 249 (281)
+.....+. .-..-.||++|+-++|++- +.+...+ +.+---..+||++.=+.+-.--.
T Consensus 77 d~~~s~va--a~~~~rpg~iv~HcSga~~~~il~~~g---r~g~~~asiHP~f~Fsgl~edl~ 134 (289)
T COG5495 77 DALYSGVA--ATSLNRPGTIVAHCSGANGSGILAPLG---RQGCIPASIHPAFSFSGLDEDLS 134 (289)
T ss_pred HHHHHHHH--HhcccCCCeEEEEccCCCchhhhhhhh---hcCCcceeecccccccCCHHHHH
Confidence 75322222 2234578999999999873 3333211 11222357899988776654444
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.4 Score=39.47 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=45.0
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcC-------
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETIS------- 177 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~------- 177 (281)
++ +++.|.| .|-+|.++++.|.+. |++|++..|..++ .+...+.++..-.....+ .+++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 46 8999999 589999999999988 9998877776432 222222332211011223 233343
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
..|+|+.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6799998764
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.78 Score=39.96 Aligned_cols=74 Identities=20% Similarity=0.150 Sum_probs=46.8
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---HhhcC---cC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS---GS 179 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~---~E~l~---~A 179 (281)
.++| +++.|.|. |.+|..+++.+.+. |++|++..|..++..+.....+.........+. +++++ ..
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 4788 99999997 79999999999998 999888877643322233332322100112232 23333 47
Q ss_pred CEEEEccC
Q 023490 180 DLVLLLIS 187 (281)
Q Consensus 180 DVViLavP 187 (281)
|+||-+..
T Consensus 79 d~vi~~ag 86 (245)
T PRK07060 79 DGLVNCAG 86 (245)
T ss_pred CEEEECCC
Confidence 98887663
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.69 Score=46.39 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=50.8
Q ss_pred cCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 023490 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~AD 180 (281)
++| +||++||- +++..+++..+..++ |++|.+...+.- .-.+.+.+.|...+ ...+++|+++++|
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 889 99999997 589999999876642 899888766542 11233444453321 1468999999999
Q ss_pred EEEEcc
Q 023490 181 LVLLLI 186 (281)
Q Consensus 181 VViLav 186 (281)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.65 Score=47.49 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=50.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~~t 168 (281)
.+ ++|.|||.|..|.+.|..|++. |++|.+.++... +..+..++.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 57 9999999999999999999998 999988865431 11234556675432111
Q ss_pred c----CCHHhhcCcCCEEEEccC
Q 023490 169 L----GDIYETISGSDLVLLLIS 187 (281)
Q Consensus 169 ~----~~~~E~l~~ADVViLavP 187 (281)
. .+.+++-.+.|.|+|++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 134455567999999886
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.34 Score=46.42 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=57.0
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCChh-HHHHHHHHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceE
Q 023490 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 158 ~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~-~~~vl~ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~V 232 (281)
++.|+.. ..|-.|+++++|++|+-+|-.. +.+++++++++++.|++|.-.+-+.. ..++. +. ++|+.|
T Consensus 125 EdaGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~--l~-R~DvgI 197 (342)
T PRK00961 125 EDLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD--LG-RDDLNV 197 (342)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH--hC-cccCCe
Confidence 4577775 4577799999999999999866 56799999999999999987666552 22332 22 678999
Q ss_pred EEeccC
Q 023490 233 IAVCPK 238 (281)
Q Consensus 233 IrvmPn 238 (281)
...||-
T Consensus 198 sS~HPa 203 (342)
T PRK00961 198 TSYHPG 203 (342)
T ss_pred eccCCC
Confidence 988884
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.64 Score=44.11 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=31.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
+..|.. .+|.|||+|-+|..+|++|... |. ++.+.|..
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D~d 52 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHDTK 52 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEcCC
Confidence 456778 9999999999999999999988 77 56666643
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=1.3 Score=41.23 Aligned_cols=93 Identities=19% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHh---hcC--cCC-E
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE---TIS--GSD-L 181 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E---~l~--~AD-V 181 (281)
.| .++.|.|.|.+|...++.++.. |.++++......+..+.+++.|.... +....+.++ ... ..| +
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 57 8999999999999999999998 98743433333334556677775310 000011122 222 356 7
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
|+-++... ..+.+.+..++++..+++.
T Consensus 233 v~d~~G~~---~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILETAGVP---QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 77777653 2456666777887766544
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.53 Score=46.34 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=44.7
Q ss_pred EEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
+|-|||.|..|-+ +|+.|++. |++|.+.+.......+..++.|+.... ....+.++++|+|++
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~~---g~~~~~~~~~d~vV~ 64 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIYI---GHSAENLDDADVVVV 64 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEeC---CCCHHHCCCCCEEEE
Confidence 3789999999998 99999999 999988876543322334456766421 122355778999987
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.8 Score=37.72 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=32.0
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| +++-|+| .|.||.++++.|.+. |++|++..+..
T Consensus 3 ~~~~~-~~vlItGa~g~iG~~la~~l~~~------G~~v~~~~r~~ 41 (250)
T PRK12939 3 SNLAG-KRALVTGAARGLGAAFAEALAEA------GATVAFNDGLA 41 (250)
T ss_pred CCCCC-CEEEEeCCCChHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 34778 9999999 589999999999998 99987776653
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.41 Score=45.95 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=57.0
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCChh-HHHHHHHHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceE
Q 023490 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGV 232 (281)
Q Consensus 158 ~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~-~~~vl~ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~V 232 (281)
++.|+.. ..|-.|+++++|++|+-+|-.. +.++++++.++++.|++|.-.+-+.. ..++. +. ++|+.|
T Consensus 123 EdaGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~--l~-R~DvgV 195 (340)
T TIGR01723 123 EDLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED--LG-REDLNV 195 (340)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh--hC-cccCCe
Confidence 4577775 4577799999999999999866 57799999999999999987666553 22332 22 578999
Q ss_pred EEeccC
Q 023490 233 IAVCPK 238 (281)
Q Consensus 233 IrvmPn 238 (281)
...||-
T Consensus 196 sS~HPa 201 (340)
T TIGR01723 196 TSYHPG 201 (340)
T ss_pred eccCCC
Confidence 988884
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.46 E-value=1.8 Score=40.01 Aligned_cols=93 Identities=20% Similarity=0.149 Sum_probs=59.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCH---HhhcC--cCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDI---YETIS--GSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~---~E~l~--~AD 180 (281)
..| .+|.|+|.|.+|...++.++.. |.+ |++.++. .+..+.+++.|.... +....+. .+... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~~~~-~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGVDPS-PERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 358 9999999999999999999998 987 7665544 334566777775320 0000111 12222 589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|+-++.... .+.+.+..++++..+++.
T Consensus 234 ~vid~~g~~~---~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 234 VAIECSGNTA---ARRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEEECCCCHH---HHHHHHHHhhcCCEEEEE
Confidence 9998887543 334445667777665543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.8 Score=38.73 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=31.7
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
++.| +++-|.|. |-||.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 2 DLRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 4678 99999994 79999999999998 99988887753
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.85 Score=44.22 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=50.3
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhhcC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETIS 177 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G~~~~~~t~~~~~E~l~ 177 (281)
.++| .+|++||- .++..+++..+..+ |++|.+...+.- .-.+. ++..|...+ ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 5889 99999996 58888998888887 999888766531 11222 223453211 1468999999
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999933
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.81 Score=45.44 Aligned_cols=74 Identities=24% Similarity=0.236 Sum_probs=51.5
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--------------------ccHHHHHHCCceecC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEEN 166 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--------------------~s~~~A~~~G~~~~~ 166 (281)
.-.| ++|.|||.|..|-+.|..|+.. |++|+++++... ...+...+.|+...-
T Consensus 140 ~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 140 KRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 3467 9999999999999999999998 999988876421 012335566755321
Q ss_pred CCcC----CHHhhcCcCCEEEEccC
Q 023490 167 GTLG----DIYETISGSDLVLLLIS 187 (281)
Q Consensus 167 ~t~~----~~~E~l~~ADVViLavP 187 (281)
++.. +.+++....|.|++++-
T Consensus 213 ~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 213 NVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred CCEECCcCCHHHHHhhCCEEEEecC
Confidence 2211 34455568999999863
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.31 E-value=2.2 Score=40.21 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=59.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhcC--cCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETIS--GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~----E~l~--~AD 180 (281)
+| .+|.|+|.|.+|...++.++.. |.+ |+..++. .+..+.+++.|.... +....+.. +... ..|
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~-~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDID-DRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 57 8999999999999999999998 985 6555444 345667778875310 10011222 2222 479
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|+=++... ..+++.+..++++-.+++.
T Consensus 248 ~vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 999887643 2345556677887766544
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=91.23 E-value=2 Score=38.08 Aligned_cols=37 Identities=22% Similarity=0.046 Sum_probs=32.1
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| |++-|.| .|.||.++|+.|.+. |++|++.++..
T Consensus 7 ~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~~ 44 (255)
T PRK05717 7 GHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLDR 44 (255)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCCH
Confidence 5789 9999999 589999999999988 99988776653
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.87 Score=44.60 Aligned_cols=66 Identities=29% Similarity=0.308 Sum_probs=44.6
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH----HHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~----~A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
+|.|||.|..|.+.|+.|.+. |++|.+.++....... ..++.|+...-+...+ ..+.+.+.|+|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEE
Confidence 689999999999999999999 9999888865432111 2335576542111111 1146778999988
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=2.1 Score=37.32 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=31.2
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
.++| +++.|.| .|.+|.++++.|.+. |++|++..|.
T Consensus 3 ~~~~-k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~ 39 (249)
T PRK06500 3 RLQG-KTALITGGTSGIGLETARQFLAE------GARVAITGRD 39 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCC
Confidence 4678 9999999 589999999999998 9998777665
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.72 Score=40.83 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| |++-|.|. |-||.++++.|.+. |++|++..|..
T Consensus 5 ~~~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 43 (253)
T PRK05867 5 FDLHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARHL 43 (253)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCH
Confidence 45789 99999996 79999999999998 99988877753
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.92 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEEccCchHHHHHHHHHhh
Q 023490 113 QIGVIGWGSQGPAQAQNLRDS 133 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~ 133 (281)
+|||+|+|.||+.+.+.|...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~ 21 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES 21 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc
Confidence 589999999999999998764
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.4 Score=38.28 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=32.3
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
..++| |++-|.|. |-||.++|+.|.+. |++|++..|.
T Consensus 2 ~~l~~-k~vlItGas~gIG~aia~~l~~~------G~~vi~~~r~ 39 (272)
T PRK08589 2 KRLEN-KVAVITGASTGIGQASAIALAQE------GAYVLAVDIA 39 (272)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 35788 99999995 78999999999998 9999888776
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.64 Score=40.36 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=31.5
Q ss_pred cCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 108 l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+.| +++.|+| .|.+|..+++.|.+. |++|++..|...
T Consensus 4 ~~~-~~ilItGatg~iG~~la~~l~~~------g~~V~~~~r~~~ 41 (237)
T PRK07326 4 LKG-KVALITGGSKGIGFAIAEALLAE------GYKVAITARDQK 41 (237)
T ss_pred CCC-CEEEEECCCCcHHHHHHHHHHHC------CCEEEEeeCCHH
Confidence 567 8999999 589999999999988 999888877643
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=2 Score=37.62 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| |++-|.|. |-||.++++.|.+. |++|++..|..
T Consensus 2 ~~~~~-k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~~ 40 (250)
T PRK07774 2 GRFDD-KVAIVTGAAGGIGQAYAEALARE------GASVVVADINA 40 (250)
T ss_pred cccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 35788 99999995 99999999999998 99988887763
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.55 Score=48.76 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=48.9
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH--------CC------ceecCCCcC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AG------FTEENGTLG 170 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~--------~G------~~~~~~t~~ 170 (281)
....| ++|.|.| .|.||..+++.|.+. |++|++..|...+......+ .| +....+.+.
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 34567 9999999 599999999999998 99998888764432221111 11 111011233
Q ss_pred C---HHhhcCcCCEEEEccC
Q 023490 171 D---IYETISGSDLVLLLIS 187 (281)
Q Consensus 171 ~---~~E~l~~ADVViLavP 187 (281)
+ +++++.++|+||.+.-
T Consensus 149 D~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CHHHHHHHhcCCCEEEEccc
Confidence 3 4456889999998764
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.89 Score=41.58 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=46.2
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH--HHHH-C----CceecCCCc---CCHHhhcC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA--EARA-A----GFTEENGTL---GDIYETIS 177 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~--~A~~-~----G~~~~~~t~---~~~~E~l~ 177 (281)
.| |+|.|.| .|-+|..+++.|.+. |++|++..|....... .... . .+..-.+.. ..++++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 46 8999999 799999999999999 9998877765432111 1110 1 111000111 23567788
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
++|+||-+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 9999887654
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=91.09 E-value=2.2 Score=37.95 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=58.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh--cCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~--l~~ADVViL 184 (281)
-+| .+|.|.|.|.+|.+..+.+++. |.+ |++..+.. +..+.+++.|... ......++. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~~~~~~-~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVGVDPDA-ARRELAEALGPAD--PVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEECCCH-HHHHHHHHcCCCc--cccccchhhhcCCCCCEEEE
Confidence 367 8999999999999999999998 887 65554443 3455677777211 011111111 235899998
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
++.... .+.+....++++..++..
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLV 189 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEE
Confidence 776533 455667778887766544
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.09 E-value=2.2 Score=42.81 Aligned_cols=98 Identities=22% Similarity=0.176 Sum_probs=66.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH--HHHC-Cceec-----------------CCCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARAA-GFTEE-----------------NGTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~--A~~~-G~~~~-----------------~~t~~ 170 (281)
|.+|-|+|.|..+--+|..++.. ...+|-+..|...++... +.+. +...+ +....
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~-----~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~ 75 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH-----GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQ 75 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc-----cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhc
Confidence 57899999999999999999976 123566677765443322 2222 11111 12245
Q ss_pred CHHhhcCcCCEEEEccCChhHHHHHH----HHHhcCCCCcEEEEeCCcc
Q 023490 171 DIYETISGSDLVLLLISDAAQADNYE----KIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~vl~----ei~~~mKpgaILi~aaG~~ 215 (281)
+.+++..+=|.+|||||-.+..++++ +.+..+| ++|.++..|.
T Consensus 76 ~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk--~iVLvSPtfG 122 (429)
T PF10100_consen 76 DYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVK--SIVLVSPTFG 122 (429)
T ss_pred CHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCC--EEEEECcccc
Confidence 67889999999999999999888876 4555554 3666665544
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.67 Score=45.73 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=52.8
Q ss_pred cccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHh
Q 023490 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E 174 (281)
..++| ++|+|.|+ .+-...+++.|++. | .+|.+++..-.. .......... ..+++|
T Consensus 316 ~~~~~-~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~------gg~~v~~~DP~~~~-~~~~~~~~~~-----~~~~~~ 382 (415)
T PRK11064 316 KRASE-VKIACFGLAFKPNIDDLRESPAMEIAELIAQW------HSGETLVVEPNIHQ-LPKKLDGLVT-----LVSLDE 382 (415)
T ss_pred cCcCC-CEEEEEeeEECCCCcchhhChHHHHHHHHHhc------CCcEEEEECCCCCc-hhhhccCcee-----eCCHHH
Confidence 34789 99999997 44667888888887 7 888888765321 1111111122 357889
Q ss_pred hcCcCCEEEEccCChhHHH
Q 023490 175 TISGSDLVLLLISDAAQAD 193 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~~ 193 (281)
++++||+|+++++-.+..+
T Consensus 383 ~~~~ad~vvi~t~~~~~~~ 401 (415)
T PRK11064 383 ALATADVLVMLVDHSQFKA 401 (415)
T ss_pred HHhCCCEEEECCCCHHhcc
Confidence 9999999999999877654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=2.7 Score=37.31 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=34.6
Q ss_pred ccccccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 101 FKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 101 f~~~~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
|......++| +++-|.| .|.+|.++++.|.+. |++|++..+.
T Consensus 6 ~~~~~~~l~~-k~vlItGas~gIG~~ia~~l~~~------G~~v~~~~~~ 48 (258)
T PRK06935 6 FSMDFFSLDG-KVAIVTGGNTGLGQGYAVALAKA------GADIIITTHG 48 (258)
T ss_pred hccccccCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 4434456899 9999999 579999999999998 9998887765
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=2.4 Score=36.44 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=31.5
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+++. |+|.|+| .|.+|.++++.|.+. |++|++..+.+.
T Consensus 3 ~~~~-~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~ 41 (249)
T PRK12825 3 SLMG-RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDE 41 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence 4566 8999998 699999999999999 999877666543
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.96 E-value=2.1 Score=41.05 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=57.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcC-----cCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETIS-----GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l~-----~AD 180 (281)
+| .++.|+|.|.+|...++.++.. |..+++..+...+..+.+++.|....-... .+..+.+. ..|
T Consensus 193 ~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 58 9999999999999999999998 985444443333445677888863200000 01222221 479
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCC-cEEEE
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpg-aILi~ 210 (281)
+|+=++-... .+.+.+..++++ -.+++
T Consensus 266 ~vid~~G~~~---~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFECVGDTG---IATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEECCCChH---HHHHHHHhhccCCCEEEE
Confidence 9988877432 345555667676 55543
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.96 E-value=0.89 Score=47.33 Aligned_cols=74 Identities=24% Similarity=0.201 Sum_probs=51.2
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc--------------------cHHHHHHCCceecCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------------SFAEARAAGFTEENG 167 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~--------------------s~~~A~~~G~~~~~~ 167 (281)
-.| ++|.|||.|..|-+.|..|... |++|++.++.... ..+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 367 9999999999999999999998 9999888765310 123345666553212
Q ss_pred Cc----CCHHhhcCcCCEEEEccCC
Q 023490 168 TL----GDIYETISGSDLVLLLISD 188 (281)
Q Consensus 168 t~----~~~~E~l~~ADVViLavP~ 188 (281)
+. .+.++...+.|.|+|++--
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVGA 288 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcCC
Confidence 21 1344555579999997754
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.6 Score=40.42 Aligned_cols=92 Identities=22% Similarity=0.249 Sum_probs=59.9
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
-+| .++.|.|.|.+|.++++.+++. |.+|++..+.. +..+.+.+.|....-. ..+ ..+.-...|+|+-
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~~-~~~~~~~~~g~~~vi~-~~~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRSP-SKKEDALKLGADEFIA-TKDPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCCH-HHHHHHHHcCCcEEec-CcchhhhhhccCCceEEEE
Confidence 357 8999999999999999999998 99877666553 3345566666431000 011 1222456899998
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+++... .+.+.+..++++..+++.
T Consensus 239 ~~g~~~---~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 239 TVSASH---DLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCCCcc---hHHHHHHHhcCCCEEEEE
Confidence 888642 345556677776655543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.69 Score=43.53 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=58.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
-++++|||--.==-.+++.|.+. |++|.++.-+... . .-.|+.. ....++.++++|+|++++|-..
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~------g~~v~~~g~~~~~---~-~~~~~~~----~~~~~~~~~~~~~~i~p~~~~~ 66 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEEL------DAKISLIGFDQLE---D-GFTGAVK----CELLELDLTTLDVVILPVPGTS 66 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHC------CCEEEEEeccccc---c-cccccee----ecchhhhhccCCEEEECCcccc
Confidence 08999999887778889999988 9988665432110 0 0124443 3456667999999999999432
Q ss_pred HH----------H-HH-HHHHhcCCCCcEEEEeCCcch
Q 023490 191 QA----------D-NY-EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 ~~----------~-vl-~ei~~~mKpgaILi~aaG~~l 216 (281)
.. + .+ ++++..++++++ +..|+.-
T Consensus 67 ~~~~i~~~~~~~~~~l~~~~l~~~~~~~~--~~~G~~~ 102 (287)
T TIGR02853 67 HDGKVATVFSNEKVVLTPELLESTKGHCT--IYVGISN 102 (287)
T ss_pred CCceEecccccCCccccHHHHHhcCCCCE--EEEecCC
Confidence 21 1 24 378888887655 4455553
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=2.1 Score=39.87 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=33.7
Q ss_pred ccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 105 ~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.+++| |++-|.| .+-||.++|+.|.+. |++|++..|..
T Consensus 9 ~~~l~g-k~~lITGas~GIG~~~a~~La~~------G~~Vil~~R~~ 48 (313)
T PRK05854 9 VPDLSG-KRAVVTGASDGLGLGLARRLAAA------GAEVILPVRNR 48 (313)
T ss_pred CcccCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 457899 9999999 568999999999998 99998887764
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=3 Score=36.46 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=31.7
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+.| +++-|.|. |-+|.++++.|.+. |++|++..|..
T Consensus 3 ~~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4678 99999995 89999999999988 99988777653
|
|
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.76 Score=43.82 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=48.8
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCccc----HH----HHHHCCceecCCCcCCHHhhc
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FA----EARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s----~~----~A~~~G~~~~~~t~~~~~E~l 176 (281)
..++| .||++||-+ ++..+++..+..+ |++|.+...+.-.. .+ .+++.|...+ ...+ .+++
T Consensus 143 g~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~ 212 (302)
T PRK14805 143 GDVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAI 212 (302)
T ss_pred CCcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHH
Confidence 35889 999999974 7788999998888 99988887654211 11 2333454321 1235 4679
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|..-+
T Consensus 213 ~~aDvvy~~~ 222 (302)
T PRK14805 213 EGHDAIYTDT 222 (302)
T ss_pred CCCCEEEeec
Confidence 9999999955
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.89 E-value=2.3 Score=37.95 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=31.3
Q ss_pred cCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 108 l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
++| +++-|+|. |-||.++++.|.+. |++|++.+|..
T Consensus 3 ~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKG-EVVLVTGGASGLGRAIVDRFVAE------GARVAVLDKSA 39 (262)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 678 99999994 68999999999998 99998887754
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.3 Score=41.60 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=30.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
+..|++ ++|.|||+|-+|..+|.+|... |. ++.+.+.
T Consensus 25 ~~kL~~-s~VlVvG~GGVGs~vae~Lar~------GVg~itLiD~ 62 (268)
T PRK15116 25 LQLFAD-AHICVVGIGGVGSWAAEALART------GIGAITLIDM 62 (268)
T ss_pred HHHhcC-CCEEEECcCHHHHHHHHHHHHc------CCCEEEEEeC
Confidence 467889 9999999999999999999988 74 5555553
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.86 E-value=2.2 Score=37.67 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=32.0
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+++| |++-|.| .|-||.++++.|.+. |++|++..|..
T Consensus 3 ~~~~-k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~ 40 (254)
T PRK07478 3 RLNG-KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQ 40 (254)
T ss_pred CCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 5788 9999999 578999999999998 99988887764
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.35 Score=48.12 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=31.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r 148 (281)
.+++| ++|.|.|+|++|+.+|+.|.+. |.+|+ +.+.
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVVaVsD~ 238 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIVAVSDI 238 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEECC
Confidence 47999 9999999999999999999998 99887 4443
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=2.1 Score=37.57 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=32.8
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| +++-|.|. |.+|.++++.|.+. |++|++..|..
T Consensus 3 ~~~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 3 SNLNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred ccCCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 34778 99999995 99999999999998 99988777764
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.83 E-value=2.3 Score=37.04 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=31.3
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| +++-|+| .|-+|.++|+.|.+. |++|++..++.
T Consensus 2 ~~~~-~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSN-KVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGS 39 (245)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCC
Confidence 4678 9999999 589999999999998 99887766553
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.1 Score=43.43 Aligned_cols=71 Identities=13% Similarity=-0.013 Sum_probs=48.5
Q ss_pred cc-CCCcEEEEEccC-------chHHHHHHHHHhhhhhccCCcEEEEEec-CCcc----cHH----HHHHCCceecCCCc
Q 023490 107 AF-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSR----SFA----EARAAGFTEENGTL 169 (281)
Q Consensus 107 ~l-~G~ktIGIIG~G-------~mG~AiA~~Lra~~~~~~~G~~Viig~r-~~~~----s~~----~A~~~G~~~~~~t~ 169 (281)
.+ +| .||+|++.| ++..+++..+..+ |++|.+... +.-. -.+ .+.+.|...+ ..
T Consensus 165 ~~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~ 235 (335)
T PRK04523 165 TTLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VS 235 (335)
T ss_pred CccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 47 78 899776543 6888998888888 999888876 4211 122 2234453221 14
Q ss_pred CCHHhhcCcCCEEEEcc
Q 023490 170 GDIYETISGSDLVLLLI 186 (281)
Q Consensus 170 ~~~~E~l~~ADVViLav 186 (281)
.+++|+++++|+|..-.
T Consensus 236 ~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 236 HDIDSAYAGADVVYAKS 252 (335)
T ss_pred cCHHHHhCCCCEEEece
Confidence 68999999999999854
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=2.1 Score=37.84 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=32.5
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.++| |++.|.| .|.+|.++++.|.+. |++|++..|..
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRDP 44 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 5789 9999999 589999999999998 99988877653
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=0.87 Score=45.39 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=42.4
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
-.| ++|+|+|+|.-|.+.++.|+ . |.+|++.+++... .....+. ..... .....+.+.+.|+|++
T Consensus 4 ~~~-~~v~v~G~G~sG~a~~~~L~-~------g~~v~v~D~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~d~vV~ 69 (454)
T PRK01368 4 HTK-QKIGVFGLGKTGISVYEELQ-N------KYDVIVYDDLKAN-RDIFEELYSKNAI---AALSDSRWQNLDKIVL 69 (454)
T ss_pred CCC-CEEEEEeecHHHHHHHHHHh-C------CCEEEEECCCCCc-hHHHHhhhcCcee---ccCChhHhhCCCEEEE
Confidence 357 99999999999999999998 6 8999888854322 1111111 11110 1112355778999888
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=2.7 Score=37.33 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.1
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| |++-|+| .|-||.++|+.|.+. |++|++..+..
T Consensus 3 ~~~~~-k~~lItGa~~gIG~~ia~~l~~~------G~~vvi~~~~~ 41 (261)
T PRK08936 3 SDLEG-KVVVITGGSTGLGRAMAVRFGKE------KAKVVINYRSD 41 (261)
T ss_pred cCCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCC
Confidence 35789 9999999 678999999999998 99887776643
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.1 Score=39.12 Aligned_cols=88 Identities=17% Similarity=0.108 Sum_probs=59.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
+| .++.|.|.|.+|.++++.++.. |.+|++..+.. +..+.+++.|.... ....+..-+..|+++.+.+.
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~~---~~~~~~~~~~vD~vi~~~~~ 235 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADWA---GDSDDLPPEPLDAAIIFAPV 235 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcEE---eccCccCCCcccEEEEcCCc
Confidence 56 8999999999999999999988 98877666554 34455667775320 11111112457888887664
Q ss_pred hhHHHHHHHHHhcCCCCcEEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~ 210 (281)
. ..+++....++++..+++
T Consensus 236 ~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 236 G---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred H---HHHHHHHHHhhcCCEEEE
Confidence 3 356677788888776654
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.6 Score=38.36 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..+++ +++.|+| .|.+|..+++.|.+. |++|++..|..
T Consensus 7 ~~~~~-~~vlItGa~g~iG~~~a~~L~~~------g~~V~~~~r~~ 45 (264)
T PRK12829 7 KPLDG-LRVLVTGGASGIGRAIAEAFAEA------GARVHVCDVSE 45 (264)
T ss_pred hccCC-CEEEEeCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 45789 9999999 689999999999998 99988777753
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=90.33 E-value=2.4 Score=40.23 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=57.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc-----CcCCE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l-----~~ADV 181 (281)
.| .+|.|+|.|.+|...++.++.. |. +|++.++. ++..+.+++.|.... +....+..+.+ ...|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~~~~-~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAVDLN-EDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEEcCC-HHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 57 8999999999999999999998 98 46555544 344667778886321 00001211211 14799
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
|+-++.... .+...+..++++..++.
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTVT 288 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEEE
Confidence 998886432 34444556777665543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=2.1 Score=38.92 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=33.4
Q ss_pred ccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 105 ~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|.+++| |++-|.| .|-||.++|+.|.+. |++|++.++..
T Consensus 1 ~~~~~~-k~vlVTGas~gIG~ala~~La~~------G~~Vv~~~r~~ 40 (275)
T PRK05876 1 MDGFPG-RGAVITGGASGIGLATGTEFARR------GARVVLGDVDK 40 (275)
T ss_pred CCCcCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 356889 9999998 779999999999998 99988887663
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.71 Score=45.38 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=49.9
Q ss_pred cEEEEEcc-CchHHHHHHHHH-hhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCH-H-hhcCcCCEEEEcc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lr-a~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~-~-E~l~~ADVViLav 186 (281)
++|||||+ |..|+.+.+.|. .. .|-. ++.......+ ... ...+..+.....+. + +.+++.|+++.+.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~----~fp~~~~~~~ss~~s--~g~--~~~f~~~~~~v~~~~~~~~~~~vDivffa~ 72 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER----DFDAIRPVFFSTSQL--GQA--APSFGGTTGTLQDAFDIDALKALDIIITCQ 72 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC----CCccccEEEEEchhh--CCC--cCCCCCCcceEEcCcccccccCCCEEEEcC
Confidence 58999995 999999999888 44 1121 2333322111 000 01110000011122 2 3678999999999
Q ss_pred CChhHHHHHHHHHhcCCCC--cEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPN--SILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpg--aILi~aaG 213 (281)
+.....++..+.. +.| +++|+.++
T Consensus 73 g~~~s~~~~p~~~---~aG~~~~VIDnSS 98 (366)
T TIGR01745 73 GGDYTNEIYPKLR---ESGWQGYWIDAAS 98 (366)
T ss_pred CHHHHHHHHHHHH---hCCCCeEEEECCh
Confidence 8765444544432 357 67777665
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.44 Score=43.19 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=43.7
Q ss_pred EEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhc------Cc-CCE
Q 023490 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETI------SG-SDL 181 (281)
Q Consensus 113 tIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l------~~-ADV 181 (281)
+|.|+|. |.+|+.+++.|.+. |++|.+..|..++.. ..++......+. ++.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4778885 99999999999998 999998888754211 112111001122 344555 45 899
Q ss_pred EEEccCC
Q 023490 182 VLLLISD 188 (281)
Q Consensus 182 ViLavP~ 188 (281)
|+++.|.
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988875
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=90.25 E-value=5.8 Score=30.66 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=52.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH----HCCc---eecCCCcCC-HHhhcCcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGF---TEENGTLGD-IYETISGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~----~~G~---~~~~~t~~~-~~E~l~~AD 180 (281)
.+ ++|.-||+|. |.-....++.. .+.+|+ +.+......+.++ ..+. ....+.... .....+..|
T Consensus 19 ~~-~~vldlG~G~-G~~~~~l~~~~-----~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGS-GSITIEAARLV-----PNGRVY-AIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCC-CHHHHHHHHHC-----CCceEE-EEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 46 8899999988 44333333332 023554 4444333333332 2222 110000001 123346899
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+|++..+.....++++++.+.||||..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987766666788999999999987764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.22 E-value=2.8 Score=36.67 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=31.6
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+|+| |++-|.|. |.||.++|+.|.+. |++|++..|.
T Consensus 2 ~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~vi~~~r~ 38 (248)
T TIGR01832 2 SLEG-KVALVTGANTGLGQGIAVGLAEA------GADIVGAGRS 38 (248)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCc
Confidence 3788 99999996 79999999999998 9998877765
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.2 Score=43.78 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=47.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcC-CHHhhcCcCCEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~-~~~E~l~~ADVVi 183 (281)
..+.|+++|.|||+|..|.+.++.|... +-|++|.+.+...... .+.. +.|+... .. ...+.+.++|+|+
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~----~~~~~v~~~D~~~~~~~~~~l-~~g~~~~---~g~~~~~~~~~~d~vV 73 (438)
T PRK04663 2 DRWQGIKNVVVVGLGITGLSVVKHLRKY----QPQLTVKVIDTRETPPGQEQL-PEDVELH---SGGWNLEWLLEADLVV 73 (438)
T ss_pred CcccCCceEEEEeccHHHHHHHHHHHhc----CCCCeEEEEeCCCCchhHHHh-hcCCEEE---eCCCChHHhccCCEEE
Confidence 3456668899999999999999999876 1126788777543221 1122 2366531 11 1234568899888
Q ss_pred E--ccCC
Q 023490 184 L--LISD 188 (281)
Q Consensus 184 L--avP~ 188 (281)
. ++|+
T Consensus 74 ~SpgI~~ 80 (438)
T PRK04663 74 TNPGIAL 80 (438)
T ss_pred ECCCCCC
Confidence 7 3444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 281 | ||||
| 3fr7_A | 525 | Ketol-Acid Reductoisomerase (Kari) In Complex With | 2e-90 | ||
| 1yve_I | 524 | Acetohydroxy Acid Isomeroreductase Complexed With N | 4e-89 | ||
| 1np3_A | 338 | Crystal Structure Of Class I Acetohydroxy Acid Isom | 8e-10 | ||
| 1yrl_A | 491 | Escherichia Coli Ketol-Acid Reductoisomerase Length | 4e-06 | ||
| 3ulk_A | 491 | E. Coli Ketol-Acid Reductoisomerase In Complex With | 4e-06 |
| >pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525 | Back alignment and structure |
|
| >pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524 | Back alignment and structure |
|
| >pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338 | Back alignment and structure |
|
| >pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491 | Back alignment and structure |
|
| >pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 281 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 5e-94 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 2e-33 | |
| 1yrl_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 8e-31 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-05 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 1e-04 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 5e-94
Identities = 173/196 (88%), Positives = 185/196 (94%)
Query: 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQ 267
KEINGAGINSSFAVHQ
Sbjct: 195 KEINGAGINSSFAVHQ 210
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-33
Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
++ +D+V++L D Q Y++ I +K + L +HGF + H + ++ V
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQV--VPRADLDV 124
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
I + PK G +VR +V+G GI A++Q
Sbjct: 125 IMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQ 154
|
| >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 8e-31
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 24/159 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF + K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNI-VEVGE--QIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
+I V+ V PK G VR Y +G G+ + AVH
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHP 179
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-09
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 20/129 (15%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSIGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKG 239
P
Sbjct: 117 TYFIGHPCH 125
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 6e-05
Identities = 28/263 (10%), Positives = 74/263 (28%), Gaps = 88/263 (33%)
Query: 41 KSLRALKTTRG------RGSALGAQ-MASETALKTPFLLDFETSVFKKDAISLANRDEFI 93
++L L+ + GS G +A + L + +F ++L N +
Sbjct: 142 QALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNS-- 194
Query: 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS-------------- 139
+ ++L I+ + + N++ + ++
Sbjct: 195 ---PETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 140 -----DI----VVK--------------------VGLRKGSRSFAEARAAGFTEE----- 165
++ + + + + T +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 166 -----NGTLGDI-YETISGSDLVLLLIS-----DAAQADNYEKIFSCMKPNSILGLSHGF 214
+ D+ E ++ + L +I+ A DN++ + +C K +I+ S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLNV 365
Query: 215 L-----LGHLQSIGLDFPKNIGV 232
L + + FP + +
Sbjct: 366 LEPAEYRKMFDRLSV-FPPSAHI 387
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 1e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 100.0 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 100.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.87 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.69 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.67 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.67 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.67 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.66 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.66 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.65 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.65 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.64 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.64 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.64 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.63 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.63 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.63 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.62 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.62 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.61 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.61 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.59 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.58 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.58 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.58 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.57 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.57 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.57 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.55 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.55 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.54 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.54 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.54 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.53 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.53 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.51 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.51 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.5 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.5 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.5 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.5 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.49 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.47 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.47 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.47 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.46 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.45 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.44 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.43 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.4 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.4 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.4 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.36 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.35 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.34 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 99.31 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.31 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.31 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.31 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.31 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.3 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.3 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.96 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.29 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.29 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.28 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 99.27 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.27 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.26 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.25 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.25 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.25 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.2 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.2 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.19 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 99.19 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.17 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.16 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.16 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.15 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.15 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.15 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.14 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.14 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.14 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.14 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.13 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.12 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.12 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.12 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.12 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.1 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.09 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.09 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.09 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.08 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.08 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.07 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.06 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.05 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.05 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.03 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.02 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.99 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.98 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.98 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.94 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 98.93 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 98.93 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.92 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.9 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.9 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.88 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.83 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.83 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.81 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.8 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.8 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.8 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.79 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.79 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.78 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.76 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.76 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.76 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.75 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.75 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.71 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.69 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 98.68 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.68 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.66 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.64 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.62 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.61 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.58 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.56 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.53 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.51 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.49 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.48 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.48 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.43 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.4 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.39 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.38 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.38 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.36 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.36 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.36 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.35 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.35 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.35 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.35 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.3 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.28 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.27 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.27 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.27 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.26 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.25 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.25 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.25 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.24 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.22 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.2 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.19 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.18 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.17 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.16 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.15 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 98.15 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.15 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.12 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.11 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.11 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.11 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.09 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.09 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.08 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.08 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.07 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.07 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.01 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.0 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.99 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.99 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.98 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.98 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.98 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.96 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.95 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.92 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.92 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.91 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.9 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.88 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.86 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.84 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.83 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.81 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.79 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.78 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.77 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.77 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.75 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.75 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.74 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.73 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.69 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.68 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.68 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.68 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.67 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.67 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.66 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.66 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.66 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.66 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.65 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.65 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.64 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.62 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.62 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.62 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.61 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.6 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.6 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.59 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.58 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.57 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.57 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.56 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.56 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.55 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.54 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.53 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.53 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.52 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.5 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.49 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.46 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.45 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.44 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.42 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.42 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.41 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.41 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.4 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.38 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.38 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.37 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.37 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.36 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.32 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.27 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.27 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.24 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.24 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.23 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.23 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.23 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.22 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.22 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.21 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.17 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.15 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.14 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.13 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.11 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.11 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.1 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.08 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.08 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.05 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.03 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.03 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.02 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.01 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.99 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.99 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.97 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.97 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.93 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.93 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.92 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.88 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.87 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.81 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.78 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.76 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.75 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.7 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.7 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.69 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.64 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.61 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.59 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.53 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.53 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.53 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.52 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 96.48 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.48 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.46 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 96.46 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.4 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.37 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.37 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.28 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.23 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.21 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.2 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.17 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.17 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 96.11 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.1 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.1 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 96.08 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.07 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 96.0 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.98 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 95.97 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.92 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.92 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.92 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 95.92 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.86 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.86 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.82 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.81 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.81 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.79 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 95.77 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 95.74 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.73 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 95.72 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.72 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 95.7 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.69 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.65 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.65 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.6 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.59 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.57 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 95.55 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.53 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.5 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.48 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.48 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.48 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.47 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 95.47 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.46 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 95.43 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.42 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.39 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.39 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 95.38 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.32 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 95.31 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 95.3 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 95.3 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.29 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 95.28 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.28 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 95.25 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.24 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.22 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.21 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.21 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.2 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 95.16 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.15 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 95.15 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.15 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.1 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 95.09 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.06 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.06 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.05 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 95.05 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 95.0 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.99 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 94.96 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 94.95 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.95 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.94 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.92 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 94.86 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.85 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.85 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 94.83 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.83 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.81 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 94.81 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.8 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.79 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.78 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 94.77 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.77 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.76 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 94.75 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.72 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.7 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.7 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 94.67 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.64 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 94.61 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 94.6 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 94.58 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.58 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 94.57 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.56 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 94.53 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 94.52 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 94.51 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 94.51 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.49 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 94.47 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 94.43 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.42 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.36 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.3 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 94.3 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 94.26 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 94.24 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.19 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.18 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 94.17 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.17 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 94.16 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 94.09 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 94.08 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 94.07 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 94.07 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 94.06 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.05 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.03 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.02 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 94.02 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 93.97 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.96 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.94 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 93.9 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.89 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 93.87 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 93.84 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.81 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 93.81 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 93.8 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 93.76 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.75 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 93.67 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 93.64 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 93.62 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 93.6 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.59 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.57 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 93.57 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 93.49 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.49 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 93.4 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 93.39 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 93.35 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 93.35 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.34 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 93.34 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 93.26 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.21 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.2 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 93.13 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 93.12 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.1 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 93.08 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 93.07 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 93.07 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 93.05 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 93.02 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 93.01 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.01 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 92.97 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 92.92 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 92.9 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 92.9 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 92.88 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 92.85 | |
| 2h1q_A | 270 | Hypothetical protein; ZP_00559375.1, structural ge | 92.84 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.8 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 92.79 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 92.78 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 92.77 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 92.74 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.73 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 92.67 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 92.65 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 92.64 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.63 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 92.63 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-46 Score=366.48 Aligned_cols=213 Identities=82% Similarity=1.225 Sum_probs=196.4
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
...++|+|++|++++++|++..|++|++|+|+|++++..|+|+|+|||||+|+||.++|++|+++++++|+|++|+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r 91 (525)
T 3fr7_A 12 MPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLR 91 (525)
T ss_dssp ---CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred ccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeC
Confidence 46799999999999999999999999999999998779999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCC
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~ 228 (281)
.++++.+.+.+.|+...+++..+++|++++||+|+|++|+..+.+++++++++||+|++|+++|||++.++++.++.+|+
T Consensus 92 ~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p~ 171 (525)
T 3fr7_A 92 KGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPK 171 (525)
T ss_dssp TTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCCT
T ss_pred CchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCCC
Confidence 87788888999999842333468999999999999999999998899999999999999999999999988865678889
Q ss_pred CceEEEeccCCCChhhHHhhhhCccccCCCceeEEEeeeCCCcchhhhhhccC
Q 023490 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQVLSEPLFHLCVGLL 281 (281)
Q Consensus 229 ~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~~d~~g~a~~~~~~~~ 281 (281)
+++|||+|||+||+.||+.|++||++||.|+|++||||||+||+++|++++|+
T Consensus 172 dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala 224 (525)
T 3fr7_A 172 NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWS 224 (525)
T ss_dssp TSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHH
T ss_pred CCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999883
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=307.78 Aligned_cols=185 Identities=30% Similarity=0.452 Sum_probs=165.0
Q ss_pred cccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 72 ~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.|||+..||.+ +...+..+.+- +-.|......|+| |||+|||||++|.++|+|||++ |.+|+|+.|+++
T Consensus 3 ny~n~l~~~~~-~~~~~~c~~m~---~~eF~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~Vglr~~s 71 (491)
T 3ulk_A 3 NYFNTLNLRQQ-LAQLGKCRFMG---RDEFADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA 71 (491)
T ss_dssp CTGGGSCHHHH-HHHHTCCEECC---GGGGTTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEEEECHHH
T ss_pred chhccccHHHH-HHHhccceecc---HHHhcchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEEEeCCCC
Confidence 69999999953 44444444422 3467667789999 9999999999999999999999 999999999543
Q ss_pred -----ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCC
Q 023490 152 -----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDF 226 (281)
Q Consensus 152 -----~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~ 226 (281)
++++.|++.|+.+ .+.+|++++||+|++++||..+.++++++.|+||+|+.|..+|||++.+ .++.+
T Consensus 72 ~~e~~~S~~~A~~~Gf~v-----~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~---~~i~p 143 (491)
T 3ulk_A 72 IAEKRASWRKATENGFKV-----GTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVE---VGEQI 143 (491)
T ss_dssp HHTTCHHHHHHHHTTCEE-----EEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHT---TCCCC
T ss_pred cccccchHHHHHHCCCEe-----cCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCcccccc---ccccc
Confidence 7889999999994 5899999999999999999999999999999999999999999999865 34588
Q ss_pred CCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEEee--eCCCcchhhhhhcc
Q 023490 227 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QVLSEPLFHLCVGL 280 (281)
Q Consensus 227 ~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~--~d~~g~a~~~~~~~ 280 (281)
|+|++||.|+|++||+.|||+|++| +|+|++|||| ||++|+|+|+||+|
T Consensus 144 p~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~Alay 194 (491)
T 3ulk_A 144 RKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAW 194 (491)
T ss_dssp CTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHH
T ss_pred CCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHH
Confidence 9999999999999999999999998 6999999998 89999999999998
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-22 Score=185.87 Aligned_cols=155 Identities=34% Similarity=0.558 Sum_probs=135.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..+++ ++|+|||+|+||.++|++|++. |++|+++++..++..+.+.+.|+.. . +++++++++|+|+++
T Consensus 12 ~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~----~-~~~e~~~~aDvVila 79 (338)
T 1np3_A 12 SIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV----A-DVKTAVAAADVVMIL 79 (338)
T ss_dssp HHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE----E-CHHHHHHTCSEEEEC
T ss_pred chhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE----c-cHHHHHhcCCEEEEe
Confidence 56788 9999999999999999999999 9999988887665567788888863 3 888999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEE
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~a 264 (281)
+|+..+.++++ ++.+.++++++|++++|+++ .+.. +..+.+++|+++||++|+..++++|+.| .|.|..+.
T Consensus 80 vp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii~ 151 (338)
T 1np3_A 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIA 151 (338)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEEE
T ss_pred CCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEEE
Confidence 99999888998 89999999999999999887 5543 2336678999999999999999999987 69999999
Q ss_pred eeeCCCcchhhhhhcc
Q 023490 265 VHQVLSEPLFHLCVGL 280 (281)
Q Consensus 265 v~~d~~g~a~~~~~~~ 280 (281)
++++.++.+.+.+..|
T Consensus 152 ~~~~~~~~a~~~~~~l 167 (338)
T 1np3_A 152 IYQDASGNAKNVALSY 167 (338)
T ss_dssp EEECSSSCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHH
Confidence 9999999999887765
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-17 Score=147.12 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=98.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
++|+|||+|+||.+++++|.+. |+ +|.+++|..++..+...+.|+.. ..++.++++++|+|++++|+
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSCG
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeCH
Confidence 7899999999999999999998 87 89888887654333344458774 56889999999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 189 AAQADNYEKIFSC-MKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 189 ~~~~~vl~ei~~~-mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+...++++++.+. ++++++| ++++|+.+..++. .++.+.+|+|+|||+|..
T Consensus 74 ~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~ 126 (280)
T 3tri_A 74 HQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSS 126 (280)
T ss_dssp GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGG
T ss_pred HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHH
Confidence 8888899999888 8888655 5789999988886 556677899999999854
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-17 Score=154.57 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=103.0
Q ss_pred ccchhhhhcCCCccc----ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce
Q 023490 88 NRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~----~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~ 163 (281)
.+++. +|+|+|.|. ....+|.| +||||||+|+||+++|++++++ |++|+++++.. ..+.+.+.|+.
T Consensus 151 ~~~~~-~r~g~~~w~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~ 220 (365)
T 4hy3_A 151 DADIA-FQEGTELWGGEGNASARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPWL--PRSMLEENGVE 220 (365)
T ss_dssp HHHHH-HHHTCCCCSSSSTTSCCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSSS--CHHHHHHTTCE
T ss_pred HHHHH-HHcCCccccccccccccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCCC--CHHHHhhcCee
Confidence 34444 899995432 23478999 9999999999999999999998 99998888763 34456677876
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEE
Q 023490 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIA 234 (281)
Q Consensus 164 ~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIr 234 (281)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.+ .|-.+ ..+++..+. ..++|+.
T Consensus 221 -----~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~--aaLDV~~ 293 (365)
T 4hy3_A 221 -----PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV--AASDVYP 293 (365)
T ss_dssp -----ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE--EEESCCS
T ss_pred -----eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce--EEeeCCC
Confidence 3589999999999999999987765 775 899999999999965 44222 334442222 4566666
Q ss_pred eccCCCChhh
Q 023490 235 VCPKGMGPSV 244 (281)
Q Consensus 235 vmPntpg~~v 244 (281)
-.|..+.+++
T Consensus 294 ~EPl~~~~pL 303 (365)
T 4hy3_A 294 EEPLPLDHPV 303 (365)
T ss_dssp SSSCCTTCGG
T ss_pred CCCCCCCChh
Confidence 6665555554
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-17 Score=154.05 Aligned_cols=144 Identities=15% Similarity=0.138 Sum_probs=108.4
Q ss_pred ccchhhhhcCCCccc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 88 NRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
.+++. +|+|+|... ....+|.| |+|||||+|+||+++|++|+++ ||+|+++++... ..+.+.+.|+..
T Consensus 140 ~~~~~-~~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~ 210 (351)
T 3jtm_A 140 PGYNQ-VVKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRLQM-APELEKETGAKF 210 (351)
T ss_dssp HHHHH-HHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSSCC-CHHHHHHHCCEE
T ss_pred HHHHH-HHcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCCcc-CHHHHHhCCCeE
Confidence 34444 899999742 22478999 9999999999999999999999 999988887642 345566677763
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+.+ .|-.+ ..+++ +.+....++|+.-
T Consensus 211 ----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~~ 285 (351)
T 3jtm_A 211 ----VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES-GHIGGYSGDVWDP 285 (351)
T ss_dssp ----CSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCSS
T ss_pred ----cCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHh-CCccEEEeCCCCC
Confidence 4589999999999999999987664 775 899999999999965 44222 33443 2233456677777
Q ss_pred ccCCCChhhH
Q 023490 236 CPKGMGPSVR 245 (281)
Q Consensus 236 mPntpg~~vr 245 (281)
.|..+.++++
T Consensus 286 EP~~~~~pL~ 295 (351)
T 3jtm_A 286 QPAPKDHPWR 295 (351)
T ss_dssp SSCCTTCGGG
T ss_pred CCCCCCChhh
Confidence 7876666664
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-17 Score=153.55 Aligned_cols=143 Identities=20% Similarity=0.181 Sum_probs=105.1
Q ss_pred ccchhhhhcCCCccc-----------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH
Q 023490 88 NRDEFIVRGGRDLFK-----------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~-----------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~ 156 (281)
.+.+. +|+|+|... ....+|.| |||||||+|+||+++|++++++ |++|+++++.. ..+.
T Consensus 128 ~~~~~-~~~g~W~~~~~~~~~~~~~~~~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~ 197 (352)
T 3gg9_A 128 QYVAS-LKHGAWQQSGLKSTTMPPNFGIGRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGREN--SKER 197 (352)
T ss_dssp HHHHH-HHTTCTTCCCCCCTTSCTTTTSBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSHH--HHHH
T ss_pred HHHHH-HHcCCCCcccccccccccccccCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCCC--CHHH
Confidence 34444 889999642 12478999 9999999999999999999999 99998887753 3345
Q ss_pred HHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEeC-Ccch------hhhhhcccCCC
Q 023490 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFP 227 (281)
Q Consensus 157 A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~aa-G~~l------~~l~~~~~~~~ 227 (281)
+.+.|+.. ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-.+ ..+++ +.+..
T Consensus 198 ~~~~g~~~----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~-g~i~g 272 (352)
T 3gg9_A 198 ARADGFAV----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNR-GRPGM 272 (352)
T ss_dssp HHHTTCEE----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHH-TSSSE
T ss_pred HHhcCceE----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHh-CCccE
Confidence 66778863 4589999999999999999987765 666 8999999999999754 3221 33443 22223
Q ss_pred CCceEEEeccCCCChhhH
Q 023490 228 KNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 228 ~~i~VIrvmPntpg~~vr 245 (281)
..++|+.-.|..+.++++
T Consensus 273 A~lDV~~~EPl~~~~pL~ 290 (352)
T 3gg9_A 273 AAIDVFETEPILQGHTLL 290 (352)
T ss_dssp EEECCCSSSCCCSCCGGG
T ss_pred EEecccCCCCCCCCChhh
Confidence 455666666655555553
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-17 Score=153.84 Aligned_cols=138 Identities=21% Similarity=0.264 Sum_probs=102.9
Q ss_pred hhhhcCCCcc----cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC
Q 023490 92 FIVRGGRDLF----KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (281)
Q Consensus 92 ~~vr~G~W~f----~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~ 167 (281)
..+|+|+|.. .+...+|.| |||||||+|+||+++|++++++ ||+|+++++.... .+.+ .|+..
T Consensus 151 ~~~r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~-~~~~--~g~~~--- 217 (345)
T 4g2n_A 151 RMVRSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTRLS-HALE--EGAIY--- 217 (345)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSCCC-HHHH--TTCEE---
T ss_pred HHHHcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCCcc-hhhh--cCCeE---
Confidence 3489999962 122378999 9999999999999999999999 9999988876432 2222 26653
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEeccC
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
..+++|++++||+|++|+|.++.++ +++ +.++.||+|++||.+ .|-.+ ..+++ +.+....++|+.-.|
T Consensus 218 -~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~gA~LDVf~~EP- 294 (345)
T 4g2n_A 218 -HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRS-KHLFAAGLDVFANEP- 294 (345)
T ss_dssp -CSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCTTTT-
T ss_pred -eCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHh-CCceEEEecCCCCCC-
Confidence 3489999999999999999987765 775 899999999999965 44222 33443 333345677777788
Q ss_pred CCChhhH
Q 023490 239 GMGPSVR 245 (281)
Q Consensus 239 tpg~~vr 245 (281)
.+.++++
T Consensus 295 ~~~~pL~ 301 (345)
T 4g2n_A 295 AIDPRYR 301 (345)
T ss_dssp SCCTTGG
T ss_pred CCCchHH
Confidence 5566664
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=142.12 Aligned_cols=117 Identities=22% Similarity=0.301 Sum_probs=95.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~----~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||+|+||.+++++|.+. |+ +|.+++|..++..+.+.+.|+.. ..+++|+++++|+|++++|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav~ 72 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVAKNADILILSIK 72 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999998 87 89888876543333334568764 5688999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
++...++++++.+.++++++|+ +++|+++..++. .++.+.+++++|||+|-
T Consensus 73 ~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~ 124 (247)
T 3gt0_A 73 PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPA 124 (247)
T ss_dssp TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHH
Confidence 9888889999999999998765 889999888876 55667789999999875
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-17 Score=152.32 Aligned_cols=142 Identities=20% Similarity=0.301 Sum_probs=104.3
Q ss_pred cchhhhhcCCCc-cc--ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 89 RDEFIVRGGRDL-FK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 89 ~~e~~vr~G~W~-f~--~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
+++. +|+|+|. +. ....+|.| +||||||+|+||+++|++++++ |++|+++++... ..+.+.+.|+.
T Consensus 122 ~~~~-~~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~-- 190 (330)
T 4e5n_A 122 ADAF-VRSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAKAL-DTQTEQRLGLR-- 190 (330)
T ss_dssp HHHH-HHTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSSCC-CHHHHHHHTEE--
T ss_pred HHHH-HHhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCCC-cHhHHHhcCce--
Confidence 3444 8999996 32 22378999 9999999999999999999998 999988887642 34455667776
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEeC-Ccch------hhhhhcccCCCCCceEEEec
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~aa-G~~l------~~l~~~~~~~~~~i~VIrvm 236 (281)
..+++|++++||+|++|+|.+..+. +++ +.++.||+|++|+.++ |-.+ ..+++ +.+.+..++|+...
T Consensus 191 ---~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~-g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 191 ---QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALER-GQLGGYAADVFEME 266 (330)
T ss_dssp ---ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCGGG
T ss_pred ---eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHh-CCccEEEecccccc
Confidence 3489999999999999999987664 776 8999999999999654 4221 23443 22223455666666
Q ss_pred -------cCCCChhhH
Q 023490 237 -------PKGMGPSVR 245 (281)
Q Consensus 237 -------Pntpg~~vr 245 (281)
|..+.++++
T Consensus 267 ~~~~~~~Pl~~~~~L~ 282 (330)
T 4e5n_A 267 DWARADRPQQIDPALL 282 (330)
T ss_dssp CTTCTTCCSSCCHHHH
T ss_pred cccccCCCCCCCchHH
Confidence 655555554
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-16 Score=147.72 Aligned_cols=142 Identities=17% Similarity=0.133 Sum_probs=106.5
Q ss_pred ccchhhhhcCCCcc-cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC
Q 023490 88 NRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (281)
Q Consensus 88 ~~~e~~vr~G~W~f-~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~ 166 (281)
.+++. +|+|+|.. .+...+|.| ++|||||+|+||+++|++++++ |++|+++++...+ +.+.+.|+.
T Consensus 120 ~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~--- 186 (307)
T 1wwk_A 120 FADRK-MREGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYPNE--ERAKEVNGK--- 186 (307)
T ss_dssp HHHHH-HTTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCE---
T ss_pred HHHHH-HHcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHhhcCcc---
Confidence 34444 89999963 222378999 9999999999999999999999 9999888876543 456677876
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEeCCcch-------hhhhhcccCCCCCceEEEecc
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~aaG~~l-------~~l~~~~~~~~~~i~VIrvmP 237 (281)
..+++|++++||+|++|+|+++.+ ++++ +.++.||+|++|+.++.-.+ ..+++ +.+.+..++|+..+|
T Consensus 187 --~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~eP 263 (307)
T 1wwk_A 187 --FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE-GWIAGAGLDVFEEEP 263 (307)
T ss_dssp --ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEESCCSSSS
T ss_pred --ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEecCCCCC
Confidence 348999999999999999998765 4775 78899999999986543222 23443 223345677888888
Q ss_pred CCCChhhH
Q 023490 238 KGMGPSVR 245 (281)
Q Consensus 238 ntpg~~vr 245 (281)
..+.+++.
T Consensus 264 ~~~~~~L~ 271 (307)
T 1wwk_A 264 LPKDHPLT 271 (307)
T ss_dssp CCTTCGGG
T ss_pred CCCCChHH
Confidence 65666553
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=149.64 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=104.7
Q ss_pred cccchhhhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 87 ANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
..+++. +|+|+|... +...+|.| ++|||||+|+||+++|++++++ |++|+++++.... +.+.+.|+.
T Consensus 142 ~~~~~~-~~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-- 209 (335)
T 2g76_A 142 PQATAS-MKDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ-- 209 (335)
T ss_dssp HHHHHH-HHTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE--
T ss_pred HHHHHH-HHcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce--
Confidence 334444 899999632 22378999 9999999999999999999998 9999888876443 356677876
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEeCCcch-------hhhhhcccCCCCCceEEEec
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~aaG~~l-------~~l~~~~~~~~~~i~VIrvm 236 (281)
..+++|++++||+|++|+|.++.+ ++++ +.++.||+|++|++++...+ ..+++ +.+.+..++|+..+
T Consensus 210 ---~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~-g~i~gA~lDV~~~E 285 (335)
T 2g76_A 210 ---QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQS-GQCAGAALDVFTEE 285 (335)
T ss_dssp ---ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEEEEESCCSSS
T ss_pred ---eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHh-CCccEEEEeecCCC
Confidence 348999999999999999998765 4775 79999999999997543332 23443 22223356788888
Q ss_pred cCCCChhh
Q 023490 237 PKGMGPSV 244 (281)
Q Consensus 237 Pntpg~~v 244 (281)
| .+.+++
T Consensus 286 P-~~~~~L 292 (335)
T 2g76_A 286 P-PRDRAL 292 (335)
T ss_dssp S-CSCCHH
T ss_pred C-CCCchH
Confidence 8 455544
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-17 Score=155.29 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=104.8
Q ss_pred hcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
+..+.+. +|+|+|....+ .+|.| +||||||+|+||+++|++|+++ ||+|+++++..... +.. .+..
T Consensus 118 ~~~~~~~-~~~g~W~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~--~~~~-- 183 (324)
T 3hg7_A 118 LPLYREQ-QKQRLWQSHPY-QGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRER-AGF--DQVY-- 183 (324)
T ss_dssp HHHHHHH-HHTTCCCCCCC-CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-TTC--SEEE--
T ss_pred hHHHHHH-HhhCCCcCCCC-ccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHh-hhh--hccc--
Confidence 3344444 89999975434 78999 9999999999999999999999 99999888764321 100 1111
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEec
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrvm 236 (281)
...+++|++++||+|++|+|.++.++ +++ +.++.||+|++||.+ .|-.+ ..+++ +.+....++|+.-.
T Consensus 184 --~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~~E 260 (324)
T 3hg7_A 184 --QLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRT-GKLGMAVLDVFEQE 260 (324)
T ss_dssp --CGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHT-TSSSEEEESCCSSS
T ss_pred --ccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHc-CCceEEEeccCCCC
Confidence 14589999999999999999987765 776 789999999999965 44322 33443 33334567888888
Q ss_pred cCCCChhhH
Q 023490 237 PKGMGPSVR 245 (281)
Q Consensus 237 Pntpg~~vr 245 (281)
|..+.++++
T Consensus 261 Pl~~~~pL~ 269 (324)
T 3hg7_A 261 PLPADSPLW 269 (324)
T ss_dssp SCCTTCTTT
T ss_pred CCCCCChhh
Confidence 876666664
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=148.42 Aligned_cols=135 Identities=21% Similarity=0.254 Sum_probs=90.1
Q ss_pred hhhhcCCCccc--c-cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC
Q 023490 92 FIVRGGRDLFK--L-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (281)
Q Consensus 92 ~~vr~G~W~f~--~-~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t 168 (281)
..+|+|+|... + ...+|.| |||||||+|+||+++|++++++ |++|+++++...+ ..++..
T Consensus 150 ~~~~~g~W~~~~~~~~~~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~~~~---- 212 (340)
T 4dgs_A 150 RLVREGRWAAGEQLPLGHSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVDWIA---- 212 (340)
T ss_dssp HHHHTTCC------CCCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSCCEE----
T ss_pred HHHhcCCcccccCcCccccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccCcee----
Confidence 34999999642 2 2378999 9999999999999999999998 9999888876532 234442
Q ss_pred cCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEeccCC
Q 023490 169 LGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAVCPKG 239 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrvmPnt 239 (281)
..+++|++++||+|++|+|.++.++ +++ +.++.||++++|+.+ .|-.+ ..+++ +.+....++|+.-.|..
T Consensus 213 ~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDVf~~EP~~ 291 (340)
T 4dgs_A 213 HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKS-GTIAGAGLDVFVNEPAI 291 (340)
T ss_dssp CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---------------CCSSEEEESCCSSSSSC
T ss_pred cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCceEEEeCCcCCCCCC
Confidence 4589999999999999999987765 775 899999999999864 45322 23332 33334567888888865
Q ss_pred CChhhH
Q 023490 240 MGPSVR 245 (281)
Q Consensus 240 pg~~vr 245 (281)
+. +++
T Consensus 292 ~~-~L~ 296 (340)
T 4dgs_A 292 RS-EFH 296 (340)
T ss_dssp CS-HHH
T ss_pred cc-chh
Confidence 43 443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-17 Score=153.44 Aligned_cols=142 Identities=12% Similarity=0.086 Sum_probs=103.9
Q ss_pred cccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC
Q 023490 87 ANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~ 166 (281)
..+.+. +|+|+|.... ..++.| |||||||+|+||+++|+.++++ ||+|+++++..... .++...
T Consensus 118 ~~~~~~-~~~g~W~~~~-~~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~~- 181 (315)
T 3pp8_A 118 DDYQAL-KNQALWKPLP-EYTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVESY- 181 (315)
T ss_dssp HHHHHH-HHTTCCCCCC-CCCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEEE-
T ss_pred hHHHHH-HHhcccCCCC-CCCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhhh-
Confidence 334444 8999997653 488999 9999999999999999999999 99999888765321 223210
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEecc
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrvmP 237 (281)
....+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.+ .|-.+ ..+++ +.+....++|+.-.|
T Consensus 182 ~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~gA~lDV~~~EP 260 (315)
T 3pp8_A 182 VGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDS-GKLKGAMLDVFSQEP 260 (315)
T ss_dssp ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCSSSS
T ss_pred cccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHh-CCccEEEcCCCCCCC
Confidence 012378999999999999999987765 775 899999999999965 44222 33443 233345677777777
Q ss_pred CCCChhhH
Q 023490 238 KGMGPSVR 245 (281)
Q Consensus 238 ntpg~~vr 245 (281)
..+.++++
T Consensus 261 l~~~~pL~ 268 (315)
T 3pp8_A 261 LPQESPLW 268 (315)
T ss_dssp CCTTCGGG
T ss_pred CCCCChhh
Confidence 76666664
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-16 Score=150.59 Aligned_cols=147 Identities=16% Similarity=0.062 Sum_probs=108.5
Q ss_pred cccchhhhhcCCCccc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCc
Q 023490 87 ANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGF 162 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~ 162 (281)
..+++. +|+|+|.+. ....+|.| ++|||||+|+||+++|++|+++ |++ |+++++... ..+.+.+.|+
T Consensus 139 ~~~~~~-~~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~~~-~~~~~~~~g~ 209 (364)
T 2j6i_A 139 VPAHEQ-IINHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQAL-PKDAEEKVGA 209 (364)
T ss_dssp HHHHHH-HHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSSCC-CHHHHHHTTE
T ss_pred HHHHHH-HHhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCCcc-chhHHHhcCc
Confidence 334444 899999742 22378999 9999999999999999999999 997 988887643 3445667787
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcc------hhhhhhcccCCCCCceEE
Q 023490 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKNIGVI 233 (281)
Q Consensus 163 ~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~------l~~l~~~~~~~~~~i~VI 233 (281)
.. ..+++|++++||+|++|+|+++.++ +++ +.++.||++++|+.+ .|-. +..+++ +.+.+..++|+
T Consensus 210 ~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~-g~i~gA~LDVf 284 (364)
T 2j6i_A 210 RR----VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALES-GQLRGYGGDVW 284 (364)
T ss_dssp EE----CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCC
T ss_pred Ee----cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHc-CCCcEEEEecC
Confidence 63 3589999999999999999987654 775 789999999998854 4422 133443 22334556777
Q ss_pred EeccCCCChhhHHh
Q 023490 234 AVCPKGMGPSVRRL 247 (281)
Q Consensus 234 rvmPntpg~~vr~~ 247 (281)
.-.|..+.++++.+
T Consensus 285 ~~EP~~~~~pL~~~ 298 (364)
T 2j6i_A 285 FPQPAPKDHPWRDM 298 (364)
T ss_dssp SSSSCCTTCHHHHC
T ss_pred CCCCCCCCChHHhc
Confidence 77777666666543
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-17 Score=152.30 Aligned_cols=138 Identities=11% Similarity=0.085 Sum_probs=101.7
Q ss_pred hhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH
Q 023490 93 IVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (281)
Q Consensus 93 ~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~ 172 (281)
.+++|+|.......+|.| +||||||+|+||+++|++|+++ ||+|+++++..... +.. ...+. ..++
T Consensus 120 ~~~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~-----~~~l 185 (324)
T 3evt_A 120 QRGARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA-----FTAT 185 (324)
T ss_dssp HTTTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE-----GGGC
T ss_pred HHhcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc-----cCCH
Confidence 388999975433489999 9999999999999999999999 99999888765321 111 11122 3478
Q ss_pred HhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEeC-Ccch------hhhhhcccCCCCCceEEEeccCCCChh
Q 023490 173 YETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~aa-G~~l------~~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
+|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-.+ ..+++ +.+....++|+.-.|..+.++
T Consensus 186 ~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~gA~lDV~~~EPl~~~~p 264 (324)
T 3evt_A 186 ADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDH-HQLSMAALDVTEPEPLPTDHP 264 (324)
T ss_dssp HHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHT-TSCSEEEESSCSSSSCCTTCG
T ss_pred HHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHh-CCceEEEeCCCCCCCCCCCCh
Confidence 999999999999999987765 675 8999999999999654 4222 33443 333345677777777666666
Q ss_pred hH
Q 023490 244 VR 245 (281)
Q Consensus 244 vr 245 (281)
++
T Consensus 265 L~ 266 (324)
T 3evt_A 265 LW 266 (324)
T ss_dssp GG
T ss_pred hh
Confidence 54
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-16 Score=151.20 Aligned_cols=143 Identities=15% Similarity=0.061 Sum_probs=102.4
Q ss_pred ccchhhhhcCCCccc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 88 NRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
.+++. +|+|+|... ....+|.| ++|||||+|+||+++|++++++ ||+|+++++... ..+.+.+.|+..
T Consensus 167 ~~~~~-~~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~~-~~~~~~~~G~~~ 237 (393)
T 2nac_A 167 PSHEW-ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHRL-PESVEKELNLTW 237 (393)
T ss_dssp HHHHH-HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCC-CHHHHHHHTCEE
T ss_pred HHHHH-HHcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCCcc-chhhHhhcCcee
Confidence 34444 899999631 12368999 9999999999999999999999 999988877643 334566677763
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..+++|++++||+|++|+|.++.+ ++++ +.++.||++++|+.+ .|-.+ ..+++ +.+....++|+.-
T Consensus 238 ----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~gA~lDV~~~ 312 (393)
T 2nac_A 238 ----HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES-GRLAGYAGDVWFP 312 (393)
T ss_dssp ----CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT-TSEEEEEESCCSS
T ss_pred ----cCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc-CCeeEEEEEecCC
Confidence 357999999999999999998665 4775 889999999999854 44222 23433 2222234556555
Q ss_pred ccCCCChhh
Q 023490 236 CPKGMGPSV 244 (281)
Q Consensus 236 mPntpg~~v 244 (281)
+|..+.+++
T Consensus 313 EP~~~~~pL 321 (393)
T 2nac_A 313 QPAPKDHPW 321 (393)
T ss_dssp SSCCTTCGG
T ss_pred CCCCCCChh
Confidence 565444444
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-16 Score=145.04 Aligned_cols=146 Identities=16% Similarity=0.117 Sum_probs=106.3
Q ss_pred cccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC
Q 023490 87 ANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~ 166 (281)
..+++. +|+|+|... ...++.| ++|||||+|+||+++|++++++ |++|+++++...+ ..+.+.|+..
T Consensus 121 ~~~~~~-~~~g~w~~~-~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~-- 187 (313)
T 2ekl_A 121 YTSMAL-AKSGIFKKI-EGLELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDIR--EKAEKINAKA-- 187 (313)
T ss_dssp HHHHHH-HHTTCCCCC-CCCCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE--
T ss_pred HHHHHH-HHcCCCCCC-CCCCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcch--hHHHhcCcee--
Confidence 334444 899999732 2378999 9999999999999999999999 9999888876543 3466778763
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEeCCcch-------hhhhhcccCCCCCceEEEecc
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~aaG~~l-------~~l~~~~~~~~~~i~VIrvmP 237 (281)
.+++|++++||+|++|+|.++.+ ++++ +.++.||+|++|+.++--.+ ..+++ +.+.+..++|+..+|
T Consensus 188 ---~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~eP 263 (313)
T 2ekl_A 188 ---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKK-GKVYAYATDVFWNEP 263 (313)
T ss_dssp ---CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHT-TCEEEEEESCCSSSS
T ss_pred ---cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCCcEEEEecCCCCC
Confidence 48999999999999999998765 4774 78899999999986543332 22332 222233567888888
Q ss_pred CCCChhhHHhhhh
Q 023490 238 KGMGPSVRRLYVQ 250 (281)
Q Consensus 238 ntpg~~vr~~y~~ 250 (281)
.. ......||..
T Consensus 264 ~~-~~~~~~L~~~ 275 (313)
T 2ekl_A 264 PK-EEWELELLKH 275 (313)
T ss_dssp CC-SHHHHHHHHS
T ss_pred CC-CcccchHhhC
Confidence 43 5533345543
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-16 Score=145.55 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=101.3
Q ss_pred ccchhhhhcCCCc-cc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec-CCcccHHHHHHCCc
Q 023490 88 NRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGF 162 (281)
Q Consensus 88 ~~~e~~vr~G~W~-f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r-~~~~s~~~A~~~G~ 162 (281)
.+++. +|+|+|. +. +...++.| ++|||||+|+||+++|++++++ |++|+++++ .... +.+.+.|+
T Consensus 121 ~~~~~-~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~--~~~~~~g~ 190 (320)
T 1gdh_A 121 EGEKM-IRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASS--SDEASYQA 190 (320)
T ss_dssp HHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCH--HHHHHHTC
T ss_pred HHHHH-HHcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcCh--hhhhhcCc
Confidence 34444 8999996 22 23368999 9999999999999999999998 999988887 6443 34556677
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEe-CC--cch----hhhhhcccCCCCCceEE
Q 023490 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HG--FLL----GHLQSIGLDFPKNIGVI 233 (281)
Q Consensus 163 ~~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~a-aG--~~l----~~l~~~~~~~~~~i~VI 233 (281)
.. ..+++|++++||+|++|+|.+..+ ++++ +.++.||+|++|+.+ .| +.. ..+++ +.+.+..++|+
T Consensus 191 ~~----~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~-g~i~gA~lDv~ 265 (320)
T 1gdh_A 191 TF----HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA-GRLAYAGFDVF 265 (320)
T ss_dssp EE----CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCC
T ss_pred EE----cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCC
Confidence 63 337999999999999999997755 4775 688999999999865 44 221 22333 22223345666
Q ss_pred EeccCCCChhh
Q 023490 234 AVCPKGMGPSV 244 (281)
Q Consensus 234 rvmPntpg~~v 244 (281)
..+| .+.+++
T Consensus 266 ~~eP-~~~~~L 275 (320)
T 1gdh_A 266 AGEP-NINEGY 275 (320)
T ss_dssp TTTT-SCCTTG
T ss_pred CCCC-CCCChh
Confidence 6677 444444
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-16 Score=147.03 Aligned_cols=138 Identities=19% Similarity=0.128 Sum_probs=99.7
Q ss_pred cccchhhhhcCCCccc--------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH
Q 023490 87 ANRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~--------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~ 158 (281)
..+++. +|+|+|... .+..++.| ++|||||+|+||+++|++++++ |++|+++++...+ ..+.
T Consensus 138 ~~~~~~-~~~g~w~~~~~~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~ 207 (347)
T 1mx3_A 138 TWLHQA-LREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSD--GVER 207 (347)
T ss_dssp HHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCT--THHH
T ss_pred HHHHHH-HHcCCcccccccccccccCccCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhHh
Confidence 334444 899999421 12368999 9999999999999999999998 9999988876543 2345
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCC
Q 023490 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKN 229 (281)
Q Consensus 159 ~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~ 229 (281)
+.|+.. ..+++|++++||+|++|+|+++.+ .+++ +.++.||+|++|+.+ .|-.+ ..+++.+ +.+..
T Consensus 208 ~~g~~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~-i~gA~ 282 (347)
T 1mx3_A 208 ALGLQR----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR-IRGAA 282 (347)
T ss_dssp HHTCEE----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTS-EEEEE
T ss_pred hcCCee----cCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCC-CcEEE
Confidence 567653 348999999999999999998765 4774 789999999999865 44221 2344322 22345
Q ss_pred ceEEEeccCC
Q 023490 230 IGVIAVCPKG 239 (281)
Q Consensus 230 i~VIrvmPnt 239 (281)
++|+..+|-.
T Consensus 283 lDV~~~EP~~ 292 (347)
T 1mx3_A 283 LDVHESEPFS 292 (347)
T ss_dssp ESCCSSSSCC
T ss_pred EeecccCCCC
Confidence 6677777743
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=141.10 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=96.5
Q ss_pred cchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC
Q 023490 89 RDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (281)
Q Consensus 89 ~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t 168 (281)
+++. +|+|+|..... .+|.| +||||||+|+||+++|++|+++ |++|+++++..... ..+..
T Consensus 103 ~~~~-~~~g~w~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~---- 163 (290)
T 3gvx_A 103 NNEL-MKAGIFRQSPT-TLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVDQ------NVDVI---- 163 (290)
T ss_dssp HHHH-HHTTCCCCCCC-CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCCT------TCSEE----
T ss_pred hhhH-hhhcccccCCc-eeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEecccccc------ccccc----
Confidence 4444 89999986533 78999 9999999999999999999999 99999888765321 11221
Q ss_pred cCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEeC-Ccch------hhhhhcccCCCCCceEEEeccC
Q 023490 169 LGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~aa-G~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
..+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+.++ |-.+ ..+++ +......++|+...|.
T Consensus 164 ~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~ga~lDV~~~EP~ 241 (290)
T 3gvx_A 164 SESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKE-RSDVWYLSDVWWNEPE 241 (290)
T ss_dssp CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHH-CTTCEEEESCCTTTTS
T ss_pred cCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhh-ccceEEeeccccCCcc
Confidence 4589999999999999999977765 665 8999999999999754 4321 23443 2222345566655553
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.8e-16 Score=149.37 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=92.4
Q ss_pred hhhhcCCCcccc-cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC
Q 023490 92 FIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (281)
Q Consensus 92 ~~vr~G~W~f~~-~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~ 170 (281)
..+|+|+|.... ...++.| |||||||+|+||+++|++++++ ||+|+++++..... ..+... ..
T Consensus 137 ~~~~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~~----~~ 200 (416)
T 3k5p_A 137 VSAHAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVKP----AA 200 (416)
T ss_dssp HHHHTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBEE----CS
T ss_pred HhhhcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcEe----cC
Confidence 348999997532 3478999 9999999999999999999999 99999888763221 112322 45
Q ss_pred CHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEeccCCC
Q 023490 171 DIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+.+ .|-.+ ..+++ +.+....++|+...|..+
T Consensus 201 sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~-g~i~gAalDVf~~EP~~~ 278 (416)
T 3k5p_A 201 SLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQE-GHLAGAAIDVFPVEPASN 278 (416)
T ss_dssp SHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT-TSEEEEEECCCSSCCSST
T ss_pred CHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc-CCccEEEeCCCCCCCCCc
Confidence 89999999999999999988776 775 899999999999964 45322 23443 222234455555555443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-15 Score=147.57 Aligned_cols=134 Identities=19% Similarity=0.178 Sum_probs=91.3
Q ss_pred ccchhhhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC
Q 023490 88 NRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~ 166 (281)
.+.+. +|+|+|... +...+|.| |||||||+|+||+.+|++++++ ||+|+++++..... ..++..
T Consensus 123 ~~~~~-~~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~-----~~~~~~-- 187 (404)
T 1sc6_A 123 EANAK-AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP-----LGNATQ-- 187 (404)
T ss_dssp HHHHH-HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-----CTTCEE--
T ss_pred HHHHH-HHcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc-----cCCcee--
Confidence 33444 899999642 23478999 9999999999999999999999 99998888764321 112332
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEecc
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrvmP 237 (281)
..+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+.+ .|-.+ ..+++ +...+..++|+..+|
T Consensus 188 --~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~gA~lDVf~~EP 264 (404)
T 1sc6_A 188 --VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS-KHLAGAAIDVFPTEP 264 (404)
T ss_dssp --CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT-TSEEEEEEEC-----
T ss_pred --cCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHc-CCccEEEEeecCCCC
Confidence 4589999999999999999987664 775 789999999999965 44221 23433 222233456776666
Q ss_pred CC
Q 023490 238 KG 239 (281)
Q Consensus 238 nt 239 (281)
..
T Consensus 265 ~~ 266 (404)
T 1sc6_A 265 AT 266 (404)
T ss_dssp --
T ss_pred CC
Confidence 44
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-15 Score=138.84 Aligned_cols=107 Identities=11% Similarity=0.090 Sum_probs=85.7
Q ss_pred ccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC
Q 023490 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~ 167 (281)
.+++. +|+|+|....+..++.| ++|||||+|+||+++|++++++ |++|+++++... +. +...
T Consensus 103 ~~~~~-~~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~~----~~~~--- 164 (303)
T 1qp8_A 103 QYGEK-MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---EG----PWRF--- 164 (303)
T ss_dssp HHHHH-HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---CS----SSCC---
T ss_pred HHHHH-HHcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---cc----Cccc---
Confidence 34444 89999964323358999 9999999999999999999999 999988887643 11 3321
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEeCC
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHG 213 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~aaG 213 (281)
..+++|++++||+|++|+|+++.+ ++++ +.++.||+|++|++++-
T Consensus 165 -~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~sr 211 (303)
T 1qp8_A 165 -TNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGR 211 (303)
T ss_dssp -BSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred -CCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCC
Confidence 458899999999999999998765 4776 89999999999997644
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=141.35 Aligned_cols=132 Identities=18% Similarity=0.116 Sum_probs=98.6
Q ss_pred cchhhhhcCCCcc--cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC
Q 023490 89 RDEFIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (281)
Q Consensus 89 ~~e~~vr~G~W~f--~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~ 166 (281)
+.+. +++|+|.. .....+|.| +++||||+|.||+.+|+.++.+ ||+|+++++... +...+.++.
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~~---~~~~~~~~~--- 184 (334)
T 3kb6_A 119 IEDR-VKKLNFSQDSEILARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVKR---EDLKEKGCV--- 184 (334)
T ss_dssp HHHH-HHTTCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCC---HHHHHTTCE---
T ss_pred cccc-ccccccccccccccceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCccc---hhhhhcCce---
Confidence 3444 88888843 223478999 9999999999999999999999 999988876543 234456665
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEecc
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvmP 237 (281)
..+++|++++||+|++|+|.+..++ +++ +.+..||+|++|| .+.|-.+ ..+++ |.+.+..+||+.-.|
T Consensus 185 --~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~-g~i~gA~LDV~~~EP 261 (334)
T 3kb6_A 185 --YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQR-GKFSGLGLDVFEDEE 261 (334)
T ss_dssp --ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCEEEEEESCCTTHH
T ss_pred --ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHh-CCceEEEEeCCCCCC
Confidence 4689999999999999999988876 787 8999999999998 5666433 33443 323234455555444
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-15 Score=143.48 Aligned_cols=132 Identities=18% Similarity=0.094 Sum_probs=98.2
Q ss_pred ccchhhhh-cCCCcc--cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 88 NRDEFIVR-GGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 88 ~~~e~~vr-~G~W~f--~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
.+.+. +| +|+|.+ .+...+|.| +||||||+|+||+++|++++++ |++|+++++.... ..+.++.
T Consensus 124 ~~~~~-~~~~g~~~w~~~~~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~~~- 190 (343)
T 2yq5_A 124 EFRYR-MDHDHDFTWPSNLISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPFLT- 190 (343)
T ss_dssp HHHHH-HHHHCCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTTCE-
T ss_pred HHHHH-HHHcCCcccccCCCccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhcccc-
Confidence 34444 78 887654 233478999 9999999999999999999999 9999988887542 1223333
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEeC-Ccch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~aa-G~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..+++|++++||+|++|+|.++.++ +++ +.++.||+|++|+.++ |-.+ ..+++ +.+....++|+.-
T Consensus 191 ----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~-g~i~gA~LDV~~~ 265 (343)
T 2yq5_A 191 ----YTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQD-GEIAGAGLDTLAG 265 (343)
T ss_dssp ----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSCEEESCCTT
T ss_pred ----ccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc-CCCcEEEeccccc
Confidence 3489999999999999999987765 665 8899999999999654 4221 33443 3333456777777
Q ss_pred cc
Q 023490 236 CP 237 (281)
Q Consensus 236 mP 237 (281)
.|
T Consensus 266 EP 267 (343)
T 2yq5_A 266 ES 267 (343)
T ss_dssp GG
T ss_pred CC
Confidence 77
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-15 Score=139.01 Aligned_cols=137 Identities=20% Similarity=0.207 Sum_probs=97.0
Q ss_pred ccchhhhhcCCCc-cc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce
Q 023490 88 NRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (281)
Q Consensus 88 ~~~e~~vr~G~W~-f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~ 163 (281)
.+++. +|+|+|. +. +...++.| ++|||||+|+||+++|++++++ |++|+++++...+.. +.
T Consensus 119 ~~~~~-~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~~-------~~ 183 (311)
T 2cuk_A 119 EGAAY-ARDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPLP-------YP 183 (311)
T ss_dssp HHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSSS-------SC
T ss_pred HHHHH-HHcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCcccc-------cc
Confidence 34444 8999995 21 22368999 9999999999999999999999 999988887654321 22
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEeCCcch-h--hhhh-c-ccCCCCCceEEEec
Q 023490 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-G--HLQS-I-GLDFPKNIGVIAVC 236 (281)
Q Consensus 164 ~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~aaG~~l-~--~l~~-~-~~~~~~~i~VIrvm 236 (281)
..+++|++++||+|++|+|++..+ ++++ +.++.||++++|+.++...+ . .+.. . +.+....++|+..+
T Consensus 184 -----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~e 258 (311)
T 2cuk_A 184 -----FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPE 258 (311)
T ss_dssp -----BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSS
T ss_pred -----cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCC
Confidence 348999999999999999998654 5776 78899999999986544332 1 1211 0 12212345666667
Q ss_pred cCCCChhh
Q 023490 237 PKGMGPSV 244 (281)
Q Consensus 237 Pntpg~~v 244 (281)
|-.+.+++
T Consensus 259 P~~~~~~L 266 (311)
T 2cuk_A 259 PLPPGHPL 266 (311)
T ss_dssp SCCTTSGG
T ss_pred CCCCCChh
Confidence 75445544
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-15 Score=141.59 Aligned_cols=137 Identities=22% Similarity=0.315 Sum_probs=97.7
Q ss_pred ccchhhhhcCCCcccc--cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 88 NRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 88 ~~~e~~vr~G~W~f~~--~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
.+++. +|+|+|.... ...++.| ++|||||+|+||+++|+.++++ |++|+++++..... .|+..
T Consensus 141 ~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~~~- 205 (333)
T 3ba1_A 141 ECDKY-VRRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNYTY- 205 (333)
T ss_dssp HHHHH-HHTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCSEE-
T ss_pred HHHHH-HHcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCcee-
Confidence 34444 9999996421 1368999 9999999999999999999998 99998888765321 25542
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEE-eCCcch------hhhhhcccCCCCCceEEEec
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~-aaG~~l------~~l~~~~~~~~~~i~VIrvm 236 (281)
..+++|++++||+|++++|++..+ .+++ +.++.||++++|+. +.|..+ ..+++ +......++|+..+
T Consensus 206 ---~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~-g~i~ga~lDv~~~E 281 (333)
T 3ba1_A 206 ---YGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVE-GRLGGAGLDVFERE 281 (333)
T ss_dssp ---ESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHH-TSSCEEEESCCTTT
T ss_pred ---cCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHc-CCCeEEEEecCCCC
Confidence 458999999999999999998654 5774 78899999999885 455332 22333 21222345677666
Q ss_pred cCCCChhh
Q 023490 237 PKGMGPSV 244 (281)
Q Consensus 237 Pntpg~~v 244 (281)
|. |.+++
T Consensus 282 P~-~~~~L 288 (333)
T 3ba1_A 282 PE-VPEKL 288 (333)
T ss_dssp TC-CCGGG
T ss_pred CC-Ccchh
Confidence 73 33444
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-15 Score=149.13 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=89.7
Q ss_pred cccchhhhhcCCCcc-cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 87 ANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f-~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
..+++. +|+|+|.. .+...+|.| ++|||||+|+||+++|++|+++ |++|+++++.. ..+.+.+.|+..
T Consensus 119 ~~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~g~~~- 187 (529)
T 1ygy_A 119 PAADAS-LREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIEL- 187 (529)
T ss_dssp HHHHHH-HHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCEE-
T ss_pred HHHHHH-HHhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCcEE-
Confidence 334444 99999963 222378999 9999999999999999999999 99998887764 245567778773
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhH-HHHHH-HHHhcCCCCcEEEEeC
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~-~~vl~-ei~~~mKpgaILi~aa 212 (281)
.+++|++++||+|++|+|+++. .++++ ++++.||+|++|++++
T Consensus 188 ----~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~a 232 (529)
T 1ygy_A 188 ----LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232 (529)
T ss_dssp ----CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred ----cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECC
Confidence 3899999999999999999854 45777 5899999999998653
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=129.17 Aligned_cols=125 Identities=19% Similarity=0.178 Sum_probs=91.0
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc--------------cHHHHHHCCceecCCCcC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGTLG 170 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~--------------s~~~A~~~G~~~~~~t~~ 170 (281)
..++.+ ++|||||+|+||.++|++|.+. |++|++++|..++ ..+.+.+.+... ..
T Consensus 14 ~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 82 (245)
T 3dtt_A 14 NLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH----LA 82 (245)
T ss_dssp -----C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----EE
T ss_pred ccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----cc
Confidence 478899 9999999999999999999999 9999999887432 111122233332 45
Q ss_pred CHHhhcCcCCEEEEccCChhHHHHHHHH-HhcCCCCcEEEEeC-Cc----------------c-hhhhhhcccCCCCCce
Q 023490 171 DIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF----------------L-LGHLQSIGLDFPKNIG 231 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~vl~ei-~~~mKpgaILi~aa-G~----------------~-l~~l~~~~~~~~~~i~ 231 (281)
+++|++++||+|++++|++...+++.++ .+.+ ++++|++++ |+ . .+.+++ .+|. .+
T Consensus 83 ~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~~-~~ 157 (245)
T 3dtt_A 83 AFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFPE-AK 157 (245)
T ss_dssp EHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HSTT-SE
T ss_pred CHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCCC-Ce
Confidence 7889999999999999999988888877 6666 888887655 32 2 234554 4554 69
Q ss_pred EEEeccCCCChhhH
Q 023490 232 VIAVCPKGMGPSVR 245 (281)
Q Consensus 232 VIrvmPntpg~~vr 245 (281)
|++.||+++.+-..
T Consensus 158 vv~~~~~~~a~v~~ 171 (245)
T 3dtt_A 158 VVKTLNTMNASLMV 171 (245)
T ss_dssp EEECSTTSCHHHHH
T ss_pred EEEeecccCHHHhc
Confidence 99999999887653
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=133.00 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=91.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hcCcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E-~l~~ADVViLavP~ 188 (281)
++|||||+|+||.++|+.|++. |+ +|+++++.. +..+.+.+.|+.. ....++++ ++++||+||+++|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~------G~~~~V~~~dr~~-~~~~~a~~~G~~~--~~~~~~~~~~~~~aDvVilavp~ 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDINP-ESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSCH-HHHHHHHHTTSCS--EEESCTTGGGGGCCSEEEECSCG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCCCEEEEEECCH-HHHHHHHHCCCcc--hhcCCHHHHhhccCCEEEEeCCH
Confidence 8999999999999999999999 98 888777664 4456677888741 11357788 89999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcch---hhhhhcccCCCCCceEEEeccCC
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKG 239 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l---~~l~~~~~~~~~~i~VIrvmPnt 239 (281)
....++++++.+.++++++|+++++++. ..++. .++. .++..||..
T Consensus 105 ~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~ 153 (314)
T 3ggo_A 105 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIA 153 (314)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECC
T ss_pred HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCccc
Confidence 9888899999999999999999888873 34443 3333 788889943
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=132.48 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=93.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC----cEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|+|+|||+|+||.++|++|.+. | ++|.+++|..+ ...+...+.|+.. ..+..++++++|+||+++
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCEEEEEe
Confidence 7899999999999999999988 8 78888887653 2344455678774 457889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEE-eCCcchhhhhhc-ccCCCCCceEEEeccCCCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSI-GLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~-aaG~~l~~l~~~-~~~~~~~i~VIrvmPntpg 241 (281)
|++...+++.++.+.++++++|++ +.|+....+++. ...++ +.+|++.|||+|.
T Consensus 93 ~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~-~~~vv~~~p~~p~ 148 (322)
T 2izz_A 93 KPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRP-APRVIRCMTNTPV 148 (322)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSS-CCEEEEEECCGGG
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCC-CCeEEEEeCCcHH
Confidence 998888899999999999998775 578887655431 00112 4589999998875
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-15 Score=136.48 Aligned_cols=142 Identities=20% Similarity=0.151 Sum_probs=99.9
Q ss_pred ccchhhhhcCCCcc-c---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce
Q 023490 88 NRDEFIVRGGRDLF-K---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (281)
Q Consensus 88 ~~~e~~vr~G~W~f-~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~ 163 (281)
.+++. +|+|+|.. . +...++.| ++|||||+|.||+++|+.++.+ |++|+++++.... .+.+.+.|+.
T Consensus 130 ~~~~~-~~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~g~~ 200 (330)
T 2gcg_A 130 EAIEE-VKNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQPR-PEEAAEFQAE 200 (330)
T ss_dssp HHHHH-HHTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSSCC-HHHHHTTTCE
T ss_pred HHHHH-HHcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-hhHHHhcCce
Confidence 34444 89999952 1 12378999 9999999999999999999998 9999888876432 3445566766
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEe-CC--cch----hhhhhcccCCCCCceEEE
Q 023490 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HG--FLL----GHLQSIGLDFPKNIGVIA 234 (281)
Q Consensus 164 ~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~a-aG--~~l----~~l~~~~~~~~~~i~VIr 234 (281)
. .+++|++++||+|++|+|++..+ ++++ ++++.||++++|+.. .| +.. ..+++ +......++|+.
T Consensus 201 ~-----~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~-~~i~ga~lDv~~ 274 (330)
T 2gcg_A 201 F-----VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALAS-GKIAAAGLDVTS 274 (330)
T ss_dssp E-----CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEESCCS
T ss_pred e-----CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHc-CCccEEEeCCCC
Confidence 3 38899999999999999998764 4664 788999999998864 44 221 22333 111123355555
Q ss_pred eccCCCChhh
Q 023490 235 VCPKGMGPSV 244 (281)
Q Consensus 235 vmPntpg~~v 244 (281)
-.|-.+++++
T Consensus 275 ~epl~~~~~l 284 (330)
T 2gcg_A 275 PEPLPTNHPL 284 (330)
T ss_dssp SSSCCTTCGG
T ss_pred CCCCCCCChh
Confidence 5554455555
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=136.05 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=88.6
Q ss_pred cccchhhhhcCC---Ccc-c----ccccccCCCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCCcccHHHH
Q 023490 87 ANRDEFIVRGGR---DLF-K----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA 157 (281)
Q Consensus 87 ~~~~e~~vr~G~---W~f-~----~~~~~l~G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~~s~~~A 157 (281)
..+++. +|+|+ |.. . ....+|.| ++|||||+|+||+++|+.++ .+ |++|+++++... ..+.+
T Consensus 133 ~~~~~~-~~~g~~~~w~~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~~~-~~~~~ 203 (348)
T 2w2k_A 133 SYSERA-ARTGDPETFNRVHLEIGKSAHNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVAPA-DAETE 203 (348)
T ss_dssp HHHHHH-HTTCCHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSSCC-CHHHH
T ss_pred HHHHHH-HHcCCCcccccccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCCCc-chhhH
Confidence 334444 89999 931 1 12378999 99999999999999999999 88 999988887643 33445
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEeCC
Q 023490 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHG 213 (281)
Q Consensus 158 ~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~aaG 213 (281)
.+.|+.. ..++++++++||+|++|+|++..+ ++++ ++++.||++++|+..+.
T Consensus 204 ~~~g~~~----~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~sr 257 (348)
T 2w2k_A 204 KALGAER----VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257 (348)
T ss_dssp HHHTCEE----CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred hhcCcEE----eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCC
Confidence 5567663 347899999999999999998765 4775 78899999999886543
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.5e-15 Score=137.42 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=96.4
Q ss_pred cccchhhhhcCCCcc--cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 87 ANRDEFIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f--~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
..+++. +|+|+|.+ .+...+|.| ++|||||+|+||+++|++++++ |++|+++++..... + +.++.
T Consensus 121 ~~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~- 187 (333)
T 1dxy_A 121 GKVQAQ-LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDFD- 187 (333)
T ss_dssp HHHHHH-HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTCE-
T ss_pred HHHHHH-HHcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhccc-
Confidence 334444 89999854 223378999 9999999999999999999999 99998888765432 1 12232
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.+ .|-.+ ..+++ +.+.+..++|+.-
T Consensus 188 ----~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~-g~i~gA~LDV~~~ 262 (333)
T 1dxy_A 188 ----YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS-GKLAGVGIDTYEY 262 (333)
T ss_dssp ----ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT-TSEEEEEESSCTT
T ss_pred ----cCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCccEEEEecCCC
Confidence 3489999999999999999988664 775 789999999999864 44221 23443 2222345666666
Q ss_pred cc
Q 023490 236 CP 237 (281)
Q Consensus 236 mP 237 (281)
.|
T Consensus 263 EP 264 (333)
T 1dxy_A 263 ET 264 (333)
T ss_dssp HH
T ss_pred CC
Confidence 66
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=136.23 Aligned_cols=134 Identities=16% Similarity=0.087 Sum_probs=98.8
Q ss_pred cccchhhhhcCCCcc--cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 87 ANRDEFIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f--~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
..+++. +|+|+|.+ .+...++.| ++|||||+|.||+++|++++++ |++|+++++...+. + +.++.
T Consensus 122 ~~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~- 188 (331)
T 1xdw_A 122 AYTTSR-TAKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYCT- 188 (331)
T ss_dssp HHHHHH-HTTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTCE-
T ss_pred HHHHHH-HHcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhccc-
Confidence 334444 89999864 223378999 9999999999999999999999 99999888765432 1 12233
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.+ .|-.+ ..+++ +.+.+..++|+.-
T Consensus 189 ----~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~-g~i~gA~LDV~~~ 263 (331)
T 1xdw_A 189 ----QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES-GKLGGYGCDVLDG 263 (331)
T ss_dssp ----ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCTT
T ss_pred ----cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHh-CCceEEEEecCCC
Confidence 3489999999999999999987654 775 789999999999865 44221 33443 2333456788888
Q ss_pred ccC
Q 023490 236 CPK 238 (281)
Q Consensus 236 mPn 238 (281)
+|.
T Consensus 264 EP~ 266 (331)
T 1xdw_A 264 EAS 266 (331)
T ss_dssp GGG
T ss_pred CCC
Confidence 874
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=134.75 Aligned_cols=136 Identities=16% Similarity=0.077 Sum_probs=98.0
Q ss_pred hcccchhhhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
+..+++. +|+|+|.+. +...++.| ++|||||+|+||+++|++++++ |++|+++++...+. +.+ ++..
T Consensus 122 ~~~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~~ 189 (333)
T 1j4a_A 122 DKAMDEK-VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGYY 189 (333)
T ss_dssp HHHHHHH-HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTCB
T ss_pred HHHHHHH-HHcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCee
Confidence 3344444 899998642 23378999 9999999999999999999999 99998888765432 222 2331
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEe
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrv 235 (281)
..+++|++++||+|++|+|.+..++ +++ +.++.||++++|+.+ .|-.+ ..+++ +.+.+..++|+.-
T Consensus 190 ----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~-g~i~gA~LDV~~~ 264 (333)
T 1j4a_A 190 ----VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDS-GKIFGYAMDVYEG 264 (333)
T ss_dssp ----CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCTT
T ss_pred ----cCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCceEEEEecCCC
Confidence 2379999999999999999987654 775 788999999998865 44221 23443 2233456677777
Q ss_pred ccC
Q 023490 236 CPK 238 (281)
Q Consensus 236 mPn 238 (281)
+|.
T Consensus 265 EP~ 267 (333)
T 1j4a_A 265 EVG 267 (333)
T ss_dssp CTT
T ss_pred CCC
Confidence 773
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=123.25 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=102.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
+++|+|||+|+||.++|+.|... |.|++|+++++.. +..+.+.+.|... ....+++++++++|+|++++|++.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~~~-~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD----HPHYKIVGYNRSD-RSRDIALERGIVD--EATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSSH-HHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhC----CCCcEEEEEcCCH-HHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHH
Confidence 38999999999999999999876 2346887777653 3344555667631 013477788999999999999998
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeCCcch---hhhhhcccCCCC-CceEEEeccC------CCChhhHHhhhhCccccCCCc
Q 023490 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSIGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGI 259 (281)
Q Consensus 191 ~~~vl~ei~~~-mKpgaILi~aaG~~l---~~l~~~~~~~~~-~i~VIrvmPn------tpg~~vr~~y~~g~~~~~~g~ 259 (281)
..++++++.+. ++++++|++.++++. ..+.+ .++. ...++..+|- +|+.....+| .|.
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~--------~g~ 147 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANVNLF--------ENA 147 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCTTTT--------TTS
T ss_pred HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhHHHh--------CCC
Confidence 88899999999 999999998887765 34443 3343 5567776775 4443333333 244
Q ss_pred eeEEEeeeCCCcchhhhhh
Q 023490 260 NSSFAVHQVLSEPLFHLCV 278 (281)
Q Consensus 260 ~~~~av~~d~~g~a~~~~~ 278 (281)
+..+..+...+..+.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~v~ 166 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQ 166 (290)
T ss_dssp EEEEEECTTCCTTHHHHHH
T ss_pred eEEEecCCCCCHHHHHHHH
Confidence 5555555445555555543
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-14 Score=135.21 Aligned_cols=111 Identities=23% Similarity=0.322 Sum_probs=88.1
Q ss_pred ccchhhhhcCCCc-----cc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH
Q 023490 88 NRDEFIVRGGRDL-----FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (281)
Q Consensus 88 ~~~e~~vr~G~W~-----f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~ 159 (281)
.+++. +|+|+|. +. +...++.| ++|||||+|.||+++|+.++.+ |++|+++++.... +.+.+
T Consensus 121 ~~~~~-~~~~~w~~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~~~~ 190 (334)
T 2dbq_A 121 KGDRF-VRSGEWKKRGVAWHPKWFLGYDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EVERE 190 (334)
T ss_dssp HHHHH-HHTSHHHHTTCCCCTTTTCCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHH
T ss_pred HHHHH-HHcCCCcccccccccccccccCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hhHhh
Confidence 34444 8899995 21 12368999 9999999999999999999998 9999888877543 44555
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEE-eCC
Q 023490 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGL-SHG 213 (281)
Q Consensus 160 ~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~-aaG 213 (281)
.|+. ..++++++++||+|++|+|++..+ ++++ ++++.||++++|+. +.|
T Consensus 191 ~g~~-----~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg 242 (334)
T 2dbq_A 191 LNAE-----FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARG 242 (334)
T ss_dssp HCCE-----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred cCcc-----cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCC
Confidence 6765 348899999999999999998865 4775 78899999999885 455
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=123.58 Aligned_cols=110 Identities=13% Similarity=0.201 Sum_probs=90.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||+|+||.++|++|.+. | ++|.+++|..++ .|+.. ..+.+++++++|+|++++|
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK 67 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence 7899999999999999999988 8 688888877543 56664 4578899999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
+....+++.++.+.++++.+|+++.|+....+++ .++.+.++++++|++|-
T Consensus 68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~ 118 (262)
T 2rcy_A 68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPC 118 (262)
T ss_dssp TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHH
Confidence 9888889998888885555677899999877765 44555578899998764
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=124.03 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=92.2
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
|++|+|||+ |+||.++|++|.+. |++|.+++|..+ ..+...+.|+. ..+..++++++|+|++++|+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r~~~-~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~ 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS------AHHLAAIEIAPE-GRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDN 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECCSHH-HHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCch
Confidence 479999999 99999999999998 999988877643 34445556754 236778899999999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEE-eCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 190 AQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~-aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
...++++++.+.++++++|++ +.|..+..++. . ..+..|++.||+.|+.
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~---~-~~~~~~v~~~P~~~~~ 128 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP---E-RADITYFIGHPCHPPL 128 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC---C-CTTSEEEEEEECCSCS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh---h-hCCCeEEecCCCCccc
Confidence 877899999999999998875 45555555543 2 3467899999999876
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-14 Score=122.11 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=90.3
Q ss_pred hhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCH
Q 023490 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDI 172 (281)
Q Consensus 94 vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vii-g~r~~~~s~~~A~~~G~~~~~~t~~~~ 172 (281)
+-+|-|.++.-+.-.. |++|+|||+|+||.++|+.|.+. |++|.+ ++|..++..+.+.+.|... ..+.
T Consensus 7 ~~~~~~~~~~~~~~m~-mmkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~ 75 (220)
T 4huj_A 7 HSSGVDLGTENLYFQS-MTTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV----KAVE 75 (220)
T ss_dssp ----------CTTGGG-SCCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE----EECC
T ss_pred ccccccccccchhhhc-CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc----ccCh
Confidence 4556676653211112 47999999999999999999998 999888 6666554444455566543 2355
Q ss_pred HhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCc--------------chhhhhhcccCCCCCceEEEecc
Q 023490 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGF--------------LLGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~--------------~l~~l~~~~~~~~~~i~VIrvmP 237 (281)
.+.++++|+|++++|+....+++.++.+ + ++++|+ .+.|+ ..+.+++ .+| +..|+++||
T Consensus 76 ~~~~~~aDvVilavp~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~vv~~~~ 149 (220)
T 4huj_A 76 LKDALQADVVILAVPYDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKVVKAFN 149 (220)
T ss_dssp HHHHTTSSEEEEESCGGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEEEEESC
T ss_pred HHHHhcCCEEEEeCChHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCEEECCC
Confidence 6678999999999999888888887666 4 577766 45666 3556665 555 568999999
Q ss_pred CCCChhh
Q 023490 238 KGMGPSV 244 (281)
Q Consensus 238 ntpg~~v 244 (281)
|+|..-+
T Consensus 150 ~~~~~v~ 156 (220)
T 4huj_A 150 TLPAAVL 156 (220)
T ss_dssp SSCHHHH
T ss_pred CCCHHHh
Confidence 9986654
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-14 Score=133.13 Aligned_cols=112 Identities=20% Similarity=0.190 Sum_probs=87.4
Q ss_pred cccchhhhhcCCCcc----ccc---ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH
Q 023490 87 ANRDEFIVRGGRDLF----KLL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f----~~~---~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~ 159 (281)
..+++. +|+|.|.. ..+ +.+|.| ++|||||+|+||+++|+.++++ |++|+++++.... +.+.+
T Consensus 117 ~~~~~~-~~~g~w~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~ 186 (333)
T 2d0i_A 117 HYADKF-IRRGEWESHAKIWTGFKRIESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRKV--NVEKE 186 (333)
T ss_dssp HHHHHH-HHTTCCCCHHHHHTTSCCCCCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCCH--HHHHH
T ss_pred HHHHHH-HHcCCCCcCcccccCCcccCCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhh
Confidence 334444 89999952 112 268999 9999999999999999999999 9999888877543 44556
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCChhHH-HHHH-HHHhcCCCCcEEEEe-CCc
Q 023490 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLS-HGF 214 (281)
Q Consensus 160 ~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~-~vl~-ei~~~mKpgaILi~a-aG~ 214 (281)
.|+.. .++++++++||+|++|+|++..+ ++++ ++++.||++ +|+.. .|.
T Consensus 187 ~g~~~-----~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~ 238 (333)
T 2d0i_A 187 LKARY-----MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGA 238 (333)
T ss_dssp HTEEE-----CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGG
T ss_pred cCcee-----cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCc
Confidence 67663 48899999999999999998554 5776 678999999 88754 443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=122.30 Aligned_cols=97 Identities=15% Similarity=0.118 Sum_probs=79.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEEccC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS 187 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVViLavP 187 (281)
|++|+|||+|+||.++|+.|++. |+ +|+++++.. +..+.+.+.|+.. ....+++++++ ++|+|++++|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~~d~~~-~~~~~~~~~g~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDINP-ESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSCH-HHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEEEeCCH-HHHHHHHHCCCcc--cccCCHHHHhcCCCCEEEEcCC
Confidence 57999999999999999999998 87 888777653 3345566777641 01347788999 9999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
++...++++++.+.++++++|+++++++.
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~ 100 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVTDQGSVKG 100 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCT
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCcH
Confidence 99888899999999999999998877764
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=123.54 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=83.0
Q ss_pred hhcCCCc----ccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-cccHHHHHHCCceecCC
Q 023490 94 VRGGRDL----FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-SRSFAEARAAGFTEENG 167 (281)
Q Consensus 94 vr~G~W~----f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-~~s~~~A~~~G~~~~~~ 167 (281)
+|.+-|. +... .... +++|||||+|+||.++|++|.+. |+ +|.++++.. .+..+.+.+.|+..
T Consensus 5 ~~~~~~~~~~~~~~~-~~~~-~~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~--- 73 (312)
T 3qsg_A 5 HHHSSGVDLGTENLY-FQSN-AMKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC--- 73 (312)
T ss_dssp ----------------------CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE---
T ss_pred cccccccccCccccc-ccCC-CCEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE---
Confidence 6666674 3221 2233 38999999999999999999999 99 999888863 44456667788775
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
..+++|+++++|+||+++|+....++++++.+.++++++|++...+..
T Consensus 74 -~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd~st~~~ 121 (312)
T 3qsg_A 74 -KASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSP 121 (312)
T ss_dssp -CSCHHHHHHHCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEECCCCCH
T ss_pred -eCCHHHHHhcCCEEEEecCchhHHHHHHhhHhhcCCCCEEEEcCCCCH
Confidence 568999999999999999999988888999999999999998877664
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=121.29 Aligned_cols=113 Identities=15% Similarity=0.208 Sum_probs=85.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|+|+|||+|+||.++|++|.+. | ++|.+++|..++..+...+.|+.. ..+.++++ ++|+|++++|+..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATLPELH-SDDVLILAVKPQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCHHHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCchh
Confidence 5899999999999999999998 9 899888876443333333457764 34677888 9999999999665
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-CCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~a-aG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
..+++.++.+ + +++|++. .|+....+++ .++.+..+++.+||+|.
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~ 115 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPG 115 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGG
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHH
Confidence 5566665544 4 8888765 8888877765 55666789999998764
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=128.13 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=91.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc----CCEEEEcc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~----ADVViLav 186 (281)
+++|+|||+|+||.++|++|++. |++|+++++.. ...+.+.+.|+.. ..++++++++ +|+|++++
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~-~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilav 76 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAA------NHSVFGYNRSR-SGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAV 76 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT------TCCEEEECSCH-HHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECS
T ss_pred CCEEEEEeecHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeC
Confidence 37899999999999999999999 99998887664 4556778888753 4578887764 79999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccCCCChh
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
|+....++++++.++ +++++|+++++++.. .++. .++ +..++..|| +-|++
T Consensus 77 P~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~---~~~-~~~~v~~HP-maG~e 130 (341)
T 3ktd_A 77 PMTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKA---RNM-QHRYVGSHP-MAGTA 130 (341)
T ss_dssp CHHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHH---TTC-GGGEECEEE-CCSCC
T ss_pred CHHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHH---hCC-CCcEecCCc-ccccc
Confidence 998777888888776 899999999998854 3433 333 568888888 44443
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=121.47 Aligned_cols=95 Identities=20% Similarity=0.305 Sum_probs=80.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|||||+|+||.+||++|.+. |++|.+++|..+ ..+...+.|... ..++.|+++++|+|++++|+.+
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~~~-~~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQS-AVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCCHH-HHHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence 68999999999999999999999 999999998754 345566778875 6799999999999999999987
Q ss_pred HHH-HHH---HHHhcCCCCcEEEEeCCcch
Q 023490 191 QAD-NYE---KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 ~~~-vl~---ei~~~mKpgaILi~aaG~~l 216 (281)
+.+ ++. .+++.+++|++||+.+-+..
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p 101 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAP 101 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCH
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCH
Confidence 764 665 37899999999999887665
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=118.15 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=85.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
+++|+|||+|+||.++++.|... |++|.++++..++..+.+.+.|+.. ..+++|+++++|+|++++|+..
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~~ 72 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQL 72 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcHh
Confidence 57999999999999999999988 8888888776443333333457653 4588899999999999999776
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-CCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~a-aG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
..+++. .++++++|+.. .|+....++. .++.+.++++.||++|.
T Consensus 73 ~~~v~~----~l~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~ 117 (259)
T 2ahr_A 73 FETVLK----PLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNA 117 (259)
T ss_dssp HHHHHT----TSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGG
T ss_pred HHHHHH----HhccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchH
Confidence 555554 35588877654 6888877665 34555688999998664
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-12 Score=116.21 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=88.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-----------C--------------ceec
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--------------FTEE 165 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-----------G--------------~~~~ 165 (281)
+++|+|||.|.||.++|+.+... |++|+++++..+ ..+.+.+. | +..
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~- 75 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDINTD-ALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY- 75 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-
Confidence 48999999999999999999999 999998887643 23333222 1 121
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChh--HHHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~--~~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
..++++++++||+||+++|.+. ...++.++.+.++++++|+ ..+++.+..+.. .++....++..||..|
T Consensus 76 ---~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p 147 (283)
T 4e12_A 76 ---SDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANH 147 (283)
T ss_dssp ---ESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSS
T ss_pred ---eCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCC
Confidence 4578889999999999999974 3457889999999999887 577887776654 2233457888888765
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-13 Score=128.73 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=89.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+|.| |+|||||+|+||+++|++++++ ||+|+++++.. + ....+.. ..+++|++++||+|++|
T Consensus 115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~----~-~~~~~~~-----~~sl~ell~~aDiV~l~ 177 (381)
T 3oet_A 115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPPR----A-ARGDEGD-----FRTLDELVQEADVLTFH 177 (381)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH----H-HTTCCSC-----BCCHHHHHHHCSEEEEC
T ss_pred CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCh----H-HhccCcc-----cCCHHHHHhhCCEEEEc
Confidence 57999 9999999999999999999999 99998887631 1 1112222 56899999999999999
Q ss_pred cCChhH----HH-HHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEeccCCCChhhH
Q 023490 186 ISDAAQ----AD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 186 vP~~~~----~~-vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrvmPntpg~~vr 245 (281)
+|.+.. ++ +++ +.++.||+|++||.+ .|-.+ ..+++ +.+....++|+.-.|. |..+++
T Consensus 178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDV~e~EP~-~~~~L~ 248 (381)
T 3oet_A 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNA-GQPLSVVLDVWEGEPD-LNVALL 248 (381)
T ss_dssp CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTTS-CCHHHH
T ss_pred CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCCeEEEeeccccCCC-Ccchhh
Confidence 999876 54 776 799999999999965 45322 23443 3333456778777885 344443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-13 Score=127.58 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=85.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+|.| ++|||||+|+||+++|++|+++ |++|+++++... ....|.. ..+++|++++||+|++|
T Consensus 112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~-----~~~~g~~-----~~~l~ell~~aDvV~l~ 174 (380)
T 2o4c_A 112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPPRQ-----AREPDGE-----FVSLERLLAEADVISLH 174 (380)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHHH-----HHSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCChh-----hhccCcc-----cCCHHHHHHhCCEEEEe
Confidence 57999 9999999999999999999999 999988775421 1123433 45899999999999999
Q ss_pred cCChhH----H-HHHH-HHHhcCCCCcEEEEe-CCcch------hhhhhcccCCCCCceEEEecc
Q 023490 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 186 vP~~~~----~-~vl~-ei~~~mKpgaILi~a-aG~~l------~~l~~~~~~~~~~i~VIrvmP 237 (281)
+|.+.. + ++++ +.++.||+|++|+.+ .|-.+ ..+++ +.+....++|+..+|
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~-g~i~~A~LDV~~~EP 238 (380)
T 2o4c_A 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG-GADLEVALDVWEGEP 238 (380)
T ss_dssp CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTT
T ss_pred ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCCceEEeeeeccCC
Confidence 999886 4 4775 799999999999865 44222 23433 222244566666677
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-12 Score=114.09 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=79.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|+|||+|+||.++|++|.+. |++|.+++|..++ .+...+.|+.. ..+++|+++++|+|++++|+..
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRNPAK-CAPLVALGARQ----ASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSSGGG-GHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence 58999999999999999999999 9999999887543 44455567764 5689999999999999999974
Q ss_pred -HHHHH---HHHHhcCCCCcEEEEeCCcch
Q 023490 191 -QADNY---EKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 -~~~vl---~ei~~~mKpgaILi~aaG~~l 216 (281)
..+++ +++.+.++++++|++......
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~ 99 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTVDD 99 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCCCH
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCCCH
Confidence 45577 678899999999998877664
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.6e-12 Score=114.77 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=80.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|||||+|+||.++|++|.+. |++|.++++..++ .+...+.|+.. ..+++|+++++|+|++++|...
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~~-~~~l~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~ 89 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRTLSK-CDELVEHGASV----CESPAEVIKKCKYTIAMLSDPC 89 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGGG-GHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHH
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHCCCeE----cCCHHHHHHhCCEEEEEcCCHH
Confidence 49999999999999999999999 9999988887543 45556778764 5689999999999999999865
Q ss_pred H-HHHH---HHHHhcCCCCcEEEEeCCcchh
Q 023490 191 Q-ADNY---EKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 191 ~-~~vl---~ei~~~mKpgaILi~aaG~~l~ 217 (281)
. .+++ +++.+.++++++|++..++...
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~ 120 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGKGYIDMSTVDAE 120 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCCHH
T ss_pred HHHHHHhCchhhhhccCCCCEEEECCCCCHH
Confidence 4 4577 5788999999999988877643
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=109.24 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=78.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
|+|+|||+|+||.++|+.|.+. |++|.++++..+ ..+.+.+.|+.. ....+++++ +++|+|++++|++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~--~~~~~~~~~-~~~D~vi~av~~~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQQS-TCEKAVERQLVD--EAGQDLSLL-QTAKIIFLCTPIQLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHTTSCS--EEESCGGGG-TTCSEEEECSCHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHhCCCCc--cccCCHHHh-CCCCEEEEECCHHHH
Confidence 5899999999999999999998 999888876533 344455667631 013477888 999999999999888
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCcchhhh
Q 023490 192 ADNYEKIFSCMKPNSILGLSHGFLLGHL 219 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaILi~aaG~~l~~l 219 (281)
.++++++.+.++++++|++.++++...+
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~ 98 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIA 98 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHH
Confidence 8899999999999999988877775433
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-12 Score=113.25 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=79.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh-h
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~-~ 190 (281)
|+|||||+|+||.++|++|.+. |++|.+++|..++ .+...+.|+.. ..+++|+++++|+|++++|+. .
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRSPEK-AEELAALGAER----AATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGGG-GHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence 7999999999999999999999 9999988877543 45556678775 568999999999999999965 4
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeCCcchh
Q 023490 191 QADNY---EKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 191 ~~~vl---~ei~~~mKpgaILi~aaG~~l~ 217 (281)
..+++ +++.+.++++++|++..+....
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~ 100 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPA 100 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHH
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCCCHH
Confidence 55677 6788999999999988877653
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.2e-12 Score=113.77 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=79.6
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|+||| +|+||.++|+.|++. |++|.++++... .+.+++++++|+|++++|++.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~~------------------~~~~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPINL 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCcc------------------cCHHHHhcCCCEEEEeCCHHH
Confidence 7999999 999999999999998 999888876532 145688999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEecc
Q 023490 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmP 237 (281)
..++++++.++++++++|+++++++...++......+ .+++..+|
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP 122 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHP 122 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEE
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCC
Confidence 8889999999999999999999988543332111222 45666666
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-12 Score=117.96 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=74.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
+||||||+|+||..+|++|.+. |++|++++|..++ .+...+.|... ..++.|+++++|+||+++|+..+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTASK-AEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence 5899999999999999999999 9999999887543 33445667765 67899999999999999999776
Q ss_pred HH-HH-HHHHhcCCCCcEEEEeCCcchh
Q 023490 192 AD-NY-EKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 192 ~~-vl-~ei~~~mKpgaILi~aaG~~l~ 217 (281)
.+ ++ .++.+.++++.++++.+-+...
T Consensus 75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~ 102 (297)
T 4gbj_A 75 VEELFSMELVEKLGKDGVHVSMSTISPE 102 (297)
T ss_dssp HHHHSCHHHHHHHCTTCEEEECSCCCHH
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCChH
Confidence 54 55 4789999999999988776653
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-13 Score=118.64 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=86.2
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
+.+ ++|+|||+|+||.++|++|.+. |++|.+++|... .+...+.|+. ..+.+++++++|+|++++|
T Consensus 17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~-----~~~~~~~~~~aDvVilav~ 82 (201)
T 2yjz_A 17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAE-----VLCYSEAASRSDVIVLAVH 82 (201)
Confidence 566 8999999999999999999998 999888877643 2223334554 2377889999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE-EeCCcc--------hhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 188 DAAQADNYEKIFSCMKPNSILG-LSHGFL--------LGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi-~aaG~~--------l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
++....++ ++. .++++++|+ ++.|+. ...+++ .++. -+++++|||+|..-.
T Consensus 83 ~~~~~~v~-~l~-~~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~ 142 (201)
T 2yjz_A 83 REHYDFLA-ELA-DSLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWAL 142 (201)
Confidence 97655565 443 356788765 677775 245554 4554 489999999987644
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=110.05 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=81.1
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+.+ ++|+|||+|+||.++++.|... |++ |.++++..++..+...+.|+.. ..+++++++++|+|+++
T Consensus 7 ~~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~a 75 (266)
T 3d1l_A 7 SIED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYSRTEESARELAQKVEAEY----TTDLAEVNPYAKLYIVS 75 (266)
T ss_dssp CGGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSHHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEEC
T ss_pred CCCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEeCCHHHHHHHHHHcCCce----eCCHHHHhcCCCEEEEe
Confidence 3566 8999999999999999999998 888 7777766433223334447664 45788999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEE-eCCcchhhhhh
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQS 221 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~-aaG~~l~~l~~ 221 (281)
+|+....++++++.+.++++++|++ +.|+....+..
T Consensus 76 v~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~ 112 (266)
T 3d1l_A 76 LKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG 112 (266)
T ss_dssp CCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT
T ss_pred cCHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH
Confidence 9999887788899899999998875 56666655543
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=110.80 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=87.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCCceec--------------
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------------- 165 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~~~-------------- 165 (281)
|++|+|||.|.||.++|..|... |++|+++++..+. .+.+ .+.|...+
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~~-~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 87 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTEDI-LAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 87 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence 58999999999999999999998 9999988876432 2221 12332100
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
-....+++|++++||+||+++|.... ..++.++.+.++++++|+ ..+|+.+..+.. .++..-.+++.||+.|.
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~ 163 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPV 163 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSST
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCc
Confidence 00134778899999999999998653 347788888999999876 567888877765 33333468888987764
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-11 Score=113.69 Aligned_cols=93 Identities=19% Similarity=0.130 Sum_probs=77.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCc------ccHHHHHHCCceecCCCcC-CHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~------~s~~~A~~~G~~~~~~t~~-~~~E~l~~ADVVi 183 (281)
++|||||+|+||.++|++|.+. | ++|+++++... ...+...+.|+ . . +++|++++||+||
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~-----~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV-E-----PLDDVAGIACADVVL 92 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC-E-----EESSGGGGGGCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC-C-----CCCHHHHHhcCCEEE
Confidence 7999999999999999999999 9 99998888641 22334445565 2 3 6789999999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
+++|+....+.++++.+.++++++|++.+++..
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p 125 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGP 125 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCH
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 999999988888899999999999998887664
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-12 Score=128.45 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=85.9
Q ss_pred hhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee
Q 023490 85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (281)
Q Consensus 85 ~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~ 164 (281)
++.++.+. +++| |....+ .++.| ++|||||+|.||+++|+.++.+ |++|+++++... ....+...|+.
T Consensus 235 ~~~~~~~~-l~~g-w~r~~~-~~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~~~-~~~~a~~~g~~- 302 (479)
T 1v8b_A 235 NVYGCRHS-LPDG-LMRATD-FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEIDPI-CAIQAVMEGFN- 302 (479)
T ss_dssp HHHHHHHH-HHHH-HHHHHC-CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSCHH-HHHHHHTTTCE-
T ss_pred chHhHHHH-Hhhh-hhhccc-cccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCChh-hHHHHHHcCCE-
Confidence 34455555 6677 853223 57999 9999999999999999999999 999988887643 22245567776
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcch
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l 216 (281)
..+++|++++||+|++|+. ...+++ +.++.||+|++|+.++-..+
T Consensus 303 ----~~~l~ell~~aDiVi~~~~---t~~lI~~~~l~~MK~gailiNvgrg~~ 348 (479)
T 1v8b_A 303 ----VVTLDEIVDKGDFFITCTG---NVDVIKLEHLLKMKNNAVVGNIGHFDD 348 (479)
T ss_dssp ----ECCHHHHTTTCSEEEECCS---SSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred ----ecCHHHHHhcCCEEEECCC---hhhhcCHHHHhhcCCCcEEEEeCCCCc
Confidence 3589999999999999962 234565 78899999999997654433
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=110.87 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=78.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|||||+|.||.++|++|.+. |++|.++++..++ .+...+.|+.. ..+++|+++ +|+|++++|+...
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRIEA-MTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSSTTT-SHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence 6899999999999999999998 9999999887654 44556678775 568999999 9999999998654
Q ss_pred -HHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 192 -ADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 192 -~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
.++++++.+.++++++|++......
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~ 109 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISD 109 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCH
Confidence 4588899999999999998877664
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=115.30 Aligned_cols=97 Identities=20% Similarity=0.207 Sum_probs=80.6
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcC---CEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~A---DVViL 184 (281)
+++ ++|||||+|+||.++|++|.+. |++|.++++..+ ..+...+.|+.. ..+++|+++++ |+|++
T Consensus 20 m~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi~ 87 (358)
T 4e21_A 20 FQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDLNVN-AVQALEREGIAG----ARSIEEFCAKLVKPRVVWL 87 (358)
T ss_dssp --C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHTTTCBC----CSSHHHHHHHSCSSCEEEE
T ss_pred hcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHCCCEE----eCCHHHHHhcCCCCCEEEE
Confidence 456 8999999999999999999999 999998887643 345556667764 56899999999 99999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
++|+....++++++.+.++++++|++.+....
T Consensus 88 ~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~ 119 (358)
T 4e21_A 88 MVPAAVVDSMLQRMTPLLAANDIVIDGGNSHY 119 (358)
T ss_dssp CSCGGGHHHHHHHHGGGCCTTCEEEECSSCCH
T ss_pred eCCHHHHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 99999556688999999999999998877663
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=111.89 Aligned_cols=99 Identities=21% Similarity=0.200 Sum_probs=80.1
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
.... ++|||||+|.||.++|++|.+. |++|.++++..+ ..+...+.|+.. ..+++|+++++|+|++++
T Consensus 28 ~~~~-~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~v 95 (320)
T 4dll_A 28 DPYA-RKITFLGTGSMGLPMARRLCEA------GYALQVWNRTPA-RAASLAALGATI----HEQARAAARDADIVVSML 95 (320)
T ss_dssp -CCC-SEEEEECCTTTHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHTTTCEE----ESSHHHHHTTCSEEEECC
T ss_pred ccCC-CEEEEECccHHHHHHHHHHHhC------CCeEEEEcCCHH-HHHHHHHCCCEe----eCCHHHHHhcCCEEEEEC
Confidence 3455 8999999999999999999999 999998887643 344555667764 568999999999999999
Q ss_pred CChhH-HHHHH--HHHhcCCCCcEEEEeCCcchh
Q 023490 187 SDAAQ-ADNYE--KIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 187 P~~~~-~~vl~--ei~~~mKpgaILi~aaG~~l~ 217 (281)
|+... ..++. ++++.++++++|++.......
T Consensus 96 p~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~ 129 (320)
T 4dll_A 96 ENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPR 129 (320)
T ss_dssp SSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHH
T ss_pred CCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHH
Confidence 98654 45776 788899999999988776643
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-12 Score=113.93 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=86.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|||||+|+||.++|++|.+. |++|.++++..+ ..+...+.|... ...+++|+++++|+|++++|+...
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADLNPQ-ACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence 7899999999999999999999 999998887643 345555666542 034788999999999999999654
Q ss_pred -HHHH---HHHHhcCCCCcEEEEeCCcchhhhhhcccCC-CCCceEEEeccCCCCh
Q 023490 192 -ADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGP 242 (281)
Q Consensus 192 -~~vl---~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~-~~~i~VIrvmPntpg~ 242 (281)
..++ +++.+.++++++|++.+.......+.....+ ..+..++. +|-..++
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~ 132 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGA 132 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCH
T ss_pred HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCCh
Confidence 4566 5788999999999988776643221100011 23556666 6644443
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-12 Score=107.37 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=87.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-------~~~~~~t~~~~~E~l~~ADVVi 183 (281)
|+|+||| .|.||.++++.|.+. |++|.+++|..++..+...+.+ +. ..+++++++++|+|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~Vi 69 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASIT-----GMKNEDAAEACDIAV 69 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-----EEEHHHHHHHCSEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCC-----hhhHHHHHhcCCEEE
Confidence 5899999 999999999999998 9999888876433222222222 22 246788899999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEE-EeCCcc--------------hhhhhhcccCCCCCceEEEeccCCCChhhH
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL--------------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~--------------l~~l~~~~~~~~~~i~VIrvmPntpg~~vr 245 (281)
+++|+....++++++.+.++ +++|+ ++.|+. ...+++ .++ +..++++||++++....
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~ 141 (212)
T 1jay_A 70 LTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFA 141 (212)
T ss_dssp ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHH
T ss_pred EeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhh
Confidence 99998777778887777774 77766 456676 455654 344 36899999999887764
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-11 Score=106.69 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=76.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
|+|+|||+|+||.++|++|.+. |++|.++++..+ ..+...+.|+.. ..+++|+++++|+|++++|...+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVFPD-ACKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSSTH-HHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 5799999999999999999998 999988887643 344455567764 45888999999999999987654
Q ss_pred -HHHHHH---HHhcCCCCcEEEEeCCcchhhh
Q 023490 192 -ADNYEK---IFSCMKPNSILGLSHGFLLGHL 219 (281)
Q Consensus 192 -~~vl~e---i~~~mKpgaILi~aaG~~l~~l 219 (281)
..++.+ +++.++++++|+...|+.....
T Consensus 70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~ 101 (296)
T 2gf2_A 70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVS 101 (296)
T ss_dssp HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHH
T ss_pred HHHHHhCchhHHhcCCCCCEEEECCCCCHHHH
Confidence 456764 5668899999888888886543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-11 Score=106.20 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=79.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC--------CcCCHHhhcC---cC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--------TLGDIYETIS---GS 179 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~--------t~~~~~E~l~---~A 179 (281)
||+|+|||.|+||.++|..|.+. |++|.+++|..+ ..+...+.|...... ...+.+++.+ ++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQWPA-HIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQV 75 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC------CCcEEEEECCHH-HHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCC
Confidence 47999999999999999999998 999988887643 334444446542100 0113344444 99
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEE-eCCcch-hhhhhcccCCCCCceEE
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSIGLDFPKNIGVI 233 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~-aaG~~l-~~l~~~~~~~~~~i~VI 233 (281)
|+|++++|+....++++++.+.++++++|++ ..|+.. ..+.+ .+++. .|+
T Consensus 76 d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi 127 (316)
T 2ew2_A 76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NIL 127 (316)
T ss_dssp SEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEE
T ss_pred CEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEE
Confidence 9999999998777899999999999998764 578765 44554 44433 455
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=110.23 Aligned_cols=97 Identities=18% Similarity=0.095 Sum_probs=77.2
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++.. ++|||||+|+||.++|++|.+. |++|.+++|..+ ..+...+.|... ..+++|+++++|+|++++
T Consensus 6 ~~~~-~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~v 73 (306)
T 3l6d_A 6 ESFE-FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRSPG-KAAALVAAGAHL----CESVKAALSASPATIFVL 73 (306)
T ss_dssp CCCS-CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHTCEE----CSSHHHHHHHSSEEEECC
T ss_pred ccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEEe
Confidence 3445 8999999999999999999999 999998887643 344455567764 568999999999999999
Q ss_pred CChhH-HHHHH--HHHhcCCCCcEEEEeCCcch
Q 023490 187 SDAAQ-ADNYE--KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 187 P~~~~-~~vl~--ei~~~mKpgaILi~aaG~~l 216 (281)
|+..+ ..++. .+ ..++++++|++.+....
T Consensus 74 p~~~~~~~v~~~~~l-~~~~~g~ivid~st~~~ 105 (306)
T 3l6d_A 74 LDNHATHEVLGMPGV-ARALAHRTIVDYTTNAQ 105 (306)
T ss_dssp SSHHHHHHHHTSTTH-HHHTTTCEEEECCCCCT
T ss_pred CCHHHHHHHhcccch-hhccCCCEEEECCCCCH
Confidence 98764 45775 44 44689999998877664
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=8.8e-12 Score=123.30 Aligned_cols=110 Identities=19% Similarity=0.131 Sum_probs=83.2
Q ss_pred hcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
+.+..+. +++| |....+ .++.| ++|||||+|.||+.+|+.++.+ |++|+++++...+ ...+...|+.
T Consensus 256 ~~~~~~~-l~~g-w~~~~g-~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~~~~-~~~a~~~G~~-- 322 (494)
T 3d64_A 256 LYGCRES-LVDG-IKRATD-VMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEIDPIC-ALQAAMEGYR-- 322 (494)
T ss_dssp HHHHHTT-HHHH-HHHHHC-CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSCHHH-HHHHHTTTCE--
T ss_pred hHhhhhh-hhhh-hhhccc-cccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCChHh-HHHHHHcCCE--
Confidence 3344444 5556 753323 67999 9999999999999999999998 9999988876432 2234556776
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCc
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~ 214 (281)
..+++|++++||+|++++. ...+++ +.++.||+|++|+.++-.
T Consensus 323 ---~~~l~ell~~aDiVi~~~~---t~~lI~~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 323 ---VVTMEYAADKADIFVTATG---NYHVINHDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp ---ECCHHHHTTTCSEEEECSS---SSCSBCHHHHHHCCTTEEEEECSSS
T ss_pred ---eCCHHHHHhcCCEEEECCC---cccccCHHHHhhCCCCcEEEEcCCC
Confidence 3589999999999999983 234665 788999999999965443
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3e-11 Score=118.42 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=75.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhcCc---C
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---S 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~---G~~~~~~t~~~~~E~l~~---A 179 (281)
+.+.- ++|||||+|+||.++|++|.+. |++|.+++|..++..+...+. |+.. ..+++|++++ +
T Consensus 11 ~~~~~-~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~a 79 (480)
T 2zyd_A 11 HHMSK-QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETP 79 (480)
T ss_dssp ----C-BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSS
T ss_pred cccCC-CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCC
Confidence 34555 8999999999999999999999 999999988754333333332 6664 4688888877 9
Q ss_pred CEEEEccCCh-hHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 180 DLVLLLISDA-AQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 180 DVViLavP~~-~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|+|++++|+. ...++++++.+.++++++|++.+.
T Consensus 80 DvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~ 114 (480)
T 2zyd_A 80 RRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN 114 (480)
T ss_dssp CEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCC
Confidence 9999999995 566799999999999999886544
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=105.03 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=72.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec--CCcccHHHHHHCCceecC-------CCcC--CHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR--KGSRSFAEARAAGFTEEN-------GTLG--DIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r--~~~~s~~~A~~~G~~~~~-------~t~~--~~~E~l~~AD 180 (281)
|+|+|||+|+||.++|..|.+. |++|.+++| ..+ ..+...+.|..... .... ++.|+++++|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D 73 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTE-ILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAE 73 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHH-HHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCHH-HHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCC
Confidence 5899999999999999999998 999988887 432 33444444431000 0123 5678899999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEe-CCc
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGF 214 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~a-aG~ 214 (281)
+|++++|+....++++++.+ ++++++|++. .|+
T Consensus 74 ~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 74 VVLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp EEEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSE
T ss_pred EEEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcC
Confidence 99999999988889999989 9999987765 488
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-11 Score=111.89 Aligned_cols=118 Identities=20% Similarity=0.205 Sum_probs=82.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC--------------ceecCCCcCCHHhhcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETIS 177 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G--------------~~~~~~t~~~~~E~l~ 177 (281)
++|+|||+|+||.++|.+|.+. |++|.+++|..++ .+...+.+ +.. ..+++|+++
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 84 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEEE-VRLVNEKRENVLFLKGVQLASNITF----TSDVEKAYN 84 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTT------EEEEEEECSCHHH-HHHHHHHTBCTTTSTTCBCCTTEEE----ESCHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHcCcccccccccccccceee----eCCHHHHHc
Confidence 3899999999999999999988 9999888876432 33333322 221 347888899
Q ss_pred cCCEEEEccCChhHHHHHHH----HHhcCCC-CcEEEEe-CCcchhhhh---h-cccCCCCCceEEEeccCCC
Q 023490 178 GSDLVLLLISDAAQADNYEK----IFSCMKP-NSILGLS-HGFLLGHLQ---S-IGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~e----i~~~mKp-gaILi~a-aG~~l~~l~---~-~~~~~~~~i~VIrvmPntp 240 (281)
++|+||+++|++...+++.+ +.+.+++ +++|+.. .|+.....+ + ....++.....++.+|+++
T Consensus 85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~ 157 (366)
T 1evy_A 85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFA 157 (366)
T ss_dssp TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCH
T ss_pred CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChH
Confidence 99999999998777778887 8888988 8877654 487653211 1 0012232223578888765
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=102.52 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=70.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~-~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|+|+|||+|+||.++|++|.+. |++|.++++. ..+..+...+.|+. .+++|+++++|+|++++|+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence 5899999999999999999998 9998876552 22233344445654 267788999999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 191 QADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
..+.+.++.+.+++ +|++..++..
T Consensus 69 ~~~~~~~~~~~~~~--~vi~~s~~~~ 92 (264)
T 1i36_A 69 ALGAARRAGRHVRG--IYVDINNISP 92 (264)
T ss_dssp HHHHHHHHHTTCCS--EEEECSCCCH
T ss_pred HHHHHHHHHHhcCc--EEEEccCCCH
Confidence 77766788888887 7777777653
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-10 Score=113.26 Aligned_cols=121 Identities=16% Similarity=0.210 Sum_probs=88.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----------~G~~~~~---------~t~~ 170 (281)
+++|||||.|+||.++|+.+... |++|+++++..+ ..+.+.+ .|...+. ....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH------GHQVLLYDISAE-ALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT 77 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT------TCCEEEECSCHH-HHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence 37999999999999999999999 999998887643 2333322 2321000 0023
Q ss_pred CHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+. +.+++||+||+++|..... .++.++.+.++++++| +..+++.+..+.. .++....++..||+.|-+
T Consensus 78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~ 148 (483)
T 3mog_A 78 DI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAP 148 (483)
T ss_dssp CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTT
T ss_pred CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhh
Confidence 45 4689999999999997543 5888999999999998 5689999887765 334445799999988654
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.2e-10 Score=110.43 Aligned_cols=122 Identities=16% Similarity=0.250 Sum_probs=88.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-------HHHHHHCCceecC---------CCcCCHHh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------FAEARAAGFTEEN---------GTLGDIYE 174 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-------~~~A~~~G~~~~~---------~t~~~~~E 174 (281)
+++|+|||.|.||.++|+.+... |++|+++++..++. .+.+.+.|...+. ....++ +
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~ 126 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA------GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-H 126 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-G
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-H
Confidence 58999999999999999999999 99999998765421 1223344431000 012355 4
Q ss_pred hcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
.+++||+||+++|..... .++.++.+.++++++|+ .++++.+..+.+ .++....++..||..|-+
T Consensus 127 al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~---~~~~p~r~iG~HffnPv~ 194 (460)
T 3k6j_A 127 KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS---VLRDPSNLVGIHFFNPAN 194 (460)
T ss_dssp GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHT---TSSSGGGEEEEECCSSTT
T ss_pred HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHH---hccCCcceEEEEecchhh
Confidence 799999999999986543 47889999999999985 567888877765 333345788888876543
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-11 Score=105.78 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=81.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|+|||+|.||.++|+.|.. |++|.++++..++ .+...+.|+.. .. ++++++++|+|++++|...
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~~~~-~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRTFEK-ALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTR 67 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSSTHH-HHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCCHHH-HHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChH
Confidence 5789999999999999999863 6788888876543 33344445543 23 6788899999999999876
Q ss_pred -HHHHHHHHHhcCCCCcEEEEeCCcch---hhhhhcccCCC-CCceEEEeccCCCCh
Q 023490 191 -QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFP-KNIGVIAVCPKGMGP 242 (281)
Q Consensus 191 -~~~vl~ei~~~mKpgaILi~aaG~~l---~~l~~~~~~~~-~~i~VIrvmPntpg~ 242 (281)
...+++++.+.++++++|++...... ..+.+ .++ .+..++.. |..+++
T Consensus 68 ~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~~-p~~~~~ 120 (289)
T 2cvz_A 68 EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAE---RLREKGVTYLDA-PVSGGT 120 (289)
T ss_dssp HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEEEC-CEESHH
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEe-cCCCCh
Confidence 45578888899999998887655442 23332 222 35677775 865554
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-11 Score=102.47 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=62.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.++.+ ++|+|||+|+||.++|+.|.+. |++|.+++|... .++++|+|+++
T Consensus 15 ~~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~~-----------------------~~~~aD~vi~a 64 (209)
T 2raf_A 15 LYFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKDQ-----------------------ATTLGEIVIMA 64 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCC-----------------------CSSCCSEEEEC
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-----------------------HhccCCEEEEc
Confidence 45777 9999999999999999999998 999988876421 36789999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEE-eCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGL-SHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~-aaG~~ 215 (281)
+|+....++++++.+.++ +++|++ +.|+.
T Consensus 65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 65 VPYPALAALAKQYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp SCHHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred CCcHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence 997777778888888888 888764 56665
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.6e-11 Score=105.97 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=73.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|+|||+|.||..+++.|... |++|.++++... ..+...+.|+.. ..+++++++++|+|++++|...+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRNPE-AIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 5899999999999999999998 999888877643 344455567764 45888999999999999997654
Q ss_pred -HHHH---HHHHhcCCCCcEEEEeCCc
Q 023490 192 -ADNY---EKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 192 -~~vl---~ei~~~mKpgaILi~aaG~ 214 (281)
..++ +++.+.++++++|++....
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~ 101 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSI 101 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCC
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCC
Confidence 4577 5688899999988765443
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-11 Score=116.43 Aligned_cols=128 Identities=23% Similarity=0.172 Sum_probs=97.9
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
.+.+..|.++-|....++.+..+..+. |-.... + .+|.| |+++|||+|.||+.+|+.++.+ |++|+++++
T Consensus 209 ~PvinVnds~tK~~fDn~yG~~eslvd-gI~Rat-g-~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~ 278 (464)
T 3n58_A 209 FPAINVNDSVTKSKFDNKYGCKESLVD-GIRRGT-D-VMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEV 278 (464)
T ss_dssp SCEEECTTSHHHHTTHHHHHHHHHHHH-HHHHHH-C-CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS
T ss_pred CCEEeeccHhhhhhhhhhhcchHHHHH-HHHHhc-C-CcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeC
Confidence 344778899999888888887777442 111111 2 57999 9999999999999999999999 999998876
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcc
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~ 215 (281)
.+. ....+...|+. ..+++|++++||+|++++.. .++++ +.+..||+|++|+.++-+.
T Consensus 279 dp~-~a~~A~~~G~~-----vv~LeElL~~ADIVv~atgt---~~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 279 DPI-CALQAAMDGFE-----VVTLDDAASTADIVVTTTGN---KDVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp SHH-HHHHHHHTTCE-----ECCHHHHGGGCSEEEECCSS---SSSBCHHHHHHSCTTEEEEECSSST
T ss_pred Ccc-hhhHHHhcCce-----eccHHHHHhhCCEEEECCCC---ccccCHHHHhcCCCCeEEEEcCCCC
Confidence 533 23445667876 35899999999999998653 23665 8899999999999765544
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.9e-11 Score=107.01 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=73.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+++| ++|+|||+|.||+++|+.++.+ |++|+++++...+ .+.+.+.|+... ...+++++++++|+|++|
T Consensus 153 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 222 (300)
T 2rir_A 153 YTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSSAH-LARITEMGLVPF--HTDELKEHVKDIDICINT 222 (300)
T ss_dssp SCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHHH-HHHHHHTTCEEE--EGGGHHHHSTTCSEEEEC
T ss_pred CCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHCCCeEE--chhhHHHHhhCCCEEEEC
Confidence 68999 9999999999999999999999 9999998886432 233445565420 024788999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
+|+. +++ +.++.||++++|++.+
T Consensus 223 ~p~~----~i~~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 223 IPSM----ILNQTVLSSMTPKTLILDLA 246 (300)
T ss_dssp CSSC----CBCHHHHTTSCTTCEEEECS
T ss_pred CChh----hhCHHHHHhCCCCCEEEEEe
Confidence 9983 333 5778999999998654
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=107.49 Aligned_cols=96 Identities=14% Similarity=0.179 Sum_probs=73.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC-------cEEEEEecCCcc----cHHHHHHC--------------Cceec
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAA--------------GFTEE 165 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-------~~Viig~r~~~~----s~~~A~~~--------------G~~~~ 165 (281)
|++|+|||.|+||.++|..|.+. | ++|.+++|..+. ..+...+. ++..
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~- 93 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA- 93 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE-
T ss_pred CCEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE-
Confidence 47899999999999999999988 8 889888876540 22222221 1221
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHh----cCCCCcEEEE-eCCcch
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGL-SHGFLL 216 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~----~mKpgaILi~-aaG~~l 216 (281)
..+++|+++++|+||+++|++...+++.++.+ .++++++|+. +.|+..
T Consensus 94 ---~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~ 146 (375)
T 1yj8_A 94 ---HSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIV 146 (375)
T ss_dssp ---ESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred ---ECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence 34677889999999999999777789999988 8999998765 457654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=106.74 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=73.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.++.| ++|+|||+|.||+++|+.++++ |++|+++++...+ .+.+.+.|+... ...+++++++++|+|++|
T Consensus 151 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 220 (293)
T 3d4o_A 151 FTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARESDL-LARIAEMGMEPF--HISKAAQELRDVDVCINT 220 (293)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHHH-HHHHHHTTSEEE--EGGGHHHHTTTCSEEEEC
T ss_pred CCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHCCCeec--ChhhHHHHhcCCCEEEEC
Confidence 57999 9999999999999999999999 9999988876432 334455675420 024688999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
+|+. +++ +.++.||++++|++.+
T Consensus 221 ~p~~----~i~~~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 221 IPAL----VVTANVLAEMPSHTFVIDLA 244 (293)
T ss_dssp CSSC----CBCHHHHHHSCTTCEEEECS
T ss_pred CChH----HhCHHHHHhcCCCCEEEEec
Confidence 9984 332 5677899999998765
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=104.95 Aligned_cols=115 Identities=10% Similarity=0.091 Sum_probs=83.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC-------cEEEEEecCCcc----cHHHHHHCC--------------ceecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEEN 166 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-------~~Viig~r~~~~----s~~~A~~~G--------------~~~~~ 166 (281)
++|+|||.|+||.++|..|.+. | ++|.+++|.... ..+...+.+ +..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-- 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence 7999999999999999999988 8 889888876540 222222211 221
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcch---------hhhhhcccCCCCCceEEEec
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL---------GHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~l---------~~l~~~~~~~~~~i~VIrvm 236 (281)
..+++++++++|+|++++|++...++++++.+.++++++|+ ++.|+.+ ..+.. .++. ...++.+
T Consensus 81 --~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~~-~~~v~~g 154 (354)
T 1x0v_A 81 --VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLGI-PMSVLMG 154 (354)
T ss_dssp --ESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHTC-CEEEEEC
T ss_pred --EcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcCC-CEEEEEC
Confidence 34778889999999999999877889999999999999776 4567753 11222 1231 2467888
Q ss_pred cCCC
Q 023490 237 PKGM 240 (281)
Q Consensus 237 Pntp 240 (281)
|+++
T Consensus 155 p~~a 158 (354)
T 1x0v_A 155 ANIA 158 (354)
T ss_dssp SCCH
T ss_pred CCcH
Confidence 8875
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=107.81 Aligned_cols=119 Identities=17% Similarity=0.238 Sum_probs=86.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec---C-------CCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~---~-------~t~~~~~E~l~~ADV 181 (281)
++|+|||.|+||.++|..|.+. |++|.+++|..+ ..+...+.+.... + ....+++|+++++|+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~~~-~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYESD-HVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSCHH-HHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 7899999999999999999999 999998887643 2333333332100 0 013578899999999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcchh------hhhhcccCCCCCceEEEeccCCC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLG------HLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~l~------~l~~~~~~~~~~i~VIrvmPntp 240 (281)
|++++|.+...++++++.++++++++|+ ++.|+... .+++ .+|...-.+...|+..
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a 165 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLA 165 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCH
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHH
Confidence 9999999887889999999999999765 56887754 3433 3343223567777654
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=3e-10 Score=111.92 Aligned_cols=93 Identities=19% Similarity=0.167 Sum_probs=76.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----CCceecCCCcCCHHhhcCc---CCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETISG---SDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----~G~~~~~~t~~~~~E~l~~---ADVVi 183 (281)
++|||||+|+||.++|++|.+. |++|.+++|..++ .+...+ .|+.. ..+++|++++ +|+||
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQSK-VDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVM 79 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSHH-HHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEE
Confidence 7899999999999999999999 9999999887654 334444 46653 4588888877 99999
Q ss_pred EccCCh-hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 184 LavP~~-~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+++|+. ...++++++.+.+++|++|++.+...
T Consensus 80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 999995 55668999999999999998765544
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=105.58 Aligned_cols=114 Identities=18% Similarity=0.112 Sum_probs=78.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-----------ceecCCCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----------FTEENGTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-----------~~~~~~t~~~~~E~l~~AD 180 (281)
++|+|||.|+||.++|.+|.+. |++|.+++|..++ .+...+.| +.. ..++++ ++++|
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD 82 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKEI-VDLINVSHTSPYVEESKITVRA----TNDLEE-IKKED 82 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence 8999999999999999999999 9999988886433 23333334 232 346778 89999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEE-eCCcchhhhh---hc-ccCCCCCceEEEeccCCCC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQ---SI-GLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~-aaG~~l~~l~---~~-~~~~~~~i~VIrvmPntpg 241 (281)
+||+++|++...+++.++.+ ++++|+. +.|+.....+ +. ...++ ....++.+||++.
T Consensus 83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~ 144 (335)
T 1z82_A 83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAE 144 (335)
T ss_dssp EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHH
T ss_pred EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHH
Confidence 99999998776677766544 6777664 5587653211 00 00223 2346789998753
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4e-10 Score=111.05 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=75.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcC---cCCEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETIS---GSDLV 182 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-----~~~~~~t~~~~~E~l~---~ADVV 182 (281)
+++|||||+|+||.++|++|.+. |++|.+++|..++ .+...+.+ +.. ..+++|+++ ++|+|
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~~~-~~~l~~~g~~g~~i~~----~~s~~e~v~~l~~aDvV 72 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVVG----AQSLKEMVSKLKKPRRI 72 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEE----CSSHHHHHHTBCSSCEE
T ss_pred CCEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhcccCCCceec----cCCHHHHHhhccCCCEE
Confidence 37899999999999999999999 9999999887643 33444432 221 357888876 59999
Q ss_pred EEccCChh-HHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 183 LLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 183 iLavP~~~-~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
++++|+.. ..++++++.+.|++|++|++.+....
T Consensus 73 il~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~ 107 (484)
T 4gwg_A 73 ILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEY 107 (484)
T ss_dssp EECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred EEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCc
Confidence 99999964 45688999999999999998776553
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=102.50 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=72.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|+|||+|.||..+|+.|.+. |++|.+++ ..++ .+...+.|+.. ..+++|+++++|+|++++|...
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~~~~-~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~ 70 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA------GHQLHVTT-IGPV-ADELLSLGAVN----VETARQVTEFADIIFIMVPDTP 70 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT------TCEEEECC-SSCC-CHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCEEEEEc-CHHH-HHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHH
Confidence 47999999999999999999998 99998777 5433 34444557653 4588899999999999999877
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeCCc
Q 023490 191 Q-ADNYE---KIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 191 ~-~~vl~---ei~~~mKpgaILi~aaG~ 214 (281)
+ ..++. ++.+.++++++|++....
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~ 98 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSI 98 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCC
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCC
Confidence 5 45776 677889999988765443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=110.42 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=84.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhcCc---CCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~---G~~~~~~t~~~~~E~l~~---ADVViLa 185 (281)
++|||||+|+||.++|++|.+. |++|.+++|..++..+...+. |+.. ..+++|++++ +|+|+++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVila 75 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLM 75 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEE
Confidence 6899999999999999999998 999988887654333333332 6653 4588888776 9999999
Q ss_pred cCChh-HHHHHHHHHhcCCCCcEEEEeC-Ccch--hhhhhcccCCC-CCceEEEeccCCCCh
Q 023490 186 ISDAA-QADNYEKIFSCMKPNSILGLSH-GFLL--GHLQSIGLDFP-KNIGVIAVCPKGMGP 242 (281)
Q Consensus 186 vP~~~-~~~vl~ei~~~mKpgaILi~aa-G~~l--~~l~~~~~~~~-~~i~VIrvmPntpg~ 242 (281)
+|+.. ...+++++.+.+++|++|++.. |... ..+.+ .++ .++.++ .+|...++
T Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~---~l~~~g~~~v-~~pv~gg~ 133 (474)
T 2iz1_A 76 VQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA---ELADSGINFI-GTGVSGGE 133 (474)
T ss_dssp CCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HTTTSSCEEE-EEEECSHH
T ss_pred ccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH---HHHHCCCeEE-CCCCCCCh
Confidence 99964 5568889999999999888654 4322 23332 222 356666 45765443
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-10 Score=103.98 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=78.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-------G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|+|||||+|.||.++|+++. . |++|+++++..+ ..+.+.+. ++.. ..++++ +++||+||.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~~~-~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVSEK-ALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME 79 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCHH-HHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECCHH-HHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence 99999999999999999999 9 999999988743 34445544 4543 346666 899999999
Q ss_pred ccCChhHH-H-HHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCC
Q 023490 185 LISDAAQA-D-NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKG 239 (281)
Q Consensus 185 avP~~~~~-~-vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPnt 239 (281)
++|..... + ++.++.+ + |+++|+ .++++.+..+.. .......++.++|=-
T Consensus 80 avpe~~~vk~~l~~~l~~-~-~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~ 132 (293)
T 1zej_A 80 AVFEDLNTKVEVLREVER-L-TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMN 132 (293)
T ss_dssp CCCSCHHHHHHHHHHHHT-T-CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECS
T ss_pred cCcCCHHHHHHHHHHHhc-C-CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecC
Confidence 99997764 3 5566544 4 999885 577888776654 222223455555533
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=101.14 Aligned_cols=110 Identities=21% Similarity=0.228 Sum_probs=78.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|+|||+|+||.++++.|.+. |++|.+++|..+ ..+...+.|+.. .+.+++++++|+|++++|+...
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~~~-~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~ 96 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRNPK-RTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY 96 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSHH-HHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence 7899999999999999999998 999988877633 233333346553 2788899999999999998655
Q ss_pred HHHHHHHHhcCCCCcEEE-EeCCcchhhhh----------hcccCCCCCceEEEeccCCC
Q 023490 192 ADNYEKIFSCMKPNSILG-LSHGFLLGHLQ----------SIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaILi-~aaG~~l~~l~----------~~~~~~~~~i~VIrvmPntp 240 (281)
..+++ +.+.+ ++++|+ ++.|+....++ . .++ +.+|++.| |+.
T Consensus 97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~---~l~-~~~vv~~~-n~~ 149 (215)
T 2vns_A 97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLAS---LFP-TCTVVKAF-NVI 149 (215)
T ss_dssp GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHH---HCT-TSEEEEEC-TTB
T ss_pred HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHH---HCC-CCeEEecc-ccc
Confidence 45554 43444 788776 56776654332 3 345 45788887 554
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.4e-10 Score=99.57 Aligned_cols=92 Identities=20% Similarity=0.198 Sum_probs=72.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|+|||+|.||.++++.|... |++|.++++..+ ..+...+.|+.. ..+.+|+++++|+|++++|...+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~~~-~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDLMEA-NVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 7899999999999999999998 999988877643 333444457664 45888999999999999987665
Q ss_pred -HHHHH---HHHhcCCCCcEEEEe-CCc
Q 023490 192 -ADNYE---KIFSCMKPNSILGLS-HGF 214 (281)
Q Consensus 192 -~~vl~---ei~~~mKpgaILi~a-aG~ 214 (281)
..++. ++.+.++++++|+.. .|.
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~ 101 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVS 101 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence 45774 788889999988754 444
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-10 Score=111.09 Aligned_cols=90 Identities=20% Similarity=0.205 Sum_probs=72.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----CCceecCCCcCCHHhhc---CcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETI---SGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----~G~~~~~~t~~~~~E~l---~~ADVVi 183 (281)
++|||||+|.||.++|++|.+. |++|.+++|..++ .+...+ .|+.. ..+++|++ +++|+|+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence 5899999999999999999998 9999988887543 333444 45553 45788886 4899999
Q ss_pred EccCCh-hHHHHHHHHHhcCCCCcEEEEeC
Q 023490 184 LLISDA-AQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 184 LavP~~-~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++|+. ....+++++.+.++++++|++..
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s 101 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGG 101 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECC
Confidence 999996 45668889999999999888654
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.8e-10 Score=101.50 Aligned_cols=94 Identities=20% Similarity=0.161 Sum_probs=74.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC-h
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-A 189 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~-~ 189 (281)
+++|+|||+|.||.++|+.|... |++|.++++..++ .+...+.|+.. ..+.+++++++|+|++++|. .
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~~~~-~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~ 98 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRTAEK-CDLFIQEGARL----GRTPAEVVSTCDITFACVSDPK 98 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT------TCCEEEECSSGGG-GHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999988 9999888876543 34455567664 45788999999999999995 4
Q ss_pred hHHHHHHH---HHhcCCCCcEEEEeCCcc
Q 023490 190 AQADNYEK---IFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 190 ~~~~vl~e---i~~~mKpgaILi~aaG~~ 215 (281)
....++.+ +++.++++++|++.....
T Consensus 99 ~~~~v~~~~~~~~~~l~~~~~vv~~s~~~ 127 (316)
T 2uyy_A 99 AAKDLVLGPSGVLQGIRPGKCYVDMSTVD 127 (316)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred HHHHHHcCchhHhhcCCCCCEEEECCCCC
Confidence 45557764 457899999988776655
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-09 Score=99.49 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=74.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecC----------CCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~----------~t~~~~~E~l~~AD 180 (281)
++|+|||+|.||..+|..|.+. |++|.+++|..++ .+...+. ++...+ ....+++++++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDAQR-IKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence 7899999999999999999998 9999888776432 3333333 332110 01357888899999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
+|++++|.....++++++.+.++++++|++..|+
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~ 111 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 111 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence 9999999999888999999999999988777663
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-10 Score=103.73 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=83.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHH-CCceecC--CC-------cCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEEN--GT-------LGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~-~G~~~~~--~t-------~~~~~E~l~~AD 180 (281)
|+|+|||+|+||.++|..|.+... ..-| ++|.+++| . +..+...+ .|+.... +. ..+..+.++++|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~-~~~g~~~V~~~~r-~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAA-ATDGLLEVSWIAR-G-AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHH-HTTSSEEEEEECC-H-HHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCcc-ccCCCCCEEEEEc-H-HHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 689999999999999999975400 0004 78888877 3 33444455 6776421 00 002345678999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcch-hhhhhcccCCCCCceEEEeccCCC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~l-~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
+||+++|+....++++++.+.++++++|+ +..|+.. ..+.+ .++.. .+++.+|+.+
T Consensus 86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~ 143 (317)
T 2qyt_A 86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYIS 143 (317)
T ss_dssp EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEE
T ss_pred EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEE
Confidence 99999999998889999999998888765 4678775 45554 45543 5666666544
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.7e-10 Score=108.91 Aligned_cols=123 Identities=19% Similarity=0.184 Sum_probs=87.6
Q ss_pred cccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 72 ~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+.-|.++-|....++.+..+..+. |-.. . .-.+|.| ++|+|||+|.||+++|+.|+.+ |++|+++++..
T Consensus 176 invndsvtk~~~Dn~~Gt~~slld-gi~r-a-tg~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D~~p- 244 (436)
T 3h9u_A 176 MNVNDSVTKSKFDNLYGCRESLVD-GIKR-A-TDVMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTEVDP- 244 (436)
T ss_dssp EECTTSHHHHTTHHHHHHHHHHHH-HHHH-H-HCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-
T ss_pred EeechhhhhhhhhccccchHHHHH-HHHH-h-cCCcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCh-
Confidence 444556655545555555444222 1100 1 1267899 9999999999999999999999 99998887653
Q ss_pred ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCC
Q 023490 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHG 213 (281)
Q Consensus 152 ~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG 213 (281)
.....+...|+. ..+++|++++||+|+++.... .+++ +.++.||+|++|+.++-
T Consensus 245 ~~a~~A~~~G~~-----~~sL~eal~~ADVVilt~gt~---~iI~~e~l~~MK~gAIVINvgR 299 (436)
T 3h9u_A 245 INALQAAMEGYQ-----VLLVEDVVEEAHIFVTTTGND---DIITSEHFPRMRDDAIVCNIGH 299 (436)
T ss_dssp HHHHHHHHTTCE-----ECCHHHHTTTCSEEEECSSCS---CSBCTTTGGGCCTTEEEEECSS
T ss_pred hhhHHHHHhCCe-----ecCHHHHHhhCCEEEECCCCc---CccCHHHHhhcCCCcEEEEeCC
Confidence 233456678886 358999999999999865432 2565 78899999999986543
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=106.84 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=72.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhcC---cCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETIS---GSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-------~~~~~~t~~~~~E~l~---~ADV 181 (281)
|+|||||+|.||.++|++|.+. |++|.+++|..++..+...+.| +.. ..+++|+++ ++|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence 5799999999999999999998 9999988886543333333445 442 457888877 4999
Q ss_pred EEEccCCh-hHHHHHHHHHhcCCCCcEEEEeC-Cc
Q 023490 182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GF 214 (281)
Q Consensus 182 ViLavP~~-~~~~vl~ei~~~mKpgaILi~aa-G~ 214 (281)
|++++|+. ...++++++.+.++++++|++.. |.
T Consensus 72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 99999996 45668889999999999888654 44
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.3e-10 Score=100.82 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=73.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|+|||+|+||.++|+.|++. |++|..+++. ++ ++++| +|++|+...
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~-----------------------~~-~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP-----------------------ED-IRDFE--LVVIDAHGV 54 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG-----------------------GG-GGGCS--EEEECSSCH
T ss_pred cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH-----------------------HH-hccCC--EEEEcHHHH
Confidence 7999999999999999999999 9988766541 12 56799 999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEeCC-cchhhhhhcccCCCCCceEEEeccC
Q 023490 192 ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaILi~aaG-~~l~~l~~~~~~~~~~i~VIrvmPn 238 (281)
.+++.++.+.++++++|+++.| .+...++. ..+.+..++..||-
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HPm 99 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHPI 99 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeeeC
Confidence 8899999999999999998655 45444443 11345689999995
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-10 Score=110.43 Aligned_cols=127 Identities=22% Similarity=0.193 Sum_probs=94.7
Q ss_pred cccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 70 FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 70 ~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+.+..|.++-|....++.+..+..+. |-... .-..+.| ++++|||+|.||+.+|+.|+.+ |++|+++++.
T Consensus 183 Pvi~vnds~tK~~fDn~yGt~~s~~~-gi~ra--t~~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~d 252 (435)
T 3gvp_A 183 PAMNVNDSVTKQKFDNLYCCRESILD-GLKRT--TDMMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEID 252 (435)
T ss_dssp CEEECTTCHHHHHHHTHHHHHHHHHH-HHHHH--HCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC
T ss_pred CEEEecchhhhhhhhhhhhhHHHHHH-HHHHh--hCceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeCC
Confidence 33677888888877777776666332 21111 1257899 9999999999999999999999 9999888765
Q ss_pred CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCcc
Q 023490 150 GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 150 ~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~~ 215 (281)
+. ....+...|+. ..+++|+++++|+|+++ +. ..++++ +.+..||+|++|+.++-+.
T Consensus 253 p~-ra~~A~~~G~~-----v~~Leeal~~ADIVi~a-tg--t~~lI~~e~l~~MK~gailINvgrg~ 310 (435)
T 3gvp_A 253 PI-CALQACMDGFR-----LVKLNEVIRQVDIVITC-TG--NKNVVTREHLDRMKNSCIVCNMGHSN 310 (435)
T ss_dssp HH-HHHHHHHTTCE-----ECCHHHHTTTCSEEEEC-SS--CSCSBCHHHHHHSCTTEEEEECSSTT
T ss_pred hh-hhHHHHHcCCE-----eccHHHHHhcCCEEEEC-CC--CcccCCHHHHHhcCCCcEEEEecCCC
Confidence 43 23456677876 35899999999999996 32 234676 8899999999998654333
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-09 Score=103.28 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=73.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-------------------CC-ceecCCCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-------------------~G-~~~~~~t~~~ 171 (281)
|+|+|||+|.||.++|..|.+. |++|+++++...+ .+...+ .+ +.. ..+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D~~~~~-v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~----t~d 71 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL------GANVRCIDTDRNK-IEQLNSGTIPIYEPGLEKMIARNVKAGRLRF----GTE 71 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE----ESC
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CCEEEEEECCHHH-HHHHHcCCCcccCCCHHHHHHhhcccCcEEE----ECC
Confidence 6999999999999999999999 9999888776432 222222 12 222 357
Q ss_pred HHhhcCcCCEEEEccCCh----------hHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 172 IYETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~----------~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
+++++++||+||+++|.. ....+++++.++++++++|++.+++..
T Consensus 72 ~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~p 126 (450)
T 3gg2_A 72 IEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPV 126 (450)
T ss_dssp HHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCT
T ss_pred HHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCC
Confidence 889999999999999976 556688899999999999988776553
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-10 Score=104.56 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=61.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEE-EEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~V-iig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
++|||||+|+||.++++.|... ++| .++++..++..+.+.+.|. . ..+++++++++|+|++++|++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~~ 70 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDRY 70 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChHH
Confidence 6899999999999999988642 456 3666654332233345565 2 4577788999999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-CCcchhhhhh
Q 023490 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQS 221 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~a-aG~~l~~l~~ 221 (281)
..+++.++. +++++|+.. +++....++.
T Consensus 71 ~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~ 99 (276)
T 2i76_A 71 IKTVANHLN---LGDAVLVHCSGFLSSEIFKK 99 (276)
T ss_dssp HHHHHTTTC---CSSCCEEECCSSSCGGGGCS
T ss_pred HHHHHHHhc---cCCCEEEECCCCCcHHHHHH
Confidence 766766543 678877755 4666665553
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=96.34 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=72.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC---Cc--eecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~---G~--~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|+|+|||.|+||.++|..|.+. |++|.+++|...+..+ .... |. .. .-.. +..+.++++|+|++++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~-~~~~-~~~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNE-SLTA-NDPDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEE-EEEE-SCHHHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccceee-EEEEcCCCceeee-eeee-cCccccCCCCEEEEEe
Confidence 5899999999999999999998 9999988876532111 1111 11 00 0012 2346788999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE-EeCCcch-hhhhh
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS 221 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi-~aaG~~l-~~l~~ 221 (281)
|+....++++++.+.++++++|+ +..|+.. ..+.+
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~ 108 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN 108 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH
Confidence 99988889999999999998765 5777764 34443
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-09 Score=96.25 Aligned_cols=111 Identities=22% Similarity=0.221 Sum_probs=82.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC--CC--------cCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--GT--------LGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~--~t--------~~~~~E~l~~ADV 181 (281)
++|+|||.|+||.++|..|.+. |.+|.++.|.. .+..++.|+..+. +. ..+.+ .++.+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCE
Confidence 6899999999999999999998 99999888863 3455567764321 10 12444 4789999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEE-EEeCCcc-hhhhhhcccCCCCCceEEEec
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSIGLDFPKNIGVIAVC 236 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~-l~~l~~~~~~~~~~i~VIrvm 236 (281)
|++++|.....++++++.+.++++++| ++..|+. .+.+++ .+|.+ +|++.+
T Consensus 73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~~-~v~~~~ 125 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGAE-RIIGGV 125 (312)
T ss_dssp EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCGG-GEEEEE
T ss_pred EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEE
Confidence 999999999889999999999999865 4789986 455655 44432 444443
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.4e-09 Score=96.01 Aligned_cols=101 Identities=23% Similarity=0.245 Sum_probs=78.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC---C--------CcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~---~--------t~~~~~E~l~~AD 180 (281)
++|+|||.|.||.++|..|.+. |++|.+++|.. .+..++.|+.... + ...+.+++.+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999999999999999998 99999888864 2444555653211 0 1245667666999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEE-EEeCCcc-hhhhhh
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQS 221 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~-l~~l~~ 221 (281)
+|++++|.....++++++.+.++++++| .+..|+. .+.+++
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~ 116 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA 116 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH
Confidence 9999999999888999999999998865 5789987 455554
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-09 Score=107.54 Aligned_cols=119 Identities=11% Similarity=0.095 Sum_probs=83.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCCceec---------CCCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE---------NGTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~~~---------~~t~~ 170 (281)
+++|+|||.|.||.++|..+... |++|+++++..+. .+.+ .+.|...+ -....
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~~-~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 386 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEHG-IEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL 386 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHHH-HHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred CCEEEEECCChhhHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEEC
Confidence 58999999999999999999999 9999988876432 2221 22332100 00023
Q ss_pred CHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
++ +.+++||+||+++|..... .++.++.+.++++++|+ .++++.+..+.. .+...-.++..||..|
T Consensus 387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P 455 (715)
T 1wdk_A 387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNP 455 (715)
T ss_dssp SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSS
T ss_pred CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCC
Confidence 45 6789999999999987643 47788999999999886 567887776654 2222235777776544
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=94.25 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=76.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC---------CCcCCHHhhcCc
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GTLGDIYETISG 178 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~---------~t~~~~~E~l~~ 178 (281)
+.- ++|+|||.|.||.++|..|.+. |++|.++ ++. +..+...+.|..... ....+.+ .+++
T Consensus 17 ~~~-~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~~-~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (318)
T 3hwr_A 17 FQG-MKVAIMGAGAVGCYYGGMLARA------GHEVILI-ARP-QHVQAIEATGLRLETQSFDEQVKVSASSDPS-AVQG 86 (318)
T ss_dssp ----CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CCH-HHHHHHHHHCEEEECSSCEEEECCEEESCGG-GGTT
T ss_pred ccC-CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-EcH-hHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH-HcCC
Confidence 344 9999999999999999999998 9999888 543 334445555644210 0013444 4689
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEE-EEeCCcch-hhhhh
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQS 221 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaIL-i~aaG~~l-~~l~~ 221 (281)
+|+|++++|.....++++++.+.++++++| .+..|+.. ..+.+
T Consensus 87 ~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~ 131 (318)
T 3hwr_A 87 ADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRS 131 (318)
T ss_dssp CSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHH
T ss_pred CCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHH
Confidence 999999999998888999999999999865 47899986 44544
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-08 Score=97.82 Aligned_cols=117 Identities=16% Similarity=0.198 Sum_probs=79.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----------CCceec-------CCCcCCH
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI 172 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----------~G~~~~-------~~t~~~~ 172 (281)
+++|+|||.|.||.++|..+... |++|+++++..+ ..+.+.+ .|.... .....+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESDPK-QLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSHH-HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 58999999999999999999998 999988877643 2222221 111000 0002355
Q ss_pred HhhcCcCCEEEEccCChhH--HHHHHHHHhcCCCCcEEEE-eCCcchhhhhhcccCCCCCceEEEeccC
Q 023490 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~--~~vl~ei~~~mKpgaILi~-aaG~~l~~l~~~~~~~~~~i~VIrvmPn 238 (281)
+.+++||+||+++|.... ..++.++.+.++++++|+. ..++.+..+.. .+.....++..||-
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~ 174 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFF 174 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEEC
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecC
Confidence 578999999999998653 3477888899999998864 45666666554 22222356666654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.83 E-value=6.3e-08 Score=76.25 Aligned_cols=98 Identities=13% Similarity=0.033 Sum_probs=67.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCHHh----hcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYE----TISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~G~~~~~~t~~~~~E----~l~~ADVViLav 186 (281)
|+|.|||+|.+|..+++.|.+. |++|++.++.... .+... +.++....+...+.+. .++++|+|++++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~~~~-~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDKDI-CKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 7899999999999999999998 9999888876432 33333 3465311111223322 267899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
|+......+.+..+.++++.+|....+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 107 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIARISEIEY 107 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECSSTTH
T ss_pred CCchHHHHHHHHHHHcCCCEEEEEecCHhH
Confidence 987655555566667888888776666543
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-09 Score=97.57 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=72.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
+++| ++|+|||.|.||+++++.|.+. |++|.+++|..++..+.+.+.|+.. ..+++++++++|+|++++
T Consensus 126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence 6889 9999999999999999999998 8888888887543333344456543 337788899999999999
Q ss_pred CChhHHH---HHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQAD---NYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~---vl~ei~~~mKpgaILi~aaG 213 (281)
|+..... .++ .+.++++++|+++..
T Consensus 195 p~~~~~~~~~~i~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 195 SVGLKDEDPEIFN--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp STTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence 9875321 222 456899999987665
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=84.47 Aligned_cols=111 Identities=7% Similarity=-0.025 Sum_probs=79.6
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||. |+||..++++|++. |++|...+++..+ -.|... +.+++|+.+..|++++++|
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~~~------i~G~~~----~~s~~el~~~vDlvii~vp 78 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNYDE------IEGLKC----YRSVRELPKDVDVIVFVVP 78 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCSE------ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCCCe------ECCeee----cCCHHHhCCCCCEEEEEeC
Confidence 89999999 99999999999998 9986555444321 146664 6689999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
+....++++++.+ ...+.+++..+++.-+..+. .-..++.+ +.||++|-..
T Consensus 79 ~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~~--igpnc~g~~~ 129 (138)
T 1y81_A 79 PKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVEY--SFGRCIMVET 129 (138)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCEE--ECSCCHHHHC
T ss_pred HHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCEE--EcCCcceEEc
Confidence 8777788887666 55667777777765332221 11234454 4699887443
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-08 Score=97.51 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=74.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-------------------CC-ceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-------------------~G-~~~~~~t 168 (281)
.|--+|+|||+|.||.++|..|.+. |++|+++++..++ .+...+ .| +..
T Consensus 6 ~~~~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~~~k-v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~---- 74 (446)
T 4a7p_A 6 HGSVRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKDARK-IELLHQNVMPIYEPGLDALVASNVKAGRLSF---- 74 (446)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCSTT-HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE----
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHhcCCCCccCCCHHHHHHhhcccCCEEE----
Confidence 3447899999999999999999999 9999988887543 322222 11 222
Q ss_pred cCCHHhhcCcCCEEEEccCChh-----------HHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 169 LGDIYETISGSDLVLLLISDAA-----------QADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~-----------~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
..++.|++++||+||+++|... ...+++.+.++++++++|++.+++..
T Consensus 75 ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~p 133 (446)
T 4a7p_A 75 TTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPV 133 (446)
T ss_dssp ESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCT
T ss_pred ECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCc
Confidence 3588899999999999977542 45577889999999999998877664
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=98.29 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-------C-------------ceecCCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------G-------------FTEENGT 168 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-------G-------------~~~~~~t 168 (281)
.|-++|+|||+|.||..+|..|.+. |++|+++++..+ ..+...+. | +..
T Consensus 6 ~~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~~~~-~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---- 74 (478)
T 2y0c_A 6 HGSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDVDQA-KIDILNNGGVPIHEPGLKEVIARNRSAGRLRF---- 74 (478)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----
T ss_pred CCCceEEEECcCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE----
Confidence 3459999999999999999999999 999988876532 23333222 1 121
Q ss_pred cCCHHhhcCcCCEEEEccCC----------hhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 169 LGDIYETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~----------~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
..++++++++||+||+++|. .....+++++.++++++++|++..++..
T Consensus 75 ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~ 132 (478)
T 2y0c_A 75 STDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPV 132 (478)
T ss_dssp ECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCT
T ss_pred ECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCC
Confidence 34677889999999999997 5556688889999999999987777643
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=98.01 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=70.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-------------------CC-ceecCCCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-------------------~G-~~~~~~t~~~ 171 (281)
|+|+|||+|.||.++|..|... |++|+++++..+ ..+...+ .| +.. ..+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~d~~~~-~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~----t~~ 69 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDVSST-KIDLINQGKSPIVEPGLEALLQQGRQTGRLSG----TTD 69 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHhCCCCCcCCCCHHHHHHhhcccCceEE----eCC
Confidence 5899999999999999999998 999888776533 2332222 23 222 357
Q ss_pred HHhhcCcCCEEEEccCChh----------HHHHHHHHHhcCCC---CcEEEEeCCcc
Q 023490 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFL 215 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~----------~~~vl~ei~~~mKp---gaILi~aaG~~ 215 (281)
.+++++++|+|++++|... ..++++++.+.+++ +++|++.+++.
T Consensus 70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~ 126 (436)
T 1mv8_A 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVL 126 (436)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCC
T ss_pred HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcC
Confidence 8888999999999998755 55678888899999 99888755444
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=100.80 Aligned_cols=94 Identities=21% Similarity=0.289 Sum_probs=76.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..+.| ++|+|||+|.||..+|+.++.+ |++|+++++.. ...+.+.+.|+. ..+++++++++|+|+++
T Consensus 270 ~~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~d~~~-~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~a 336 (494)
T 3ce6_A 270 ALIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVTEIDP-INALQAMMEGFD-----VVTVEEAIGDADIVVTA 336 (494)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHTTCE-----ECCHHHHGGGCSEEEEC
T ss_pred CCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCE-----EecHHHHHhCCCEEEEC
Confidence 36899 9999999999999999999999 99988877653 334567788886 34788999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~ 215 (281)
++... +++ +.++.||++++|+..+-+.
T Consensus 337 tgt~~---~i~~~~l~~mk~ggilvnvG~~~ 364 (494)
T 3ce6_A 337 TGNKD---IIMLEHIKAMKDHAILGNIGHFD 364 (494)
T ss_dssp SSSSC---SBCHHHHHHSCTTCEEEECSSSG
T ss_pred CCCHH---HHHHHHHHhcCCCcEEEEeCCCC
Confidence 97644 455 7788899999998765433
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-08 Score=98.22 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=70.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH------------------CCceecCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------------------AGFTEENG 167 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~------------------~G~~~~~~ 167 (281)
++..- |+|+|||+|.||.++|..|. . |++|+++++..+ ..+...+ .++..
T Consensus 32 r~~~~-mkIaVIGlG~mG~~lA~~La-~------G~~V~~~D~~~~-~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~--- 99 (432)
T 3pid_A 32 RGSEF-MKITISGTGYVGLSNGVLIA-Q------NHEVVALDIVQA-KVDMLNQKISPIVDKEIQEYLAEKPLNFRA--- 99 (432)
T ss_dssp ---CC-CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCHH-HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---
T ss_pred cccCC-CEEEEECcCHHHHHHHHHHH-c------CCeEEEEecCHH-HhhHHhccCCccccccHHHHHhhccCCeEE---
Confidence 34444 89999999999999999875 4 899988876533 2222222 12332
Q ss_pred CcCCHHhhcCcCCEEEEccCChh-----------HHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 168 TLGDIYETISGSDLVLLLISDAA-----------QADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~-----------~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
..++++++++||+||+++|... ...+++.+.+ ++++++|++.+.+...
T Consensus 100 -ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pg 158 (432)
T 3pid_A 100 -TTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVG 158 (432)
T ss_dssp -ESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTT
T ss_pred -EcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChH
Confidence 3578899999999999999862 3446678888 9999999988776653
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=95.60 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=69.9
Q ss_pred CcEEEEEccCchHHHHHHHHHh-hhhhccCCcEEEEEe---cCCcccHHHH-HHCCcee----cCC-----------CcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGL---RKGSRSFAEA-RAAGFTE----ENG-----------TLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra-~~~~~~~G~~Viig~---r~~~~s~~~A-~~~G~~~----~~~-----------t~~ 170 (281)
+|+|+|||.|.||.++|..|.. . |++|.+++ +.. +..+.+ ++.|... .++ ...
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 74 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADEA-ERWTKALGADELTVIVNEKDGTQTEVKSRPKVITK 74 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTHH-HHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEES
T ss_pred CceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCcH-HHHHHHHhhccceeeeecCCCccceeeccceEEeC
Confidence 3799999999999999999966 6 88998887 432 223332 2223110 000 134
Q ss_pred CHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+++++++++|+|++++|.....++++++.+.++++++|+..
T Consensus 75 ~~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 75 DPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp CHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred CHHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence 68888999999999999999888999999999999987763
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=94.04 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=73.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC---------CCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~---------~t~~~~~E~l~~ADVV 182 (281)
++|+|||.|.||.++|..|.+. |++|.+++|. +..+...+.|+.... ....+.++ ++++|+|
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 7999999999999999999998 9999888874 334555667765311 01235655 5899999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEE-EeCCc
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~ 214 (281)
++++|.....++++++.+.++++++|+ +..|+
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 999999877788888989999998765 67885
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.6e-09 Score=98.96 Aligned_cols=111 Identities=18% Similarity=0.131 Sum_probs=76.8
Q ss_pred hhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCcee--cCCCcC
Q 023490 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLG 170 (281)
Q Consensus 94 vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~--~~~t~~ 170 (281)
.++|+|....+..+++| ++|+|||.|.||..+++.++.+ |++|+++++... ..+.+++ .|... ......
T Consensus 152 ~~~g~~~~~~~~~~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~~~-~l~~~~~~~g~~~~~~~~~~~ 223 (377)
T 2vhw_A 152 TQGGRGVLMGGVPGVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDINID-KLRQLDAEFCGRIHTRYSSAY 223 (377)
T ss_dssp GGTSCCCCTTCBTTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHTTTSSEEEECCHH
T ss_pred hcCCCcccccCCCCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHhcCCeeEeccCCHH
Confidence 45566533223457999 9999999999999999999998 999888887643 2333443 45421 000123
Q ss_pred CHHhhcCcCCEEEEccC--ChhHHHHH-HHHHhcCCCCcEEEEeC
Q 023490 171 DIYETISGSDLVLLLIS--DAAQADNY-EKIFSCMKPNSILGLSH 212 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP--~~~~~~vl-~ei~~~mKpgaILi~aa 212 (281)
++++.++++|+||.+++ ......++ ++.++.||++.+|++.+
T Consensus 224 ~l~~~l~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 224 ELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp HHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred HHHHHHcCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 56788899999999774 43222343 47889999999998765
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-08 Score=90.63 Aligned_cols=111 Identities=21% Similarity=0.146 Sum_probs=78.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC------cCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT------LGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t------~~~~~E~l~~ADVViLa 185 (281)
|+|+|||.|+||..+|..|. . |.+|.++.|... ..+..++.|+...... .....+.++.+|+|+++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~~~-~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRRQE-QAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCHH-HHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-c------CCceEEEECCHH-HHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence 79999999999999999999 8 999988887643 2344455676542100 00013567889999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcchh-hhhhcccCCCCCceEEEe
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~-~l~~~~~~~~~~i~VIrv 235 (281)
+|+....++++++.+. .++++|++..|+... .+++ .+|.+ +|+..
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~---~~~~~-~vl~g 120 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD---WHVGH-SIYVG 120 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT---CCCSC-EEEEE
T ss_pred eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH---hCCCC-cEEEE
Confidence 9999888888877654 566666788999864 5554 45543 44433
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-09 Score=85.60 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=69.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
.| ++|+|||.|.||..+++.|+.. |++|.+++|..++..+.+++.|.... ...+.+++++++|+|+.++|.
T Consensus 20 ~~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~Divi~at~~ 90 (144)
T 3oj0_A 20 GG-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSLIKNNDVIITATSS 90 (144)
T ss_dssp CC-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHHHHTCSEEEECSCC
T ss_pred cC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHHhcCCCEEEEeCCC
Confidence 38 9999999999999999999988 88888888875544445666665421 145788999999999999997
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
... ++. ...++++.++++.+
T Consensus 91 ~~~--~~~--~~~l~~g~~vid~~ 110 (144)
T 3oj0_A 91 KTP--IVE--ERSLMPGKLFIDLG 110 (144)
T ss_dssp SSC--SBC--GGGCCTTCEEEECC
T ss_pred CCc--Eee--HHHcCCCCEEEEcc
Confidence 631 222 25678888887654
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.5e-08 Score=95.02 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=68.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH---------------HH----CCceecCCCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---------------RA----AGFTEENGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A---------------~~----~G~~~~~~t~~~ 171 (281)
|++|+|||+|.||.++|..|.+. |.|++|+++++..++ .+.. .+ .++.. ..+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d~~~~~-~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~ 75 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVDVNESR-INAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN 75 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSCHHH-HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECCHHH-HHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 57999999999999999999876 335888888765332 2221 11 23332 357
Q ss_pred HHhhcCcCCEEEEccCChhH---------------HHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 172 IYETISGSDLVLLLISDAAQ---------------ADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~~---------------~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++++++++|+|++++|.... ...++++.+.++++++|++.+.+.
T Consensus 76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~ 134 (467)
T 2q3e_A 76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVP 134 (467)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCC
T ss_pred HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCC
Confidence 78899999999999985432 345667889999999988765544
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-08 Score=92.44 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=71.1
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G--~~~~~~t~~~~~E~l~~ADVViL 184 (281)
..+ ++|+|||+|.||.+++++|.+.. |+ +|.+++|..++..+.+.+.+ +.. ..+++|+++++|+|++
T Consensus 133 ~~~-~~igiIG~G~~g~~~a~~l~~~~-----g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~ 202 (312)
T 2i99_A 133 PSS-EVLCILGAGVQAYSHYEIFTEQF-----SFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIIT 202 (312)
T ss_dssp TTC-CEEEEECCSHHHHHHHHHHHHHC-----CCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEE
T ss_pred CCC-cEEEEECCcHHHHHHHHHHHHhC-----CCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEE
Confidence 356 89999999999999999997641 55 78888887554444555555 543 4689999999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
++|.. ..++.+ +.+++|++|++.+.+..
T Consensus 203 atp~~--~~v~~~--~~l~~g~~vi~~g~~~p 230 (312)
T 2i99_A 203 VTLAT--EPILFG--EWVKPGAHINAVGASRP 230 (312)
T ss_dssp CCCCS--SCCBCG--GGSCTTCEEEECCCCST
T ss_pred EeCCC--CcccCH--HHcCCCcEEEeCCCCCC
Confidence 99953 224433 57899999988766554
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.68 E-value=7.7e-08 Score=98.73 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=73.2
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----------CCceec-------C--CCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------N--GTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----------~G~~~~-------~--~t~~ 170 (281)
|++|+|||.|.||.++|..+... |++|+++++..+. .+.+.+ .|...+ + ....
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~~-~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 384 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS------NYPVILKEVNEKF-LEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL 384 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHH-HHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence 58899999999999999999998 9999988876432 222211 221100 0 0023
Q ss_pred CHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
+. +.+++||+||+++|.+... .++.++.+.++++++|+ ..+++.+..+..
T Consensus 385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~ 437 (725)
T 2wtb_A 385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE 437 (725)
T ss_dssp SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT
T ss_pred CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH
Confidence 45 6789999999999987643 47788999999999885 467777766554
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=95.92 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=74.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC---------CC---------
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT--------- 168 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~---------~t--------- 168 (281)
-+++ ++|+|||.|.||...|+.++.. |++|+++++... ..+.+.+.|....+ ++
T Consensus 181 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~-~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~ 252 (381)
T 3p2y_A 181 TVKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVRPE-VAEQVRSVGAQWLDLGIDAAGEGGYARELSEAER 252 (381)
T ss_dssp EECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSSGG-GHHHHHHTTCEECCCC-------------CHHHH
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeccccccccccchhhhhHHHH
Confidence 4678 9999999999999999999999 999988887754 45566667654210 00
Q ss_pred ---cCCHHhhcCcCCEEEEcc--CChhHHHHH-HHHHhcCCCCcEEEEeC
Q 023490 169 ---LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (281)
Q Consensus 169 ---~~~~~E~l~~ADVViLav--P~~~~~~vl-~ei~~~mKpgaILi~aa 212 (281)
..++++.++++|+||.++ |......++ ++.++.||||++|++.+
T Consensus 253 ~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 253 AQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 124678999999999875 543333455 48999999999999874
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-08 Score=90.36 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=68.5
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
+++| +++|||.|.||+++++.|.+. |++|.+++|..++..+.+.+.|.. ..+++++ +++|+|++++
T Consensus 114 ~l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~t 179 (263)
T 2d5c_A 114 PLKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNAT 179 (263)
T ss_dssp CCCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECS
T ss_pred CCCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEcc
Confidence 5777 899999999999999999998 888888888754434445555554 3467788 9999999999
Q ss_pred CChhHH---HHHHHHHhcCCCCcEEEEeC
Q 023490 187 SDAAQA---DNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 187 P~~~~~---~vl~ei~~~mKpgaILi~aa 212 (281)
|+..+. ..+. .+.++++++|+++.
T Consensus 180 p~~~~~~~~~~l~--~~~l~~g~~viD~~ 206 (263)
T 2d5c_A 180 RVGLEDPSASPLP--AELFPEEGAAVDLV 206 (263)
T ss_dssp STTTTCTTCCSSC--GGGSCSSSEEEESC
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEee
Confidence 987532 2232 46789999888754
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-08 Score=81.11 Aligned_cols=113 Identities=11% Similarity=0.007 Sum_probs=78.6
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++|+|||. |+||..++++|++. |++|...++... +. -.|... +.+++|+.+..|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~-----i~G~~~----~~sl~el~~~~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT-----LLGQQG----YATLADVPEKVDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE-----ETTEEC----CSSTTTCSSCCSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc-----cCCeec----cCCHHHcCCCCCEEEEEe
Confidence 88999999 89999999999999 888655544420 11 146664 567888888999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhH
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr 245 (281)
|+....++++++.+ ...+.+++..+.+.-+..+. .-..++.+ +.||++|-...
T Consensus 79 p~~~v~~v~~~~~~-~g~~~i~i~~~~~~~~l~~~---a~~~Gi~~--igpnc~g~~~~ 131 (145)
T 2duw_A 79 NSEAAWGVAQEAIA-IGAKTLWLQLGVINEQAAVL---AREAGLSV--VMDRCPAIELP 131 (145)
T ss_dssp CSTHHHHHHHHHHH-HTCCEEECCTTCCCHHHHHH---HHTTTCEE--ECSCCHHHHST
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCChHHHHHHHH---HHHcCCEE--EcCCeeeEEcc
Confidence 99877888887666 45566766665553222221 11234444 56999886654
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-07 Score=89.87 Aligned_cols=95 Identities=14% Similarity=0.043 Sum_probs=66.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec------------C--CCcCCHHhhcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------------N--GTLGDIYETIS 177 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~------------~--~t~~~~~E~l~ 177 (281)
|+|+|||+|.||..+|..|.+ |++|+++++..+ ..+...+.+.... . ....+..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~d~~~~-~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~ 72 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIVDILPS-KVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK 72 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEECSCHH-HHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-------CCEEEEEECCHH-HHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence 589999999999999999863 688887776533 2333333332100 0 01246778899
Q ss_pred cCCEEEEccCCh-----------hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 178 ~ADVViLavP~~-----------~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++|+|++++|.. ....+++++.+ ++++++|++...+.
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~ 120 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIP 120 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCC
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence 999999999987 35567888888 99999988743333
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.2e-08 Score=93.78 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=69.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-------------------CceecCCCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------GFTEENGTLGD 171 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-------------------G~~~~~~t~~~ 171 (281)
+++|+|||+|.||..+|..|.+. |.|++|+++++..+ ..+...+. ++.. ..+
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D~~~~-~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~----t~~ 79 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHK----CPHITVTVVDMNTA-KIAEWNSDKLPIYEPGLDEIVFAARGRNLFF----SSD 79 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSCHH-HHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECCHH-HHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 37999999999999999999876 23578888776532 22222211 1221 246
Q ss_pred HHhhcCcCCEEEEccCChh---------------HHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~~~---------------~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
+.++++++|+||+++|... ...+++++.++++++++|++.+.+..
T Consensus 80 ~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~ 139 (481)
T 2o3j_A 80 IPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPV 139 (481)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCT
T ss_pred HHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence 6788999999999987532 34567789999999999988655543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.9e-08 Score=93.91 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=73.9
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-------------CCCc----
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-------------NGTL---- 169 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-------------~~t~---- 169 (281)
.+++ .+|+|||.|.+|...++.++.. |.+|+++++...+ .+.+.+.|.... +++.
T Consensus 187 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~~-l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s 258 (405)
T 4dio_A 187 TVPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVRPAA-KEQVASLGAKFIAVEDEEFKAAETAGGYAKEMS 258 (405)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSTTH-HHHHHHTTCEECCCCC-----------------
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHH-HHHHHHcCCceeecccccccccccccchhhhcc
Confidence 4678 9999999999999999999999 9999988887643 455666665310 0011
Q ss_pred --------CCHHhhcCcCCEEEEcc--CChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 170 --------GDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 170 --------~~~~E~l~~ADVViLav--P~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
.+++++++++|+||.++ |......++. +.+..||||++|++.+
T Consensus 259 ~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 259 GEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 15678899999999874 5544444554 8999999999999865
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-07 Score=91.23 Aligned_cols=96 Identities=26% Similarity=0.282 Sum_probs=68.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcc---cHHHHHH---------------------CC-cee
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR---SFAEARA---------------------AG-FTE 164 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~---s~~~A~~---------------------~G-~~~ 164 (281)
+++|+|||+|.||..+|..|... .|+ +|+++++..++ ..+...+ .| +..
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ 92 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC 92 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence 48999999999999999998764 268 99888877540 1221111 22 221
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCChh------------HHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 165 ENGTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 165 ~~~t~~~~~E~l~~ADVViLavP~~~------------~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
..+ .+++++||+||+++|... .....+.+.++++++++|++.+++..
T Consensus 93 ----ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~p 151 (478)
T 3g79_A 93 ----TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITP 151 (478)
T ss_dssp ----ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCT
T ss_pred ----eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCCh
Confidence 234 688999999999998652 12345679999999999998877664
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.5e-08 Score=91.92 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=72.5
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc-----------------
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL----------------- 169 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~----------------- 169 (281)
.+.| ++|+|||.|.+|...++.++.+ |++|+++++... ..+.+++.|.....-..
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~~~-~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTRPE-VKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCGG-GHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 5889 9999999999999999999998 999888887654 34556667754210000
Q ss_pred ------CCHHhhcCcCCEEEEc--cCChhHHHHH-HHHHhcCCCCcEEEEeC
Q 023490 170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (281)
Q Consensus 170 ------~~~~E~l~~ADVViLa--vP~~~~~~vl-~ei~~~mKpgaILi~aa 212 (281)
.+++++++++|+||.+ +|......++ ++.+..||+|.+|++.+
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0266888899999999 5543322445 47788999999999765
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=6e-07 Score=84.19 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=84.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-----------HHHCCceecC----------CCc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN----------GTL 169 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-----------A~~~G~~~~~----------~t~ 169 (281)
+.+|+|||.|.||..+|..+... |++|++++...+ ..+. ..+.|..... ...
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~ 78 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIEPR-QITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC 78 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSCHH-HHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc
Confidence 47999999999999999999999 999999886532 1111 1122211000 013
Q ss_pred CCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 170 ~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
.+++|++++||+|+=++|..-.. +++.++-+.++|++||. -.+++.+..+.+ +.. ..-+|+..||=-|
T Consensus 79 ~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~-~~~--~p~r~ig~HffNP 149 (319)
T 3ado_A 79 TNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT-GLA--HVKQCIVAHPVNP 149 (319)
T ss_dssp CCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT-TCT--TGGGEEEEEECSS
T ss_pred cchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh-hcc--CCCcEEEecCCCC
Confidence 57889999999999999986654 48899999999999984 678888888775 222 2235666555333
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-08 Score=93.01 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=71.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-~~ADVViLavP~~~ 190 (281)
|+|+|||.|+||.++|..|.+. |.+|.+++|..+. .+.....|.... ....+..+.+ +.+|+|++++|+..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~D~vilavk~~~ 74 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPAQ-DIVVKGYEDVTNTFDVIIIAVKTHQ 74 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCCE-EEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeecc-ceecCchHhcCCCCCEEEEeCCccC
Confidence 7899999999999999999998 8888888887432 111112231100 0011334544 89999999999999
Q ss_pred HHHHHHHHHhcCCCCcEE-EEeCCcchh
Q 023490 191 QADNYEKIFSCMKPNSIL-GLSHGFLLG 217 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaIL-i~aaG~~l~ 217 (281)
..++++++.+.++++++| ++..|+...
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~~ 102 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQL 102 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCCG
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCcccH
Confidence 888999999999888754 578898753
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-07 Score=88.29 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=73.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC-CC----------------
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GT---------------- 168 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~-~t---------------- 168 (281)
..+.| ++++|||.|.+|...++.++.+ |++|+++++... ..+.+++.|..... ..
T Consensus 168 ~~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~~~-~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~ 239 (384)
T 1l7d_A 168 GTVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRAA-TKEQVESLGGKFITVDDEAMKTAETAGGYAKEM 239 (384)
T ss_dssp EEECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCST-THHHHHHTTCEECCC------------------
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeecccccccccccccchhhc
Confidence 47899 9999999999999999999999 999888887654 34556667754210 00
Q ss_pred --------cCCHHhhcCcCCEEEEcc--CChhHHHHH-HHHHhcCCCCcEEEEeC
Q 023490 169 --------LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (281)
Q Consensus 169 --------~~~~~E~l~~ADVViLav--P~~~~~~vl-~ei~~~mKpgaILi~aa 212 (281)
...+++.++++|+||.++ |......++ ++.+..||++.+|++.+
T Consensus 240 s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 240 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred CHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 001678889999999888 433222344 57788999999998765
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.2e-07 Score=87.69 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=67.1
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh------------
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET------------ 175 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~------------ 175 (281)
-.| .++.|||+|.||..+|.+|.+. |++|+++++..++ .+.. ..|.... ....++|+
T Consensus 9 ~~~-~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D~~~~k-v~~L-~~g~~pi--~epgl~~ll~~~~~~g~l~~ 77 (431)
T 3ojo_A 9 HHG-SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVDINQQT-IDKL-QNGQISI--EEPGLQEVYEEVLSSGKLKV 77 (431)
T ss_dssp ----CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCHHH-HHHH-HTTCCSS--CCTTHHHHHHHHHHTTCEEE
T ss_pred ccC-CccEEEeeCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHH-HCCCCCc--CCCCHHHHHHhhcccCceEE
Confidence 467 9999999999999999999999 9999888776432 2222 2221100 00011111
Q ss_pred ---cCcCCEEEEccCChh------------HHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 176 ---ISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 176 ---l~~ADVViLavP~~~------------~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
+++||+||+++|... .....+.+.++|++|++|++.+++..
T Consensus 78 ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~p 133 (431)
T 3ojo_A 78 STTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAP 133 (431)
T ss_dssp ESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCT
T ss_pred eCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCCh
Confidence 468999999999754 22345679999999999998877764
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-07 Score=90.79 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=93.4
Q ss_pred ccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 71 LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 71 ~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+..|.++-|....++.+..+. +..|-|... . ..|.| |+++|+|+|.||.++|+.|+++ |.+|++.++..
T Consensus 229 vinvnDs~tK~~fDn~yGt~~s-l~dgi~r~t-g-~~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~~~ 298 (488)
T 3ond_A 229 AINVNDSVTKSKFDNLYGCRHS-LPDGLMRAT-D-VMIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEIDP 298 (488)
T ss_dssp EEECTTSHHHHTTHHHHHHHHH-HHHHHHHHH-C-CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH
T ss_pred eecccchhhhhHhhhhccccHH-HHHHHHHHc-C-CcccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCH
Confidence 4666788888777777777766 433444221 2 45899 9999999999999999999999 99998887653
Q ss_pred cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCc
Q 023490 151 SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 151 ~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~ 214 (281)
. ..+.+...|+. ..+.+++++.+|+|+.+.... +++. +.+..||++++|+.++.+
T Consensus 299 ~-~a~~Aa~~g~d-----v~~lee~~~~aDvVi~atG~~---~vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 299 I-CALQATMEGLQ-----VLTLEDVVSEADIFVTTTGNK---DIIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp H-HHHHHHHTTCE-----ECCGGGTTTTCSEEEECSSCS---CSBCHHHHTTSCTTEEEEESSST
T ss_pred H-HHHHHHHhCCc-----cCCHHHHHHhcCEEEeCCCCh---hhhhHHHHHhcCCCeEEEEcCCC
Confidence 3 34456667775 357889999999999876543 2443 578899999999877654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.7e-06 Score=68.10 Aligned_cols=97 Identities=15% Similarity=0.027 Sum_probs=64.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh----cCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET----ISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~----l~~ADVViLavP 187 (281)
++|.|+|+|.+|..+++.|.+. |++|++.++.. +..+.+.+.|+....+...+.+.+ ++++|+|++++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~~~-~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDKSK-EKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESCH-HHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEECCH-HHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 8999999999999999999999 99998887764 344555566654221223333222 578999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+......+-.....+....++..+..-.
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~~~~~ 107 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRVSSPK 107 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEESCGG
T ss_pred CHHHHHHHHHHHHHhCCceEEEEEcChh
Confidence 6554433334444444445665555433
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=71.29 Aligned_cols=103 Identities=15% Similarity=0.053 Sum_probs=67.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCH---Hhh-cCcC
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISGS 179 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~G~~~~~~t~~~~---~E~-l~~A 179 (281)
+....+ ++|.|||+|.+|..+++.|+.. |++|++.++...+ .+.+. +.|...-.+...+. .++ ++++
T Consensus 14 ~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~~~-~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~a 85 (155)
T 2g1u_A 14 SKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNEYA-FHRLNSEFSGFTVVGDAAEFETLKECGMEKA 85 (155)
T ss_dssp ---CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGGG-GGGSCTTCCSEEEESCTTSHHHHHTTTGGGC
T ss_pred hcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHhcCCCcEEEecCCCHHHHHHcCcccC
Confidence 467888 9999999999999999999998 9999888876433 23333 44543211112222 223 6789
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcc
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFL 215 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~ 215 (281)
|+|++++++......+.++...+.+.. ++..+.+..
T Consensus 86 d~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~ 122 (155)
T 2g1u_A 86 DMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPE 122 (155)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence 999999998766555555555554544 445555544
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.38 E-value=7e-07 Score=78.46 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=59.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEE-EEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~V-iig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-~~ADVViLavP~~ 189 (281)
++|||||+|.||+.++++|... |+++ .++++.. +. .+ . +.+++|++ .++|+|++++|+.
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~~-~~----~~---~-----~~~~~~l~~~~~DvVv~~~~~~ 61 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVRG-EH----EK---M-----VRGIDEFLQREMDVAVEAASQQ 61 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSC-CC----TT---E-----ESSHHHHTTSCCSEEEECSCHH
T ss_pred CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecCc-ch----hh---h-----cCCHHHHhcCCCCEEEECCCHH
Confidence 5899999999999999999877 8887 4565542 21 11 2 45889999 7999999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeC
Q 023490 190 AQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aa 212 (281)
.+.+++.+ .++.|..+++..
T Consensus 62 ~~~~~~~~---~l~~G~~vv~~~ 81 (236)
T 2dc1_A 62 AVKDYAEK---ILKAGIDLIVLS 81 (236)
T ss_dssp HHHHHHHH---HHHTTCEEEESC
T ss_pred HHHHHHHH---HHHCCCcEEEEC
Confidence 77666544 345788776643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-06 Score=69.31 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=64.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---h-hcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E-~l~~ADVViLavP 187 (281)
++|.|||+|.+|..+|+.|++. |++|++.++.. +..+.+.+.|+..-.+...+.+ + -++++|+|++++|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~~~-~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIETSR-TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEESCH-HHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC------CCCEEEEECCH-HHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 4799999999999999999999 99998888764 3455666677643212222322 2 2578999999999
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
+......+-.....+.|+. +|..+..
T Consensus 81 ~~~~n~~~~~~a~~~~~~~~iiar~~~ 107 (140)
T 3fwz_A 81 NGYEAGEIVASARAKNPDIEIIARAHY 107 (140)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEEESS
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 9776543333444454554 4444443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-06 Score=67.97 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=62.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-cCcCCEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E~-l~~ADVV 182 (281)
.+++ ++|.|+|+|.+|..+++.|... |++|++.++... ..+...+.+.....+...+.+ ++ ++++|+|
T Consensus 3 ~~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~~~-~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~v 74 (144)
T 2hmt_A 3 RIKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDINEE-KVNAYASYATHAVIANATEENELLSLGIRNFEYV 74 (144)
T ss_dssp ---C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESCHH-HHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred CCcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEE
Confidence 4566 8999999999999999999998 998888776532 222233334321111122332 22 6789999
Q ss_pred EEccCCh-hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 183 LLLISDA-AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 183 iLavP~~-~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+++++.. .....+.+....+.+..++..+.+..
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 108 (144)
T 2hmt_A 75 IVAIGANIQASTLTTLLLKELDIPNIWVKAQNYY 108 (144)
T ss_dssp EECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHH
T ss_pred EECCCCchHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 9999975 33333444555566665665665543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.7e-07 Score=80.64 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=64.2
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|||||+|.||.. +++.++.. .+.+++ ++++..++..+.+.+.|+.. +.+.+|++++.|+|++++|+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence 68999999999996 88888764 166766 55555444344556677763 678999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEE
Q 023490 190 AQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~ 210 (281)
.+.++..+.+. .|..|++
T Consensus 78 ~h~~~~~~al~---~gk~vl~ 95 (308)
T 3uuw_A 78 THYEIIKILLN---LGVHVYV 95 (308)
T ss_dssp GHHHHHHHHHH---TTCEEEE
T ss_pred hHHHHHHHHHH---CCCcEEE
Confidence 88887765544 3554443
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.6e-07 Score=83.76 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=70.3
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCcee--cCCCcCCHHhhcCcCCE
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDL 181 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~--~~~t~~~~~E~l~~ADV 181 (281)
...++| ++++|+|.|.||..+++.++.. |++|++.++...+ .+.+.+ .|... ......+++++++++|+
T Consensus 161 ~~~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~l~~~~~~~Dv 232 (369)
T 2eez_A 161 VPGVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVNHKR-LQYLDDVFGGRVITLTATEANIKKSVQHADL 232 (369)
T ss_dssp BTBBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHTTTSEEEEECCHHHHHHHHHHCSE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHhcCceEEEecCCHHHHHHHHhCCCE
Confidence 357999 9999999999999999999999 9999888876432 333333 44321 00012356788899999
Q ss_pred EEEccCChh-HH-HH-HHHHHhcCCCCcEEEEeC
Q 023490 182 VLLLISDAA-QA-DN-YEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 182 ViLavP~~~-~~-~v-l~ei~~~mKpgaILi~aa 212 (281)
|+.+++... .. .+ ..+.++.||++.+|++.+
T Consensus 233 Vi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 233 LIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp EEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred EEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 999998653 23 23 357889999999887654
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.1e-06 Score=69.96 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=66.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh--cCcCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSD 180 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~--l~~AD 180 (281)
.++.+ ++|.|||+|.||..+|+.|++.- |++|++.++..+ ..+.+.+.|+....+...+ +.++ ++++|
T Consensus 35 ~~~~~-~~v~IiG~G~~G~~~a~~L~~~~-----g~~V~vid~~~~-~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 35 INPGH-AQVLILGMGRIGTGAYDELRARY-----GKISLGIEIREE-AAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp BCCTT-CSEEEECCSHHHHHHHHHHHHHH-----CSCEEEEESCHH-HHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred cCCCC-CcEEEECCCHHHHHHHHHHHhcc-----CCeEEEEECCHH-HHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 45778 89999999999999999998630 678888877643 3455566676421111223 2344 77899
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcE-EEEeCC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHG 213 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaI-Li~aaG 213 (281)
+|++++|+......+-.....+.++.. +..+.+
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 141 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEY 141 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 999999986655443344555665554 444444
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=80.29 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=61.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|+||..+++.++.. .+++++ ++++...+..+.+.+.|... +.+.+|+++ +.|+|++++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 156765 45554333334456667553 679999998 89999999999
Q ss_pred hhHHHHHHHHHhc
Q 023490 189 AAQADNYEKIFSC 201 (281)
Q Consensus 189 ~~~~~vl~ei~~~ 201 (281)
..+.++..+.+..
T Consensus 76 ~~h~~~~~~al~~ 88 (344)
T 3euw_A 76 STHVDLITRAVER 88 (344)
T ss_dssp GGHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHc
Confidence 9988877655443
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=79.97 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=50.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHHCC---------ceecCCCcCCHHhhcCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGS 179 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~~G---------~~~~~~t~~~~~E~l~~A 179 (281)
|++|+|||.|+||.++|..|... | .+|.++++..++....+.+.+ +.. ...+. +.+++|
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~a 70 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADA 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCC
Confidence 57999999999999999999988 7 688888876433222222211 111 02355 788999
Q ss_pred CEEEEccCChh
Q 023490 180 DLVLLLISDAA 190 (281)
Q Consensus 180 DVViLavP~~~ 190 (281)
|+|++++|...
T Consensus 71 DvViiav~~~~ 81 (309)
T 1hyh_A 71 DVVISTLGNIK 81 (309)
T ss_dssp SEEEECCSCGG
T ss_pred CEEEEecCCcc
Confidence 99999999855
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=3.9e-07 Score=85.99 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCcCCEEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~----G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+ ++|+|||.|.||.++++.+.... ...+|.+++|..++..+.+.+. |+..+ ...+.+|+++++|+|++
T Consensus 128 ~~-~~v~iIGaG~~a~~~a~al~~~~----~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~--~~~~~~eav~~aDiVi~ 200 (350)
T 1x7d_A 128 NA-RKMALIGNGAQSEFQALAFHKHL----GIEEIVAYDTDPLATAKLIANLKEYSGLTIR--RASSVAEAVKGVDIITT 200 (350)
T ss_dssp TC-CEEEEECCSTTHHHHHHHHHHHS----CCCEEEEECSSHHHHHHHHHHHTTCTTCEEE--ECSSHHHHHTTCSEEEE
T ss_pred cC-CeEEEECCcHHHHHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHHHHHhccCceEE--EeCCHHHHHhcCCEEEE
Confidence 45 89999999999999999886530 0247888888755444444443 53211 14688999999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+||......++. ...+++|++|+..+.+.
T Consensus 201 aTps~~~~pvl~--~~~l~~G~~V~~vgs~~ 229 (350)
T 1x7d_A 201 VTADKAYATIIT--PDMLEPGMHLNAVGGDC 229 (350)
T ss_dssp CCCCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred eccCCCCCceec--HHHcCCCCEEEECCCCC
Confidence 999863222332 25789999998877654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=79.54 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=60.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
++|||||+|.||..+++.+.+. .+++++ ++++..++..+.+.+.|+. +.+.+|+++ +.|+|++++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999874 156766 4555443334456667765 458999988 89999999999
Q ss_pred hhHHHHHHHHHh
Q 023490 189 AAQADNYEKIFS 200 (281)
Q Consensus 189 ~~~~~vl~ei~~ 200 (281)
..+.++..+.+.
T Consensus 74 ~~h~~~~~~al~ 85 (331)
T 4hkt_A 74 DTHADLIERFAR 85 (331)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 988877665544
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-06 Score=79.99 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=64.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|.||...++.+++. ..+++++ ++++..++..+.+.+.|+.. +.+.+|+++ +.|+|++++|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKH----ADRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhC----CCCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999998874 1266765 45554443344556677754 679999997 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~ 210 (281)
..+.++..+.+. .|..|++
T Consensus 86 ~~h~~~~~~al~---~gk~v~~ 104 (354)
T 3q2i_A 86 GLHPTQSIECSE---AGFHVMT 104 (354)
T ss_dssp GGHHHHHHHHHH---TTCEEEE
T ss_pred HHHHHHHHHHHH---CCCCEEE
Confidence 988777665443 4555543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-06 Score=79.11 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=61.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|.||..+++.++.. .+++|+ ++++..++..+.+.+.|+.. .+.+.+|+++ +.|+|++++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 6899999999999999999885 156665 45555444445566777631 2678999987 89999999999
Q ss_pred hhHHHHHHHHHh
Q 023490 189 AAQADNYEKIFS 200 (281)
Q Consensus 189 ~~~~~vl~ei~~ 200 (281)
..+.++..+.+.
T Consensus 78 ~~h~~~~~~al~ 89 (330)
T 3e9m_A 78 QGHYSAAKLALS 89 (330)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988877665544
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-06 Score=81.97 Aligned_cols=92 Identities=15% Similarity=0.179 Sum_probs=67.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||.|.||..+++.|+... ...+|.+++|. +..+.+.+ .|+..+ .. +.+|+++++|+|+++||
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~----~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT~ 192 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARF----ALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTATR 192 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS----CCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECCC
T ss_pred cEEEEECccHHHHHHHHHHHHhC----CCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEccC
Confidence 89999999999999999998741 02378889888 34444432 355321 14 89999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
... .++. .+.++||++|++++.+..
T Consensus 193 s~~--pvl~--~~~l~~G~~V~~vGs~~p 217 (313)
T 3hdj_A 193 STT--PLFA--GQALRAGAFVGAIGSSLP 217 (313)
T ss_dssp CSS--CSSC--GGGCCTTCEEEECCCSST
T ss_pred CCC--cccC--HHHcCCCcEEEECCCCCC
Confidence 752 2333 356999999998877653
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.1e-06 Score=81.90 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=59.6
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
++.| ++|+|||.|.||..+++.++.. |+ +|++++|...+..+.+.+.|.... ...++.+.+.++|+|+.+
T Consensus 164 ~l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~l~~~l~~aDvVi~a 234 (404)
T 1gpj_A 164 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEAV--RFDELVDHLARSDVVVSA 234 (404)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEEC--CGGGHHHHHHTCSEEEEC
T ss_pred cccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcee--cHHhHHHHhcCCCEEEEc
Confidence 5799 9999999999999999999999 98 898888875443355666675421 134677888999999999
Q ss_pred cCChh
Q 023490 186 ISDAA 190 (281)
Q Consensus 186 vP~~~ 190 (281)
+|...
T Consensus 235 t~~~~ 239 (404)
T 1gpj_A 235 TAAPH 239 (404)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 98654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.7e-06 Score=68.90 Aligned_cols=115 Identities=10% Similarity=0.037 Sum_probs=78.8
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||. |++|..++++|++. |++|. ...+.. ..-.|... +.+++|+....|++++++|
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v~--~Vnp~~----~~i~G~~~----y~sl~~l~~~vDlvvi~vp 86 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEH------GYDVY--PVNPKY----EEVLGRKC----YPSVLDIPDKIEVVDLFVK 86 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEE--EECTTC----SEETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHC------CCEEE--EECCCC----CeECCeec----cCCHHHcCCCCCEEEEEeC
Confidence 89999999 79999999999998 98743 332221 01146653 5688998889999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y 248 (281)
+....+++++....-. ..+ ++..|..-..+.+ ..-..++.+ +.||++|-...|++
T Consensus 87 ~~~~~~vv~~~~~~gi-~~i-~~~~g~~~~~l~~--~a~~~Gi~v--vGpnc~gv~~~~~~ 141 (144)
T 2d59_A 87 PKLTMEYVEQAIKKGA-KVV-WFQYNTYNREASK--KADEAGLII--VANRCMMREHERLL 141 (144)
T ss_dssp HHHHHHHHHHHHHHTC-SEE-EECTTCCCHHHHH--HHHHTTCEE--EESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEE-EECCCchHHHHHH--HHHHcCCEE--EcCCchhhcchhhc
Confidence 9888888887665432 334 4555654322222 011235554 46999999988886
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.8e-06 Score=76.42 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=62.1
Q ss_pred cEEEEEccCchHHHH-HHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~Ai-A~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
++|||||+|.||..+ ++.+.+. +++++ ++++..++..+.+.+.|+.. .+.+.+|+++ +.|+|++++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 71 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT 71 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 479999999999998 8888765 78765 45554433334456667631 2568999987 5999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+..+.++..+.+ +.|..|++
T Consensus 72 ~~~h~~~~~~al---~~Gk~v~~ 91 (332)
T 2glx_A 72 NELHREQTLAAI---RAGKHVLC 91 (332)
T ss_dssp GGGHHHHHHHHH---HTTCEEEE
T ss_pred hhHhHHHHHHHH---HCCCeEEE
Confidence 988877666543 35665543
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-06 Score=79.97 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=62.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
++|||||+|+||..+++.++.. .+++++ ++++..++..+.+.+.|+.. .+.+.+|+++ +.|+|++++|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEK---AYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 6899999999999999999874 156665 45554433334456667531 1568999998 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi 209 (281)
..+.++..+.+. .|..|+
T Consensus 75 ~~h~~~~~~al~---~gk~v~ 92 (344)
T 3ezy_A 75 NTHSELVIACAK---AKKHVF 92 (344)
T ss_dssp GGHHHHHHHHHH---TTCEEE
T ss_pred cchHHHHHHHHh---cCCeEE
Confidence 888776665443 355443
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-06 Score=78.50 Aligned_cols=93 Identities=14% Similarity=0.244 Sum_probs=69.2
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
++|+|||+ |.||+.+++++++. |+++++...+.... ....|+.. +.+++|+.+ +.|++++++|+
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~~~g---~~~~G~~v----y~sl~el~~~~~~D~viI~tP~ 74 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGG---TTHLGLPV----FNTVREAVAATGATASVIYVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCCccc---ceeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 88855444432100 01356664 668999988 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchhh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGH 218 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~~ 218 (281)
..+.+++.+.... ....+|+++.|+....
T Consensus 75 ~~~~~~~~ea~~~-Gi~~iVi~t~G~~~~~ 103 (288)
T 2nu8_A 75 PFCKDSILEAIDA-GIKLIITITEGIPTLD 103 (288)
T ss_dssp GGHHHHHHHHHHT-TCSEEEECCCCCCHHH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHH
Confidence 9988888876653 2234566788997643
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.7e-06 Score=78.35 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=62.6
Q ss_pred cEEEEEccCchHHHHHHHHH-hhhhhccCCcEEE-EEecCCcccHHHHHHCCc--eecCCCcCCHHhhcCc--CCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK-VGLRKGSRSFAEARAAGF--TEENGTLGDIYETISG--SDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~--~~~~~t~~~~~E~l~~--ADVViLa 185 (281)
.+|||||+|.||..+++.++ .. .+++++ ++++..++..+.+.+.|+ .. +.+.+|++++ .|+|+++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~-----~~~~l~av~d~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 73 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKL-----SGAEIVAVTDVNQEAAQKVVEQYQLNATV----YPNDDSLLADENVDAVLVT 73 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----SSEEEEEEECSSHHHHHHHHHHTTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred EEEEEECccHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEC
Confidence 58999999999999999998 43 156765 455544443445667773 32 6789999876 9999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+|+..+.++..+.+ +.|..|++
T Consensus 74 tp~~~h~~~~~~al---~~Gk~vl~ 95 (344)
T 3mz0_A 74 SWGPAHESSVLKAI---KAQKYVFC 95 (344)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEEE
T ss_pred CCchhHHHHHHHHH---HCCCcEEE
Confidence 99998887766544 34554443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.9e-06 Score=70.75 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=63.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh-cCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~-l~~ADVViLavP 187 (281)
|+|.|||+|.+|..+|+.|.+. |++|++.++..+...+.+.+.|+..-.+...+ +.++ ++++|+|+++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 5799999999999999999998 99998888764432233444554321122223 2333 789999999999
Q ss_pred ChhHHHHHHHHHhcCCCC-cEEEEeC
Q 023490 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpg-aILi~aa 212 (281)
+.....++......+.+. .++..+.
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 987665555555544343 3444443
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.19 E-value=3e-06 Score=78.33 Aligned_cols=87 Identities=10% Similarity=0.117 Sum_probs=63.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhc--CcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l--~~ADVViLavP~ 188 (281)
.+|||||+|.||..+++.+++. .+++++ ++++..++..+.+.+.|+.. +.+.+|++ .+.|+|++++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence 5899999999999999999875 156755 45554433334456667763 67899999 679999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~ 210 (281)
..+.++..+.+. .|..|++
T Consensus 77 ~~h~~~~~~al~---~gk~vl~ 95 (354)
T 3db2_A 77 DKHAEVIEQCAR---SGKHIYV 95 (354)
T ss_dssp TSHHHHHHHHHH---TTCEEEE
T ss_pred HHHHHHHHHHHH---cCCEEEE
Confidence 888776665443 4554443
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-06 Score=82.66 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=71.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhc--cCCcEEEEEecCCcc---cHHHHHH-C--------CceecC--CCcCCHHhh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEA--KSDIVVKVGLRKGSR---SFAEARA-A--------GFTEEN--GTLGDIYET 175 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~--~~G~~Viig~r~~~~---s~~~A~~-~--------G~~~~~--~t~~~~~E~ 175 (281)
.||+|||.|+.|.++|..|.+.-.+. .++.+|.+|.|..+. ...+... . |+...+ ....|++++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS 114 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence 48999999999999999998760000 001358888776431 1111111 1 111000 013578999
Q ss_pred cCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEE-EeCCcc
Q 023490 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi-~aaG~~ 215 (281)
++++|+|++++|.+....+++++.++++++..|+ .+.|+.
T Consensus 115 l~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie 155 (391)
T 4fgw_A 115 VKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFE 155 (391)
T ss_dssp HTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred HhcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccc
Confidence 9999999999999999999999999999998665 678875
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.4e-06 Score=77.58 Aligned_cols=92 Identities=15% Similarity=0.219 Sum_probs=69.6
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
++|+|+|. |+||+.+++++++. |+++++...+... .....|+.. +.+++|+.+ ..|++++++|+
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~---g~~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKG---GMEVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCT---TCEETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCC---CceECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 9986545444320 001356664 668999888 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
....+++++.... .-..+|+++.||...
T Consensus 75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~~ 102 (288)
T 1oi7_A 75 PAAADAALEAAHA-GIPLIVLITEGIPTL 102 (288)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHH
Confidence 9888888876553 234477788999764
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.6e-05 Score=60.47 Aligned_cols=94 Identities=16% Similarity=0.041 Sum_probs=62.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLL 184 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViL 184 (281)
.+ ++|.|+|.|.||.++++.|.+. | ++|++.+|... ..+.....++........ ++.++++++|+|+.
T Consensus 4 ~~-~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 4 MR-WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHDLA-ALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVIS 75 (118)
T ss_dssp TC-EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESCHH-HHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred Cc-CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCHH-HHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence 34 8999999999999999999998 8 88888887643 233333445332111122 34567889999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|......+++.... .|...++..+
T Consensus 76 ~~~~~~~~~~~~~~~~---~g~~~~~~~~ 101 (118)
T 3ic5_A 76 AAPFFLTPIIAKAAKA---AGAHYFDLTE 101 (118)
T ss_dssp CSCGGGHHHHHHHHHH---TTCEEECCCS
T ss_pred CCCchhhHHHHHHHHH---hCCCEEEecC
Confidence 9987766556554432 3555554433
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.7e-06 Score=74.79 Aligned_cols=87 Identities=11% Similarity=0.112 Sum_probs=61.1
Q ss_pred cEEEEEccCchHHHHHHHHH-hhhhhccCCcEEE-EEecCCcccHHHHHHCCc-eecCCCcCCHHhhcC--cCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK-VGLRKGSRSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~-~~~~~t~~~~~E~l~--~ADVViLav 186 (281)
.+|||||+|.||..+++.++ .. .+++++ ++++..++..+.+++.|. .. +.+.+|+++ +.|+|++++
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~~D~V~i~t 79 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVETT----YTNYKDMIDTENIDAIFIVA 79 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSEE----ESCHHHHHTTSCCSEEEECS
T ss_pred ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 68999999999999999987 43 166754 445443332334555676 32 568999987 699999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
|+..+.++..+.+ +.|..|++
T Consensus 80 p~~~h~~~~~~al---~~G~~v~~ 100 (346)
T 3cea_A 80 PTPFHPEMTIYAM---NAGLNVFC 100 (346)
T ss_dssp CGGGHHHHHHHHH---HTTCEEEE
T ss_pred ChHhHHHHHHHHH---HCCCEEEE
Confidence 9988877665543 34665544
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.3e-06 Score=77.59 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=83.5
Q ss_pred cCCCcEEEEE-cc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEE
Q 023490 108 FNGINQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (281)
Q Consensus 108 l~G~ktIGII-G~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVVi 183 (281)
+.- ++++|| |. |++|..+++++++. |+++++...+.... .+-.|+.. +.+++|+.+ ..|+++
T Consensus 11 ~~~-~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~av 76 (305)
T 2fp4_A 11 VDK-NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASV 76 (305)
T ss_dssp CCT-TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEE
T ss_pred hCC-CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEE
Confidence 344 889999 98 99999999999999 99865455443210 01256764 568999988 899999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhh---hhhcccCCCCCc-eEEEeccCCCChhhH
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGH---LQSIGLDFPKNI-GVIAVCPKGMGPSVR 245 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~---l~~~~~~~~~~i-~VIrvmPntpg~~vr 245 (281)
+++|+....+++++.... .-..+|+++.|+.... +.+ . ..+. .+..+.||+||--.+
T Consensus 77 I~vP~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~l~~---~-a~~~~gi~liGPnc~Gii~p 137 (305)
T 2fp4_A 77 IYVPPPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVRVKH---R-LLRQGKTRLIGPNCPGVINP 137 (305)
T ss_dssp ECCCHHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHH---H-HTTCSSCEEECSSSCEEEET
T ss_pred EecCHHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHHHHH---H-HHhcCCcEEEeCCCCeEecc
Confidence 999999888888876543 2345788999997643 222 1 1223 445577988775443
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.9e-06 Score=74.29 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=61.6
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|||||+|.||.. +++.+.+. .+++++ ++++..++..+.+++.|+.. +.+.+++..+.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence 68999999999997 88888763 156765 66666554445566667652 457777767899999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEE
Q 023490 190 AQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi 209 (281)
.+.++..+.+ +.|..|+
T Consensus 77 ~h~~~~~~al---~~G~~v~ 93 (319)
T 1tlt_A 77 SHFDVVSTLL---NAGVHVC 93 (319)
T ss_dssp HHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHH---HcCCeEE
Confidence 8877666543 3465443
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.4e-06 Score=76.22 Aligned_cols=86 Identities=21% Similarity=0.238 Sum_probs=63.0
Q ss_pred cEEEEEccCchHHHHHHHHH-hhhhhccCCcEEE-EEecCCcccHHHHHHCC--ceecCCCcCCHHhhcC--cCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVK-VGLRKGSRSFAEARAAG--FTEENGTLGDIYETIS--GSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G--~~~~~~t~~~~~E~l~--~ADVViLa 185 (281)
.+|||||+|.||...++.+. .. .+++++ ++++..++..+.+++.| ... +.+.+|+++ +.|+|+++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTV-----SGVEVVAVCDIVAGRAQAALDKYAIEAKD----YNDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----TTEEEEEEECSSTTHHHHHHHHHTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred eeEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEc
Confidence 68999999999999999998 42 166765 55665554445566777 332 678999987 48999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEE
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi 209 (281)
+|+..+.++..+.+. .|..|+
T Consensus 95 tp~~~h~~~~~~al~---aGk~Vl 115 (357)
T 3ec7_A 95 ASNEAHADVAVAALN---ANKYVF 115 (357)
T ss_dssp SCGGGHHHHHHHHHH---TTCEEE
T ss_pred CCcHHHHHHHHHHHH---CCCCEE
Confidence 999988877665443 455444
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.11 E-value=7.8e-06 Score=67.42 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=77.7
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||. |++|..++++|++. |++|. ...+.+..+ .-.|... +.+++|+-+..|++++++|
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v~--~vnp~~~~~--~i~G~~~----~~sl~el~~~vDlavi~vp 79 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVL--PVNPRFQGE--ELFGEEA----VASLLDLKEPVDILDVFRP 79 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEE--EECGGGTTS--EETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC------CCEEE--EeCCCcccC--cCCCEEe----cCCHHHCCCCCCEEEEEeC
Confidence 89999999 89999999999998 99743 333211000 1146653 5688898889999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y 248 (281)
+....+++++..+.-- ..+++. .|+.-..+.+ ..-..++.+ +.||++|-...++.
T Consensus 80 ~~~~~~v~~~~~~~gi-~~i~~~-~g~~~~~~~~--~a~~~Gir~--vgpnc~g~~~~~~~ 134 (140)
T 1iuk_A 80 PSALMDHLPEVLALRP-GLVWLQ-SGIRHPEFEK--ALKEAGIPV--VADRCLMVEHKRLF 134 (140)
T ss_dssp HHHHTTTHHHHHHHCC-SCEEEC-TTCCCHHHHH--HHHHTTCCE--EESCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEEEEc-CCcCHHHHHH--HHHHcCCEE--EcCCccceEChhhc
Confidence 9777778887665432 345544 4443222221 011235555 46999998887765
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.9e-06 Score=75.10 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=47.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH--C------CceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A------GFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~--~------G~~~~~~t~~~~~E~l~~ADV 181 (281)
|+|+|||.|+||.++|..|... |+ +|.++++...+....+.. . ..... ..+ .+.+++||+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~---~~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY---AGD-YADLKGSDV 70 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE---ECC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE---eCC-HHHhCCCCE
Confidence 5899999999999999999988 88 888887763322221211 1 11110 124 467899999
Q ss_pred EEEccCCh
Q 023490 182 VLLLISDA 189 (281)
Q Consensus 182 ViLavP~~ 189 (281)
|++++|..
T Consensus 71 Viiav~~~ 78 (319)
T 1a5z_A 71 VIVAAGVP 78 (319)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99999963
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.9e-06 Score=79.92 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=53.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVViL 184 (281)
.+|+| |+|+|+|+|+||..+|+.|.+. |++|++.++...+..+.+.+.|.. ..+.++++. +||+++.
T Consensus 169 ~~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~-----~v~~~~ll~~~~DIvip 236 (364)
T 1leh_A 169 DSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGAD-----AVAPNAIYGVTCDIFAP 236 (364)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCE-----ECCGGGTTTCCCSEEEE
T ss_pred cCCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCE-----EEChHHHhccCCcEeec
Confidence 37999 9999999999999999999999 999987776543333345555654 235566665 8999998
Q ss_pred ccCC
Q 023490 185 LISD 188 (281)
Q Consensus 185 avP~ 188 (281)
|...
T Consensus 237 ~a~~ 240 (364)
T 1leh_A 237 CALG 240 (364)
T ss_dssp CSCS
T ss_pred cchH
Confidence 7533
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.09 E-value=3.4e-06 Score=78.29 Aligned_cols=95 Identities=14% Similarity=0.039 Sum_probs=66.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G---~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.. ++|+|||.|.||..+++.|.... ...+|.+++|..++..+.+.+.+ +.. . +.+.+|++ ++|+|+++
T Consensus 124 ~~-~~v~iIGaG~~a~~~~~al~~~~----~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~a 194 (322)
T 1omo_A 124 NS-SVFGFIGCGTQAYFQLEALRRVF----DIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVTT 194 (322)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHHS----CCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEEC
T ss_pred CC-CEEEEEcCcHHHHHHHHHHHHhC----CccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEEe
Confidence 45 89999999999999999998740 02478888887554444444322 111 1 35788999 99999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcch
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~l 216 (281)
||... .++. ...+++|++|++.+.+..
T Consensus 195 Tp~~~--pv~~--~~~l~~G~~V~~ig~~~p 221 (322)
T 1omo_A 195 TPSRK--PVVK--AEWVEEGTHINAIGADGP 221 (322)
T ss_dssp CCCSS--CCBC--GGGCCTTCEEEECSCCST
T ss_pred eCCCC--ceec--HHHcCCCeEEEECCCCCC
Confidence 99743 2332 256899999988766553
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.1e-06 Score=75.62 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=61.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|.||..+++.++.. .+.+++ ++++..++..+.+.+.|+.. .+.+.+|+++ +.|+|++++|+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999876 134554 55555444444556666631 2579999998 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~ 210 (281)
..+.++..+.+. .|..|++
T Consensus 78 ~~h~~~~~~al~---aGk~Vl~ 96 (329)
T 3evn_A 78 QDHYKVAKAALL---AGKHVLV 96 (329)
T ss_dssp GGHHHHHHHHHH---TTCEEEE
T ss_pred HHHHHHHHHHHH---CCCeEEE
Confidence 888777665443 4554443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2e-06 Score=78.96 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=66.3
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhcCcCCEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~---~~~~~t~~~~~E~l~~ADVV 182 (281)
+++| +++.|||.|.||++++..|.+. |. +|.+++|..++..+.+.+.+. ... ...++.+.++++|+|
T Consensus 138 ~l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 138 TLDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYF--SLAEAETRLAEYDII 208 (297)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEE--CHHHHHHTGGGCSEE
T ss_pred CCCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCcee--eHHHHHhhhccCCEE
Confidence 5789 9999999999999999999998 98 899999876554455555443 110 012456778999999
Q ss_pred EEccCChhHHH----HHHHHHhcCCCCcEEEEe
Q 023490 183 LLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 183 iLavP~~~~~~----vl~ei~~~mKpgaILi~a 211 (281)
|.++|...... .+. ...++++.+++++
T Consensus 209 In~t~~~~~~~~~~~~i~--~~~l~~~~~v~D~ 239 (297)
T 2egg_A 209 INTTSVGMHPRVEVQPLS--LERLRPGVIVSDI 239 (297)
T ss_dssp EECSCTTCSSCCSCCSSC--CTTCCTTCEEEEC
T ss_pred EECCCCCCCCCCCCCCCC--HHHcCCCCEEEEc
Confidence 99999754311 011 2346677777654
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6.9e-06 Score=76.26 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=63.4
Q ss_pred cEEEEEccCchHH-HHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~-AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.+|||||+|.||. .+++.+++. .+++|+ ++++..++..+.+++.|+.. +.+.+|+++ +.|+|++++|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence 6899999999998 789988875 156665 55655444445566778764 568999987 5899999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi 209 (281)
+..+.++..+.+. .|..|+
T Consensus 99 ~~~h~~~~~~al~---aGk~Vl 117 (350)
T 3rc1_A 99 AVLHAEWIDRALR---AGKHVL 117 (350)
T ss_dssp GGGHHHHHHHHHH---TTCEEE
T ss_pred cHHHHHHHHHHHH---CCCcEE
Confidence 9988887765544 355443
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.7e-06 Score=74.61 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=56.7
Q ss_pred cEEEEEccCchHH-HHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~-AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-~~ADVViLavP~~ 189 (281)
++|||||+|+||. .+++.+... .+.+++++++..++..+.+.+.|+.. .+.+..|++ ++.|+|++++|+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCch
Confidence 5899999999998 599988764 15677766665444344556667541 023445556 7899999999998
Q ss_pred hHHHHHHHHHh
Q 023490 190 AQADNYEKIFS 200 (281)
Q Consensus 190 ~~~~vl~ei~~ 200 (281)
.+.++..+.+.
T Consensus 75 ~h~~~~~~al~ 85 (323)
T 1xea_A 75 VHSTLAAFFLH 85 (323)
T ss_dssp GHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 88777665443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=75.07 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=63.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~~ 189 (281)
.+|||||+|.||...++.++.. .+++++...+......+.+.+.|+.. +.+.+|+++ +.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence 5799999999999999998875 15666533333333345566677753 679999987 799999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEE
Q 023490 190 AQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~ 210 (281)
.+.++..+.+. .|..|++
T Consensus 77 ~h~~~~~~al~---aGkhVl~ 94 (359)
T 3e18_A 77 SHKELAISALE---AGKHVVC 94 (359)
T ss_dssp GHHHHHHHHHH---TTCEEEE
T ss_pred HHHHHHHHHHH---CCCCEEe
Confidence 88777665443 4554443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=72.15 Aligned_cols=118 Identities=18% Similarity=0.182 Sum_probs=68.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHH--HCCceec-CC--CcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTEE-NG--TLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~--~~G~~~~-~~--t~~~~~E~l~~ADVViL 184 (281)
++|+|||.|.||..+|..|... |+ +|.+.++...+....+. +.+.... +. ...+..+.++++|+|++
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii 81 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 81 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEE
Confidence 8999999999999999999988 88 88888776322111121 2222100 00 01112467899999999
Q ss_pred ccCChhHH----------------HHHHHHHhcCCCCcEEE-EeCCcchh-hhhhcccCCCCCceEEEecc
Q 023490 185 LISDAAQA----------------DNYEKIFSCMKPNSILG-LSHGFLLG-HLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 185 avP~~~~~----------------~vl~ei~~~mKpgaILi-~aaG~~l~-~l~~~~~~~~~~i~VIrvmP 237 (281)
+++..... ++++++.++ .++++|+ +.-|+... .+......+|++ +|+....
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~-~vig~~~ 150 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPEN-QIFGSGT 150 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTT-SEEECTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHH-HEeeccc
Confidence 99543211 344455554 5777654 56666643 222111134543 6776533
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.6e-05 Score=71.56 Aligned_cols=88 Identities=24% Similarity=0.197 Sum_probs=59.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH-----------CCceecCCCcCCHHhhcCcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-----------AGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~-----------~G~~~~~~t~~~~~E~l~~A 179 (281)
++|+|||.|.||.++|..|... |+ +|.++++..+.....+.+ ..+.. ..+. +.+++|
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~----t~d~-~a~~~a 73 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG----TDDY-ADISGS 73 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE----ESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE----CCCH-HHhCCC
Confidence 7899999999999999999988 88 888888765322221110 01221 2455 789999
Q ss_pred CEEEEccC--------------Chh--HHHHHHHHHhcCCCCcEEEEe
Q 023490 180 DLVLLLIS--------------DAA--QADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 180 DVViLavP--------------~~~--~~~vl~ei~~~mKpgaILi~a 211 (281)
|+|+++++ .+. ..++++++.++. |+++|+++
T Consensus 74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~ 120 (317)
T 2ewd_A 74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICI 120 (317)
T ss_dssp SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEe
Confidence 99999993 211 123556666664 68876544
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.99 E-value=9.2e-06 Score=74.47 Aligned_cols=90 Identities=13% Similarity=0.095 Sum_probs=62.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|.||...++.++.. .+.+++++ ++++..++..+.+++.|+.. .+.+.+|+++ +.|+|++++|+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~---~~~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTL---PRSEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS---CTTTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhC---CCCCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999998865 00124544 45554444445566677631 2578999987 69999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~ 210 (281)
..+.++..+.+. .|..|++
T Consensus 77 ~~H~~~~~~al~---~GkhVl~ 95 (334)
T 3ohs_X 77 PQHKAAVMLCLA---AGKAVLC 95 (334)
T ss_dssp GGHHHHHHHHHH---TTCEEEE
T ss_pred HHHHHHHHHHHh---cCCEEEE
Confidence 988777665443 4554443
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.2e-05 Score=78.95 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=74.9
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----------CCceec-C-----CCcCCH
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-N-----GTLGDI 172 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----------~G~~~~-~-----~t~~~~ 172 (281)
-+++|||||.|.||..+|..+... |++|++.+...+ ..+.+.+ .+...+ . -+..+.
T Consensus 315 ~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (742)
T 3zwc_A 315 PVSSVGVLGLGTMGRGIAISFARV------GISVVAVESDPK-QLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSS 387 (742)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSHH-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESC
T ss_pred cccEEEEEcccHHHHHHHHHHHhC------CCchhcccchHh-hhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCc
Confidence 369999999999999999999988 999998886632 1111110 000000 0 001223
Q ss_pred HhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhh
Q 023490 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQS 221 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~ 221 (281)
.+.+++||+||=++|..-.. +++.++-+.++|++||. ..+++.+..+.+
T Consensus 388 ~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~ 439 (742)
T 3zwc_A 388 TKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS 439 (742)
T ss_dssp GGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT
T ss_pred HHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh
Confidence 35588999999999986654 38899999999999985 678888877764
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=8.9e-07 Score=81.26 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=62.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.|.+|++++..|.+. |. +|.+++|..++..+.+. .+.. ..+.+..++++++|+||.
T Consensus 113 ~~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~--~~~~--~~~~~~~~~~~~aDiVIn 181 (277)
T 3don_A 113 EGIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWSL--NINK--INLSHAESHLDEFDIIIN 181 (277)
T ss_dssp TTGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCCS--CCEE--ECHHHHHHTGGGCSEEEE
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHH--hccc--ccHhhHHHHhcCCCEEEE
Confidence 35789 9999999999999999999998 98 88899887554322221 1211 013356677899999999
Q ss_pred ccCChhHHH---HHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQAD---NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~---vl~ei~~~mKpgaILi~a 211 (281)
+||.....+ .++ ...++++.+++++
T Consensus 182 aTp~Gm~~~~~~~l~--~~~l~~~~~V~D~ 209 (277)
T 3don_A 182 TTPAGMNGNTDSVIS--LNRLASHTLVSDI 209 (277)
T ss_dssp CCC-------CCSSC--CTTCCSSCEEEES
T ss_pred CccCCCCCCCcCCCC--HHHcCCCCEEEEe
Confidence 999753221 111 2446777777765
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-05 Score=72.95 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=60.5
Q ss_pred cCCCcEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVVi 183 (281)
+..|.+|||||+|.||+. .+..++.. .+.+|+ ++++..++..+.+++.|+.. .+.+.+|+++ +.|+|+
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~-----~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV~ 91 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDA-----ENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAVY 91 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHC-----SSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEEE
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEEE
Confidence 345679999999999986 46666654 145665 45555444456677788742 2679999985 589999
Q ss_pred EccCChhHHHHHHHHHhc
Q 023490 184 LLISDAAQADNYEKIFSC 201 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~ 201 (281)
+++|+..+.++..+.+..
T Consensus 92 I~tP~~~H~~~~~~al~a 109 (350)
T 4had_A 92 IPLPTSQHIEWSIKAADA 109 (350)
T ss_dssp ECSCGGGHHHHHHHHHHT
T ss_pred EeCCCchhHHHHHHHHhc
Confidence 999999888877655443
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.2e-05 Score=76.42 Aligned_cols=89 Identities=18% Similarity=0.180 Sum_probs=63.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVViL 184 (281)
.+|+| |+++|+|+|++|..+|+.|+++ |++|++.+....+ .+.+.+.|.. ..+.++++. +||+++.
T Consensus 171 ~~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVvvsD~~~~~-~~~a~~~ga~-----~v~~~ell~~~~DIliP 237 (355)
T 1c1d_A 171 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADTDTER-VAHAVALGHT-----AVALEDVLSTPCDVFAP 237 (355)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHTTCE-----ECCGGGGGGCCCSEEEE
T ss_pred CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCCccH-HHHHHhcCCE-----EeChHHhhcCccceecH
Confidence 37999 9999999999999999999999 9999866654322 3445566655 346778877 9999985
Q ss_pred ccCChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
|- ...+++ +.++.|| ..+|+-.+
T Consensus 238 ~A----~~~~I~~~~~~~lk-~~iVie~A 261 (355)
T 1c1d_A 238 CA----MGGVITTEVARTLD-CSVVAGAA 261 (355)
T ss_dssp CS----CSCCBCHHHHHHCC-CSEECCSC
T ss_pred hH----HHhhcCHHHHhhCC-CCEEEECC
Confidence 32 222444 5556776 45665433
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.6e-05 Score=69.43 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=68.6
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|+|+|+|.||+.+++.+.+. +.+++...+.... ...|+.. +.++++++ ++|+||-.+.|..
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a 66 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNL 66 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHH
Confidence 58999999999999999999887 5555443343222 1356654 56788888 9999997776655
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 191 ~~~vl~ei~~~mKpga-ILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
..+.+. ++.|. +|+-..|+..++++..... -+.+++ ...||..
T Consensus 67 ~~~~~~-----l~~g~~vVigTTG~s~e~~~~l~~a-a~~~~v-~~a~N~S 110 (243)
T 3qy9_A 67 LFPLLD-----EDFHLPLVVATTGEKEKLLNKLDEL-SQNMPV-FFSANMS 110 (243)
T ss_dssp HHHHHT-----SCCCCCEEECCCSSHHHHHHHHHHH-TTTSEE-EECSSCC
T ss_pred HHHHHH-----HhcCCceEeCCCCCCHHHHHHHHHH-HhcCCE-EEECCcc
Confidence 444443 66666 4555678875433221112 234555 6778875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00013 Score=59.31 Aligned_cols=99 Identities=12% Similarity=-0.022 Sum_probs=64.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH---HHHCCceecCCCcCC---HHhh-cCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAAGFTEENGTLGD---IYET-ISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~---A~~~G~~~~~~t~~~---~~E~-l~~ADVViL 184 (281)
++|.|+|+|.+|+.+++.|.+. |++|++.++...+..+. ....|+..-.+...+ +.++ ++++|+|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 6899999999999999999998 99998888753221111 223343321122223 2344 889999999
Q ss_pred ccCChhHHHHHHHHHhcCCC-CcEEEEeCCcch
Q 023490 185 LISDAAQADNYEKIFSCMKP-NSILGLSHGFLL 216 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKp-gaILi~aaG~~l 216 (281)
++++......+......+.+ ..++..+.+...
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~ 110 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKN 110 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGG
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence 99987665555555555544 346666665543
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.1e-05 Score=68.91 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=62.0
Q ss_pred cEEEEEccCchHH-HHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCC-ceecCCCcCCHHhhcC--cCCEEEEcc
Q 023490 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG-FTEENGTLGDIYETIS--GSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~-AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G-~~~~~~t~~~~~E~l~--~ADVViLav 186 (281)
.+|||||+|.+|. .++..++.. +++++ ++++..++..+.+++.+ ... +.+.+|+++ +.|+|++++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 74 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVPF----AASAEQLITDASIDLIACAV 74 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCCB----CSCHHHHHTCTTCCEEEECS
T ss_pred cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCcc----cCCHHHHhhCCCCCEEEEeC
Confidence 6899999999996 677877655 78764 66666555556667764 332 678999987 699999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi 209 (281)
|+..+.++..+.+. .|..|+
T Consensus 75 p~~~h~~~~~~al~---aGkhVl 94 (336)
T 2p2s_A 75 IPCDRAELALRTLD---AGKDFF 94 (336)
T ss_dssp CGGGHHHHHHHHHH---TTCEEE
T ss_pred ChhhHHHHHHHHHH---CCCcEE
Confidence 99888776655433 465443
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.92 E-value=2.9e-05 Score=71.92 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=62.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|.||..+++.+... .+++++ ++++..++..+.+.+.|+......+.+.+++++ +.|+|++++|+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 81 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 81 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence 6899999999999999998874 145654 455543333445666674100012568999986 59999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~ 210 (281)
..+.++..+. ++.|..|++
T Consensus 82 ~~h~~~~~~a---l~aGk~V~~ 100 (362)
T 1ydw_A 82 SLHVEWAIKA---AEKGKHILL 100 (362)
T ss_dssp GGHHHHHHHH---HTTTCEEEE
T ss_pred HHHHHHHHHH---HHCCCeEEE
Confidence 8887766654 445665544
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.91 E-value=9.1e-06 Score=73.89 Aligned_cols=84 Identities=12% Similarity=0.116 Sum_probs=56.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
++|||||+|+||..+++.+++. .+++++ ++++..+ ..+...+. +.. +.+.+|+++ ++|+|++++|+
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~~~-~~~~~~~~-~~~----~~~~~~~l~~~~~D~V~i~tp~ 79 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSNPD-NLALVPPG-CVI----ESDWRSVVSAPEVEAVIIATPP 79 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESCHH-HHTTCCTT-CEE----ESSTHHHHTCTTCCEEEEESCG
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCCHH-HHHHHHhh-Ccc----cCCHHHHhhCCCCCEEEEeCCh
Confidence 6899999999999999999875 156654 5554421 11111111 222 458889985 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi 209 (281)
..+.+++.+.+ +.|..|+
T Consensus 80 ~~h~~~~~~al---~~Gk~v~ 97 (315)
T 3c1a_A 80 ATHAEITLAAI---ASGKAVL 97 (315)
T ss_dssp GGHHHHHHHHH---HTTCEEE
T ss_pred HHHHHHHHHHH---HCCCcEE
Confidence 88877766543 3465443
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.8e-05 Score=70.53 Aligned_cols=121 Identities=20% Similarity=0.170 Sum_probs=69.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC--C------ceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G------FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~--G------~~~~~~t~~~~~E~l~~ADV 181 (281)
++|+|||.|.||.++|..|... |+ +|.++++...+....+.+. + .... ..+ .+.+++||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~---~~~-~~a~~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVW---HGG-HSELADAQV 70 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEE---EEC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEE---ECC-HHHhCCCCE
Confidence 5899999999999999999888 87 8888877633222222221 1 1110 123 467999999
Q ss_pred EEEccCChhH----------------HHHHHHHHhcCCCCcEEEEe-CCcch--hhhhhcccCCCCCceEEEeccCCCCh
Q 023490 182 VLLLISDAAQ----------------ADNYEKIFSCMKPNSILGLS-HGFLL--GHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 182 ViLavP~~~~----------------~~vl~ei~~~mKpgaILi~a-aG~~l--~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
|+++++.... .++++++.++ .|+++|+++ -.+.+ ..+.+ ..|+ .+||......+-.
T Consensus 71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~~~~~~~~~---~~~~-~rviG~gt~Ld~~ 145 (304)
T 2v6b_A 71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQ---LAPG-QPVIGSGTVLDSA 145 (304)
T ss_dssp EEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHHHHHHHHHH---HSCS-SCEEECTTHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchHHHHHHHHH---hCCh-hcEEeCCcCchHH
Confidence 9999954321 2233445555 588876653 33333 22333 2233 4787775444433
Q ss_pred hhHHh
Q 023490 243 SVRRL 247 (281)
Q Consensus 243 ~vr~~ 247 (281)
..|++
T Consensus 146 r~~~~ 150 (304)
T 2v6b_A 146 RFRHL 150 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=74.25 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=62.3
Q ss_pred cEEEEEccC-chHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 023490 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP 187 (281)
.+|||||+| .||..++..+... .+++++ ++++..++..+.+.+.|+.. +.+.+|++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence 689999999 9999999999875 156665 44444333334566677764 6799999875 999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi 209 (281)
+..+.++..+.+. .|..|+
T Consensus 74 ~~~H~~~~~~al~---aGk~Vl 92 (387)
T 3moi_A 74 HQFHCEHVVQASE---QGLHII 92 (387)
T ss_dssp GGGHHHHHHHHHH---TTCEEE
T ss_pred cHHHHHHHHHHHH---CCCcee
Confidence 9888776665544 345444
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.5e-06 Score=74.85 Aligned_cols=93 Identities=15% Similarity=0.008 Sum_probs=62.7
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.++| +++|||.|.||++++..|.+. |. +|.+++|..++..+.+.+.+... +.++.+.++++|+||.+
T Consensus 106 ~~~~--~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVIna 173 (253)
T 3u62_A 106 EVKE--PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNT 173 (253)
T ss_dssp CCCS--SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEEC
T ss_pred CCCC--eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEEC
Confidence 3566 899999999999999999998 88 89999987433222222222221 45677889999999999
Q ss_pred cCChhHH--HHHHHHHhcCCCCcEEEE-eCC
Q 023490 186 ISDAAQA--DNYEKIFSCMKPNSILGL-SHG 213 (281)
Q Consensus 186 vP~~~~~--~vl~ei~~~mKpgaILi~-aaG 213 (281)
+|..... ..++ ...++++.+|++ +.+
T Consensus 174 tp~gm~p~~~~i~--~~~l~~~~~V~Divy~ 202 (253)
T 3u62_A 174 TSVGMKGEELPVS--DDSLKNLSLVYDVIYF 202 (253)
T ss_dssp SSTTTTSCCCSCC--HHHHTTCSEEEECSSS
T ss_pred CCCCCCCCCCCCC--HHHhCcCCEEEEeeCC
Confidence 9863211 1122 123567888775 444
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.2e-06 Score=76.14 Aligned_cols=92 Identities=14% Similarity=0.085 Sum_probs=63.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhcCcCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD 180 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G----~~~~~~t~~~~~E~l~~AD 180 (281)
.+++| +++.|||.|.+|++++..|.+. |. +|.+++|..++..+.+.+.+ +. ..+.+++.+++|
T Consensus 122 ~~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~~~~-----~~~~~~l~~~aD 189 (281)
T 3o8q_A 122 VLLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYGEVK-----AQAFEQLKQSYD 189 (281)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGSCEE-----EEEGGGCCSCEE
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccCCee-----EeeHHHhcCCCC
Confidence 35789 9999999999999999999998 96 89999988655444454433 22 225566668999
Q ss_pred EEEEccCChhHHH--HHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQAD--NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~--vl~ei~~~mKpgaILi~a 211 (281)
+||.+||.....+ .++ ...++++.+++|+
T Consensus 190 iIInaTp~gm~~~~~~l~--~~~l~~~~~V~Dl 220 (281)
T 3o8q_A 190 VIINSTSASLDGELPAID--PVIFSSRSVCYDM 220 (281)
T ss_dssp EEEECSCCCC----CSCC--GGGEEEEEEEEES
T ss_pred EEEEcCcCCCCCCCCCCC--HHHhCcCCEEEEe
Confidence 9999999864322 111 1235556666544
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.5e-05 Score=71.11 Aligned_cols=84 Identities=11% Similarity=0.203 Sum_probs=57.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
.+|+|||+|+||+.+++.+.+. .+++++ ++++...+ +.+ .|+.. +.++++++.++|+|++++|+..
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~--~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~ 70 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL--DTK--TPVFD----VADVDKHADDVDVLFLCMGSAT 70 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC--SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTT
T ss_pred CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH--hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHH
Confidence 5899999999999999999875 146654 45554332 111 45542 4577888889999999999987
Q ss_pred HHHHHHHHHhcCCCCcEEEEe
Q 023490 191 QADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~a 211 (281)
+.+.+.. .++.|..+++.
T Consensus 71 h~~~~~~---al~aG~~Vv~e 88 (320)
T 1f06_A 71 DIPEQAP---KFAQFACTVDT 88 (320)
T ss_dssp HHHHHHH---HHTTTSEEECC
T ss_pred HHHHHHH---HHHCCCEEEEC
Confidence 6554443 34557766554
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.79 E-value=7e-05 Score=68.62 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=55.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
.+|||||+|+||+.+++.+++. .+++++ ++++..+ .+++.|+.. ..+.++.+. .+.|+|++++|+..
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~~~----~~~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~ 77 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRNPA----EVPFELQPF--RVVSDIEQL-ESVDVALVCSPSRE 77 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC-----------CCTTS--CEESSGGGS-SSCCEEEECSCHHH
T ss_pred CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCCHH----HHHHcCCCc--CCHHHHHhC-CCCCEEEECCCchh
Confidence 5899999999999999999874 167766 4554432 222255431 113455555 78999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEe
Q 023490 191 QADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~a 211 (281)
+.++..+.+ +.|..+++.
T Consensus 78 h~~~~~~al---~aG~~Vi~e 95 (304)
T 3bio_A 78 VERTALEIL---KKGICTADS 95 (304)
T ss_dssp HHHHHHHHH---TTTCEEEEC
T ss_pred hHHHHHHHH---HcCCeEEEC
Confidence 877666544 446666654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00014 Score=67.64 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=47.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH-------HCCceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR-------AAGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~-------~~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
++|+|||.|.+|.++|..|... |+ +|.++++..++....+. ..+....-....+.++.+++||+|+
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi 83 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEE
Confidence 6899999999999999999988 87 88878776432221111 1111100001257888999999999
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
+++
T Consensus 84 ~a~ 86 (331)
T 1pzg_A 84 VTA 86 (331)
T ss_dssp ECC
T ss_pred Ecc
Confidence 998
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.77 E-value=7.4e-05 Score=64.76 Aligned_cols=93 Identities=12% Similarity=0.194 Sum_probs=62.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-cCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E~-l~~ADVViLavP 187 (281)
++|.|+|+|.+|..+++.|.+. |+ |++.++... ..+.+. .|+..-.+...+.+ ++ ++++|.|+++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vid~~~~-~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS------EV-FVLAEDENV-RKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS------EE-EEEESCGGG-HHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHHHHHHHHHHhC------Ce-EEEEECCHH-HHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 7899999999999999999988 88 777766533 334444 56432222233333 33 789999999999
Q ss_pred ChhHHHHHHHHHhcCCCC-cEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPN-SILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpg-aILi~aaG 213 (281)
+......+......+.++ .++..+..
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 876554444555566676 45555543
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00014 Score=67.53 Aligned_cols=89 Identities=19% Similarity=0.150 Sum_probs=57.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----------C-CceecCCCcCCHHhhcCcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------A-GFTEENGTLGDIYETISGS 179 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----------~-G~~~~~~t~~~~~E~l~~A 179 (281)
++|+|||.|.||.++|..+... |+ +|.++++..++....+.. . .+.. ..+. +.+++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~----t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG----ENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE----ESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE----CCCH-HHHCCC
Confidence 6999999999999999999888 88 887777764322211110 0 1221 2466 789999
Q ss_pred CEEEEcc--CCh-------------h-HHHHHHHHHhcCCCCcEEEEeC
Q 023490 180 DLVLLLI--SDA-------------A-QADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 180 DVViLav--P~~-------------~-~~~vl~ei~~~mKpgaILi~aa 212 (281)
|+||+++ |.. . ..++++++.++. |+++|+++.
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~t 131 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICIT 131 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 9999998 431 0 112344455554 788776553
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.3e-05 Score=71.99 Aligned_cols=89 Identities=11% Similarity=0.027 Sum_probs=64.0
Q ss_pred cEEEEEccCc---hHHHHHHHHHhhhhhccCC-cEEE--EEecCCcccHHHHHHCCceecCCCcCCHHhhcCc-------
Q 023490 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVK--VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (281)
Q Consensus 112 ktIGIIG~G~---mG~AiA~~Lra~~~~~~~G-~~Vi--ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~------- 178 (281)
.+|||||+|. ||...+..++.. + ++++ ++++..++..+.+++.|+.. ...+.+.+|++++
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 85 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD------NTFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADG 85 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG------GSEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC------CCeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCC
Confidence 5899999999 999999988776 4 5665 34555444455677788731 0126789999875
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
.|+|++++|+..+.++..+.+. .|..|++
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~---aGkhVl~ 114 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALE---AGLHVVC 114 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHH---TTCEEEE
T ss_pred CCEEEECCCcHHHHHHHHHHHH---CCCeEEE
Confidence 9999999999988877665544 3555443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.75 E-value=2.8e-05 Score=69.95 Aligned_cols=94 Identities=21% Similarity=0.094 Sum_probs=62.3
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCc--eecCCCcCCHHhhc-CcCCEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETI-SGSDLVL 183 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~--~~~~~t~~~~~E~l-~~ADVVi 183 (281)
+++| +++.|+|.|.||.++++.|.+. |.+|.+++|..++..+.+.+.+. ... ..+.+++. .++|+||
T Consensus 116 ~l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~~~~---~~~~~~~~~~~~DivV 185 (271)
T 1nyt_A 116 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ---ALSMDELEGHEFDLII 185 (271)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE---ECCSGGGTTCCCSEEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccCCee---EecHHHhccCCCCEEE
Confidence 5789 9999999999999999999998 99999998875443444444332 000 12333433 5899999
Q ss_pred EccCChhHHHHHHHH-HhcCCCCcEEEEe
Q 023490 184 LLISDAAQADNYEKI-FSCMKPNSILGLS 211 (281)
Q Consensus 184 LavP~~~~~~vl~ei-~~~mKpgaILi~a 211 (281)
.++|.....++ ..+ ...++++.+++++
T Consensus 186 n~t~~~~~~~~-~~i~~~~l~~~~~v~D~ 213 (271)
T 1nyt_A 186 NATSSGISGDI-PAIPSSLIHPGIYCYDM 213 (271)
T ss_dssp ECCSCGGGTCC-CCCCGGGCCTTCEEEES
T ss_pred ECCCCCCCCCC-CCCCHHHcCCCCEEEEe
Confidence 99997654211 001 1225666666654
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00022 Score=65.48 Aligned_cols=70 Identities=19% Similarity=0.115 Sum_probs=47.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH--HCC-------ceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~--~~G-------~~~~~~t~~~~~E~l~~ADVV 182 (281)
|+|+|||.|.||.++|..|... +.|.+|.++++...+....+. ... .... ...+.++ +++||+|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~--~t~d~~~-l~~aDvV 73 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT--GSNDYAD-TANSDIV 73 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEE--EESCGGG-GTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEE--ECCCHHH-HCCCCEE
Confidence 5899999999999999998874 226788888876543222211 111 0110 1245656 9999999
Q ss_pred EEccCC
Q 023490 183 LLLISD 188 (281)
Q Consensus 183 iLavP~ 188 (281)
++++|.
T Consensus 74 iiav~~ 79 (310)
T 1guz_A 74 IITAGL 79 (310)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999974
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=5.1e-05 Score=72.72 Aligned_cols=90 Identities=10% Similarity=0.104 Sum_probs=60.8
Q ss_pred cEEEEEccCchHH-HHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceec-CCCcCCHHhhcC--cCCEEEEcc
Q 023490 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS--GSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~-AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~--~ADVViLav 186 (281)
.+|||||+|.||. .+++.++.. .+++++ ++++...+..+.+++.|+... ...+.+.+|+++ +.|+|++++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 6899999999997 899988764 145654 455543333344566675310 002568899987 799999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi 209 (281)
|+..+.++..+.+ +.|..|+
T Consensus 159 p~~~h~~~~~~al---~aGk~Vl 178 (433)
T 1h6d_A 159 PNSLHAEFAIRAF---KAGKHVM 178 (433)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred CchhHHHHHHHHH---HCCCcEE
Confidence 9998877666544 3455444
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=71.68 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=61.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH-------------------HHHHCC-ceecCCCcC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-------------------EARAAG-FTEENGTLG 170 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~-------------------~A~~~G-~~~~~~t~~ 170 (281)
|++|+|||+|-+|..+|..+... |++|+..+.. ++..+ .+.+.| +.. ..
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~------G~~V~g~Did-~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~----tt 89 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL------GHRVVGYDVN-PSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF----AE 89 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----CS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE----Ec
Confidence 48999999999999999999988 9998755543 22221 112223 121 34
Q ss_pred CHHhhcCcCCEEEEccCCh----------hHHHHHHHHHhcCC---CCcEEEEe
Q 023490 171 DIYETISGSDLVLLLISDA----------AQADNYEKIFSCMK---PNSILGLS 211 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~----------~~~~vl~ei~~~mK---pgaILi~a 211 (281)
+.+++++++|++|+++|.. ......+.+.++|+ ++++|++-
T Consensus 90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~e 143 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVK 143 (444)
T ss_dssp SHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEEC
T ss_pred CHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 7889999999999998731 12234456667775 56787753
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00017 Score=69.22 Aligned_cols=95 Identities=14% Similarity=0.166 Sum_probs=67.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---Hhh-cCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~---~E~-l~~ADVViLavP 187 (281)
++|.|||+|.+|+.+++.|++. |++|++.++.. ...+.+++.|+..-.+...+. .++ ++++|+|+++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvId~d~-~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVLDHDP-DHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEECCH-HHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEECCH-HHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 6799999999999999999999 99988877664 345666777764321223333 233 789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~aaG 213 (281)
+......+-.....+.|+. +|.-+..
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 8766555555566666764 4444543
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00013 Score=67.99 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=61.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecC--------------CCcCCHHhhc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEEN--------------GTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~--------------~t~~~~~E~l 176 (281)
.+|||||+|.||+.+++.+... .++++. +.++......+.+++.|+.... ....+.++++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 5899999999999999999865 145654 3444333223445555532100 0134788888
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
.+.|+|++++|...+.+..... ++.|..|++.+..
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~---l~aGk~Vi~sap~ 112 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLY---EKAGVKAIFQGGE 112 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHH---HHHTCEEEECTTS
T ss_pred cCCCEEEECCCccccHHHHHHH---HHcCCceEeeccc
Confidence 8999999999998776655533 3346666666543
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.68 E-value=6.5e-05 Score=68.76 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=60.5
Q ss_pred EEEEEccCchHHHHHHHHHhhhh--hccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~--~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
+|||||+|.||...++.++..-. ....+.+|. ++++..++..+.+++.|+.. .+.+.+|+++ +.|+|++++|
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~tP 84 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCTP 84 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECSC
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 68999999999998888876400 000012444 45555444445567777642 2578999986 4899999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi 209 (281)
+..+.++..+.+. .|..|.
T Consensus 85 ~~~H~~~~~~al~---aGkhVl 103 (390)
T 4h3v_A 85 GDSHAEIAIAALE---AGKHVL 103 (390)
T ss_dssp GGGHHHHHHHHHH---TTCEEE
T ss_pred hHHHHHHHHHHHH---cCCCce
Confidence 9988876665443 355444
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.67 E-value=2.7e-05 Score=71.02 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=62.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhc-CcCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETI-SGSD 180 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G---~~~~~~t~~~~~E~l-~~AD 180 (281)
.+++| +++.|+|.|-+|++++..|.+. |. +|.+++|..++..+.+.+.+ +. ..+.+++- .++|
T Consensus 116 ~~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~-----~~~~~~l~~~~~D 183 (272)
T 3pwz_A 116 EPLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR-----ISRYEALEGQSFD 183 (272)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE-----EECSGGGTTCCCS
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee-----EeeHHHhcccCCC
Confidence 35789 9999999999999999999998 96 89999987655455555543 22 12333432 7899
Q ss_pred EEEEccCChhHHH--HHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQAD--NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~--vl~ei~~~mKpgaILi~a 211 (281)
+||.+||.....+ .+. ...++++.+++++
T Consensus 184 ivInaTp~gm~~~~~~i~--~~~l~~~~~V~Dl 214 (272)
T 3pwz_A 184 IVVNATSASLTADLPPLP--ADVLGEAALAYEL 214 (272)
T ss_dssp EEEECSSGGGGTCCCCCC--GGGGTTCSEEEES
T ss_pred EEEECCCCCCCCCCCCCC--HHHhCcCCEEEEe
Confidence 9999999754211 111 1234566666544
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.67 E-value=8.1e-05 Score=68.18 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=61.5
Q ss_pred cCCCc--EEEEEccCchHHHHHHHHHhhhhh--ccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCC
Q 023490 108 FNGIN--QIGVIGWGSQGPAQAQNLRDSLAE--AKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSD 180 (281)
Q Consensus 108 l~G~k--tIGIIG~G~mG~AiA~~Lra~~~~--~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~AD 180 (281)
+..|| +|||||+|.||+..++.++....- .-.+.+|+ ++++..++..+.+++.|+.. .+.+.+|+++ +.|
T Consensus 20 ~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iD 96 (393)
T 4fb5_A 20 FQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPEVD 96 (393)
T ss_dssp ----CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTTCC
T ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCCCc
Confidence 44554 699999999999888877653100 00134554 55655555556677888742 2678999986 579
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
+|++++|+..+.++..+.+. .|..|.
T Consensus 97 aV~IatP~~~H~~~a~~al~---aGkhVl 122 (393)
T 4fb5_A 97 VVSVTTPNQFHAEMAIAALE---AGKHVW 122 (393)
T ss_dssp EEEECSCGGGHHHHHHHHHH---TTCEEE
T ss_pred EEEECCChHHHHHHHHHHHh---cCCeEE
Confidence 99999999988887665444 355444
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.66 E-value=9.4e-05 Score=68.59 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=61.8
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||.|. +|..+|+.|... |..|.++.+. ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 210 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence 47999 9999999988 699999999998 9998887643 1267899999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. ++. ..++|||++|++++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (285)
T 3l07_A 211 AVGKPN---FIT--ADMVKEGAVVIDVG 233 (285)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCcEEEEec
Confidence 998532 333 24579999999875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.66 E-value=7.3e-05 Score=69.04 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=60.9
Q ss_pred cCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 108 l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++| +++.|||.|+ +|..+|+.|... |..|.++.++ ..++++.+++||+||.++
T Consensus 148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence 899 9999999986 899999999998 9999888653 137889999999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+-.. ++. ..++|||++|++++
T Consensus 202 g~p~---~I~--~~~vk~GavVIDvg 222 (276)
T 3ngx_A 202 GRPG---FLN--REMVTPGSVVIDVG 222 (276)
T ss_dssp SCTT---CBC--GGGCCTTCEEEECC
T ss_pred CCCc---ccc--HhhccCCcEEEEec
Confidence 8633 333 24579999999875
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.66 E-value=9.5e-05 Score=68.57 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=62.0
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.|. .|+.+|+.|... |..|.+..+. ..++++.+++||+||.
T Consensus 156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 209 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence 57899 9999999988 699999999998 9999888653 1267899999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. ++. ..++|||++|++++
T Consensus 210 Avg~p~---~I~--~~~vk~GavVIDVg 232 (285)
T 3p2o_A 210 AAGCVN---LLR--SDMVKEGVIVVDVG 232 (285)
T ss_dssp CSSCTT---CBC--GGGSCTTEEEEECC
T ss_pred CCCCCC---cCC--HHHcCCCeEEEEec
Confidence 998532 333 24579999999875
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.66 E-value=6.4e-05 Score=69.24 Aligned_cols=92 Identities=12% Similarity=0.207 Sum_probs=67.0
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.++.|+|. |+||+.+++++++. |+++++...+..... .-.|+.. +.+++|+.+ ..|++++++|+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGGQ---NVHGVPV----FDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence 45788898 99999999999998 888444443321000 1146664 678999988 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
....+++++.... ....+|++..||...
T Consensus 81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~~ 108 (294)
T 2yv1_A 81 PFAKDAVFEAIDA-GIELIVVITEHIPVH 108 (294)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHH
Confidence 9888888876654 334466778898753
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.6e-05 Score=71.66 Aligned_cols=87 Identities=15% Similarity=0.054 Sum_probs=57.3
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP 187 (281)
.+|||||+|.||.. +++.+++. .+.+++ ++++...+..+.+.+.+.. ..+.+.+|++++ .|+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDI---PVLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSC---CEESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCC---cccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999995 88988764 156665 4554432222223333322 125689999975 499999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi 209 (281)
+..+.++..+.+. .|..|+
T Consensus 78 ~~~H~~~~~~al~---aGkhVl 96 (359)
T 3m2t_A 78 PQLHFEMGLLAMS---KGVNVF 96 (359)
T ss_dssp HHHHHHHHHHHHH---TTCEEE
T ss_pred cHHHHHHHHHHHH---CCCeEE
Confidence 9888777665443 355443
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.65 E-value=7.1e-05 Score=71.22 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=62.5
Q ss_pred cEEEEEccCc---hHHHHHHHHHhhhhhccCC-cEEE--EEecCCcccHHHHHHCCceecCCCcCCHHhhcCc-------
Q 023490 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVK--VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (281)
Q Consensus 112 ktIGIIG~G~---mG~AiA~~Lra~~~~~~~G-~~Vi--ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~------- 178 (281)
.+|||||+|. ||...+..++.. + ++++ ++++..++..+.+++.|+.. ...+.+.+|++++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence 5899999999 999999988776 4 5665 34554444445567778731 0126789999876
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
.|+|++++|+..+.++..+.+ +.|..|++
T Consensus 111 vD~V~I~tp~~~H~~~~~~al---~aGkhVl~ 139 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEFL---KRGIHVIC 139 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHHH---TTTCEEEE
T ss_pred CcEEEECCCcHHHHHHHHHHH---hCCCeEEE
Confidence 999999999988877666544 44665543
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0001 Score=67.91 Aligned_cols=92 Identities=13% Similarity=0.233 Sum_probs=66.4
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--c-CCEEEEccC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~-ADVViLavP 187 (281)
.++.|+|. |+||..+++++++. |+++++...+..... .-.|+.. +.+++|+.+ . .|++++++|
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGGS---EVHGVPV----YDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence 45777797 99999999999998 888544444321000 1246664 678899886 5 999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~ 217 (281)
+....+++++.... ....+|++..||...
T Consensus 81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~~ 109 (297)
T 2yv2_A 81 APFAPDAVYEAVDA-GIRLVVVITEGIPVH 109 (297)
T ss_dssp GGGHHHHHHHHHHT-TCSEEEECCCCCCHH
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCCHH
Confidence 99988888876654 233466778898753
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.62 E-value=7.9e-05 Score=69.57 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=61.2
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH--hhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~--E~l~~ADVV 182 (281)
.+++| +++.|||.|. +|..+|+.|... |..|.++.++.. +++ +.+++||+|
T Consensus 161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T~-------------------~l~l~~~~~~ADIV 214 (300)
T 4a26_A 161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGTS-------------------TEDMIDYLRTADIV 214 (300)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTSC-------------------HHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCCC-------------------CchhhhhhccCCEE
Confidence 57999 9999999987 799999999998 999988876321 344 889999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|.+++-.. ++. ..++|||++|++++
T Consensus 215 I~Avg~p~---~I~--~~~vk~GavVIDvg 239 (300)
T 4a26_A 215 IAAMGQPG---YVK--GEWIKEGAAVVDVG 239 (300)
T ss_dssp EECSCCTT---CBC--GGGSCTTCEEEECC
T ss_pred EECCCCCC---CCc--HHhcCCCcEEEEEe
Confidence 99999632 333 24579999999775
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=66.48 Aligned_cols=87 Identities=8% Similarity=0.027 Sum_probs=59.8
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhc----------Cc
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI----------SG 178 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l----------~~ 178 (281)
|.+|||||+ |.||...++.+++. +.+++...+........++.. +... +.+.++++ .+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAEF----FTEPEAFEAYLEDLRDRGEG 72 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESCHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCce----eCCHHHHHHHhhhhcccCCC
Confidence 579999999 78999999999987 776654433333222222222 2222 56888887 68
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
.|+|++++|+..+.++..+.+. .|..|++
T Consensus 73 vD~V~I~tP~~~H~~~~~~al~---aGkhVl~ 101 (312)
T 3o9z_A 73 VDYLSIASPNHLHYPQIRMALR---LGANALS 101 (312)
T ss_dssp CSEEEECSCGGGHHHHHHHHHH---TTCEEEE
T ss_pred CcEEEECCCchhhHHHHHHHHH---CCCeEEE
Confidence 9999999999988777765544 3555543
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.62 E-value=4.6e-05 Score=70.17 Aligned_cols=88 Identities=11% Similarity=0.151 Sum_probs=57.8
Q ss_pred cEEEEEccCchHHH-HHHHH-HhhhhhccCCcEEE-EEecCCcccHHHHHH-CCceecCCCcCCHHhhcCc--CCEEEEc
Q 023490 112 NQIGVIGWGSQGPA-QAQNL-RDSLAEAKSDIVVK-VGLRKGSRSFAEARA-AGFTEENGTLGDIYETISG--SDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~L-ra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~-~G~~~~~~t~~~~~E~l~~--ADVViLa 185 (281)
.+|||||+|.||.. .+..+ ... .+++++ ++++...+. +.+.+ .+... +.+.+|++++ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~-----~~~~l~av~d~~~~~~-~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRK-----DSWHVAHIFRRHAKPE-EQAPIYSHIHF----TSDLDEVLNDPDVKLVVVC 72 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCT-----TTEEEEEEECSSCCGG-GGSGGGTTCEE----ESCTHHHHTCTTEEEEEEC
T ss_pred eEEEEEecCHHHHHHHHHHHHhcC-----CCeEEEEEEcCCHhHH-HHHHhcCCCce----ECCHHHHhcCCCCCEEEEc
Confidence 68999999999996 44423 332 166766 555554332 22222 34443 5689999986 8999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+..+.++..+.+ +.|..|++-.
T Consensus 73 tp~~~h~~~~~~al---~aGk~Vl~EK 96 (345)
T 3f4l_A 73 THADSHFEYAKRAL---EAGKNVLVEK 96 (345)
T ss_dssp SCGGGHHHHHHHHH---HTTCEEEECS
T ss_pred CChHHHHHHHHHHH---HcCCcEEEeC
Confidence 99988877666543 4466665543
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00017 Score=66.32 Aligned_cols=86 Identities=8% Similarity=0.029 Sum_probs=59.1
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhc-----------C
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI-----------S 177 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l-----------~ 177 (281)
|.+|||||+ |.||...++.++.. +.+++...+........+... +... +.+.++++ +
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSEF----FTEFEFFLDHASNLKRDSAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESSHHHHHHHHHHHTTSTTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCcE----ECCHHHHHHhhhhhhhccCC
Confidence 579999999 79999999999987 776654443332222222222 2332 56888876 6
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
+.|+|++++|+..+.++..+.+.. |..|+
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~a---GkhVl 101 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRL---GCDVI 101 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHT---TCEEE
T ss_pred CCcEEEECCCcHHHHHHHHHHHHC---CCeEE
Confidence 799999999998888777655443 55444
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=66.54 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=59.0
Q ss_pred cEEEEEccCchHH-HHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHH---CCceecCCCcCCHHhhcCc--CCEEEE
Q 023490 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~-AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~---~G~~~~~~t~~~~~E~l~~--ADVViL 184 (281)
.+|||||+|.||. ..+..+++. .+++|+ ++++. ...+.+.+ .++.. +.+.+|++++ .|+|++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~--~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i 71 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH--VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITI 71 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT--CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC--HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEE
Confidence 5899999999998 566667654 156765 44444 33444555 45543 5789999986 899999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
++|+..+.++..+.+. .|..|++
T Consensus 72 ~tp~~~h~~~~~~al~---aGk~Vl~ 94 (349)
T 3i23_A 72 CTPAHTHYDLAKQAIL---AGKSVIV 94 (349)
T ss_dssp CSCGGGHHHHHHHHHH---TTCEEEE
T ss_pred eCCcHHHHHHHHHHHH---cCCEEEE
Confidence 9999888776665443 4555543
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2.4e-05 Score=73.60 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=65.5
Q ss_pred ccCCCcEEEEEccCch-HHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC----c--CCHHhhcCcC
Q 023490 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS 179 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~m-G~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t----~--~~~~E~l~~A 179 (281)
+++| +++.|||.|+| |..+|+.|... |..|.+++|...+..+.+.+.+......+ . .++++.+++|
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 7899 99999999986 99999999988 89999887753222222222221000000 1 3678999999
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|+||.+++-... ++. ..++|||++|++.+-
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 999999986321 133 123699999998764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.59 E-value=3.4e-05 Score=72.37 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=68.8
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce---ecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---EENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~---~~~~t~~~~~E~l~~ADVV 182 (281)
..+++ +++.|||.|.+|.++++.++.. |.+|++.++...+ .+.+.+.+.. ..+....++.+.++++|+|
T Consensus 163 ~~l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 234 (361)
T 1pjc_A 163 PGVKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVER-LSYLETLFGSRVELLYSNSAEIETAVAEADLL 234 (361)
T ss_dssp TTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHHGGGSEEEECCHHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHhhCceeEeeeCCHHHHHHHHcCCCEE
Confidence 35788 9999999999999999999998 9998888876433 3334433311 0000012456778899999
Q ss_pred EEccCChhH--HHH-HHHHHhcCCCCcEEEEeC
Q 023490 183 LLLISDAAQ--ADN-YEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 183 iLavP~~~~--~~v-l~ei~~~mKpgaILi~aa 212 (281)
|.+++.... ..+ .++.++.|+++.+|++.+
T Consensus 235 I~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 235 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp EECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred EECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 999975331 122 346678899999988764
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=67.17 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=61.2
Q ss_pred cEEEEEccC-chHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.+|||||+| .+|...+..++.. +.+++++ ++++..++..+.+++.|... .+.+.+|+++ +.|+|++++|
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 689999999 8999999998764 1156654 45554443334556667621 2678999986 5899999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi 209 (281)
+..+.++..+.+. .|..|+
T Consensus 92 ~~~H~~~~~~al~---aGkhVl 110 (340)
T 1zh8_A 92 VELNLPFIEKALR---KGVHVI 110 (340)
T ss_dssp GGGHHHHHHHHHH---TTCEEE
T ss_pred chHHHHHHHHHHH---CCCcEE
Confidence 9888776665443 355443
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=67.63 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=61.6
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||.|. .|..+|+.|... |..|.+..++ ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV 210 (286)
T ss_dssp CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence 57899 9999999987 799999999998 9999887543 1267889999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. ++. ..++|||++|++++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (286)
T 4a5o_A 211 AAGKPG---LVK--GEWIKEGAIVIDVG 233 (286)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCeEEEEec
Confidence 998532 333 24579999999875
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00011 Score=69.10 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=61.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhh---hccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLA---EAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~---~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLa 185 (281)
.+|||||+|.||+..+..++..-. +...+.+|+ ++++..++..+.+++.|+.. .+.+.+|+++ +.|+|+++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDIT 103 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEEC
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEEC
Confidence 379999999999999998876400 000123554 44554444445567777742 2678999985 58999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEE
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi 209 (281)
+|+..+.++..+.+. .|..|.
T Consensus 104 tp~~~H~~~~~~al~---aGkhVl 124 (412)
T 4gqa_A 104 SPNHLHYTMAMAAIA---AGKHVY 124 (412)
T ss_dssp SCGGGHHHHHHHHHH---TTCEEE
T ss_pred CCcHHHHHHHHHHHH---cCCCeE
Confidence 999988876665443 355443
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00041 Score=64.36 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=45.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH--HC-------CceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AA-------GFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~--~~-------G~~~~~~t~~~~~E~l~~ADV 181 (281)
++|+|||.|.||.++|..|... |+ +|.+.+....+....+. +. ..... ...+. +.+++||+
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~------g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~--~t~d~-~al~~aD~ 75 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS--GSNTY-DDLAGADV 75 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEE--EECCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999999988 87 87777655432211111 11 11110 12466 78999999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
||+++
T Consensus 76 Vi~a~ 80 (322)
T 1t2d_A 76 VIVTA 80 (322)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 99998
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=9.6e-05 Score=67.64 Aligned_cols=92 Identities=16% Similarity=0.009 Sum_probs=63.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+..| +++.|||.|-+|++++..|.+. |.+|.+++|..++..+.+ +.++.. .+.+++ .++|+||.+
T Consensus 114 ~~~~~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVIna 179 (269)
T 3phh_A 114 KQKNY-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINA 179 (269)
T ss_dssp C---C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEEC
T ss_pred HHcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEc
Confidence 33448 9999999999999999999998 889999999877666666 666542 233343 489999999
Q ss_pred cCChhHH-HHHH-H-HHhcCCCCcEEEEe
Q 023490 186 ISDAAQA-DNYE-K-IFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~-~vl~-e-i~~~mKpgaILi~a 211 (281)
+|..... ..+. + +...++++.+++|+
T Consensus 180 Tp~Gm~~~~~l~~~~l~~~l~~~~~v~D~ 208 (269)
T 3phh_A 180 TSASLHNELPLNKEVLKGYFKEGKLAYDL 208 (269)
T ss_dssp CTTCCCCSCSSCHHHHHHHHHHCSEEEES
T ss_pred ccCCCCCCCCCChHHHHhhCCCCCEEEEe
Confidence 9974221 1121 1 22235567777654
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00018 Score=67.17 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=62.3
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.|+ +|..+|+.|... |..|.++.+. ..++.+.+++||+||.
T Consensus 161 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 214 (301)
T 1a4i_A 161 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 214 (301)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEE
Confidence 47899 9999999996 699999999998 9998887533 2378899999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+++-.. ++. ..++|||++|++.+=
T Consensus 215 Avg~p~---~I~--~~~vk~GavVIDVgi 238 (301)
T 1a4i_A 215 ATGQPE---MVK--GEWIKPGAIVIDCGI 238 (301)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECCC
T ss_pred CCCCcc---cCC--HHHcCCCcEEEEccC
Confidence 999743 233 134789999998763
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00023 Score=66.34 Aligned_cols=87 Identities=7% Similarity=0.020 Sum_probs=60.6
Q ss_pred cEEEEEccCchHH-HHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 023490 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~-AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP 187 (281)
.+|||||+|.+|. .++..++.. +.+++ ++++..++..+.+++.|... .+.+.+|++++ .|+|++++|
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 5899999999995 567777665 78765 44444333345566776321 26799999976 899999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+..+.++..+.+. .|..|++
T Consensus 98 ~~~H~~~~~~al~---aGkhVl~ 117 (361)
T 3u3x_A 98 SSERAELAIRAMQ---HGKDVLV 117 (361)
T ss_dssp HHHHHHHHHHHHH---TTCEEEE
T ss_pred hHHHHHHHHHHHH---CCCeEEE
Confidence 9888776665443 4554443
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00031 Score=64.77 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=45.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCC-------CcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENG-------TLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~-------t~~~~~E~l~~ADVV 182 (281)
+||+|||.|.||.++|..+... |. +|.+.+.... ...+...++..... ...+..+.+++||+|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~l~Di~~~--~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvV 78 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANES--KAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLV 78 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHH--HHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCcc--hHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEE
Confidence 7999999999999999999887 64 7777766532 12221111110000 001345789999999
Q ss_pred EEccCCh
Q 023490 183 LLLISDA 189 (281)
Q Consensus 183 iLavP~~ 189 (281)
+++++..
T Consensus 79 iia~~~~ 85 (316)
T 1ldn_A 79 VICAGAN 85 (316)
T ss_dssp EECCSCC
T ss_pred EEcCCCC
Confidence 9997653
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=8.5e-05 Score=66.93 Aligned_cols=75 Identities=13% Similarity=0.002 Sum_probs=53.1
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCc--eecCCCcCCHHhhcC-cCCEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETIS-GSDLVL 183 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~--~~~~~t~~~~~E~l~-~ADVVi 183 (281)
+++| +++.|||.|.||++++..|.+. |.+|.+++|..++..+.+.+.+. ..+ ..+.+++.+ ++|+||
T Consensus 116 ~~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~~~~---~~~~~~~~~~~~DivI 185 (272)
T 1p77_A 116 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQ---AVSMDSIPLQTYDLVI 185 (272)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEE---EEEGGGCCCSCCSEEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccCCeE---EeeHHHhccCCCCEEE
Confidence 5789 9999999999999999999998 89999999875544444443321 000 123444434 899999
Q ss_pred EccCChhH
Q 023490 184 LLISDAAQ 191 (281)
Q Consensus 184 LavP~~~~ 191 (281)
.++|....
T Consensus 186 n~t~~~~~ 193 (272)
T 1p77_A 186 NATSAGLS 193 (272)
T ss_dssp ECCCC---
T ss_pred ECCCCCCC
Confidence 99998654
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00031 Score=65.43 Aligned_cols=87 Identities=16% Similarity=0.219 Sum_probs=58.2
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.+|||||+|.||.. .+..++.. .+++|+...+.+.+ ..+.+. +... +.+.+|+++ +.|+|++++|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEE--KVKRDLPDVTV----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 67777654 15666533333322 122333 4443 579999998 7999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+..+.++..+.+ +.|..|++=.
T Consensus 77 ~~~H~~~~~~al---~aGk~Vl~EK 98 (364)
T 3e82_A 77 NATHAPLARLAL---NAGKHVVVDK 98 (364)
T ss_dssp GGGHHHHHHHHH---HTTCEEEECS
T ss_pred hHHHHHHHHHHH---HCCCcEEEeC
Confidence 988877666543 3466555433
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00041 Score=66.34 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=58.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHH---HCCceecCCCcC----CHHhhcC--cCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEAR---AAGFTEENGTLG----DIYETIS--GSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~---~~G~~~~~~t~~----~~~E~l~--~ADV 181 (281)
.+|||||+|.||...++.+... .+++|+ ++++..++..+.++ +.|+.. ...+. +.+|+++ +.|+
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~ll~~~~vD~ 94 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKP-AKVFGNGNDDYKNMLKDKNIDA 94 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCC-CEEECSSTTTHHHHTTCTTCCE
T ss_pred ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCC-CceeccCCCCHHHHhcCCCCCE
Confidence 6899999999999999988764 156665 44444322222222 345310 00145 8999997 5899
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
|++++|+..+.++..+.+ +.|..|.
T Consensus 95 V~i~tp~~~h~~~~~~al---~aGkhV~ 119 (444)
T 2ixa_A 95 VFVSSPWEWHHEHGVAAM---KAGKIVG 119 (444)
T ss_dssp EEECCCGGGHHHHHHHHH---HTTCEEE
T ss_pred EEEcCCcHHHHHHHHHHH---HCCCeEE
Confidence 999999988877665543 3455444
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=67.04 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=61.6
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.|+ .|..+|+.|... |..|.++.+.. .++.+.+++||+||.
T Consensus 155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~t-------------------~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRFT-------------------KNLRHHVENADLLIV 208 (288)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSSC-------------------SCHHHHHHHCSEEEE
T ss_pred CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHhccCCEEEE
Confidence 47999 9999999997 599999999998 99998875431 377899999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. ++. ..++|||++|++.+
T Consensus 209 Avg~p~---lI~--~~~vk~GavVIDVg 231 (288)
T 1b0a_A 209 AVGKPG---FIP--GDWIKEGAIVIDVG 231 (288)
T ss_dssp CSCCTT---CBC--TTTSCTTCEEEECC
T ss_pred CCCCcC---cCC--HHHcCCCcEEEEcc
Confidence 999543 333 13469999999876
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0003 Score=65.23 Aligned_cols=85 Identities=11% Similarity=0.190 Sum_probs=57.9
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~--~ADVViLavP 187 (281)
.+|||||+|.||.. .+..++.. .+++|+...+.+.. +.+.+. +... +.+.+|+++ +.|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTE--EVKRDFPDAEV----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence 58999999999997 67777654 15666533333322 234444 4443 578999998 7899999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+..+.++..+.+. .|..|++
T Consensus 75 ~~~H~~~~~~al~---aGkhVl~ 94 (358)
T 3gdo_A 75 SGLHYEHTMACIQ---AGKHVVM 94 (358)
T ss_dssp TTTHHHHHHHHHH---TTCEEEE
T ss_pred cHHHHHHHHHHHH---cCCeEEE
Confidence 9888776665443 4555543
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00025 Score=66.00 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=58.1
Q ss_pred ccCCC-cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEE
Q 023490 107 AFNGI-NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 107 ~l~G~-ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G--~~~~~~t~~~~~E~l~~ADVVi 183 (281)
.++|- |||.|||.|.+|+.+++.|.+ .++|.++++... ..+.+.+.. +..+.....++.++++++|+|+
T Consensus 11 ~~~g~~mkilvlGaG~vG~~~~~~L~~-------~~~v~~~~~~~~-~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi 82 (365)
T 3abi_A 11 HIEGRHMKVLILGAGNIGRAIAWDLKD-------EFDVYIGDVNNE-NLEKVKEFATPLKVDASNFDKLVEVMKEFELVI 82 (365)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHH-HHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccCCccEEEEECCCHHHHHHHHHHhc-------CCCeEEEEcCHH-HHHHHhccCCcEEEecCCHHHHHHHHhCCCEEE
Confidence 34442 589999999999999999865 468888877632 233332221 1110001123567899999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.++|+.....+.+..+ +.|..+++.++
T Consensus 83 ~~~p~~~~~~v~~~~~---~~g~~yvD~s~ 109 (365)
T 3abi_A 83 GALPGFLGFKSIKAAI---KSKVDMVDVSF 109 (365)
T ss_dssp ECCCGGGHHHHHHHHH---HHTCEEEECCC
T ss_pred EecCCcccchHHHHHH---hcCcceEeeec
Confidence 9999986666665432 23445555443
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00043 Score=64.20 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=61.2
Q ss_pred cEEEEEccCchHHHHHHHHHh-hhhhccCCcEEEE-EecCCcc-cHHHHHHCCceecCCCcCCHHhhc-----CcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKV-GLRKGSR-SFAEARAAGFTEENGTLGDIYETI-----SGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra-~~~~~~~G~~Vii-g~r~~~~-s~~~A~~~G~~~~~~t~~~~~E~l-----~~ADVVi 183 (281)
.+|||||+|.+|..+++.+.. . .+.+++. .++..++ ..+.+++.|.... ..+.++++ .+.|+|+
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~-----~~~elvav~d~~~~~~~~~~a~~~g~~~~---~~~~e~ll~~~~~~~iDvV~ 76 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNA-----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVF 76 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC-----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhC-----cCeEEEEEEeCChhhhHHHHHHHcCCCcc---cCCHHHHHhccCCCCCcEEE
Confidence 589999999999999999955 3 1566543 4444333 3456677777421 23566765 4589999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+++|...+.++..+.+.. ++|..|++...
T Consensus 77 ~atp~~~h~~~a~~al~a-~~Gk~Vi~ekp 105 (312)
T 1nvm_B 77 DATSASAHVQNEALLRQA-KPGIRLIDLTP 105 (312)
T ss_dssp ECSCHHHHHHHHHHHHHH-CTTCEEEECST
T ss_pred ECCChHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence 999976666665554432 34777776443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00017 Score=66.05 Aligned_cols=77 Identities=19% Similarity=0.089 Sum_probs=56.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcCcC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGS 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G-----~~~~~~t~~~~~E~l~~A 179 (281)
.+++| +++.|+|.|-+|++++..|.+. |. +|.+.+|..++..+.+.+.+ +........++++.++++
T Consensus 123 ~~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~ 195 (283)
T 3jyo_A 123 PNAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAA 195 (283)
T ss_dssp TTCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHS
T ss_pred cCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcC
Confidence 46889 9999999999999999999998 98 79899887554444443322 111000123677889999
Q ss_pred CEEEEccCCh
Q 023490 180 DLVLLLISDA 189 (281)
Q Consensus 180 DVViLavP~~ 189 (281)
|+||-+||..
T Consensus 196 DiVInaTp~G 205 (283)
T 3jyo_A 196 DGVVNATPMG 205 (283)
T ss_dssp SEEEECSSTT
T ss_pred CEEEECCCCC
Confidence 9999999963
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00067 Score=62.65 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=57.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCc---ccHHHHHHC--CceecCCCcCCHHhhcCcCCEEE
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~---~s~~~A~~~--G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
++||+|||.|.||..+|..+... |+ +|.+.+.... ...+...-. .+.. ..+. +.+++||+|+
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi 82 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVI 82 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEE
Confidence 48999999999999999999887 77 8888876542 111222111 1221 2466 7799999999
Q ss_pred EccCCh-----------hH----HHHHHHHHhcCCCCcEEEEeCC
Q 023490 184 LLISDA-----------AQ----ADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 184 LavP~~-----------~~----~~vl~ei~~~mKpgaILi~aaG 213 (281)
++.-.. .. .++++++.++. |+++|+++.-
T Consensus 83 ~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sN 126 (303)
T 2i6t_A 83 FTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQ 126 (303)
T ss_dssp ECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSS
T ss_pred EcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCC
Confidence 997221 11 12334444444 8888766543
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00029 Score=64.96 Aligned_cols=84 Identities=8% Similarity=0.154 Sum_probs=56.1
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HC-CceecCCCcCCHHhhcCc--CCEEEEcc
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AA-GFTEENGTLGDIYETISG--SDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~-G~~~~~~t~~~~~E~l~~--ADVViLav 186 (281)
.+|||||+|.||.. .+..++.. .+++|+...+.+.. .++ +. +.. .+.+.+|++++ .|+|++++
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~---~~~~~~~~~~----~~~~~~~ll~~~~vD~V~i~t 75 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDAS---KVHADWPAIP----VVSDPQMLFNDPSIDLIVIPT 75 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHH---HHHTTCSSCC----EESCHHHHHHCSSCCEEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHH---HHHhhCCCCc----eECCHHHHhcCCCCCEEEEeC
Confidence 58999999999997 77777764 15666533333222 222 22 332 25789999876 99999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
|+..+.++..+.+. .|..|++
T Consensus 76 p~~~H~~~~~~al~---aGkhV~~ 96 (352)
T 3kux_A 76 PNDTHFPLAQSALA---AGKHVVV 96 (352)
T ss_dssp CTTTHHHHHHHHHH---TTCEEEE
T ss_pred ChHHHHHHHHHHHH---CCCcEEE
Confidence 99888776665443 4554443
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00022 Score=69.44 Aligned_cols=84 Identities=7% Similarity=0.106 Sum_probs=58.6
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEE
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViL 184 (281)
.+|||||+ |.||...++.|+.. ..+++|+ ++++..++..+.+++.|+.. ...+.+.+|+++ +.|+|++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999998763 1166665 45554333344566667630 001568999985 6999999
Q ss_pred ccCChhHHHHHHHHHh
Q 023490 185 LISDAAQADNYEKIFS 200 (281)
Q Consensus 185 avP~~~~~~vl~ei~~ 200 (281)
++|+..+.++..+.+.
T Consensus 115 ~tp~~~H~~~~~~al~ 130 (479)
T 2nvw_A 115 SVKVPEHYEVVKNILE 130 (479)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHH
Confidence 9999888776654443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0011 Score=60.95 Aligned_cols=68 Identities=15% Similarity=0.147 Sum_probs=45.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH--HCC-------ceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~--~~G-------~~~~~~t~~~~~E~l~~ADV 181 (281)
++|+|||.|.||.+++..+... |+ +|.+.+....+....+. ..+ .... ...+. +.+++||+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~ 73 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT--GTNNY-ADTANSDV 73 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE--EESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEE--ECCCH-HHHCCCCE
Confidence 6899999999999999999887 76 87666655432211111 111 1110 01455 78999999
Q ss_pred EEEccCC
Q 023490 182 VLLLISD 188 (281)
Q Consensus 182 ViLavP~ 188 (281)
||+++..
T Consensus 74 Vi~a~g~ 80 (309)
T 1ur5_A 74 IVVTSGA 80 (309)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999743
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0002 Score=68.54 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=57.8
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEE
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViL 184 (281)
.+|||||+ |.||...++.|++. ..+++|+ ++++..++..+.+++.|+.. ...+.+.+|+++ +.|+|++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i 95 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI 95 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999999864 1166664 45544333334556667530 001568999986 6999999
Q ss_pred ccCChhHHHHHHHHH
Q 023490 185 LISDAAQADNYEKIF 199 (281)
Q Consensus 185 avP~~~~~~vl~ei~ 199 (281)
++|+..+.++..+.+
T Consensus 96 ~tp~~~H~~~~~~al 110 (438)
T 3btv_A 96 AIQVASHYEVVMPLL 110 (438)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHH
Confidence 999988877665433
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00027 Score=65.74 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=62.7
Q ss_pred cEEEEEc-cCchHHH-HH----HHHHhhhhhccCC-cE----------EEEEecCCcccHHHHHHCCceecCCCcCCHHh
Q 023490 112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (281)
Q Consensus 112 ktIGIIG-~G~mG~A-iA----~~Lra~~~~~~~G-~~----------Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E 174 (281)
.+||||| +|.||.. .+ +.+++. + .. +.++++..++..+.+++.|+.. .+.+.+|
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~ 77 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA 77 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence 4799999 9999998 77 777765 3 22 1367776665566677888741 1579999
Q ss_pred hcCc--CCEEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 175 ~l~~--ADVViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
++++ .|+|++++|+..+.++..+.+ +.|..|++
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~al---~~Gk~V~~ 112 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQAI---NAGKHVYC 112 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHHH---TTTCEEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHHH---HCCCeEEE
Confidence 9865 899999999988777666543 44665554
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00027 Score=65.52 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=57.4
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHC-CceecCCCcCCHHhhcCc--CCEEEEcc
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~--ADVViLav 186 (281)
.+|||||+|.||.. .+..++.. .+++|+ ++++..++ .+.+. +... +.+.+|++++ .|+|++++
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~---~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~t 73 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL---SKERYPQASI----VRSFKELTEDPEIDLIVVNT 73 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG---GGTTCTTSEE----ESCSHHHHTCTTCCEEEECS
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH---HHHhCCCCce----ECCHHHHhcCCCCCEEEEeC
Confidence 58999999999997 67777664 156665 44444332 23344 3432 5789999987 99999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi 209 (281)
|+..+.++..+.+. .|..|+
T Consensus 74 p~~~H~~~~~~al~---aGkhVl 93 (362)
T 3fhl_A 74 PDNTHYEYAGMALE---AGKNVV 93 (362)
T ss_dssp CGGGHHHHHHHHHH---TTCEEE
T ss_pred ChHHHHHHHHHHHH---CCCeEE
Confidence 99888777665443 355444
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00015 Score=68.73 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=54.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
.+|+|||.| +|+..++.+++. ..+++++ ++++..++..+.|++.|+.. +.+.+|++++.|+|++++|...
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~----~~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQP----PEGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSC----CTTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred CEEEEEehH-HHHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence 689999999 798877777654 1146654 56666666677788999875 7799999999999999999866
Q ss_pred H
Q 023490 191 Q 191 (281)
Q Consensus 191 ~ 191 (281)
+
T Consensus 79 h 79 (372)
T 4gmf_A 79 A 79 (372)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=67.28 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=60.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.|-+|++++..|.+. |. +|.+++|..++..+.+.+..... +.++++ + ++|+||.
T Consensus 118 ~~~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivIn 184 (282)
T 3fbt_A 118 VEIKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIIN 184 (282)
T ss_dssp CCCTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEE
T ss_pred CCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEE
Confidence 35789 9999999999999999999998 98 89999987544333332222121 223444 5 8999999
Q ss_pred ccCChhHH--H--HHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQA--D--NYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~--~--vl~ei~~~mKpgaILi~a 211 (281)
+||..-.. + .+. ...++++.+++|+
T Consensus 185 aTp~Gm~~~~~~~pi~--~~~l~~~~~v~Dl 213 (282)
T 3fbt_A 185 CTPKGMYPKEGESPVD--KEVVAKFSSAVDL 213 (282)
T ss_dssp CSSTTSTTSTTCCSSC--HHHHTTCSEEEES
T ss_pred CCccCccCCCccCCCC--HHHcCCCCEEEEE
Confidence 99873211 0 122 1224567777654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00082 Score=62.18 Aligned_cols=122 Identities=13% Similarity=0.115 Sum_probs=67.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH--CC------ceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~--~G------~~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|.+|.+++..|... |+ +|.+.+....+....+.+ .+ ... ..+..+.+++||+
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i----~~~~~~a~~~aDv 77 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL----YAGDYSDVKDCDV 77 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEE----C--CGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEE----EECCHHHhCCCCE
Confidence 6899999999999999999887 76 787777654322222222 11 111 1123677999999
Q ss_pred EEEccCChhH----------------HHHHHHHHhcCCCCcEEEEeCCc-c--hhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 182 VLLLISDAAQ----------------ADNYEKIFSCMKPNSILGLSHGF-L--LGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 182 ViLavP~~~~----------------~~vl~ei~~~mKpgaILi~aaG~-~--l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
|+++.+.... .++.+++.++ .|+++|++..-. . ...+.+.. .+|+ .+||....+.+-.
T Consensus 78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv~~~~~~~~k~s-~~p~-~rviG~gt~Ld~~ 154 (318)
T 1y6j_A 78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSNPVDIITYMIQKWS-GLPV-GKVIGSGTVLDSI 154 (318)
T ss_dssp EEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSSSHHHHHHHHHHHH-TCCT-TTEEECTTHHHHH
T ss_pred EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecCcHHHHHHHHHHHc-CCCH-HHEeccCCchHHH
Confidence 9998875321 1122234444 688887765321 1 11222211 2444 3788774444433
Q ss_pred hhHH
Q 023490 243 SVRR 246 (281)
Q Consensus 243 ~vr~ 246 (281)
..|+
T Consensus 155 r~~~ 158 (318)
T 1y6j_A 155 RFRY 158 (318)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0012 Score=60.70 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=46.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHH-----H--CC--ceecCCCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR-----A--AG--FTEENGTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~-----~--~G--~~~~~~t~~~~~E~l~~AD 180 (281)
|+|+|||.|.+|.++|..|... |+ +|.++++..++....+. . .+ .... ...+ .+++++||
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV--GGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE--EESC-GGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEE--EeCC-HHHhCCCC
Confidence 6899999999999999999888 77 88888776432211111 1 11 1110 0235 78999999
Q ss_pred EEEEccC
Q 023490 181 LVLLLIS 187 (281)
Q Consensus 181 VViLavP 187 (281)
+|+++..
T Consensus 72 iVViaag 78 (294)
T 1oju_A 72 IIVVTAG 78 (294)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999874
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=63.86 Aligned_cols=80 Identities=13% Similarity=0.287 Sum_probs=49.8
Q ss_pred cEEEEEccCchHHHHHHH--HHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~--Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++++|||+|++|.++++. .... |++++...+.+..... ..-.|+... ...++++++++.|+|++++|..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g-~~i~gv~V~--~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIG-TEVGGVPVY--NLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTT-CEETTEEEE--EGGGHHHHCSSCCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHH-hHhcCCeee--chhhHHHHHHhCCEEEEecCch
Confidence 689999999999999994 3333 7776654444332111 111233321 1457889987779999999997
Q ss_pred hHHHHHHHHHh
Q 023490 190 AQADNYEKIFS 200 (281)
Q Consensus 190 ~~~~vl~ei~~ 200 (281)
...++.+.+..
T Consensus 157 ~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 AAQSITDRLVA 167 (215)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 77677776544
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0012 Score=61.35 Aligned_cols=68 Identities=19% Similarity=0.156 Sum_probs=47.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC---------CceecCCCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~---------G~~~~~~t~~~~~E~l~~AD 180 (281)
|+|+|||.|.||.++|..|... |+ +|.+.+....+....+.+. ..... ..+..+.+++||
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~---~~~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVT---GTNDYGPTEDSD 71 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEE---EESSSGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEE---ECCCHHHhCCCC
Confidence 6899999999999999999888 76 7888877654322111110 11110 124568899999
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+|+++.+.
T Consensus 72 vVii~ag~ 79 (314)
T 3nep_X 72 VCIITAGL 79 (314)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998754
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00062 Score=62.99 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=59.7
Q ss_pred cccCCCcEEEEEccCch-HHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~m-G~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.|+| |..+|+.|... |.|..|.++.+. ..++.+.+++||+||.
T Consensus 154 i~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (281)
T 2c2x_A 154 ISIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVA 209 (281)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEE
Confidence 47999 99999999986 99999998765 113678777543 1378899999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-.. ++. ..++|+|++|++.+
T Consensus 210 Avg~p~---~I~--~~~vk~GavVIDVg 232 (281)
T 2c2x_A 210 AVGVAH---LLT--ADMVRPGAAVIDVG 232 (281)
T ss_dssp CSCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCc---ccC--HHHcCCCcEEEEcc
Confidence 998543 233 13479999998765
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00029 Score=63.94 Aligned_cols=83 Identities=11% Similarity=0.158 Sum_probs=55.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|||||+|.||...++.+.... ...+.+++ ++++.. .+.+.|+. ..+.+|+++ +.|+|++++|+
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~--~~~~~~lvav~d~~~-----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~ 75 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRE-----LGSLDEVR-----QISLEDALRSQEIDVAYICSES 75 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH--HHTTEEEEEEECSSC-----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCG
T ss_pred ceEEEEEEcHHHHHHHHHHhccc--cCCCEEEEEEECchH-----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCc
Confidence 68999999999999999886520 01145554 344432 12234554 358999986 78999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi 209 (281)
..+.++..+.+. .|..|+
T Consensus 76 ~~H~~~~~~al~---aGkhVl 93 (294)
T 1lc0_A 76 SSHEDYIRQFLQ---AGKHVL 93 (294)
T ss_dssp GGHHHHHHHHHH---TTCEEE
T ss_pred HhHHHHHHHHHH---CCCcEE
Confidence 888776665443 455444
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0012 Score=61.76 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=58.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEE-ecCCcccHHHHHHCCceec------------CCC--cCCHHhh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEE------------NGT--LGDIYET 175 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig-~r~~~~s~~~A~~~G~~~~------------~~t--~~~~~E~ 175 (281)
|.+|||+|+|.||+.+++.|... .++++... ++........+.+.|+... .+. ..+.+++
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~ 75 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence 46899999999999999998763 15666443 3332222233333321100 000 1256677
Q ss_pred cCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+.++|+|+.++|.....+...+.+. .|..+++.++
T Consensus 76 ~~~vDvV~~atp~~~~~~~a~~~l~---aG~~VId~sp 110 (337)
T 1cf2_P 76 LDEADIVIDCTPEGIGAKNLKMYKE---KGIKAIFQGG 110 (337)
T ss_dssp HHTCSEEEECCSTTHHHHHHHHHHH---HTCCEEECTT
T ss_pred hcCCCEEEECCCchhhHHHHHHHHH---cCCEEEEecC
Confidence 7899999999999877666654443 3555666554
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=60.52 Aligned_cols=115 Identities=12% Similarity=0.152 Sum_probs=70.4
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC-cccH--HHHH----HCCceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF--AEAR----AAGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~-~~s~--~~A~----~~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
++|+|+| +|.||+.+++.+... .+++++...++. +... +... ..|+.. ..+++++++++|+||
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVVI 78 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYLI 78 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEEE
Confidence 7999999 999999999998765 167765543332 1100 0000 113432 468999999999999
Q ss_pred EccCChhHHHHHHHHHhcCCCCc-EEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 184 LLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
-++++....+++...+.+ |. +|+-..|+.-.+++..... -+... +...||..
T Consensus 79 DfT~p~a~~~~~~~al~~---G~~vVigTTG~s~~~~~~L~~a-a~~~~-vv~a~N~s 131 (272)
T 4f3y_A 79 DFTLPEGTLVHLDAALRH---DVKLVIGTTGFSEPQKAQLRAA-GEKIA-LVFSANMS 131 (272)
T ss_dssp ECSCHHHHHHHHHHHHHH---TCEEEECCCCCCHHHHHHHHHH-TTTSE-EEECSCCC
T ss_pred EcCCHHHHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHH-hccCC-EEEECCCC
Confidence 999988776666654443 33 4444677765433221112 23445 46677764
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00038 Score=63.81 Aligned_cols=86 Identities=9% Similarity=0.022 Sum_probs=56.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEE-EecCC-cccHH---HHHHCCceecCCCcCCHHhhcCc--CCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG-SRSFA---EARAAGFTEENGTLGDIYETISG--SDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vii-g~r~~-~~s~~---~A~~~G~~~~~~t~~~~~E~l~~--ADVViL 184 (281)
.+|||||+|.+|+..++.+ .. +.+|+. +++.. .+..+ .+.+.|+.. ..+.+.+|++++ .|+|++
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I 73 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI 73 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence 6899999999999777776 43 677654 44433 12222 223346521 126799999875 899999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi 209 (281)
++|+..+.++..+.+. .|..|.
T Consensus 74 ~tp~~~H~~~~~~al~---aGkhVl 95 (337)
T 3ip3_A 74 NTVFSLNGKILLEALE---RKIHAF 95 (337)
T ss_dssp CSSHHHHHHHHHHHHH---TTCEEE
T ss_pred eCCcchHHHHHHHHHH---CCCcEE
Confidence 9999888776665443 344444
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0013 Score=61.46 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=47.6
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH----H-----CCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----A-----AGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~----~-----~G~~~~~~t~~~~~E~l 176 (281)
.++. ++|+|||.|.+|.++|..|... |+ +|.+++....+....+. . ...... ...+. +.+
T Consensus 4 ~m~~-~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~--~t~d~-~a~ 73 (324)
T 3gvi_A 4 SMAR-NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT--GANDY-AAI 73 (324)
T ss_dssp --CC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESSG-GGG
T ss_pred CCcC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE--EeCCH-HHH
Confidence 3455 8999999999999999999888 77 88888876543211111 1 111110 01344 889
Q ss_pred CcCCEEEEccC
Q 023490 177 SGSDLVLLLIS 187 (281)
Q Consensus 177 ~~ADVViLavP 187 (281)
++||+|+++..
T Consensus 74 ~~aDiVIiaag 84 (324)
T 3gvi_A 74 EGADVVIVTAG 84 (324)
T ss_dssp TTCSEEEECCS
T ss_pred CCCCEEEEccC
Confidence 99999999864
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0019 Score=60.52 Aligned_cols=94 Identities=16% Similarity=0.122 Sum_probs=58.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEE-ecCCcccHHHHHHCCceecCC-------------CcCCHHhhcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENG-------------TLGDIYETIS 177 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig-~r~~~~s~~~A~~~G~~~~~~-------------t~~~~~E~l~ 177 (281)
.+|||+|+|.||+.+++.|... .+++++.. ++........+.+.|+....+ ...+.+++++
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK 76 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred eEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc
Confidence 5899999999999999998765 14666543 333333334455555432100 0113445566
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|+|+.++|.....+.....+ +.|+.+++.++
T Consensus 77 ~vDvV~~aTp~~~s~~~a~~~~---~aG~kvV~~sa 109 (340)
T 1b7g_O 77 TSDIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGG 109 (340)
T ss_dssp HCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred CCCEEEECCCCchhHHHHHHHH---HcCCeEEEeCC
Confidence 8999999999987666655443 34665555433
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0011 Score=61.19 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=56.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH--C-------CceecCCCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--A-------GFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~--~-------G~~~~~~t~~~~~E~l~~AD 180 (281)
++|+|||.|++|.+++..|... |. +|.+++....+....+.. . .... ..+..+.+++||
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v----~~~~~~a~~~aD 76 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRV----KAGEYSDCHDAD 76 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEE----EECCGGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEE----EeCCHHHhCCCC
Confidence 7999999999999999998877 64 676666542211111111 1 1111 114467899999
Q ss_pred EEEEccCChhH------------HHHHH----HHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQ------------ADNYE----KIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~------------~~vl~----ei~~~mKpgaILi~aa 212 (281)
+|+++.+.... ..++. ++.++ .|+++|++.+
T Consensus 77 vVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (317)
T 3d0o_A 77 LVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT 123 (317)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 99998864211 12332 33333 7888877654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0025 Score=59.33 Aligned_cols=67 Identities=18% Similarity=0.151 Sum_probs=46.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHH--HC-------CceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AA-------GFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~--~~-------G~~~~~~t~~~~~E~l~~ADV 181 (281)
++|+|||.|.||.++|..|... |+ +|.+.+....+....+. +. ..... ..+..+.+++||+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~---~t~d~~a~~~aDv 76 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR---GTNDYKDLENSDV 76 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE---EESCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEE---EcCCHHHHCCCCE
Confidence 8999999999999999999887 66 88888776543221121 11 11110 1123578999999
Q ss_pred EEEccC
Q 023490 182 VLLLIS 187 (281)
Q Consensus 182 ViLavP 187 (281)
|+++..
T Consensus 77 VIi~ag 82 (321)
T 3p7m_A 77 VIVTAG 82 (321)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 999864
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.002 Score=59.39 Aligned_cols=68 Identities=24% Similarity=0.205 Sum_probs=45.2
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC---------CceecCCCcCCHHhhcCcCCEE
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~---------G~~~~~~t~~~~~E~l~~ADVV 182 (281)
||+|||.|.||.+++..+... ++ +|.+.+....+....+.+. ..... ...+. +.+++||+|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence 689999999999999998877 66 6777776643222212111 21110 01354 789999999
Q ss_pred EEccCCh
Q 023490 183 LLLISDA 189 (281)
Q Consensus 183 iLavP~~ 189 (281)
+++.+..
T Consensus 72 i~~ag~~ 78 (308)
T 2d4a_B 72 LVTAGIG 78 (308)
T ss_dssp EECCSCC
T ss_pred EEeCCCC
Confidence 9996543
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00095 Score=61.47 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=57.1
Q ss_pred cEEEEEccCchHH-HHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccC
Q 023490 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~-AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~---ADVViLavP 187 (281)
.+|||||+|.||. ..++.+++. .+.+|+...+.+.+ +.|+.. +.+.+|++++ .|+|++++|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence 5899999999998 788888875 15665533333222 246653 6789999865 999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEE
Q 023490 188 DAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+..+.++..+.+. .|..|++
T Consensus 91 ~~~H~~~~~~al~---aGkhVl~ 110 (330)
T 4ew6_A 91 PQYRYEAAYKALV---AGKHVFL 110 (330)
T ss_dssp HHHHHHHHHHHHH---TTCEEEE
T ss_pred cHHHHHHHHHHHH---cCCcEEE
Confidence 8887776665443 4565544
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00087 Score=62.49 Aligned_cols=77 Identities=12% Similarity=0.079 Sum_probs=53.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC---CcccHHHHHH----CCceecCCCcCC---HHh
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARA----AGFTEENGTLGD---IYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~---~~~s~~~A~~----~G~~~~~~t~~~---~~E 174 (281)
.+++| +++.|+|.|-+|++++..|.+. |. +|.+.+|. .++..+.+.+ .+...+...+.+ +.+
T Consensus 150 ~~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~ 222 (315)
T 3tnl_A 150 HDIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK 222 (315)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh
Confidence 46889 9999999999999999999998 98 89999987 3333333322 121110001222 446
Q ss_pred hcCcCCEEEEccCCh
Q 023490 175 TISGSDLVLLLISDA 189 (281)
Q Consensus 175 ~l~~ADVViLavP~~ 189 (281)
.++++|+||-+||..
T Consensus 223 ~l~~aDiIINaTp~G 237 (315)
T 3tnl_A 223 EIAESVIFTNATGVG 237 (315)
T ss_dssp HHHTCSEEEECSSTT
T ss_pred hhcCCCEEEECccCC
Confidence 678999999999964
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0018 Score=60.52 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=45.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHH--HHCCceec--C-CCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA--RAAGFTEE--N-GTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A--~~~G~~~~--~-~t~~~~~E~l~~ADVViL 184 (281)
++|+|||.|.||.++|..|... |+ +|.+.+....+....+ .+.+.... + ....+..+.+++||+|++
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi 79 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ------GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCI 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEE
Confidence 8999999999999999999988 76 7777776432221111 11121100 0 001233578999999999
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
+..
T Consensus 80 ~ag 82 (326)
T 3pqe_A 80 CAG 82 (326)
T ss_dssp CCS
T ss_pred ecc
Confidence 874
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.001 Score=61.63 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=56.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH--CC------ceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~--~G------~~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|.+|.+++..|... +. ++.+++....+....+.+ .. +.. ..+..+.+++||+
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v----~~~~~~a~~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI----YSGEYSDCKDADL 75 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 6999999999999999999887 65 777777643222212221 11 111 1244678999999
Q ss_pred EEEccCChhHH------------HHHHHHHh---cCCCCcEEEEeC
Q 023490 182 VLLLISDAAQA------------DNYEKIFS---CMKPNSILGLSH 212 (281)
Q Consensus 182 ViLavP~~~~~------------~vl~ei~~---~mKpgaILi~aa 212 (281)
|+++.+..... .++.++.+ ...|+++|++..
T Consensus 76 Vii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp EEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 99998653221 23332222 236888877653
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00068 Score=61.62 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
.+ +++.|||.|-+|++++..|.+. |. +|.+++|..++..+.+.+.+.... .+. + +.++|+||.+||
T Consensus 118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~~----~~~-~-~~~~DivInaTp 184 (271)
T 1npy_A 118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAYI----NSL-E-NQQADILVNVTS 184 (271)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEEE----SCC-T-TCCCSEEEECSS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCccc----hhh-h-cccCCEEEECCC
Confidence 57 8999999999999999999998 87 799999986555555666554321 122 2 578999999999
Q ss_pred Chh
Q 023490 188 DAA 190 (281)
Q Consensus 188 ~~~ 190 (281)
...
T Consensus 185 ~gm 187 (271)
T 1npy_A 185 IGM 187 (271)
T ss_dssp TTC
T ss_pred CCc
Confidence 754
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0016 Score=61.20 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHH--HCC--ceecC--CCcCCHHhhcCcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEEN--GTLGDIYETISGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~--~~G--~~~~~--~t~~~~~E~l~~AD 180 (281)
.. ++|+|||.|.||.++|..+... |+ +|.+.+....+....+. +.+ +.... ....+.++ +++||
T Consensus 20 ~~-~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daD 91 (330)
T 3ldh_A 20 SY-NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSK 91 (330)
T ss_dssp CC-CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCC
Confidence 45 9999999999999999999988 76 77777764322111111 111 10000 00235544 99999
Q ss_pred EEEEccCCh------------hHHHH----HHHHHhcCCCCcEEEEeCC
Q 023490 181 LVLLLISDA------------AQADN----YEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 181 VViLavP~~------------~~~~v----l~ei~~~mKpgaILi~aaG 213 (281)
+||++.... ....+ .+++.++ .|++++++..-
T Consensus 92 iVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtN 139 (330)
T 3ldh_A 92 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPE 139 (330)
T ss_dssp EEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSS
T ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCC
Confidence 999975321 11122 3345455 78888776654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00086 Score=63.79 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=54.9
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCC---cEEEEEecCCcccHHHHHHCC------ceecCCCc---CCHHhhcCc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAG------FTEENGTL---GDIYETISG 178 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G---~~Viig~r~~~~s~~~A~~~G------~~~~~~t~---~~~~E~l~~ 178 (281)
|++|+|||.|.+|+.+++.|.+. | .+|.+.+|..++..+.+.+.+ +....... .++++++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 58999999999999999999887 6 378888887544333333321 21100001 235677777
Q ss_pred --CCEEEEccCChhHHHHHHHH
Q 023490 179 --SDLVLLLISDAAQADNYEKI 198 (281)
Q Consensus 179 --ADVViLavP~~~~~~vl~ei 198 (281)
.|+|+.++|+.....+++..
T Consensus 75 ~~~DvVin~ag~~~~~~v~~a~ 96 (405)
T 4ina_A 75 VKPQIVLNIALPYQDLTIMEAC 96 (405)
T ss_dssp HCCSEEEECSCGGGHHHHHHHH
T ss_pred hCCCEEEECCCcccChHHHHHH
Confidence 89999999987665565543
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00088 Score=62.37 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=54.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC---CcccHHHHHHC----CceecCCCcCCH---Hh
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGDI---YE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~---~~~s~~~A~~~----G~~~~~~t~~~~---~E 174 (281)
.+++| +++.|+|.|-+|++++..|.+. |. +|.+.+|. .++..+.+.+. +.........+. .+
T Consensus 144 ~~l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~ 216 (312)
T 3t4e_A 144 FDMRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE 216 (312)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh
Confidence 45789 9999999999999999999998 98 89999988 33333333322 211100012343 56
Q ss_pred hcCcCCEEEEccCCh
Q 023490 175 TISGSDLVLLLISDA 189 (281)
Q Consensus 175 ~l~~ADVViLavP~~ 189 (281)
.++++|+||-+||..
T Consensus 217 ~l~~~DiIINaTp~G 231 (312)
T 3t4e_A 217 ALASADILTNGTKVG 231 (312)
T ss_dssp HHHHCSEEEECSSTT
T ss_pred hccCceEEEECCcCC
Confidence 688999999999974
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0021 Score=59.88 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=46.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH--CC------ceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~--~G------~~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|.+|.+++..|... ++ ++.+++....+....+.+ .. +.. ..+..+.+++||+
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i----~~~~~~a~~~aDv 79 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI----YSAEYSDAKDADL 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGGGCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 7999999999999999999877 65 677777643222222221 11 111 1245678999999
Q ss_pred EEEccCCh
Q 023490 182 VLLLISDA 189 (281)
Q Consensus 182 ViLavP~~ 189 (281)
|+++.+..
T Consensus 80 Vii~ag~~ 87 (326)
T 2zqz_A 80 VVITAGAP 87 (326)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99988653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0021 Score=61.90 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=68.3
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC----Cccc--------HHHHHHCCceecCCCcCCHH
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDIY 173 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~----~~~s--------~~~A~~~G~~~~~~t~~~~~ 173 (281)
.++. .+|.|+|.|.+|.++|+.|... |. +|++.+++ ..+. .+.+.+.... ....+++
T Consensus 189 ~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L~ 258 (388)
T 1vl6_A 189 KIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDLE 258 (388)
T ss_dssp CTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCHH
T ss_pred CCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhHH
Confidence 6888 9999999999999999999998 88 78899887 3221 2334432211 1245799
Q ss_pred hhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 174 E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
|+++++|++|=+.-+ .++. +....|+++.+|...+
T Consensus 259 eav~~ADVlIG~Sap----~l~t~emVk~Ma~~pIIfalS 294 (388)
T 1vl6_A 259 TALEGADFFIGVSRG----NILKPEWIKKMSRKPVIFALA 294 (388)
T ss_dssp HHHTTCSEEEECSCS----SCSCHHHHTTSCSSCEEEECC
T ss_pred HHHccCCEEEEeCCC----CccCHHHHHhcCCCCEEEEcC
Confidence 999999999988654 3444 6777799999876544
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0014 Score=63.50 Aligned_cols=79 Identities=20% Similarity=0.145 Sum_probs=51.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcC---CHHhhcCcCCEEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLL 184 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~---~~~E~l~~ADVViL 184 (281)
.+ ++|.|+|.|.||+++++.|.+. |.+|.+.+|..++..+.+.+.+ +........ ++.++++++|+|+.
T Consensus 2 ~~-k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn 74 (450)
T 1ff9_A 2 AT-KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVIS 74 (450)
T ss_dssp CC-CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence 35 8999999999999999999988 8998888876432222222222 210000122 34477889999999
Q ss_pred ccCChhHHHH
Q 023490 185 LISDAAQADN 194 (281)
Q Consensus 185 avP~~~~~~v 194 (281)
++|...+..+
T Consensus 75 ~a~~~~~~~i 84 (450)
T 1ff9_A 75 LIPYTFHATV 84 (450)
T ss_dssp CCC--CHHHH
T ss_pred CCccccchHH
Confidence 9998654443
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0014 Score=64.04 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=60.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVV 182 (281)
..+++ ++|.|||.|.+|+++++.|.+. .|++|.+.+|..++..+.+.+.++........ ++.++++++|+|
T Consensus 19 ~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvV 92 (467)
T 2axq_A 19 GRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVV 92 (467)
T ss_dssp ----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred cCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEE
Confidence 45778 9999999999999999999875 14688888887543333333223321000122 345678899999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|.++|......+.... ++++..+++..
T Consensus 93 In~tp~~~~~~v~~a~---l~~g~~vvd~~ 119 (467)
T 2axq_A 93 ISLIPYTFHPNVVKSA---IRTKTDVVTSS 119 (467)
T ss_dssp EECSCGGGHHHHHHHH---HHHTCEEEECS
T ss_pred EECCchhhhHHHHHHH---HhcCCEEEEee
Confidence 9999987554444332 23455555543
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0047 Score=58.10 Aligned_cols=92 Identities=21% Similarity=0.138 Sum_probs=58.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHH--------------------CCceecCCCcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA--------------------AGFTEENGTLG 170 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~--------------------~G~~~~~~t~~ 170 (281)
.+|||+|+|.||+.+++.|... .+++|+...+...... ..++. .++.. ..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~ 73 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG 73 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence 5899999999999999998764 1466543333211111 11122 22221 12
Q ss_pred CHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
+.++++.++|+|+.|+|.....+..+ ..+++.|+.++++++.
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence 34566679999999999866444443 4678889888877764
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0005 Score=62.15 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=62.2
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCc--------eecCCCcCCHHhhcCc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--------TEENGTLGDIYETISG 178 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~--------~~~~~t~~~~~E~l~~ 178 (281)
+++| +++.|+|.|.||.++|+.|.+. | +|++++|..++..+.+.+.+. ..+ ..+..+.+.+
T Consensus 125 ~l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d---~~~~~~~~~~ 193 (287)
T 1nvt_A 125 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK---FSGLDVDLDG 193 (287)
T ss_dssp CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE---EECTTCCCTT
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeEE---EeeHHHhhCC
Confidence 5789 9999999999999999999998 9 999988874433333322211 000 1233567889
Q ss_pred CCEEEEccCChhHHH----HHHHHHhcCCCCcEEEEeC
Q 023490 179 SDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 179 ADVViLavP~~~~~~----vl~ei~~~mKpgaILi~aa 212 (281)
+|+||.++|...... .+. -...++++.+++++.
T Consensus 194 ~DilVn~ag~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~ 230 (287)
T 1nvt_A 194 VDIIINATPIGMYPNIDVEPIV-KAEKLREDMVVMDLI 230 (287)
T ss_dssp CCEEEECSCTTCTTCCSSCCSS-CSTTCCSSSEEEECC
T ss_pred CCEEEECCCCCCCCCCCCCCCC-CHHHcCCCCEEEEee
Confidence 999999999754211 010 124567777777553
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=60.92 Aligned_cols=116 Identities=14% Similarity=0.017 Sum_probs=71.2
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-----H-HHH--HHCCceecCCCcCCHHhhcCcCCE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-----F-AEA--RAAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-----~-~~A--~~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
+.+|+|+| .|.||+.+++.+.+. .++++....+..... . +.+ ...|+.. ..++++++.++|+
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aDV 91 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTEG 91 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCSE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCCE
Confidence 46899999 999999999998764 167765554432110 0 000 0234443 5689999999999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
||-.++|....+.+...+.+ |. +|+-..|+.-.+++..... -+.+.+ ...||..
T Consensus 92 vIDFT~p~a~~~~~~~~l~~---Gv~vViGTTG~~~e~~~~L~~a-a~~~~~-~~a~N~S 146 (288)
T 3ijp_A 92 ILDFSQPQASVLYANYAAQK---SLIHIIGTTGFSKTEEAQIADF-AKYTTI-VKSGNMS 146 (288)
T ss_dssp EEECSCHHHHHHHHHHHHHH---TCEEEECCCCCCHHHHHHHHHH-HTTSEE-EECSCCC
T ss_pred EEEcCCHHHHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHH-hCcCCE-EEECCCc
Confidence 99999887766666654443 44 4444678764332210001 223454 6778764
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0046 Score=55.05 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=61.1
Q ss_pred ccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcC
Q 023490 101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 101 f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-A~~~G~~~~~~t~~~~~E~l~~A 179 (281)
|++. .+|+| +++.|||.|.+|..-++.|.+. |.+|++..+......+. +.+.++....+.+ .++.+.++
T Consensus 23 ~Pif-l~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~--~~~dL~~a 92 (223)
T 3dfz_A 23 YTVM-LDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRKKV--GEEDLLNV 92 (223)
T ss_dssp CEEE-ECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECSCC--CGGGSSSC
T ss_pred cccE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEECCC--CHhHhCCC
Confidence 4433 68999 9999999999999999999999 99988887654333332 3333343321222 23558899
Q ss_pred CEEEEccCChhHHHHHHHH
Q 023490 180 DLVLLLISDAAQADNYEKI 198 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei 198 (281)
|+||.++.+......+.+.
T Consensus 93 dLVIaAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 93 FFIVVATNDQAVNKFVKQH 111 (223)
T ss_dssp SEEEECCCCTHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHH
Confidence 9999998887665544443
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0017 Score=59.85 Aligned_cols=67 Identities=21% Similarity=0.143 Sum_probs=44.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHH--CC------ceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~--~G------~~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|.+|.+++..|... + -++.+.+....+....+.+ .. .... . +..+.+++||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~---~-~~~~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVW---A-GSYGDLEGARA 70 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEE---E-CCGGGGTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEE---E-CCHHHhCCCCE
Confidence 5899999999999999998876 5 3677777653222212222 11 1111 1 23678999999
Q ss_pred EEEccCC
Q 023490 182 VLLLISD 188 (281)
Q Consensus 182 ViLavP~ 188 (281)
|+++.+.
T Consensus 71 Vii~ag~ 77 (310)
T 2xxj_A 71 VVLAAGV 77 (310)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998764
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0026 Score=59.15 Aligned_cols=66 Identities=20% Similarity=0.144 Sum_probs=44.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC--cccHHHHHH---------CCceecCCCcCCHHhhcCcC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--SRSFAEARA---------AGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~--~~s~~~A~~---------~G~~~~~~t~~~~~E~l~~A 179 (281)
++|+|||.|.||.++|..+... |+ +|.++++.. ......+.+ ...... ..+..+.+++|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~---~t~d~~a~~~a 79 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANII---GTSDYADTADS 79 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEE---EESCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEE---EcCCHHHhCCC
Confidence 7999999999999999999988 88 888887762 111111110 011110 11235789999
Q ss_pred CEEEEcc
Q 023490 180 DLVLLLI 186 (281)
Q Consensus 180 DVViLav 186 (281)
|+||++.
T Consensus 80 DvVIiaa 86 (315)
T 3tl2_A 80 DVVVITA 86 (315)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999987
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0037 Score=53.32 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=52.7
Q ss_pred ccccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCc-eec-CCCcCCHHhhcCcCCE
Q 023490 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEE-NGTLGDIYETISGSDL 181 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~-~~~-~~t~~~~~E~l~~ADV 181 (281)
+..|.| |+|.|.|. |.+|.++++.|.+. |++|++..|...+ .+.....++ ..- .+...++.+.+.+.|+
T Consensus 16 ~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~ 87 (236)
T 3e8x_A 16 NLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEEQ-GPELRERGASDIVVANLEEDFSHAFASIDA 87 (236)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGGG-HHHHHHTTCSEEEECCTTSCCGGGGTTCSE
T ss_pred ccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChHH-HHHHHhCCCceEEEcccHHHHHHHHcCCCE
Confidence 467999 99999996 99999999999999 9999988887543 333333444 211 1111456788999999
Q ss_pred EEEccCC
Q 023490 182 VLLLISD 188 (281)
Q Consensus 182 ViLavP~ 188 (281)
|+.+...
T Consensus 88 vi~~ag~ 94 (236)
T 3e8x_A 88 VVFAAGS 94 (236)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998764
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0027 Score=56.60 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=58.0
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A~~~---- 160 (281)
...|++ ++|.|||.|.+|..+|+.|... |. ++.+.++.. .+....+++.
T Consensus 26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 456888 9999999999999999999998 87 777777653 2222222211
Q ss_pred -Cceec--CCCcC--CHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t~~--~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
++..+ ..... +.++.++++|+|+.+++..+....+.+..
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~ 142 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC 142 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHH
Confidence 22110 01111 24567889999999998766555666443
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0042 Score=58.03 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=57.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhh---hhhccCCcEEE-EEecCCccc----HH--HHHH--CCceecCCCcCCHHhhcC-
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVK-VGLRKGSRS----FA--EARA--AGFTEENGTLGDIYETIS- 177 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~---~~~~~~G~~Vi-ig~r~~~~s----~~--~A~~--~G~~~~~~t~~~~~E~l~- 177 (281)
|.+|||||+|.||+.+++.+... |...|.+++|+ +++++.... .. .+.. .+... +..+.+++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~---~~~d~~~ll~~ 78 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLR---DDAKAIEVVRS 78 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCS---BCCCHHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCcccc---CCCCHHHHhcC
Confidence 67999999999999999998763 11122366654 344432211 11 1111 11110 0128888885
Q ss_pred -cCCEEEEccCChhH-HHHHHHHHhcCCCCcEEEEe
Q 023490 178 -GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 178 -~ADVViLavP~~~~-~~vl~ei~~~mKpgaILi~a 211 (281)
+.|+|+.++|+..+ .+.++-....|+.|..|+..
T Consensus 79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 58999999998764 12233344556778877655
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0036 Score=57.11 Aligned_cols=91 Identities=11% Similarity=0.176 Sum_probs=62.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---Hhh-cCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~---~E~-l~~ADVViLavP 187 (281)
+++.|+|+|..|..+++.|.+. |+ |++.++.. +..+ ..+.|+..-.+...+. +++ ++++|.|+++++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~vid~~~-~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS------EV-FVLAEDEN-VRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS------CE-EEEESCGG-GHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------Cc-EEEEeCCh-hhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 6899999999999999999988 88 77766554 3344 5556654322333333 334 789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCc-EEEEe
Q 023490 188 DAAQADNYEKIFSCMKPNS-ILGLS 211 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpga-ILi~a 211 (281)
+.+..-..-.....+.|+. ++.-+
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar~ 211 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAEA 211 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEE
Confidence 8654444445666677764 44433
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0044 Score=60.57 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=56.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHC-C----------------------ceecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAA-G----------------------FTEENG 167 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~-G----------------------~~~~~~ 167 (281)
.+|||||+|.||+.+++.+... .+++|. ++++..++..+.+.+. | ..
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~---- 94 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIA---- 94 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEE----
T ss_pred eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCce----
Confidence 5899999999999999988754 256654 4455443333333333 4 11
Q ss_pred CcCCHHhhcC--cCCEEEEccCChh-HHHHHHHHHhcCCCCcEEEE
Q 023490 168 TLGDIYETIS--GSDLVLLLISDAA-QADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 168 t~~~~~E~l~--~ADVViLavP~~~-~~~vl~ei~~~mKpgaILi~ 210 (281)
.+.+.+++++ +.|+|++++|... +.++..+ .|+.|..|+.
T Consensus 95 v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv~ 137 (446)
T 3upl_A 95 VTDDNDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLVM 137 (446)
T ss_dssp EESCHHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEEE
T ss_pred EECCHHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEEe
Confidence 1468999987 5899999999753 3344333 3445666653
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0024 Score=62.33 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=46.4
Q ss_pred cEEEEEccCch--HHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC---------CceecCCCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~m--G~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~---------G~~~~~~t~~~~~E~l~~AD 180 (281)
+||+|||.|+| |.++++.+... ..-.| +|.+++...++ .+..... .+.. ..|.+|++++||
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~--~~~~g-eV~L~Di~~e~-le~~~~~~~~l~~~~~~I~~----TtD~~eAl~dAD 77 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSID--ERMSG-TVALYDLDFEA-AQKNEVIGNHSGNGRWRYEA----VSTLKKALSAAD 77 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHC--SSCCE-EEEEECSSHHH-HHHHHHHHTTSTTSCEEEEE----ESSHHHHHTTCS
T ss_pred CEEEEECCChhHhHHHHHHHHHhc--cccCC-eEEEEeCCHHH-HHHHHHHHHHHhccCCeEEE----ECCHHHHhcCCC
Confidence 79999999998 57888887752 00015 88888766322 2211111 1222 468899999999
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+||+++++
T Consensus 78 fVI~airv 85 (450)
T 3fef_A 78 IVIISILP 85 (450)
T ss_dssp EEEECCCS
T ss_pred EEEecccc
Confidence 99999975
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0025 Score=59.63 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=47.2
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHH--HCC------ceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG------FTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~--~~G------~~~~~~t~~~~~E~l 176 (281)
...+ ++|+|||.|.||.++|..|... |+ ++.+.+....+....+. +.. ... ..+..+.+
T Consensus 6 ~~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i----~~~~~~a~ 74 (326)
T 3vku_A 6 DKDH-QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI----YSAEYSDA 74 (326)
T ss_dssp -CCC-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGG
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEE----EECcHHHh
Confidence 3456 8999999999999999999988 76 77777764322221111 111 111 12446789
Q ss_pred CcCCEEEEccC
Q 023490 177 SGSDLVLLLIS 187 (281)
Q Consensus 177 ~~ADVViLavP 187 (281)
++||+|+++..
T Consensus 75 ~~aDiVvi~ag 85 (326)
T 3vku_A 75 KDADLVVITAG 85 (326)
T ss_dssp TTCSEEEECCC
T ss_pred cCCCEEEECCC
Confidence 99999999864
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0066 Score=56.79 Aligned_cols=93 Identities=15% Similarity=0.142 Sum_probs=56.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEec-C--CcccHHHHHHCCcee--------cCCCc--CCHHhhcC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K--GSRSFAEARAAGFTE--------ENGTL--GDIYETIS 177 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r-~--~~~s~~~A~~~G~~~--------~~~t~--~~~~E~l~ 177 (281)
++|+||| .|.+|+.+++.|... .+++|....+ . ..+... ...+... .+-.. .+.++.++
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKYK--DACYWFQDRDIPENIKDMVVIPTDPKHEEF 81 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHH--HHSCCCCSSCCCHHHHTCBCEESCTTSGGG
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccHH--HhcccccccccccCceeeEEEeCCHHHHhc
Confidence 5899999 899999999998765 1356654433 2 112221 1112100 00001 14455556
Q ss_pred -cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 178 -GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 178 -~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
++|+|++++|.....+....+. +.|..|++..|.
T Consensus 82 ~~~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 82 EDVDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp TTCCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCCCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 8999999999877666666544 357778877663
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0053 Score=56.60 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=45.3
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHHHC--Cc---eecCCC--cCCHHhhcCcCCE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAA--GF---TEENGT--LGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~~~--G~---~~~~~t--~~~~~E~l~~ADV 181 (281)
+||+|||. |.+|.+++..|... | .+|.+.+... ....+.+. .. ..+ .+ ..+.++++++||+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~-~~~~t~d~~~a~~~aDv 71 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVK-GYLGPEQLPDCLKGCDV 71 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEE-EEESGGGHHHHHTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEE-EecCCCCHHHHhCCCCE
Confidence 58999998 99999999998876 6 5777777654 22222221 11 110 00 1257788999999
Q ss_pred EEEccC
Q 023490 182 VLLLIS 187 (281)
Q Consensus 182 ViLavP 187 (281)
|+++..
T Consensus 72 Vvi~ag 77 (314)
T 1mld_A 72 VVIPAG 77 (314)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 999874
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0048 Score=59.21 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=54.5
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc---ccHHHHHHCCceecCCCcCCHHhhcCc-CCE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDL 181 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~---~s~~~A~~~G~~~~~~t~~~~~E~l~~-ADV 181 (281)
.+++| |+|.|||.|..|.+.|+.|++. |++|.+.+++.. ...+..++.|+....+ ...++.+.+ +|+
T Consensus 5 ~~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g--~~~~~~~~~~~d~ 75 (451)
T 3lk7_A 5 TTFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVVCG--SHPLELLDEDFCY 75 (451)
T ss_dssp CTTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEEES--CCCGGGGGSCEEE
T ss_pred hhcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEEEC--CChHHhhcCCCCE
Confidence 56789 9999999999999999999999 999998887542 2234455678764211 133456676 899
Q ss_pred EEEc--cCC
Q 023490 182 VLLL--ISD 188 (281)
Q Consensus 182 ViLa--vP~ 188 (281)
|++. +|+
T Consensus 76 vv~spgi~~ 84 (451)
T 3lk7_A 76 MIKNPGIPY 84 (451)
T ss_dssp EEECTTSCT
T ss_pred EEECCcCCC
Confidence 9984 554
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0061 Score=57.12 Aligned_cols=72 Identities=22% Similarity=0.222 Sum_probs=45.5
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHH--HCC--ceecC--CCcCCHHhhcCc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEEN--GTLGDIYETISG 178 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~--~~G--~~~~~--~t~~~~~E~l~~ 178 (281)
.... ++|+|||.|.||.++|..|... |. ++.+.+....+....+. ... +.... ....+. +.+++
T Consensus 16 ~~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~ 87 (331)
T 4aj2_A 16 QVPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTAN 87 (331)
T ss_dssp -CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTT
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCC
Confidence 3556 9999999999999999999877 76 77777765322222221 111 11000 002244 46999
Q ss_pred CCEEEEcc
Q 023490 179 SDLVLLLI 186 (281)
Q Consensus 179 ADVViLav 186 (281)
||+|+++.
T Consensus 88 aDiVvi~a 95 (331)
T 4aj2_A 88 SKLVIITA 95 (331)
T ss_dssp EEEEEECC
T ss_pred CCEEEEcc
Confidence 99999975
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0038 Score=60.57 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=52.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh-cCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~-l~~ADVViLavP 187 (281)
|+|-|+|+|.+|..+|+.|... |++|++-+.......+...+.++..-.|...+ ++++ +++||+++.+++
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~ 77 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE------NNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTN 77 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST------TEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcC
Confidence 8999999999999999999988 99998887664432233445564321222333 3344 899999998888
Q ss_pred ChhH
Q 023490 188 DAAQ 191 (281)
Q Consensus 188 ~~~~ 191 (281)
..+.
T Consensus 78 ~De~ 81 (461)
T 4g65_A 78 TDET 81 (461)
T ss_dssp CHHH
T ss_pred ChHH
Confidence 7554
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0058 Score=57.24 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=55.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-cee-cCCCcCCHHhhcCcCCEEEEccCC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTE-ENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~-~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
++|+|+| .|.+|+.+.+.|... .+++++...+......+.....+ +.. .+-...+.++ +.++|+|++|+|.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPH 78 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCc
Confidence 6899999 799999999999865 13466554443211111111011 000 0001223334 5789999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
....+.....+ +.|..+|+.++
T Consensus 79 ~~s~~~a~~~~---~aG~~VId~Sa 100 (345)
T 2ozp_A 79 GVFAREFDRYS---ALAPVLVDLSA 100 (345)
T ss_dssp THHHHTHHHHH---TTCSEEEECSS
T ss_pred HHHHHHHHHHH---HCCCEEEEcCc
Confidence 87766665543 56787887665
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.001 Score=58.64 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=51.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVViLavP~~~ 190 (281)
++++|||+|++|.++++.+... . |++++...+.+..... ..-.|+... ...+++++++ +.|+|++++|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g-~~i~gv~V~--~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVG-RPVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTT-CEETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHh-hhhcCCeee--cHHhHHHHHHcCCCEEEEeCCchh
Confidence 7899999999999999863222 2 6776655444322111 111233321 1457888886 5999999999987
Q ss_pred HHHHHHHHHh
Q 023490 191 QADNYEKIFS 200 (281)
Q Consensus 191 ~~~vl~ei~~ 200 (281)
+.++.+.+..
T Consensus 153 ~~ei~~~l~~ 162 (211)
T 2dt5_A 153 AQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666665543
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.001 Score=58.95 Aligned_cols=122 Identities=11% Similarity=0.161 Sum_probs=68.7
Q ss_pred cccccccchhhhhhhhhcccchhhhhcCCCccccc---ccc---cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEE
Q 023490 70 FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLL---PDA---FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143 (281)
Q Consensus 70 ~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~---~~~---l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~V 143 (281)
..+-++.+.-|++.-.|...+ .|+-.+.-..+ +.. +...++++|||.|++|.++++.+... ..|+++
T Consensus 40 ~~~gv~~~qiRkDls~fg~~G---~~g~GY~V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aLa~~~~~~----~~g~~i 112 (212)
T 3keo_A 40 DALGIDSATVRRDFSYFGELG---RRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHD----RNKMQI 112 (212)
T ss_dssp HHHTSCHHHHHHHHHTTGGGT---TTSSSEEHHHHHHHHHHHTTTTSCEEEEEECCSHHHHHHTTCCCCT----TSSEEE
T ss_pred HHHCCCHHHHHHHHHHHhhcC---CCCCCEEHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHhhhcc----cCCeEE
Confidence 445666677777544444433 22223310000 111 22237899999999999999874211 127877
Q ss_pred EEEecCCcc-cHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCChhHHHHHHHHHh
Q 023490 144 KVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDAAQADNYEKIFS 200 (281)
Q Consensus 144 iig~r~~~~-s~~~A~~~G~~~~~~t~~~~~E~l~~--ADVViLavP~~~~~~vl~ei~~ 200 (281)
+.+.+.++. ....+.-.|+...+ ..++++++++ .|+++|++|.....++.+.+.+
T Consensus 113 Vg~~D~dp~~kiG~~~i~GvpV~~--~~dL~~~v~~~~Id~vIIAvPs~~aq~v~d~lv~ 170 (212)
T 3keo_A 113 SMAFDLDSNDLVGKTTEDGIPVYG--ISTINDHLIDSDIETAILTVPSTEAQEVADILVK 170 (212)
T ss_dssp EEEEECTTSTTTTCBCTTCCBEEE--GGGHHHHC-CCSCCEEEECSCGGGHHHHHHHHHH
T ss_pred EEEEeCCchhccCceeECCeEEeC--HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHH
Confidence 655554432 21110113554321 3578888874 9999999999776666665443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0083 Score=52.28 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=51.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
+|+|.|+|.|.+|..+++.|.+. |++|++..|...+ .+.....++....+...+++ ++++|+||.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPDQ-MEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGGG-HHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChhh-hhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 38999999999999999999999 9999888887543 33334455543222233443 88999999988653
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0062 Score=56.89 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=60.9
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+ ..|+.+|..|... +..|.++..+ ..++.+.+++||+|+.
T Consensus 175 i~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~ 228 (303)
T 4b4u_A 175 IEIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVG 228 (303)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEe
Confidence 47999 999999976 6699999999988 8988877543 2377889999999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. ..++|||++||+++
T Consensus 229 A~G~p~---~i~--~d~vk~GavVIDVG 251 (303)
T 4b4u_A 229 AVGKAE---LIQ--KDWIKQGAVVVDAG 251 (303)
T ss_dssp CSCSTT---CBC--GGGSCTTCEEEECC
T ss_pred ccCCCC---ccc--cccccCCCEEEEec
Confidence 987533 333 24689999999864
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0039 Score=50.48 Aligned_cols=110 Identities=18% Similarity=0.112 Sum_probs=74.6
Q ss_pred CcEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 111 INQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
.++|+|||. +..|..+.++|++. |++|+-.+.+..+ -.|... +.++.|+=. -|++++++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~dlp~-vDlavi~~ 66 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE------VLGKTI----INERPVIEG-VDTVTLYI 66 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE------ETTEEC----BCSCCCCTT-CCEEEECS
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc------CCCeec----cCChHHCCC-CCEEEEEe
Confidence 378999997 56899999999999 8887655554321 145553 556767666 99999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
|+....+++++.... .... |++..|+.-..+.+ ..-..++.++ ||+.|=.+
T Consensus 67 p~~~v~~~v~e~~~~-g~k~-v~~~~G~~~~e~~~--~a~~~Girvv---~nC~gv~l 117 (122)
T 3ff4_A 67 NPQNQLSEYNYILSL-KPKR-VIFNPGTENEELEE--ILSENGIEPV---IGCTLVML 117 (122)
T ss_dssp CHHHHGGGHHHHHHH-CCSE-EEECTTCCCHHHHH--HHHHTTCEEE---ESCHHHHH
T ss_pred CHHHHHHHHHHHHhc-CCCE-EEECCCCChHHHHH--HHHHcCCeEE---CCcCeEEe
Confidence 999888889876654 2334 66888986433332 1113466665 37766554
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0028 Score=61.32 Aligned_cols=119 Identities=9% Similarity=0.098 Sum_probs=67.7
Q ss_pred cc-cCCCcEEEEEccCchHHHHHHHHHh-hhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCE-E
Q 023490 106 DA-FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL-V 182 (281)
Q Consensus 106 ~~-l~G~ktIGIIG~G~mG~AiA~~Lra-~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADV-V 182 (281)
.+ |+| +|++|+|+|+||+.+|+.|++ + |++|+.+.+..... +.. + ..+++++++.+|. .
T Consensus 207 ~~~l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~~g~~--------~~~-~--gvdl~~L~~~~d~~~ 268 (419)
T 1gtm_A 207 WDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDSKGGI--------YNP-D--GLNADEVLKWKNEHG 268 (419)
T ss_dssp CSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECSSCEE--------EEE-E--EECHHHHHHHHHHHS
T ss_pred CcccCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCCCccc--------cCc-c--CCCHHHHHHHHHhcC
Confidence 45 999 999999999999999999999 8 99988775553210 111 0 1256666654443 2
Q ss_pred EEccCChhHHHHHH-HHHhcCCCCcEEEEe-CCcch--hhhhhcccCCCCCceEEEeccCCCChh-hHHhhhhC
Q 023490 183 LLLISDAAQADNYE-KIFSCMKPNSILGLS-HGFLL--GHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQG 251 (281)
Q Consensus 183 iLavP~~~~~~vl~-ei~~~mKpgaILi~a-aG~~l--~~l~~~~~~~~~~i~VIrvmPntpg~~-vr~~y~~g 251 (281)
+| +|...... ++ +.+..||+ .+++-+ .|-.+ ..++ .+ +-.+|.-.=|.|-++ -+.++...
T Consensus 269 ~l-~~l~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a~~----aL--~~~~I~~aAneP~t~~a~~ll~~~ 333 (419)
T 1gtm_A 269 SV-KDFPGATN-ITNEELLELEV-DVLAPAAIEEVITKKNAD----NI--KAKIVAEVANGPVTPEADEILFEK 333 (419)
T ss_dssp SS-TTCTTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTGGG----GC--CCSEEECCSSSCBCHHHHHHHHHT
T ss_pred Ee-ecCccCee-eCHHHHHhCCC-CEEEECCCcccCCHHHHH----Hh--cCCEEEEeeCCCCCcchHHHHhcC
Confidence 22 33322222 43 45567887 577754 34222 2222 22 223443333555433 36677653
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.016 Score=53.19 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=51.2
Q ss_pred CcEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEc--
Q 023490 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL-- 185 (281)
Q Consensus 111 ~ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~~G~~~~~~t~~~~~E~l-~~ADVViLa-- 185 (281)
+|+|.|||.|-+|-+ +|+.|++. |++|.+.|++... ..+..++.|+....+ .+.+++. .++|+|++.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEECCC
Confidence 489999999999996 99999999 9999998876432 234456678765311 2444555 589999984
Q ss_pred cCC
Q 023490 186 ISD 188 (281)
Q Consensus 186 vP~ 188 (281)
+|+
T Consensus 76 i~~ 78 (326)
T 3eag_A 76 AKR 78 (326)
T ss_dssp CCT
T ss_pred cCC
Confidence 554
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0068 Score=57.11 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=56.2
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee----cCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----ENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~----~~~t~~~~~E~l~~ADVViLav 186 (281)
++|+|+| .|.+|+.+++.|... ..++++...+..+...+.....+.-. .+-...+ ++.++++|+|++|+
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~at 90 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-----PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCL 90 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-----SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-----CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcC
Confidence 6899999 899999999999876 13466555443221111222222100 0000122 45567899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|.....+... .+ +.|..+++.++
T Consensus 91 p~~~s~~~a~---~~-~aG~~VId~sa 113 (359)
T 1xyg_A 91 PHGTTQEIIK---EL-PTALKIVDLSA 113 (359)
T ss_dssp CTTTHHHHHH---TS-CTTCEEEECSS
T ss_pred CchhHHHHHH---HH-hCCCEEEECCc
Confidence 9876655444 33 67888887766
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.019 Score=47.67 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=46.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhcCcCCEEEEccCC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~-~~E~l~~ADVViLavP~ 188 (281)
|+|.|+| .|.+|.++++.|.+. |++|++..|...+..+.. .++..-.....+ ..+.+.++|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 5799999 699999999999999 999998888754321111 333211011111 11678999999998765
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.011 Score=57.59 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=65.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc---EEEEEe----cC----Cccc---HH-----HHHHCCceecC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---FA-----EARAAGFTEEN 166 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~---~Viig~----r~----~~~s---~~-----~A~~~G~~~~~ 166 (281)
..+++ +++.|+|.|..|.+++..|.+. |. +|.+.+ |+ ..+. .. .+......
T Consensus 182 ~~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~--- 251 (439)
T 2dvm_A 182 KKISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE--- 251 (439)
T ss_dssp CCTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---
Confidence 46788 9999999999999999999998 87 788888 76 2111 10 01111110
Q ss_pred CCcCCHHhhcCcCCEEEEccCC--hhHHHHHHHHHhcCCCCcEEEEe
Q 023490 167 GTLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~--~~~~~vl~ei~~~mKpgaILi~a 211 (281)
....++.|+++++|+||-++|. ....+ +....|+++.+|.+.
T Consensus 252 ~~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDL 295 (439)
T 2dvm_A 252 NIEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPL 295 (439)
T ss_dssp CCCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEEC
T ss_pred cccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEEC
Confidence 0134688999999999999997 43322 345678888888766
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0083 Score=56.39 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=56.7
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEe-cCC--c--ccHHHHH--HCCceecCCCcC---CHHhhcCcC
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKG--S--RSFAEAR--AAGFTEENGTLG---DIYETISGS 179 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~-r~~--~--~s~~~A~--~~G~~~~~~t~~---~~~E~l~~A 179 (281)
|++|+||| .|.+|+.+.+.|... .++++.... +.+ + +.....- -.|... -... +.+++++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~--~~v~~~~~~~~~~~~~ 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIVE--LPLQPMSDISEFSPGV 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCC--CBEEEESSGGGTCTTC
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCccc--eeEeccCCHHHHhcCC
Confidence 57999999 699999999998874 145654433 321 1 2221110 012110 0011 344555899
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|+||+|+|.....+...++. +.|+.+|+.++
T Consensus 77 Dvvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa 107 (337)
T 3dr3_A 77 DVVFLATAHEVSHDLAPQFL---EAGCVVFDLSG 107 (337)
T ss_dssp SEEEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 99999999877666666553 45888887655
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.019 Score=56.53 Aligned_cols=74 Identities=20% Similarity=0.122 Sum_probs=44.6
Q ss_pred cEEEEEccCchH--HHHHHHHHhhhhhccC-CcEEEEEecCCcccHH---HHH----HCCceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFA---EAR----AAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG--~AiA~~Lra~~~~~~~-G~~Viig~r~~~~s~~---~A~----~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
+||+|||.|.|| .++|..|... .+. +.+|.++++..++... ... ..+....-....+.++++++||+
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~---~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~ 80 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKT---PGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 80 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC---GGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred CEEEEECCCchHHHHHHHHHHHhc---CcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCE
Confidence 699999999974 6566676532 112 5688888876432111 011 11111000113477889999999
Q ss_pred EEEccCC
Q 023490 182 VLLLISD 188 (281)
Q Consensus 182 ViLavP~ 188 (281)
||+++|.
T Consensus 81 VIiaagv 87 (480)
T 1obb_A 81 VINTAMV 87 (480)
T ss_dssp EEECCCT
T ss_pred EEECCCc
Confidence 9999974
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=58.07 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=65.0
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEE-EEecCCccc--HHHHH-----HCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRS--FAEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s--~~~A~-----~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
++|+|+|+ |.||+.+++.+... .|++++ +.++...+. .+... ..++.. ..+++++++++|+|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV 76 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 76 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence 68999998 99999999987753 167765 334332110 00000 112221 34677888899999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEE-eCCcchhhhhhcccCCCCCceEEEeccCC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKG 239 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~-aaG~~l~~l~~~~~~~~~~i~VIrvmPnt 239 (281)
+-.++|....+++...+.+ |.-+++ ..|+.....+..... .+... +...||+
T Consensus 77 IDft~p~~~~~~~~~a~~~---G~~vVigTtG~~~e~~~~L~~~-a~~~~-vv~a~N~ 129 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQAIRDA-AADIA-IVFAANF 129 (273)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHH-TTTSC-EEECSCC
T ss_pred EEcCChHHHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHh-cCCCC-EEEEecC
Confidence 9777776666666544433 443433 567775433221101 23344 4556764
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0066 Score=55.25 Aligned_cols=81 Identities=15% Similarity=0.007 Sum_probs=53.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
++|++||+|+||+.+++. + ++++....+ ++.. +.|+.. ..|+++++++.|+|+-|.+....
T Consensus 13 ~rV~i~G~GaIG~~v~~~-~--------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av 73 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL-G--------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV 73 (253)
T ss_dssp CEEEEECCSHHHHHHHHH-S--------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred ceEEEECcCHHHHHHHhc-C--------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence 899999999999999997 2 455433332 1111 125543 45788998999999999876644
Q ss_pred HHHHHHHHhcCCCCcEE-EEeCCc
Q 023490 192 ADNYEKIFSCMKPNSIL-GLSHGF 214 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaIL-i~aaG~ 214 (281)
.+. ..+.|+.|.-+ +.+-|.
T Consensus 74 ~e~---~~~iL~aG~dvv~~S~ga 94 (253)
T 1j5p_A 74 KEY---SLQILKNPVNYIIISTSA 94 (253)
T ss_dssp HHH---HHHHTTSSSEEEECCGGG
T ss_pred HHH---HHHHHHCCCCEEEcChhh
Confidence 333 34456677744 455553
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.011 Score=57.33 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=65.2
Q ss_pred cEEEEEccC----chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWG----SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G----~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||.+ .+|..+.++|++. | +..|.-.+.+..+ -.|... +.++.|+-+..|++++++|
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~----g-~~~v~pVnP~~~~------i~G~~~----y~sl~~lp~~~Dlavi~vp 73 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEY----K-KGKVYPVNIKEEE------VQGVKA----YKSVKDIPDEIDLAIIVVP 73 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC----C-SSEEEEECSSCSE------ETTEEC----BSSTTSCSSCCSEEEECSC
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHc----C-CCEEEEECCCCCe------ECCEec----cCCHHHcCCCCCEEEEecC
Confidence 899999998 7899999999877 2 2455444433221 146664 6678888888999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+....+++++.... ....+|++..||.
T Consensus 74 ~~~~~~~v~e~~~~-Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 74 KRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (457)
T ss_dssp HHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred HHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 99888888876554 3345777888884
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.016 Score=55.78 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=51.2
Q ss_pred ccCCCcEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
++..+|+|.|||+|..|.+ +|+.|.+. |++|.+.+.......+..++.|+....+. +. +.++.+|+|++.
T Consensus 14 ~~~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g~--~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 14 EMRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYIGH--AE-EHIEGASVVVVS 84 (475)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEESC--CG-GGGTTCSEEEEC
T ss_pred ccccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEECCC--CH-HHcCCCCEEEEC
Confidence 3455589999999999997 99999998 99998888765443344566787653221 23 456789999884
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.024 Score=50.85 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=39.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEEccCCh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVViLavP~~ 189 (281)
++|+|+|+ |.||+.+++.+... .+++++...+... ++++++. ++|+|+=.+++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~~-------------------dl~~~~~~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAGD-------------------PLSLLTDGNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTTC-------------------CTHHHHHTTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccCC-------------------CHHHHhccCCcEEEEccChH
Confidence 48999995 99999999998753 1678765554321 2333332 567666566655
Q ss_pred hHHHHHHH
Q 023490 190 AQADNYEK 197 (281)
Q Consensus 190 ~~~~vl~e 197 (281)
...+++..
T Consensus 57 a~~~~~~~ 64 (245)
T 1p9l_A 57 VVMGNLEF 64 (245)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0042 Score=53.35 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=56.8
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEc
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViLa 185 (281)
||+|.|.| .|.||.++++.|.+. | ++|++..|...+..+ ....++..-..... +++++++++|+||.+
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~ 95 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYAN 95 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGSCS-SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEE
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhhcc-cccCCcEEEEecCCCHHHHHHHhcCCCEEEEc
Confidence 38999999 799999999999998 9 898888876432111 01112211111122 345678999999987
Q ss_pred cCChhHHHHHHHHHhcC---CCCcEEEEe
Q 023490 186 ISDAAQADNYEKIFSCM---KPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~m---KpgaILi~a 211 (281)
..........+.+++.| +.+.+|.++
T Consensus 96 a~~~~~~~~~~~~~~~~~~~~~~~iV~iS 124 (236)
T 3qvo_A 96 LTGEDLDIQANSVIAAMKACDVKRLIFVL 124 (236)
T ss_dssp CCSTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCchhHHHHHHHHHHHHcCCCEEEEEe
Confidence 77644322223334333 234455444
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.019 Score=56.02 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=55.8
Q ss_pred cEEEEEccCchHHHHHHHHHhh---hh-hccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~---~~-~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLa 185 (281)
.+|||||+|.+|+.+++.|... +. ..+.+++|....+.+....+.. ..+... +.+.+|+++ +.|+|+.+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~----~~d~~ell~d~diDvVve~ 85 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPL----TTNPFDVVDDPEIDIVVEL 85 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCE----ESCTHHHHTCTTCCEEEEC
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcc----cCCHHHHhcCCCCCEEEEc
Confidence 3799999999999999887642 11 1233666553333322211111 123222 458889986 58999999
Q ss_pred cCC-hhHHHHHHHHHhcCCCCcEEEEe
Q 023490 186 ISD-AAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~-~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|. ..+.+++.+. |+.|..|+..
T Consensus 86 tp~~~~h~~~~~~A---L~aGKhVvte 109 (444)
T 3mtj_A 86 IGGLEPARELVMQA---IANGKHVVTA 109 (444)
T ss_dssp CCSSTTHHHHHHHH---HHTTCEEEEC
T ss_pred CCCchHHHHHHHHH---HHcCCEEEEC
Confidence 996 5555555443 4457766654
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.013 Score=54.75 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=54.0
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEe--cC-CcccHHHHHHCCce--------ecCCCc--CCHHhhcC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL--RK-GSRSFAEARAAGFT--------EENGTL--GDIYETIS 177 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~--r~-~~~s~~~A~~~G~~--------~~~~t~--~~~~E~l~ 177 (281)
++|||+| .|.+|+.+.+.|... ..+++.... +. ..+.. ....+.. ..+-.+ .+.++ ++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~ 76 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKY--KDAVKWIEQGDIPEEVQDLPIVSTNYED-HK 76 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBH--HHHCCCCSSSSCCHHHHTCBEECSSGGG-GT
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCH--HHhcCcccccccccCCceeEEeeCCHHH-hc
Confidence 6899999 899999999988765 135665443 21 11111 1111110 000001 13333 47
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|+|++|+|.....++....+ +.|..|++..+
T Consensus 77 ~vDvVf~atp~~~s~~~a~~~~---~aG~~VId~s~ 109 (350)
T 2ep5_A 77 DVDVVLSALPNELAESIELELV---KNGKIVVSNAS 109 (350)
T ss_dssp TCSEEEECCCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCCEEEECCChHHHHHHHHHHH---HCCCEEEECCc
Confidence 8999999999877666666544 34676777654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0081 Score=53.87 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=51.5
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC----CceecCCCcC---CHHhhcCc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLG---DIYETISG 178 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~----G~~~~~~t~~---~~~E~l~~ 178 (281)
+++| +++.|+| .|-+|.++++.|.+. |.+|++.+|..++..+.+.+. ++........ +.++++++
T Consensus 116 ~l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 188 (287)
T 1lu9_A 116 SVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKG 188 (287)
T ss_dssp CCTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTT
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHh
Confidence 4789 9999999 999999999999998 999888888744332222221 2110000022 24567888
Q ss_pred CCEEEEccCC
Q 023490 179 SDLVLLLISD 188 (281)
Q Consensus 179 ADVViLavP~ 188 (281)
.|+||.+++.
T Consensus 189 ~DvlVn~ag~ 198 (287)
T 1lu9_A 189 AHFVFTAGAI 198 (287)
T ss_dssp CSEEEECCCT
T ss_pred CCEEEECCCc
Confidence 9999999874
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.033 Score=51.47 Aligned_cols=68 Identities=12% Similarity=0.128 Sum_probs=44.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHH--HC-Cc--eecCC-CcCCHHhhcCcCCEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEAR--AA-GF--TEENG-TLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~--~~-G~--~~~~~-t~~~~~E~l~~ADVV 182 (281)
+||+||| .|.+|.+++..|... | .+|.+.+.... ...+. .. .. ....- ...+.+++++++|+|
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLI 80 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEE
Confidence 7999999 899999999999877 7 57777665433 21221 11 11 11000 012557889999999
Q ss_pred EEccC
Q 023490 183 LLLIS 187 (281)
Q Consensus 183 iLavP 187 (281)
|++.+
T Consensus 81 i~~ag 85 (326)
T 1smk_A 81 IVPAG 85 (326)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99875
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.016 Score=56.24 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=73.5
Q ss_pred cccCCCcEEEEEccC----------chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-C-CceecCCCcCCHH
Q 023490 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIY 173 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G----------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~-G~~~~~~t~~~~~ 173 (281)
..++| ++|+|.|+- +-...+++.|.+. |.+|.+++..-. +.+++ + ++.. ..+.+
T Consensus 318 ~~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~DP~~~---~~~~~~~~~~~~----~~~~~ 383 (446)
T 4a7p_A 318 GDVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYDPEGV---EQASKMLTDVEF----VENPY 383 (446)
T ss_dssp SCCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEECSSCH---HHHGGGCSSCCB----CSCHH
T ss_pred ccCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCC---HhHHHhcCCceE----ecChh
Confidence 45899 999999987 6788999999998 999998887532 23322 2 3432 45788
Q ss_pred hhcCcCCEEEEccCChhHHH-HHHHHHhcCCCCcEEEEeCCcc-hhhhhh
Q 023490 174 ETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL-LGHLQS 221 (281)
Q Consensus 174 E~l~~ADVViLavP~~~~~~-vl~ei~~~mKpgaILi~aaG~~-l~~l~~ 221 (281)
|+++++|+|++++.-.+... -++++...|+. .+|++..++. ...++.
T Consensus 384 ~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~~~~~~~~~ 432 (446)
T 4a7p_A 384 AAADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNIYPPAELER 432 (446)
T ss_dssp HHHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCCSCHHHHHH
T ss_pred HHhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCCCCHHHHHh
Confidence 99999999999999876544 24567777764 5788888754 334443
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.02 Score=53.48 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=55.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhh-hhccCCcEEE-EEecCCcc--------c-HHHHHHCCceecCCCcCCHHhhcC--c
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVK-VGLRKGSR--------S-FAEARAAGFTEENGTLGDIYETIS--G 178 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~-~~~~~G~~Vi-ig~r~~~~--------s-~~~A~~~G~~~~~~t~~~~~E~l~--~ 178 (281)
.+|+|||+|+||+.+++.|...- ...|.+++|+ +++++... . .+...+.|... ...+ +.+|++. +
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~~~-d~~e~l~~~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DRAF-SGPEDLMGEA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SSBC-CSGGGGTTSC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cccC-CHHHHhcCCC
Confidence 47999999999999999997630 1112245554 33433210 0 11223334211 0012 5567764 5
Q ss_pred CCEEEEccCChhHH-HHHHHHHhcCCCCcEEEEe
Q 023490 179 SDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 179 ADVViLavP~~~~~-~vl~ei~~~mKpgaILi~a 211 (281)
.|+|+.++|...+. ..++-....++.|..|+.+
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 89999999986442 2233344456667777654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.027 Score=54.43 Aligned_cols=95 Identities=14% Similarity=0.188 Sum_probs=69.1
Q ss_pred cccCCCcEEEEEccC----------chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HCC--ceecCCCcCCH
Q 023490 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAG--FTEENGTLGDI 172 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G----------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~G--~~~~~~t~~~~ 172 (281)
..++| ++|+|.|+- +-...+++.|.+. |.+|.++++.-. +.++ ..+ +.. ..+.
T Consensus 314 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~---~~~~~~~~~~~~~----~~~~ 379 (450)
T 3gg2_A 314 GNVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYDPVAM---KEAQKRLGDKVEY----TTDM 379 (450)
T ss_dssp TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSCH---HHHHHHHGGGSEE----CSSH
T ss_pred ccCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCc---HHHHHhcCcccee----cCCH
Confidence 45799 999999973 3467888899888 999998887642 2222 233 332 4578
Q ss_pred HhhcCcCCEEEEccCChhHHH-HHHHHHhcCCCCcEEEEeCCcc
Q 023490 173 YETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~~-vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+|+++++|.|+++|.-.+... -++++...|+ +.+|+|..++.
T Consensus 380 ~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~~ 422 (450)
T 3gg2_A 380 YDAVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNVY 422 (450)
T ss_dssp HHHTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCCC
T ss_pred HHHhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCCC
Confidence 899999999999999877654 2456666776 56888887753
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.026 Score=52.71 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=54.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC--CcccHHHHHHCC----------------ceecCC------
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAG----------------FTEENG------ 167 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~--~~~s~~~A~~~G----------------~~~~~~------ 167 (281)
.+|||+|+|.||+.+++.|... .+++|+...+. +........++. +.. ++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~ 77 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF 77 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence 5899999999999999998765 15776655542 222111111110 000 00
Q ss_pred CcCCHHhhc---CcCCEEEEccCChhHHHHHHHHHhcCCCCc-EEEEeC
Q 023490 168 TLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSH 212 (281)
Q Consensus 168 t~~~~~E~l---~~ADVViLavP~~~~~~vl~ei~~~mKpga-ILi~aa 212 (281)
...+++++- .++|+|+.|+|.....+... .+++.|+ .|++++
T Consensus 78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~iSa 123 (335)
T 1u8f_O 78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVIISA 123 (335)
T ss_dssp CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEESS
T ss_pred ecCCHHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEecc
Confidence 012455542 57999999999877655444 4456675 455554
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.041 Score=46.24 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=48.0
Q ss_pred cEEEEEc-cCchHHHHHHHHH-hhhhhccCCcEEEEEecCCc-ccHHHH-HHCCceecCCCcC---CHHhhcCcCCEEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLG---DIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~~-~s~~~A-~~~G~~~~~~t~~---~~~E~l~~ADVViL 184 (281)
|+|.|+| .|.||.++++.|. +. |++|++..|... +..+.+ ...++..-..... +++++++++|+|+.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 5699999 6999999999999 78 999988887643 221111 1122211111122 34567899999999
Q ss_pred ccCCh
Q 023490 185 LISDA 189 (281)
Q Consensus 185 avP~~ 189 (281)
+....
T Consensus 80 ~ag~~ 84 (221)
T 3r6d_A 80 GAMES 84 (221)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 88763
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0071 Score=56.28 Aligned_cols=68 Identities=22% Similarity=0.173 Sum_probs=46.2
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcCC---HHhhcCcCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~~---~~E~l~~ADVVi 183 (281)
+.| ++|+|||.|.+|..+++.+++. |++|++.+...... ...+ ..... ..+.+ +.++++++|+|.
T Consensus 12 ~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~~~~~~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvI~ 80 (389)
T 3q2o_A 12 LPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPTKNSPCAQVA--DIEIV--ASYDDLKAIQHLAEISDVVT 80 (389)
T ss_dssp CTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSTTCTTTTTC--SEEEE--CCTTCHHHHHHHHHTCSEEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchHHhC--CceEe--cCcCCHHHHHHHHHhCCEee
Confidence 688 9999999999999999999999 99988887543211 0101 01111 11223 557888999986
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
...
T Consensus 81 ~~~ 83 (389)
T 3q2o_A 81 YEF 83 (389)
T ss_dssp ESC
T ss_pred ecc
Confidence 543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0083 Score=55.36 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=43.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~-------G~~~~~~t~~~~~E~l~~ADVV 182 (281)
|||+|||.|.+|+++|..|... +. ++.+++.......-.+.+. +..... ...+..+.+++||+|
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i-~~~~d~~~~~~aDvV 73 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKI-VGGADYSLLKGSEII 73 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEE-EEESCGGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeE-ecCCCHHHhCCCCEE
Confidence 6899999999999999999887 65 6777765532222222211 110000 012234679999999
Q ss_pred EEcc
Q 023490 183 LLLI 186 (281)
Q Consensus 183 iLav 186 (281)
++..
T Consensus 74 vitA 77 (294)
T 2x0j_A 74 VVTA 77 (294)
T ss_dssp EECC
T ss_pred EEec
Confidence 9965
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0098 Score=56.11 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=53.7
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCC------cEEEEEecCCc--ccHHHH----HH-CCceecCCCcCCHHhhcC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD------IVVKVGLRKGS--RSFAEA----RA-AGFTEENGTLGDIYETIS 177 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G------~~Viig~r~~~--~s~~~A----~~-~G~~~~~~t~~~~~E~l~ 177 (281)
++|+|+| .|.+|+.+.+.|.+. + +++....+... +..... .. .....+ ..+. +.++
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~~-~~~~ 79 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTEA-AVLG 79 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECCH-HHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCCH-HHhc
Confidence 7999999 999999999999876 5 35544433211 111100 00 011110 1133 4466
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++|+||+|+|.....++.... +.|..+|+.++
T Consensus 80 ~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa 111 (352)
T 2nqt_A 80 GHDAVFLALPHGHSAVLAQQL----SPETLIIDCGA 111 (352)
T ss_dssp TCSEEEECCTTSCCHHHHHHS----CTTSEEEECSS
T ss_pred CCCEEEECCCCcchHHHHHHH----hCCCEEEEECC
Confidence 899999999987655555543 56888887654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.019 Score=52.46 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=67.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
+| .+|.|+|.|.+|...++.++.. |.+|+..++.. +..+.+++.|.... ..+.+++.+..|+|+-++..
T Consensus 176 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~~-~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 176 KG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFARNE-HKKQDALSMGVKHF---YTDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSS-TTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCCS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCCc
Confidence 68 9999999999999999999998 99887666554 45678888886531 23444444479999999886
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
.. .++..+..++++-.++..+
T Consensus 245 ~~---~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 245 HY---DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp CC---CHHHHHTTEEEEEEEEECC
T ss_pred HH---HHHHHHHHHhcCCEEEEEC
Confidence 53 3556667888877766553
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.011 Score=55.67 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=46.7
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHH--HC-Ccee-cCCCcCCHHhhcCcC
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AA-GFTE-ENGTLGDIYETISGS 179 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~--~~-G~~~-~~~t~~~~~E~l~~A 179 (281)
-+.+ +||+|||. |.+|.++|..+... |. +|.+.+....+....+. +. .+.. .-....+..+.+++|
T Consensus 5 ~~~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dA 77 (343)
T 3fi9_A 5 YLTE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDA 77 (343)
T ss_dssp CSCS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTE
T ss_pred ccCC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCC
Confidence 3456 89999997 99999999988887 64 67777654321111111 11 1110 000124677889999
Q ss_pred CEEEEcc
Q 023490 180 DLVLLLI 186 (281)
Q Consensus 180 DVViLav 186 (281)
|+|+++.
T Consensus 78 DvVvita 84 (343)
T 3fi9_A 78 KYIVSSG 84 (343)
T ss_dssp EEEEECC
T ss_pred CEEEEcc
Confidence 9999985
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.075 Score=48.91 Aligned_cols=92 Identities=17% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcC-----cC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETIS-----GS 179 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l~-----~A 179 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|....-... .++.+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTH-KDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSC-GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCC-HHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 98 66655544 4456778888864210001 13333332 58
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCC-cEEEEe
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpg-aILi~a 211 (281)
|+|+-++... ..+.+.+..++++ -.++..
T Consensus 263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 263 DYAVECAGRI---ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHHhcCCCEEEEE
Confidence 9999998753 2466777888887 665544
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.053 Score=45.23 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=46.4
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhcCcCCEEEEccCC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~-~~E~l~~ADVViLavP~ 188 (281)
|+|.|+|. |.+|..+++.|.+. |++|++..|...+ .+.....++..-.....+ ..+.++++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEecccc-cccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 57999996 99999999999999 9999888876432 221111233221011111 11678999999998754
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.078 Score=49.49 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=65.4
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHH----HHHHCC--ceecCCCcCCHHh
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFA----EARAAG--FTEENGTLGDIYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~----~A~~~G--~~~~~~t~~~~~E 174 (281)
..|+| .+|++||= +++..+++..+..+ |++|.+..++.-. -.+ .+++.| +.. ..+++|
T Consensus 151 g~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~----~~d~~e 219 (315)
T 1pvv_A 151 GTIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL----LHDPVK 219 (315)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE----ESCHHH
T ss_pred CCcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 46899 99999995 89999999999998 9999888765421 112 233566 332 568999
Q ss_pred hcCcCCEEEEccC------C--hhHHHH---H--H-HHHhcCCCCcEEEE
Q 023490 175 TISGSDLVLLLIS------D--AAQADN---Y--E-KIFSCMKPNSILGL 210 (281)
Q Consensus 175 ~l~~ADVViLavP------~--~~~~~v---l--~-ei~~~mKpgaILi~ 210 (281)
+++++|+|..-+= . ....+. | + ++++..||++++.-
T Consensus 220 av~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH 269 (315)
T 1pvv_A 220 AVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMH 269 (315)
T ss_dssp HTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEE
T ss_pred HhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEEC
Confidence 9999999999442 1 111111 1 2 67777888877764
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.029 Score=49.90 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=55.9
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHHHHHH-----
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~~A~~----- 159 (281)
...|++ ++|.|||+|-+|..++++|... |. ++.+.++.. .+....+++
T Consensus 23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 456888 9999999999999999999998 76 566664431 111111111
Q ss_pred CCceec--CCCc--CCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 160 ~G~~~~--~~t~--~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
.++..+ .... .+.++.++++|+|+.++........+++..
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~ 139 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAAC 139 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 122110 0001 134567889999999998766555666544
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.045 Score=50.99 Aligned_cols=72 Identities=14% Similarity=0.079 Sum_probs=52.4
Q ss_pred cccC-CCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhh
Q 023490 106 DAFN-GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYET 175 (281)
Q Consensus 106 ~~l~-G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G~~~~~~t~~~~~E~ 175 (281)
..|+ | .+|++|| .+++..+++..+..+ |++|.+..+++- .-.+. +++.|...+ ...+++|+
T Consensus 141 g~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~ea 211 (307)
T 3tpf_A 141 KMQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKIS--LGYDKFEA 211 (307)
T ss_dssp CCGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHH
T ss_pred CCCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 3588 9 9999999 568999999999988 999888866532 11122 224443211 14689999
Q ss_pred cCcCCEEEEcc
Q 023490 176 ISGSDLVLLLI 186 (281)
Q Consensus 176 l~~ADVViLav 186 (281)
++++|+|..-+
T Consensus 212 v~~aDvvyt~~ 222 (307)
T 3tpf_A 212 LKDKDVVITDT 222 (307)
T ss_dssp HTTCSEEEECC
T ss_pred hcCCCEEEecC
Confidence 99999999876
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.025 Score=55.06 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=52.6
Q ss_pred CcEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc--cC
Q 023490 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL--IS 187 (281)
Q Consensus 111 ~ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa--vP 187 (281)
+|+|-|||.|-.|.+ +|+.|++. |++|.+.|.......+..++.|+... .....+.+.++|+|++. +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEECCCCC
Confidence 489999999999996 89999999 99999888765544455667787653 22233457889999984 56
Q ss_pred C
Q 023490 188 D 188 (281)
Q Consensus 188 ~ 188 (281)
+
T Consensus 93 ~ 93 (494)
T 4hv4_A 93 A 93 (494)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.056 Score=50.96 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=53.3
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHH----HHHHCC--ceecCCCcCCHHh
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAG--FTEENGTLGDIYE 174 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~----~A~~~G--~~~~~~t~~~~~E 174 (281)
.|+| .+|++||=| +++.+++..+..+ |++|.+..++.- .-.+ .+++.| +.. ..+++|
T Consensus 152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 220 (335)
T 1dxh_A 152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL----TEDPKE 220 (335)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE----ESCHHH
T ss_pred CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 6889 999999986 9999999999998 999988876532 1112 233566 333 468999
Q ss_pred hcCcCCEEEEccC
Q 023490 175 TISGSDLVLLLIS 187 (281)
Q Consensus 175 ~l~~ADVViLavP 187 (281)
+++++|+|..-+=
T Consensus 221 av~~aDvvytd~w 233 (335)
T 1dxh_A 221 AVKGVDFVHTDVW 233 (335)
T ss_dssp HTTTCSEEEECCC
T ss_pred HhCCCCEEEeCCc
Confidence 9999999999443
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.053 Score=51.05 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=53.4
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~----~A~~~G~~~~~~t~~~~~E~l 176 (281)
.|+| .+|++||=| +++.+++..+..+ |++|.+..++.- .-.+ .+++.|...+ ...+++|++
T Consensus 152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~eav 222 (333)
T 1duv_G 152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNIT--LTEDVAKGV 222 (333)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEE--EESCHHHHH
T ss_pred CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEE--EEECHHHHh
Confidence 6788 999999975 9999999999998 999988876532 1112 2336673211 146899999
Q ss_pred CcCCEEEEccC
Q 023490 177 SGSDLVLLLIS 187 (281)
Q Consensus 177 ~~ADVViLavP 187 (281)
+++|+|..-+=
T Consensus 223 ~~aDvvytd~w 233 (333)
T 1duv_G 223 EGADFIYTDVW 233 (333)
T ss_dssp TTCSEEEECCS
T ss_pred CCCCEEEeCCc
Confidence 99999999443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.082 Score=48.72 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=63.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcC-----cC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETIS-----GS 179 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l~-----~A 179 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|....-... .++.+.+. ..
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDIN-GEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 57 8999999999999999999998 98 67665544 4456778888864210001 13333332 58
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCC-cEEEEe
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpg-aILi~a 211 (281)
|+|+-++... ..+++.+..++++ -.+++.
T Consensus 267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SEEEESSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCCEEEEE
Confidence 9999998753 2466777788887 665544
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.085 Score=48.57 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=63.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcC-----cC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETIS-----GS 179 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l~-----~A 179 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|....-... .++.+.+. ..
T Consensus 192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLN-PDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-GGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCC-HHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 98 66655544 4456778888863210001 13444333 58
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCC-cEEEEe
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpg-aILi~a 211 (281)
|+|+-++... ..++..+..++++ -.++..
T Consensus 264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 264 DFSLECVGNV---GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCcEEEEE
Confidence 9999998753 2456677788887 655543
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.028 Score=51.82 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=65.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhc----CcCC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD 180 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l----~~AD 180 (281)
.++| ++|.|+|.|.+|...++.++.. |.+|++.++... +..+.+++.|....+ .. +..+.+ ...|
T Consensus 178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence 4559 9999999999999999999998 998887777641 334667777865311 11 222222 4589
Q ss_pred EEEEccCChhHHHHH-HHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~vl-~ei~~~mKpgaILi~a 211 (281)
+|+-++.... .+ ++.++.|+++..++..
T Consensus 249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 249 VIIDATGADV---NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEECCCCCT---HHHHHHGGGEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHHhcCCEEEEE
Confidence 9999998643 34 6667788887665544
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.075 Score=48.06 Aligned_cols=95 Identities=17% Similarity=0.111 Sum_probs=65.6
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
-+| .+|.|+|.|.+|...++.++.. |..+++..+..++..+.+++.|.... +..-.+..+.+ ...|
T Consensus 159 ~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 159 CEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp CTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred CCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 468 9999999999999999999998 98765555554555778899996421 11112333332 3478
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.... .++..+..++++..+++.+
T Consensus 232 ~v~d~~G~~~---~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 232 LILETAGVPQ---TVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp EEEECSCSHH---HHHHHHHHCCTTCEEEECC
T ss_pred cccccccccc---hhhhhhheecCCeEEEEEe
Confidence 8888886432 4566667788888776544
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.57 E-value=0.086 Score=48.55 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=63.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~--~~~~E~l~-----~A 179 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|.... +... .++.+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDIN-KDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-GGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 98 67665554 445677888886321 1000 13333332 58
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCC-cEEEEe
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpg-aILi~a 211 (281)
|+|+-++.... .+++.+..++++ -.+++.
T Consensus 263 D~vid~~g~~~---~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 263 DFSFEVIGRLD---TMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SEEEECSCCHH---HHHHHHHHBCTTTCEEEEC
T ss_pred cEEEECCCCHH---HHHHHHHHhhcCCcEEEEe
Confidence 99999987633 456667778887 665544
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.019 Score=53.63 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=50.8
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH--HHHCC--ceecCCCcCCHHhhcCcCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARAAG--FTEENGTLGDIYETISGSD 180 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~--A~~~G--~~~~~~t~~~~~E~l~~AD 180 (281)
..|+| .+|++|| .+++..+++..+..+ |++|.+..+++-...+. +++.| +.. ..+++|+++++|
T Consensus 150 g~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~g~~v~~----~~d~~eav~~aD 218 (309)
T 4f2g_A 150 GPIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKLVDAESAPFYQV----FDDPNEACKGAD 218 (309)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGGSCGGGGGGEEE----CSSHHHHTTTCS
T ss_pred CCCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHcCCeEEE----EcCHHHHhcCCC
Confidence 35899 9999999 568999999999998 99988876543111000 12223 332 568999999999
Q ss_pred EEEEcc
Q 023490 181 LVLLLI 186 (281)
Q Consensus 181 VViLav 186 (281)
+|..-+
T Consensus 219 vvyt~~ 224 (309)
T 4f2g_A 219 LVTTDV 224 (309)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999854
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.046 Score=45.88 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=47.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC----HHhhcCcCCEEEEcc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~----~~E~l~~ADVViLav 186 (281)
|+|.|+| .|.+|+.+++.|.+. |++|++..|...+..+. .++..-.....+ +.+++++.|+||.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 5799999 899999999999998 99998888874321110 222211112233 456788999999988
Q ss_pred CCh
Q 023490 187 SDA 189 (281)
Q Consensus 187 P~~ 189 (281)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 653
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.062 Score=52.24 Aligned_cols=74 Identities=20% Similarity=0.093 Sum_probs=45.7
Q ss_pred cEEEEEccCch-HHHHHHHHHh--hhhhccC-CcEEEEEecCC--cccHH---HHH----HCCceecCCCcCCHHhhcCc
Q 023490 112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKS-DIVVKVGLRKG--SRSFA---EAR----AAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 112 ktIGIIG~G~m-G~AiA~~Lra--~~~~~~~-G~~Viig~r~~--~~s~~---~A~----~~G~~~~~~t~~~~~E~l~~ 178 (281)
+||+|||.|+. |.+++..|.. . +. +.+|.++++.. ++... .+. ..+....-....|..+++++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~----~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC----CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 68999999998 8887766665 2 12 23677777764 32111 111 12211100112577899999
Q ss_pred CCEEEEccCCh
Q 023490 179 SDLVLLLISDA 189 (281)
Q Consensus 179 ADVViLavP~~ 189 (281)
||+|++++|..
T Consensus 84 AD~VVitagv~ 94 (450)
T 1s6y_A 84 ADFVTTQFRVG 94 (450)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEcCCCC
Confidence 99999999963
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.045 Score=47.97 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=49.9
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCccc--HHHH------HHCCceecCCCcCC---HHhhcCc
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISG 178 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s--~~~A------~~~G~~~~~~t~~~---~~E~l~~ 178 (281)
+|+|.|+|. |.+|+++++.|.+. |++|++..|..... .+.+ ...|+....+.+.+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 77 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN 77 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcC
Confidence 388999995 99999999999998 99988877764321 1111 23454322122333 4567889
Q ss_pred CCEEEEccCCh
Q 023490 179 SDLVLLLISDA 189 (281)
Q Consensus 179 ADVViLavP~~ 189 (281)
+|+||.+....
T Consensus 78 ~d~vi~~a~~~ 88 (308)
T 1qyc_A 78 VDVVISTVGSL 88 (308)
T ss_dssp CSEEEECCCGG
T ss_pred CCEEEECCcch
Confidence 99999988753
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.022 Score=53.96 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=56.0
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC--cccHHHH---HHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~--~~s~~~A---~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|.+||||| .|..|+.+.+.|... ...++....... .+..... .......+ ..+.++..+++|+||+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-----P~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~ 84 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-----PEAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFT 84 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-----TTEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEE
Confidence 58999998 799999999999876 123544333221 1222211 00122211 1245555588999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|+|.....++..+ + .|..||+.++
T Consensus 85 alp~~~s~~~~~~----~-~g~~VIDlSs 108 (351)
T 1vkn_A 85 ALPAGASYDLVRE----L-KGVKIIDLGA 108 (351)
T ss_dssp CCSTTHHHHHHTT----C-CSCEEEESSS
T ss_pred CCCcHHHHHHHHH----h-CCCEEEECCh
Confidence 9998766555443 3 6888998766
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.089 Score=48.34 Aligned_cols=92 Identities=18% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcC-----cC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETIS-----GS 179 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l~-----~A 179 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|....-... .++.+.++ ..
T Consensus 190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDIN-KDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSC-GGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCC-HHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 98 66655544 4456777888863210000 13333332 58
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCC-cEEEEe
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpg-aILi~a 211 (281)
|+|+-++.... .+++.+..++++ -.++..
T Consensus 262 D~vid~~g~~~---~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 262 DYSFECIGNVK---VMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SEEEECSCCHH---HHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCcHH---HHHHHHHhhccCCcEEEEE
Confidence 99999987532 456677788887 665544
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.03 Score=51.10 Aligned_cols=133 Identities=18% Similarity=0.160 Sum_probs=79.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC------cCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~------~AD 180 (281)
+| ++|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|.... +....++.+.+. ..|
T Consensus 167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEPS-DFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 78 9999999999999999999998 98 88766655 344566777775311 111123333332 589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchh-hhhhcccCCCCCceEEEeccCCCC---hhhHHhhhhCc
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIAVCPKGMG---PSVRRLYVQGK 252 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~-~l~~~~~~~~~~i~VIrvmPntpg---~~vr~~y~~g~ 252 (281)
+|+-++.... .+++.++.++++..+++.+...-. .+......+.++++++...-.... ..+-+++.+|+
T Consensus 239 ~vid~~g~~~---~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~ 311 (348)
T 2d8a_A 239 VFLEFSGAPK---ALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGK 311 (348)
T ss_dssp EEEECSCCHH---HHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEECCCCCSHHHHHHHHHHHHHTC
T ss_pred EEEECCCCHH---HHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCCcEEEEecCCCcHHHHHHHHHHHHcCC
Confidence 9999998532 455666777887766554332100 010000122456677665432211 34556777774
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.047 Score=44.60 Aligned_cols=70 Identities=23% Similarity=0.307 Sum_probs=47.2
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViLavP 187 (281)
|+|.|+|. |.+|+++++.|.+. |++|++..|...+... ....++........ ++.++++++|+|+.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhccc-ccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 79999996 99999999999998 9999888876432110 00112221111122 34577889999998876
Q ss_pred C
Q 023490 188 D 188 (281)
Q Consensus 188 ~ 188 (281)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.012 Score=55.56 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=50.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHC-CceecCCCcCCHHhhcCc-----------
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG----------- 178 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~-G~~~~~~t~~~~~E~l~~----------- 178 (281)
.+|||||+|.||+.+++.++.. . .+.+++|+ +++++ ... .+.++ |+.. +.+.++++++
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~-~-~g~~~~vvaV~d~~-~~~--~~~~~~gi~~----~~~~~e~l~~~~~~~~did~v 75 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAM-K-STITYNLVLLAEAE-RSL--ISKDFSPLNV----GSDWKAALAASTTKTLPLDDL 75 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-C-CSSEEEEEEEECSS-BEE--ECSSCSCCSC----TTCHHHHHHTCCCBCCCHHHH
T ss_pred EEEEEEecCHHHHHHHHHHHhc-C-CCCCEEEEEEEECC-hhh--hccccCCCCc----cccHHHHHhcccCCCCCHHHH
Confidence 5799999999999999999875 0 01124543 33322 110 11111 3321 1234444432
Q ss_pred ---------CCEEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 179 ---------SDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 179 ---------ADVViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
.|+|+.|+|...+...+. ..|+.|..|+.
T Consensus 76 ~e~~~~~~~~DvVV~~t~~~~~a~~~~---~AL~aGkhVVt 113 (358)
T 1ebf_A 76 IAHLKTSPKPVILVDNTSSAYIAGFYT---KFVENGISIAT 113 (358)
T ss_dssp HHHHTTCSSCEEEEECSCCHHHHTTHH---HHHHTTCEEEC
T ss_pred HHHhhhccCCcEEEEcCCChHHHHHHH---HHHHCCCeEEe
Confidence 389999999876554442 45667887765
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=95.43 E-value=0.037 Score=51.90 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=53.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC--CcccHHHHH----HCCc-----ee--cCC----------C
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR----AAGF-----TE--ENG----------T 168 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~--~~~s~~~A~----~~G~-----~~--~~~----------t 168 (281)
.+|||+|+|.||+.+++.|... .+++|+...+. +.+...... ..|. .. +++ .
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4899999999999999998764 14666555542 221111111 1111 00 000 0
Q ss_pred c--CCHHhhc---CcCCEEEEccCChhHHHHHHHHHhcCCCCc--EEEEeCC
Q 023490 169 L--GDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (281)
Q Consensus 169 ~--~~~~E~l---~~ADVViLavP~~~~~~vl~ei~~~mKpga--ILi~aaG 213 (281)
. .+++++- .++|+|+.++|.....+...+.+ +.|+ +|+...+
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l---~aGak~VVIs~pa 127 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHL---KGGAKKVVISAPS 127 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEESSCC
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHHH---HcCCCEEEEecCC
Confidence 1 1444431 47999999999977766655443 3466 6665443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.059 Score=47.74 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=50.4
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH---HHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~---A~~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
++|.|+| .|.+|+++++.|.+. |++|++..|......+. ....|+....+.+.+ +.++++++|+||.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 5899999 599999999999998 99998888875322221 123454321122333 5578899999999
Q ss_pred ccCCh
Q 023490 185 LISDA 189 (281)
Q Consensus 185 avP~~ 189 (281)
+....
T Consensus 86 ~a~~~ 90 (318)
T 2r6j_A 86 ALAFP 90 (318)
T ss_dssp CCCGG
T ss_pred CCchh
Confidence 88753
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.063 Score=49.60 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=64.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhcC-----cC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETIS-----GS 179 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t---~~~~~E~l~-----~A 179 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++.. +..+.+++.|....-.. ..++.+.++ ..
T Consensus 193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~Vi~~~~~~-~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRIIGIDIDS-KKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHH------TCSCEEEECSCT-THHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCH-HHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 57 8999999999999999999998 98 676665443 45678888886421000 123333332 48
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCC-cEEEEeC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpg-aILi~aa 212 (281)
|+|+-++.... .++..+..++++ -.+++.+
T Consensus 265 D~vid~~g~~~---~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 265 DYSFECIGNVS---VMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SEEEECSCCHH---HHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCCHH---HHHHHHHHhhccCCEEEEEc
Confidence 99999988643 466677788885 5555443
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.062 Score=44.99 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=48.5
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEcc
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLav 186 (281)
||+|.|+| .|.+|..+++.|.+. |++|++..|...+.... ..++........+ +.++++++|+|+.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 58999999 699999999999999 99998888764321110 0222211111223 557889999999987
Q ss_pred CCh
Q 023490 187 SDA 189 (281)
Q Consensus 187 P~~ 189 (281)
...
T Consensus 76 ~~~ 78 (227)
T 3dhn_A 76 NPG 78 (227)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.042 Score=50.62 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=44.2
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCC---cc-cHHHH--HHCC---ceecCCCcCCHHh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG---SR-SFAEA--RAAG---FTEENGTLGDIYE 174 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~---~~-s~~~A--~~~G---~~~~~~t~~~~~E 174 (281)
+||.|||. |.+|.+++..|... |+ +|.+.++.. .+ ....+ ...+ +...-....+..+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~ 79 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMT 79 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHH
Confidence 79999997 99999999999877 64 676665541 11 11111 1111 1100001247789
Q ss_pred hcCcCCEEEEccC
Q 023490 175 TISGSDLVLLLIS 187 (281)
Q Consensus 175 ~l~~ADVViLavP 187 (281)
++++||+|+++..
T Consensus 80 al~~aD~Vi~~ag 92 (329)
T 1b8p_A 80 AFKDADVALLVGA 92 (329)
T ss_dssp HTTTCSEEEECCC
T ss_pred HhCCCCEEEEeCC
Confidence 9999999998754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.054 Score=49.17 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=65.1
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC----cCCEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLV 182 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~----~ADVV 182 (281)
-+| .+|.|+|.|.+|...++.++.. |.+|+..++. ++..+.+++.|.... +....+..+.+. ..|+|
T Consensus 165 ~~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 165 RPG-QWVVISGIGGLGHVAVQYARAM------GLRVAAVDID-DAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp CTT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEE
Confidence 367 9999999999999999999998 9988766655 345677888885321 111123333332 68999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+.++... ..++..+..++++-.+++.
T Consensus 237 id~~g~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 237 LVTAVSP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EEeCCCH---HHHHHHHHHhccCCEEEEe
Confidence 9988643 3566667778887766654
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.039 Score=52.19 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=52.1
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHHH----HHHCC--ceecCCCcCCHHhh
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE----ARAAG--FTEENGTLGDIYET 175 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~~----A~~~G--~~~~~~t~~~~~E~ 175 (281)
.|+| .||++|| .+++..+++..+..+ |++|.+..+++-. -.+. +++.| +.. ..+++|+
T Consensus 176 ~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~----~~d~~ea 244 (340)
T 4ep1_A 176 TFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEI----LHNPELA 244 (340)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEE----ESCHHHH
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----ECCHHHH
Confidence 5899 9999999 468999999999988 9999888665321 1112 33556 333 4689999
Q ss_pred cCcCCEEEEcc
Q 023490 176 ISGSDLVLLLI 186 (281)
Q Consensus 176 l~~ADVViLav 186 (281)
++++|+|..-+
T Consensus 245 v~~aDVvyt~~ 255 (340)
T 4ep1_A 245 VNEADFIYTDV 255 (340)
T ss_dssp HTTCSEEEECC
T ss_pred hCCCCEEEecC
Confidence 99999999855
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.083 Score=51.02 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=56.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| +++.|||.|..|.+-++.|.+. |.+|.+.+.......+...+ .++....+.+ .++.+.++|+|+.
T Consensus 8 ~~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~--~~~~l~~~~lVi~ 78 (457)
T 1pjq_A 8 CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGPF--DETLLDSCWLAIA 78 (457)
T ss_dssp ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESSC--CGGGGTTCSEEEE
T ss_pred EECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEECCC--CccccCCccEEEE
Confidence 57999 9999999999999999999999 99998887654332222222 3343221111 1345779999999
Q ss_pred ccCChhHH-HHHH
Q 023490 185 LISDAAQA-DNYE 196 (281)
Q Consensus 185 avP~~~~~-~vl~ 196 (281)
++.+.... .++.
T Consensus 79 at~~~~~n~~i~~ 91 (457)
T 1pjq_A 79 ATDDDTVNQRVSD 91 (457)
T ss_dssp CCSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 88776533 3443
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.038 Score=51.47 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=62.4
Q ss_pred cccCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
..|+| .+|++||=| ++..+++..+..+ |++|.+..++.-.. + ..+.|. ..+++|+++++|+|
T Consensus 143 g~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~-~~~~g~------~~d~~eav~~aDvv 207 (304)
T 3r7f_A 143 NTFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-E-ENTFGT------YVSMDEAVESSDVV 207 (304)
T ss_dssp SCCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-T-TCSSCE------ECCHHHHHHHCSEE
T ss_pred CCCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-c-hhhcCc------cCCHHHHhCCCCEE
Confidence 35899 999999975 6999999999998 99988876653221 1 112332 35899999999999
Q ss_pred EEccCC----------hhHHHHH--H-HHHhcCCCCcEEE
Q 023490 183 LLLISD----------AAQADNY--E-KIFSCMKPNSILG 209 (281)
Q Consensus 183 iLavP~----------~~~~~vl--~-ei~~~mKpgaILi 209 (281)
..-.-. .....-| + ++++.+||++++.
T Consensus 208 yt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~m 247 (304)
T 3r7f_A 208 MLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIM 247 (304)
T ss_dssp EECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEE
T ss_pred EeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEE
Confidence 985321 1112222 3 6778888888766
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.049 Score=53.39 Aligned_cols=92 Identities=12% Similarity=0.224 Sum_probs=69.1
Q ss_pred ccCCCcEEEEEccC----------chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G----------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l 176 (281)
.++| ++|+|.|+- +-...+++.|.+. |.+|.+++..-.. . ..+.. ..+++|++
T Consensus 350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~~~~-~-----~~~~~----~~~~~~~~ 412 (478)
T 3g79_A 350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPYVVN-Y-----PGVEI----SDNLEEVV 412 (478)
T ss_dssp CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSSCCC-B-----TTBCE----ESCHHHHH
T ss_pred CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCCccc-c-----cCcce----ecCHHHHH
Confidence 5799 999999963 3467889999998 9999988876431 0 11221 34889999
Q ss_pred CcCCEEEEccCChhHHH-HHHHHHhcCC-CCcEEEEeCCcc
Q 023490 177 SGSDLVLLLISDAAQAD-NYEKIFSCMK-PNSILGLSHGFL 215 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~-vl~ei~~~mK-pgaILi~aaG~~ 215 (281)
+++|+|+++|.-.+... -++++...|+ +..+|+|..++.
T Consensus 413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~~ 453 (478)
T 3g79_A 413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVI 453 (478)
T ss_dssp TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSCS
T ss_pred hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCCC
Confidence 99999999999877654 2456777787 477999988865
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.055 Score=49.35 Aligned_cols=66 Identities=27% Similarity=0.374 Sum_probs=41.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc--EEEEEec--CCcccHHHHHHC--------CceecCCCcCCHHhhcCc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLR--KGSRSFAEARAA--------GFTEENGTLGDIYETISG 178 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r--~~~~s~~~A~~~--------G~~~~~~t~~~~~E~l~~ 178 (281)
+||+||| .|.+|.+++..|... ++ ++.+.++ ...+....+.+. ..... ..+ .+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~---~~~-~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR---QGG-YEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE---ECC-GGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEE---eCC-HHHhCC
Confidence 5899999 999999999998876 64 5666665 221111111110 11110 123 678999
Q ss_pred CCEEEEccC
Q 023490 179 SDLVLLLIS 187 (281)
Q Consensus 179 ADVViLavP 187 (281)
+|+|+++..
T Consensus 71 aDvVi~~ag 79 (303)
T 1o6z_A 71 SDVVVITAG 79 (303)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 999999875
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.047 Score=50.57 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=64.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC--------c
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS--------G 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~--------~ 178 (281)
+| .+|.|+|.|.+|...++.++.. |. +|++.++. ++..+.+++.|.... +....+..+.+. .
T Consensus 182 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 182 AG-STVAILGGGVIGLLTVQLARLA------GATTVILSTRQ-ATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-HHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCC
Confidence 57 9999999999999999999998 98 66555444 445677888886421 111234444443 4
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
.|+|+-++.... .+++.+..++++-.+++.+
T Consensus 254 ~Dvvid~~G~~~---~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 254 VDVVIECAGVAE---TVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp EEEEEECSCCHH---HHHHHHHHEEEEEEEEECS
T ss_pred CCEEEECCCCHH---HHHHHHHHhccCCEEEEEe
Confidence 899999987532 4566667788877766543
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.043 Score=51.07 Aligned_cols=94 Identities=17% Similarity=0.183 Sum_probs=64.6
Q ss_pred cccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHH----HHHHCC--ceecCCCcCCHH
Q 023490 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFA----EARAAG--FTEENGTLGDIY 173 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~----~A~~~G--~~~~~~t~~~~~ 173 (281)
..|+| .+|++||=| ++..+++..+..+ |++|.+..++.-. -.+ .+++.| +.. ..+++
T Consensus 144 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~ 212 (307)
T 2i6u_A 144 GALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAH 212 (307)
T ss_dssp SCCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred CCcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHH
Confidence 46899 999999975 9999999999998 9999888766421 112 223556 433 56899
Q ss_pred hhcCcCCEEEEccCC---------h--hHHH--HHH-HHHhcCCCCcEEEE
Q 023490 174 ETISGSDLVLLLISD---------A--AQAD--NYE-KIFSCMKPNSILGL 210 (281)
Q Consensus 174 E~l~~ADVViLavP~---------~--~~~~--vl~-ei~~~mKpgaILi~ 210 (281)
|+++++|+|..-+=. . .... .++ ++++..||++++.-
T Consensus 213 eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH 263 (307)
T 2i6u_A 213 AAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLH 263 (307)
T ss_dssp HHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEE
T ss_pred HHhcCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEEC
Confidence 999999999994421 0 0111 122 56667777777653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.047 Score=45.37 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=62.0
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh----c--CcCC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET----I--SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~----l--~~AD 180 (281)
+| +++.|+| .|.+|.++++.++.. |.+|++.++.. +..+.+++.|.... +....+..+. . ...|
T Consensus 38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGSD-AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 67 9999999 699999999999998 99987777653 33445566664210 1111122222 2 2489
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+|+-++.. ..+++.++.|+++..++..+.
T Consensus 110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 110 VVLNSLAG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred EEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence 99988753 356677788888877765544
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.053 Score=53.09 Aligned_cols=76 Identities=20% Similarity=0.067 Sum_probs=44.4
Q ss_pred cEEEEEccCch-HHHHHHHHHhhhhhccC-CcEEEEEecCCcccHH---HHH----HCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFA---EAR----AAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~m-G~AiA~~Lra~~~~~~~-G~~Viig~r~~~~s~~---~A~----~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
+||+|||.|.. +.++|..|... ..+. +.+|.++++..++... ... ..+....-....|.++++++||+|
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~--~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V 106 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDH--LEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 106 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHT--TTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhC--CCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence 59999999997 66666555442 0022 3468778776432111 011 111110000134778999999999
Q ss_pred EEccCCh
Q 023490 183 LLLISDA 189 (281)
Q Consensus 183 iLavP~~ 189 (281)
++++|..
T Consensus 107 Viaag~~ 113 (472)
T 1u8x_X 107 MAHIRVG 113 (472)
T ss_dssp EECCCTT
T ss_pred EEcCCCc
Confidence 9999874
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.043 Score=53.61 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=58.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC-CHH-hhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIY-ETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~-~~~-E~l~~ADVViLavP~~ 189 (281)
+++.|||+|.+|..+|+.|.+. |++|++.+...+...+ .. -+...|.+-. .++ .-++++|.+++++++.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~~~~-~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESPVCN-DH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCSSCC-SS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHHHhh-cC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 6799999999999999999998 9999888876543221 11 2222121111 122 3489999999999987
Q ss_pred hHHHHHHHHHhcCCCC-cEEE
Q 023490 190 AQADNYEKIFSCMKPN-SILG 209 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpg-aILi 209 (281)
+..-++-.....+.+. .+|.
T Consensus 420 ~~ni~~~~~ak~l~~~~~iia 440 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVA 440 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEE
Confidence 5443444555566666 3444
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.1 Score=46.00 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=49.1
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH------CCcee--c-C-CCcCCHHh
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------AGFTE--E-N-GTLGDIYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~------~G~~~--~-~-~t~~~~~E 174 (281)
..++| |+|.|.|. |-+|..+++.|.+. |++|++..|........... .++.. . | ....++++
T Consensus 7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 34678 99999996 99999999999998 99998887763321111111 12221 0 1 01223556
Q ss_pred hcCcCCEEEEccC
Q 023490 175 TISGSDLVLLLIS 187 (281)
Q Consensus 175 ~l~~ADVViLavP 187 (281)
++++.|+||-+..
T Consensus 80 ~~~~~d~vih~A~ 92 (342)
T 1y1p_A 80 VIKGAAGVAHIAS 92 (342)
T ss_dssp TTTTCSEEEECCC
T ss_pred HHcCCCEEEEeCC
Confidence 7778999998764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.12 Score=47.12 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=62.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CC-HHhh---c-----C
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GD-IYET---I-----S 177 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~-~~-~~E~---l-----~ 177 (281)
+| .+|.|+|.|.+|...++.++.. |.+|++.++. ++..+.+++.|.... +... .+ .+++ . .
T Consensus 168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTARS-PRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEcCC-HHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 67 9999999999999999999998 9987655544 445567788886310 1010 12 2222 2 3
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
..|+|+-++.... .+++.+..++++-.++..
T Consensus 240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLV 270 (352)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 5999999987643 455666778887766654
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.041 Score=51.08 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=54.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhh--hccCCcEEE-EEecCCcccHH------HHH---HCCceecCCCcC---CHHhhc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVK-VGLRKGSRSFA------EAR---AAGFTEENGTLG---DIYETI 176 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~--~~~~G~~Vi-ig~r~~~~s~~------~A~---~~G~~~~~~t~~---~~~E~l 176 (281)
.+|||||+|.||+.+++.+...-. ..|.+++|. +++++..+..+ .+. ..++.. .+. +.++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence 579999999999999999977510 011124543 44544322111 011 122210 123 778877
Q ss_pred -CcCCEEEEccCCh----hHHHHHHHHHhcCCCCcEEEEe
Q 023490 177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 177 -~~ADVViLavP~~----~~~~vl~ei~~~mKpgaILi~a 211 (281)
.+.|+|+.++|.. .+.+++.+ .|+.|..|+.+
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~~---AL~aGkhVvta 120 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYKE---TFENGKDVVTA 120 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHHH---HHHTTCEEEEC
T ss_pred CCCCCEEEECCCCCCccchHHHHHHH---HHHCCCeEEec
Confidence 4689999999985 33334443 34557776653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.031 Score=52.17 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=64.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCH-HhhcC------cCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETIS------GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~-~E~l~------~AD 180 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. .+..+.+++.|...-+....+. .+.+. ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVIVGDQN-PERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEESC-HHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCC-HHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 67 9999999999999999999998 98 77766654 3445677888863211111122 22221 589
Q ss_pred EEEEccCChh-----------HHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~-----------~~~vl~ei~~~mKpgaILi~aa 212 (281)
+||-++.... ....+++.+..++++-.+++.+
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 9999997542 1235667777888877665443
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.055 Score=52.35 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=50.6
Q ss_pred cCCCcEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+..+|+|.|||+|..|.+ +|+.|++. |++|.+.+.......+..++.|+....+. +. +.++.+|+|++.
T Consensus 16 ~~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g~--~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 16 MRRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFNH--RP-ENVRDASVVVVS 85 (491)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESSC--CG-GGGTTCSEEEEC
T ss_pred cccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECCC--CH-HHcCCCCEEEEC
Confidence 444589999999999997 99999998 99998887765433344556787653221 23 446789999984
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.16 Score=47.50 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=62.9
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~A 179 (281)
-+| .+|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|.... +....++.+.+ ...
T Consensus 212 ~~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~ 283 (404)
T 3ip1_A 212 RPG-DNVVILGGGPIGLAAVAILKHA------GASKVILSEPS-EVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGA 283 (404)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCC
Confidence 367 8999999999999999999998 98 66655444 455677888886421 11112333322 259
Q ss_pred CEEEEccCChh-HHH-HHHHHHhcCCCCcEEEEeC
Q 023490 180 DLVLLLISDAA-QAD-NYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 180 DVViLavP~~~-~~~-vl~ei~~~mKpgaILi~aa 212 (281)
|+|+-++.... ... .++-+...++++-.+++.+
T Consensus 284 D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 284 KLFLEATGVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp SEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 99999998763 222 2222324448877766554
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.012 Score=54.91 Aligned_cols=67 Identities=22% Similarity=0.179 Sum_probs=44.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcCC---HHhhcCcCCEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~~---~~E~l~~ADVVi 183 (281)
+.| ++|+|||.|.+|..+++.+++. |++|++.+...... ...+ ..+.. ....| +.++++++|+|+
T Consensus 10 ~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~~~~~p~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvi~ 78 (377)
T 3orq_A 10 KFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDPSEDCPCRYVA--HEFIQ--AKYDDEKALNQLGQKCDVIT 78 (377)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCTTCTTGGGS--SEEEE--CCTTCHHHHHHHHHHCSEEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCChhhhhC--CEEEE--CCCCCHHHHHHHHHhCCcce
Confidence 567 9999999999999999999999 99988887543211 1111 11111 01222 456778899886
Q ss_pred Ec
Q 023490 184 LL 185 (281)
Q Consensus 184 La 185 (281)
.-
T Consensus 79 ~~ 80 (377)
T 3orq_A 79 YE 80 (377)
T ss_dssp ES
T ss_pred ec
Confidence 53
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.072 Score=49.32 Aligned_cols=72 Identities=21% Similarity=0.124 Sum_probs=43.7
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH--CC-c--eecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~--~G-~--~~~~~t~~~~~E~l~~ADVViLa 185 (281)
|||+||| .|.+|.+++..|.... ++..++.+.+... .....+.+ .. . ........+..+.+++||+|+++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ 76 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEe
Confidence 6899999 8999999999986530 1134677776653 22222221 11 1 11000002457889999999998
Q ss_pred cC
Q 023490 186 IS 187 (281)
Q Consensus 186 vP 187 (281)
..
T Consensus 77 ag 78 (312)
T 3hhp_A 77 AG 78 (312)
T ss_dssp CS
T ss_pred CC
Confidence 74
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.081 Score=46.26 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=49.4
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC-c-----ccHHH---HHHCCceecCCCcCC---HHhhcCc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S-----RSFAE---ARAAGFTEENGTLGD---IYETISG 178 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~-~-----~s~~~---A~~~G~~~~~~t~~~---~~E~l~~ 178 (281)
|+|.|+|. |.+|+++++.|.+. |++|++..|.. . ...+. ....|+........+ +.+++++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred cEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence 88999995 99999999999998 99998888764 1 11111 123454321112333 4578899
Q ss_pred CCEEEEccCCh
Q 023490 179 SDLVLLLISDA 189 (281)
Q Consensus 179 ADVViLavP~~ 189 (281)
+|+||.+....
T Consensus 77 ~d~vi~~a~~~ 87 (307)
T 2gas_A 77 VDIVICAAGRL 87 (307)
T ss_dssp CSEEEECSSSS
T ss_pred CCEEEECCccc
Confidence 99999988753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.075 Score=48.70 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=62.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCC---cCCHHhhc-----Cc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t---~~~~~E~l-----~~ 178 (281)
+| .+|.|+|.|.+|...++.++.. |. +|++.++. ++..+.+++.|.... +.. ..+..+.+ ..
T Consensus 171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLS-ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 57 9999999999999999999998 98 77666554 344567888886320 000 00111112 35
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.|+|+-++.... .+++.+..++++-.++..
T Consensus 243 ~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 243 PEVTIECTGAEA---SIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 899999987542 455666778887766654
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.076 Score=46.99 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=50.0
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC-c----ccHHH---HHHCCceecCCCcCC---HHhhcCc
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLGD---IYETISG 178 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~-~----~s~~~---A~~~G~~~~~~t~~~---~~E~l~~ 178 (281)
+|+|.|+| .|.+|.++++.|.+. |++|++..|.. . ...+. ....++....+.+.+ +.+++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~ 77 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQ 77 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcC
Confidence 38899999 599999999999998 99998888874 1 11111 123454321122333 5578899
Q ss_pred CCEEEEccCCh
Q 023490 179 SDLVLLLISDA 189 (281)
Q Consensus 179 ADVViLavP~~ 189 (281)
+|+||.+....
T Consensus 78 ~d~vi~~a~~~ 88 (321)
T 3c1o_A 78 VDIVISALPFP 88 (321)
T ss_dssp CSEEEECCCGG
T ss_pred CCEEEECCCcc
Confidence 99999988753
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.062 Score=50.43 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=52.1
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCC--ceecCCCcCCHHh
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAG--FTEENGTLGDIYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G--~~~~~~t~~~~~E 174 (281)
..|+| .||++|| .+++..+++..+... |++|.+..++.- .-.+. +++.| +.. ..+++|
T Consensus 153 g~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~----~~d~~e 221 (323)
T 3gd5_A 153 GRLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQI----LRDPFE 221 (323)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CCCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEE----ECCHHH
Confidence 35899 9999999 578999999999888 999888866532 11122 23345 333 568999
Q ss_pred hcCcCCEEEEcc
Q 023490 175 TISGSDLVLLLI 186 (281)
Q Consensus 175 ~l~~ADVViLav 186 (281)
+++++|+|..-+
T Consensus 222 av~~aDvvyt~~ 233 (323)
T 3gd5_A 222 AARGAHILYTDV 233 (323)
T ss_dssp HHTTCSEEEECC
T ss_pred HhcCCCEEEEec
Confidence 999999998865
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.11 Score=50.13 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=70.0
Q ss_pred cccCCCcEEEEEccC----------chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-------------Cc
Q 023490 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GF 162 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G----------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-------------G~ 162 (281)
..++| ++|+|.|+- +-...+++.|.+. |.+|.+++..-.. .+..... ++
T Consensus 325 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~ 396 (467)
T 2q3e_A 325 NTVTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPKVPR-EQIVVDLSHPGVSEDDQVSRLV 396 (467)
T ss_dssp TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCH-HHHHHHHCC------CHHHHHE
T ss_pred cccCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCccCH-HHHhhhhccccccccccccCce
Confidence 35889 999999985 3678889999988 9999988875321 1110111 23
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCChhHHHH-HHHHHhcCCCCcEEEEeCCcc
Q 023490 163 TEENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 163 ~~~~~t~~~~~E~l~~ADVViLavP~~~~~~v-l~ei~~~mKpgaILi~aaG~~ 215 (281)
.. ..+.+|+++++|+|++++.-.+...+ ++++...|+...+|++..++.
T Consensus 397 ~~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~ 446 (467)
T 2q3e_A 397 TI----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVL 446 (467)
T ss_dssp EE----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCTT
T ss_pred ee----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCcC
Confidence 32 24788999999999999998776552 456777888766688888754
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.027 Score=52.04 Aligned_cols=91 Identities=21% Similarity=0.182 Sum_probs=61.2
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
+| .+|.|+|.|.+|...++.++.. |.+|++.++... ..+.+. +.|....- ...+ +.++....|+|+-
T Consensus 187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~-~~~~~~~~lGa~~v~-~~~~~~~~~~~~~~~D~vid 257 (366)
T 1yqd_A 187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTSPS-KKEEALKNFGADSFL-VSRDQEQMQAAAGTLDGIID 257 (366)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGG-GHHHHHHTSCCSEEE-ETTCHHHHHHTTTCEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHhcCCceEE-eccCHHHHHHhhCCCCEEEE
Confidence 78 9999999999999999999998 998877776543 345555 67753100 0122 2334457899999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
++..... +.+.++.|+++..++..
T Consensus 258 ~~g~~~~---~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 258 TVSAVHP---LLPLFGLLKSHGKLILV 281 (366)
T ss_dssp CCSSCCC---SHHHHHHEEEEEEEEEC
T ss_pred CCCcHHH---HHHHHHHHhcCCEEEEE
Confidence 9886431 33445567776665544
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.17 Score=44.45 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=33.9
Q ss_pred cccCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.+|+| |++-|-|.+ -||.++|+.|.+. |.+|++.+|+..
T Consensus 2 ~~l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~~ 43 (256)
T 4fs3_A 2 LNLEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKER 43 (256)
T ss_dssp CCCTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSGG
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 56899 999999974 4999999999999 999999888743
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.047 Score=51.27 Aligned_cols=73 Identities=10% Similarity=0.069 Sum_probs=53.6
Q ss_pred cccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhh
Q 023490 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYET 175 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~----~A~~~G~~~~~~t~~~~~E~ 175 (281)
..|+| .+|++||=| ++..+++..+..+ |++|.+..++.- .-.+ .+++.|...+ ...+++|+
T Consensus 163 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~ea 233 (325)
T 1vlv_A 163 GRLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEA 233 (325)
T ss_dssp SCSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHH
T ss_pred CCcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 36899 999999985 9999999999998 999988876531 1112 2335663211 14689999
Q ss_pred cCcCCEEEEccC
Q 023490 176 ISGSDLVLLLIS 187 (281)
Q Consensus 176 l~~ADVViLavP 187 (281)
++++|+|..-+=
T Consensus 234 v~~aDvvyt~~w 245 (325)
T 1vlv_A 234 LAGADVVYTDVW 245 (325)
T ss_dssp HTTCSEEEECCC
T ss_pred HccCCEEEeccc
Confidence 999999999443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.093 Score=47.73 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=63.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc----CcCCEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l----~~ADVVi 183 (281)
+| ++|.|+|.|.+|...++.++.. |.+|+..++. .+..+.+++.|.... +....+..+.+ ...|+|+
T Consensus 164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence 57 9999999999999999999998 9988766654 344566777775321 11112333322 4689999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
-++.... .+++.+..++++..++..
T Consensus 236 d~~g~~~---~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 236 VTAVSKP---AFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp ESSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred ECCCCHH---HHHHHHHHhhcCCEEEEe
Confidence 9987533 455666777887666544
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.021 Score=53.41 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=52.4
Q ss_pred cEEEEEccCchHHHHHHHHHhh---hhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~---~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
.+|||||+|.||+.+++.+... +.+.|.+++|. +++++..+ + .++.. ...+.+.++++ +.|+|+.++|
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~----~--~~~~~-~~~~~d~~~ll-~iDvVve~t~ 75 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRK----P--RAIPQ-ELLRAEPFDLL-EADLVVEAMG 75 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTS----C--CSSCG-GGEESSCCCCT-TCSEEEECCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHH----h--hccCc-ccccCCHHHHh-CCCEEEECCC
Confidence 5799999999999999998765 11112234543 44443221 1 12210 01134777888 9999999999
Q ss_pred ChhH-HHHHHHHHhcCCCCcEEEE
Q 023490 188 DAAQ-ADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 188 ~~~~-~~vl~ei~~~mKpgaILi~ 210 (281)
.... .+.+.+. |+.|..|+.
T Consensus 76 ~~~~a~~~~~~A---L~aGKhVVt 96 (332)
T 2ejw_A 76 GVEAPLRLVLPA---LEAGIPLIT 96 (332)
T ss_dssp CSHHHHHHHHHH---HHTTCCEEE
T ss_pred CcHHHHHHHHHH---HHcCCeEEE
Confidence 8643 3344443 344665554
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.074 Score=48.57 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=64.8
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc------CcCCE
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l------~~ADV 181 (281)
+| ++|.|+| .|.+|...++.++.. |.+|+.. +. .+..+.+++.|...-+ ...+..+.+ ...|+
T Consensus 150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 57 9999999 799999999999998 9987766 44 3446677787765311 122333333 36899
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
|+-++.. ..++..+..++++-.++...+.
T Consensus 220 vid~~g~----~~~~~~~~~l~~~G~iv~~g~~ 248 (343)
T 3gaz_A 220 VYDTLGG----PVLDASFSAVKRFGHVVSCLGW 248 (343)
T ss_dssp EEESSCT----HHHHHHHHHEEEEEEEEESCCC
T ss_pred EEECCCc----HHHHHHHHHHhcCCeEEEEccc
Confidence 9998885 3556666778887777665543
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.028 Score=52.01 Aligned_cols=71 Identities=13% Similarity=-0.012 Sum_probs=54.6
Q ss_pred cccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 106 ~~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
..|+| .+|++||= +++..+++..+..+ |++|.+..++.-...+ ..+.|+.. ..+++|+++++|+|
T Consensus 142 g~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvv 209 (291)
T 3d6n_B 142 GEVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVV 209 (291)
T ss_dssp SCCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEE
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEE
Confidence 46899 99999996 89999999999998 9999888765321111 12456553 56899999999999
Q ss_pred EEccCCh
Q 023490 183 LLLISDA 189 (281)
Q Consensus 183 iLavP~~ 189 (281)
.. +-.+
T Consensus 210 y~-~~~q 215 (291)
T 3d6n_B 210 IW-LRLQ 215 (291)
T ss_dssp EE-CCCC
T ss_pred EE-eCcc
Confidence 99 6653
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.063 Score=49.00 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=64.3
Q ss_pred CCCcEEEEE-ccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-----CcCCEE
Q 023490 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----SGSDLV 182 (281)
Q Consensus 109 ~G~ktIGII-G~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-----~~ADVV 182 (281)
+| ++|.|+ |.|.+|...++.++.. |.+|+..++. .+..+.+++.|....-....+..+.+ ...|+|
T Consensus 150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITTASR-NETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEECCS-HHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence 68 999999 7999999999999998 9988776654 34566777877532111112333333 248999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+-++... ..++..+..++++-.++...+
T Consensus 222 ~d~~g~~---~~~~~~~~~l~~~G~iv~~~~ 249 (346)
T 3fbg_A 222 FCTFNTD---MYYDDMIQLVKPRGHIATIVA 249 (346)
T ss_dssp EESSCHH---HHHHHHHHHEEEEEEEEESSC
T ss_pred EECCCch---HHHHHHHHHhccCCEEEEECC
Confidence 9887743 245566677888777665544
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.046 Score=50.72 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLa 185 (281)
+| .+|.|+|.|.+|...++.++.. |.+|+..++.. +..+.+++.|....- ...+ .+++....|+|+-+
T Consensus 194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~~~~-~~~~~a~~lGa~~vi-~~~~~~~~~~~~~g~Dvvid~ 264 (369)
T 1uuf_A 194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTSE-AKREAAKALGADEVV-NSRNADEMAAHLKSFDFILNT 264 (369)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSG-GGHHHHHHHTCSEEE-ETTCHHHHHTTTTCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCcEEe-ccccHHHHHHhhcCCCEEEEC
Confidence 57 9999999999999999999998 99977666553 456677788853200 0112 22333578999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+.... .+++.+..++++-.++..+
T Consensus 265 ~g~~~---~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 265 VAAPH---NLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp CSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred CCCHH---HHHHHHHHhccCCEEEEec
Confidence 88642 3455667788877665543
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.071 Score=50.86 Aligned_cols=70 Identities=11% Similarity=0.015 Sum_probs=51.3
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCccc------H----HHHHHCCceecCCCcCCHHh
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS------F----AEARAAGFTEENGTLGDIYE 174 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s------~----~~A~~~G~~~~~~t~~~~~E 174 (281)
.|+| .+|++||=+ +++.+++..+..+ |++|.+..++.-.. . +.+++.|...+ ...+++|
T Consensus 177 ~l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~e 247 (365)
T 4amu_A 177 NLKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKIL 247 (365)
T ss_dssp SCTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHHH
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHHH
Confidence 4899 999999977 8899999999888 99988876543211 1 12344553211 1468999
Q ss_pred hcCcCCEEEEc
Q 023490 175 TISGSDLVLLL 185 (281)
Q Consensus 175 ~l~~ADVViLa 185 (281)
+++++|+|..-
T Consensus 248 av~~aDVVytd 258 (365)
T 4amu_A 248 AAQDADVIYTD 258 (365)
T ss_dssp HTTTCSEEEEC
T ss_pred HhcCCCEEEec
Confidence 99999999984
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.13 Score=45.85 Aligned_cols=75 Identities=19% Similarity=0.106 Sum_probs=51.3
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH---H-------CCceecCCCcCC---H
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---A-------AGFTEENGTLGD---I 172 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~---~-------~G~~~~~~t~~~---~ 172 (281)
.+.+ |+|.|.| .|-+|..+++.|.+. |++|++..|......+... . .++....+...+ +
T Consensus 22 ~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 94 (351)
T 3ruf_A 22 IFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTC 94 (351)
T ss_dssp HHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHH
T ss_pred CCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHH
Confidence 3567 9999999 699999999999999 9999888876443222211 1 233221112233 4
Q ss_pred HhhcCcCCEEEEccCC
Q 023490 173 YETISGSDLVLLLISD 188 (281)
Q Consensus 173 ~E~l~~ADVViLavP~ 188 (281)
.++++++|+||-+...
T Consensus 95 ~~~~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 95 EQVMKGVDHVLHQAAL 110 (351)
T ss_dssp HHHTTTCSEEEECCCC
T ss_pred HHHhcCCCEEEECCcc
Confidence 5778899999987653
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.058 Score=49.62 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=62.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCCE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~-----~ADV 181 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|.... +....++.+.+. ..|+
T Consensus 190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIV-ESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESC-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCC-HHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 57 8999999999999999999998 98 56655544 445667777775310 111123333332 4899
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|+-++... ..+++.+..++++-.+++.+
T Consensus 262 vid~~g~~---~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 262 ALESTGSP---EILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEECSCCH---HHHHHHHHTEEEEEEEEECC
T ss_pred EEECCCCH---HHHHHHHHHHhcCCEEEEeC
Confidence 99998753 34566777888877666543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.14 Score=44.90 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=49.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccH-HHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~-~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLa 185 (281)
|+|.|.|. |.+|.++++.|.+. | ++|++..|...+.. +.....++....+.+.+ +.++++++|+|+.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 78999996 99999999999998 8 89988888754321 11223454321122333 45678999999998
Q ss_pred cCC
Q 023490 186 ISD 188 (281)
Q Consensus 186 vP~ 188 (281)
...
T Consensus 80 a~~ 82 (299)
T 2wm3_A 80 TNY 82 (299)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.0094 Score=57.46 Aligned_cols=79 Identities=15% Similarity=0.064 Sum_probs=59.2
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
.++.|||. |+.|..-++.+... |. +|.++++.. ...|-. + +.+.++|+||-++.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~l------Ga~~~~V~v~D~~~-------~~~g~~--------~-~~i~~aDivIn~vl 272 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKV------GIPDANILKWDIKE-------TSRGGP--------F-DEIPQADIFINCIY 272 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCGGGEEEECHHH-------HTTCSC--------C-THHHHSSEEEECCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhC------CCCcCceEEeeccc-------cccCCc--------h-hhHhhCCEEEECcC
Confidence 58999999 99999999999988 97 888886542 111222 1 34669999999999
Q ss_pred ChhH-HHHHH-HHHhcC-CCCcEEEEeC
Q 023490 188 DAAQ-ADNYE-KIFSCM-KPNSILGLSH 212 (281)
Q Consensus 188 ~~~~-~~vl~-ei~~~m-KpgaILi~aa 212 (281)
...- ..++. +.+..| ||+++|+|.+
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 6332 24565 788899 9999999763
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.064 Score=49.86 Aligned_cols=96 Identities=25% Similarity=0.285 Sum_probs=64.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhc------CcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~-~~E~l------~~AD 180 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. .+..+.+++.|...-+....+ +.+.+ ...|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLN-PARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEEcCC-HHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCC
Confidence 67 9999999999999999999998 98 56555544 445677888886421111112 23322 2589
Q ss_pred EEEEccCChh------------HHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAA------------QADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~------------~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.... ....+++.+..++++-.+++.+
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 9999987542 0125667777888877665543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.25 Score=47.76 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=64.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCH----HhhcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDI----YETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~----~E~l~~ADVViLav 186 (281)
++|-|+|.|++|..+|+.|.. +++|.+-++...+..+.+.+.. ...-+|...+. ++-+.++|+++.+|
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T 308 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT 308 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred cEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence 899999999999999999864 5788888877666556666543 21112333342 34589999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.+.+.-=+..-+...+....++....-
T Consensus 309 ~~De~Ni~~~llAk~~gv~kvIa~vn~ 335 (461)
T 4g65_A 309 NEDETNIMSAMLAKRMGAKKVMVLIQR 335 (461)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred cCcHHHHHHHHHHHHcCCccccccccc
Confidence 986643333455556666666665543
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.17 Score=49.21 Aligned_cols=94 Identities=10% Similarity=0.101 Sum_probs=68.5
Q ss_pred ccCCCcEEEEEccC----------chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-C------------Cce
Q 023490 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A------------GFT 163 (281)
Q Consensus 107 ~l~G~ktIGIIG~G----------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~------------G~~ 163 (281)
.++| ++|+|.|+- +-...+++.|.+. |.+|.+++....+ .+++ + .+.
T Consensus 325 ~~~~-~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~------g~~v~~~DP~~~~---~~~~~~~~~~~~~~~~~~~~~ 394 (478)
T 2y0c_A 325 DLTG-RTFAIWGLAFKPNTDDMREAPSRELIAELLSR------GARIAAYDPVAQE---EARRVIALDLADHPSWLERLS 394 (478)
T ss_dssp CCTT-CEEEEECCSSSSSCCCCTTCHHHHHHHHHHHT------TCEEEEECTTTHH---HHHHHHHHHTTTCHHHHTTEE
T ss_pred cCCC-CEEEEEecccCCCCCccccChHHHHHHHHHHC------CCEEEEECCCccH---HHHHhhcccccccccccccee
Confidence 6889 999999973 3567788888888 9999988876322 2211 2 233
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHHHHHhcCCCCcEEEEeCCcc
Q 023490 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 164 ~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~ei~~~mKpgaILi~aaG~~ 215 (281)
. ..+.+|+++++|+|++++.-.+... -++++...|+. .+|+|..++.
T Consensus 395 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~-~~i~D~r~~~ 442 (478)
T 2y0c_A 395 F----VDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKT-PVIFDGRNLY 442 (478)
T ss_dssp E----CSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSS-CEEEESSCCS
T ss_pred e----cCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCC-CEEEECCCCC
Confidence 2 3578899999999999999877654 34566677764 7889998864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.09 Score=47.89 Aligned_cols=93 Identities=17% Similarity=0.052 Sum_probs=64.5
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhcC-----cCC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETIS-----GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t-~~~~~E~l~-----~AD 180 (281)
+| +++.|+|. |.+|..+++.++.. |.+|++.++..+ ..+.+++.|.... +.. ..+..+.+. ..|
T Consensus 169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~~-~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGEG-KEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECSTT-HHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCHH-HHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence 57 99999998 89999999999998 999887776644 3466777775310 111 124444443 489
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++... ..+++.++.|+++..|+..+
T Consensus 241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 241 GVINVSVSE---AAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEEECSSCH---HHHHHHTTSEEEEEEEEECC
T ss_pred EEEECCCcH---HHHHHHHHHHhcCCEEEEEe
Confidence 999988753 35667778888877665443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.76 E-value=0.03 Score=50.00 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=62.8
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CCHHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~-~~~~E~l~~ADVViLa 185 (281)
+| ++|.|+|. |.+|...++.++.. |.+|+..++... ..+.+++.|.... +... .+..+.+...|+|+-
T Consensus 125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~~~-~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASRPE-KLALPLALGAEEAATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESSGG-GSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence 57 99999998 99999999999998 998877776543 4456777775320 0000 123334477999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+.. ..+...+..|+++..++..+
T Consensus 196 ~g~----~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 196 VRG----KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred CCH----HHHHHHHHhhccCCEEEEEe
Confidence 775 24566777888877665443
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.09 Score=47.32 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=50.6
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH------HHHCCceecCCCcCC---HHhhcC--cC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE------ARAAGFTEENGTLGD---IYETIS--GS 179 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~------A~~~G~~~~~~t~~~---~~E~l~--~A 179 (281)
|+|.|+|. |.+|+.+++.|.+. |++|++..|......+. ....++....+.+.+ +.++++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 79999996 99999999999998 99998888865221111 123454332222333 456788 99
Q ss_pred CEEEEccCCh
Q 023490 180 DLVLLLISDA 189 (281)
Q Consensus 180 DVViLavP~~ 189 (281)
|+||.+....
T Consensus 85 d~Vi~~a~~~ 94 (346)
T 3i6i_A 85 DIVVSTVGGE 94 (346)
T ss_dssp CEEEECCCGG
T ss_pred CEEEECCchh
Confidence 9999988763
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.037 Score=51.02 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=62.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCCE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~ADV 181 (281)
+| ++|.|+|.|.+|...++.++.. |.+|++.++.. +..+.+++.|.... +....+..+.+ ...|+
T Consensus 189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~~~~-~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTSSSR-EKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEecCc-hhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 57 8999999999999999999998 99987776553 44567788876421 11112333322 16899
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|+-++... .+++.+..++++-.+++.+
T Consensus 261 vid~~g~~----~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 261 ILEIAGGA----GLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEETTSS----CHHHHHHHEEEEEEEEEEC
T ss_pred EEECCChH----HHHHHHHHhhcCCEEEEEe
Confidence 99998843 3455566778877665443
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.15 Score=48.15 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=54.2
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEE-ecCC-cccHHHH-------------HHCCceecCCCcCCHHhh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKG-SRSFAEA-------------RAAGFTEENGTLGDIYET 175 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig-~r~~-~~s~~~A-------------~~~G~~~~~~t~~~~~E~ 175 (281)
.+||||| .|..|+.+.+.|... ...++... .++. .+..... .+.-+.. .+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~-----~~~-~~ 76 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP-----TDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE-----CCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEEe-----CCH-HH
Confidence 5899999 799999999988764 12354433 2221 1222221 1111111 122 34
Q ss_pred cCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++++|+||+|+|.....+...++. +.|+.+|+.++
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa 111 (359)
T 4dpl_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSP 111 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSS
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 689999999999987766666553 45888887554
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.15 Score=48.15 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=54.2
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEE-ecCC-cccHHHH-------------HHCCceecCCCcCCHHhh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKG-SRSFAEA-------------RAAGFTEENGTLGDIYET 175 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig-~r~~-~~s~~~A-------------~~~G~~~~~~t~~~~~E~ 175 (281)
.+||||| .|..|+.+.+.|... ...++... .++. .+..... .+.-+.. .+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-----P~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~-----~~~-~~ 76 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-----PYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP-----TDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-----SSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE-----CCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-----CCceEEEEECchhcCCChhHhcccccccccccccccceEEe-----CCH-HH
Confidence 5899999 799999999988764 12354433 2221 1222221 1111111 122 34
Q ss_pred cCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++++|+||+|+|.....+...++. +.|+.+|+.++
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa 111 (359)
T 4dpk_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSP 111 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSS
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 689999999999987766666553 45888887554
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.054 Score=51.27 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=51.3
Q ss_pred CcEEEEEc-cCchHHHHHH-HHHhhhhhccCCc---EEEEEe-cCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQ-NLRDSLAEAKSDI---VVKVGL-RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~-~Lra~~~~~~~G~---~Viig~-r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|++|||+| .|.+|+.+.+ .|... ++ .+.... +...+.........+..+ ...+.++ ++++|+||.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~------~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~--~~~~~~~-~~~~DvVf~ 71 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER------DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ--DAFDLEA-LKALDIIVT 71 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT------GGGGSEEEEEESSSTTSBCCGGGTCCCBCE--ETTCHHH-HHTCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC------CCCeEEEEEEEeCCCCCCccccCCCceEEE--ecCChHH-hcCCCEEEE
Confidence 57999999 9999999999 45433 33 333322 211111100000112210 0113344 578999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCc--EEEEeCC
Q 023490 185 LISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpga--ILi~aaG 213 (281)
|+|.....+....+.+ .|+ +||+.++
T Consensus 72 a~g~~~s~~~a~~~~~---~G~k~vVID~ss 99 (367)
T 1t4b_A 72 CQGGDYTNEIYPKLRE---SGWQGYWIDAAS 99 (367)
T ss_dssp CSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred CCCchhHHHHHHHHHH---CCCCEEEEcCCh
Confidence 9997766666665543 354 7777654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.087 Score=46.22 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=49.8
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHH------HHCCceecCCCcCC---HHhhcCcC
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEA------RAAGFTEENGTLGD---IYETISGS 179 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A------~~~G~~~~~~t~~~---~~E~l~~A 179 (281)
+|+|.|+| .|.+|+++++.|.+. |++|++..|..... .+.+ ...++....+...+ +.++++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~ 77 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQV 77 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCC
Confidence 37899999 599999999999998 99998888764211 1111 12354322222333 55788999
Q ss_pred CEEEEccCCh
Q 023490 180 DLVLLLISDA 189 (281)
Q Consensus 180 DVViLavP~~ 189 (281)
|+|+.+....
T Consensus 78 d~vi~~a~~~ 87 (313)
T 1qyd_A 78 DVVISALAGG 87 (313)
T ss_dssp SEEEECCCCS
T ss_pred CEEEECCccc
Confidence 9999987653
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.18 Score=47.38 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=44.3
Q ss_pred ccccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCC----cEEEEEecCCccc--HHHHH--HC-Cce--ecCCCcCCH
Q 023490 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS--FAEAR--AA-GFT--EENGTLGDI 172 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G----~~Viig~r~~~~s--~~~A~--~~-G~~--~~~~t~~~~ 172 (281)
+..... .||.|||. |.||++++..|.... =+| .++.+++...... .-.+. +. .+. .......+.
T Consensus 19 ~~s~~~-vKVaViGAaG~IG~~la~~la~~~---l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~ 94 (345)
T 4h7p_A 19 PGSMSA-VKVAVTGAAGQIGYALVPLIARGA---LLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADP 94 (345)
T ss_dssp ---CCC-EEEEEESTTSHHHHHHHHHHHHTT---TTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCH
T ss_pred CCCCCC-CEEEEECcCcHHHHHHHHHHHhcc---ccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCCh
Confidence 345566 79999996 999999999887640 012 1566666543211 01111 11 110 000113467
Q ss_pred HhhcCcCCEEEEcc
Q 023490 173 YETISGSDLVLLLI 186 (281)
Q Consensus 173 ~E~l~~ADVViLav 186 (281)
.+.+++||+|+++-
T Consensus 95 ~~a~~~advVvi~a 108 (345)
T 4h7p_A 95 RVAFDGVAIAIMCG 108 (345)
T ss_dssp HHHTTTCSEEEECC
T ss_pred HHHhCCCCEEEECC
Confidence 88999999999964
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.09 Score=44.43 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=49.6
Q ss_pred cCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhcCcCCE
Q 023490 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETISGSDL 181 (281)
Q Consensus 108 l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t---~~~~~E~l~~ADV 181 (281)
+.| |+|.|.| .|.||.++++.|.+. |+ +|++..|...+..+.. ..++...... ..++++++++.|+
T Consensus 16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCE
Confidence 578 9999999 799999999999999 98 9988887653211111 1111110001 1245577889999
Q ss_pred EEEccCC
Q 023490 182 VLLLISD 188 (281)
Q Consensus 182 ViLavP~ 188 (281)
|+.+...
T Consensus 88 vi~~ag~ 94 (242)
T 2bka_A 88 GFCCLGT 94 (242)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9998765
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.061 Score=50.07 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=54.7
Q ss_pred cccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~ 178 (281)
..|+| .+|++||= |++..+++..+..+ |++|.+..+++- .-.+.+++.|...+ ...+++|++++
T Consensus 151 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (308)
T 1ml4_A 151 GRIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGK 221 (308)
T ss_dssp SCSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTT
T ss_pred CCCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 46889 99999997 58999999999988 999988876532 12344555564321 14689999999
Q ss_pred CCEEEEccC
Q 023490 179 SDLVLLLIS 187 (281)
Q Consensus 179 ADVViLavP 187 (281)
+|+|..-.=
T Consensus 222 aDvvyt~~~ 230 (308)
T 1ml4_A 222 LDVLYVTRI 230 (308)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCc
Confidence 999998653
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.067 Score=48.93 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=33.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
.+|+| ++|.|||.|..|..-++.|.+. |.+|++.+..
T Consensus 9 ~~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap~ 45 (274)
T 1kyq_A 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSPD 45 (274)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEEE
T ss_pred EEcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcCC
Confidence 67899 9999999999999999999999 9998877654
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.11 Score=48.21 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=53.3
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
..|+| .+|++||= +++..+++..+..+ |++|.+..++.-... +......+.. ..+++|+++++|+|.
T Consensus 150 g~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy 218 (301)
T 2ef0_A 150 GGLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALY 218 (301)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEE
T ss_pred CCcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEE
Confidence 46899 99999995 89999999999999 999988876643211 1112223543 468999999999999
Q ss_pred EccC
Q 023490 184 LLIS 187 (281)
Q Consensus 184 LavP 187 (281)
.-+=
T Consensus 219 ~~~~ 222 (301)
T 2ef0_A 219 TDVW 222 (301)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 9543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.054 Score=49.45 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| ++|.|+|. |.+|...++.++.. |.+|++..+.. +..+.+++.|.... +.. .+..+.+ ...|
T Consensus 159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNRT-AATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSG-GGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 57 99999998 99999999999998 99987777654 44667777775321 111 2333322 1589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++... .++..+..++++-.+++.+
T Consensus 230 vvid~~g~~----~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 230 MVVDPIGGP----AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred EEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence 999988753 4566777888877666543
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.12 Score=50.69 Aligned_cols=73 Identities=22% Similarity=0.124 Sum_probs=51.2
Q ss_pred ccCCCcEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 107 AFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+.+ ++|-|||.|-.|-+ +|+.|++. |++|.+.|..... ..+..++.|+....+ .+.+++..++|+|++
T Consensus 16 ~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~vV~ 86 (524)
T 3hn7_A 16 YFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLVVV 86 (524)
T ss_dssp ---C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEEEE
T ss_pred eecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEEEE
Confidence 4667 99999999999996 78889988 9999888876432 234556678765311 244555578999998
Q ss_pred --ccCC
Q 023490 185 --LISD 188 (281)
Q Consensus 185 --avP~ 188 (281)
.+|+
T Consensus 87 Spgi~~ 92 (524)
T 3hn7_A 87 GNAMKR 92 (524)
T ss_dssp CTTCCT
T ss_pred CCCcCC
Confidence 4665
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.21 Score=48.46 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=70.0
Q ss_pred ccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCccc--HHHHHH-CC-------ceecC
Q 023490 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG-------FTEEN 166 (281)
Q Consensus 107 ~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s--~~~A~~-~G-------~~~~~ 166 (281)
.++| ++|+|.|+ .+-...+++.|.+. |.+|.+++..-... .+...+ .+ +..
T Consensus 332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (481)
T 2o3j_A 332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV-- 402 (481)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence 5789 99999996 34677888888888 99998888763211 111221 11 221
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHHHH-HHHHHhcCCCCcEEEEeCCcc
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~~v-l~ei~~~mKpgaILi~aaG~~ 215 (281)
..+.+|+++++|.|++++.-.+...+ ++++...|+...+|++..++.
T Consensus 403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~ 450 (481)
T 2o3j_A 403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLIL 450 (481)
T ss_dssp --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSCS
T ss_pred --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCCC
Confidence 24778999999999999998776542 557777888777888988864
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.07 Score=50.84 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=53.7
Q ss_pred cccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHH----HHHHCC--ceecCCCcCCHH
Q 023490 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAG--FTEENGTLGDIY 173 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~----~A~~~G--~~~~~~t~~~~~ 173 (281)
..|+| .+|++||=| +++.+++..+..+ |++|.+..++.- .-.+ .+++.| +.. ..+++
T Consensus 172 g~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~ 240 (359)
T 2w37_A 172 GKLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLD 240 (359)
T ss_dssp SCCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred CCcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHH
Confidence 36899 999999975 9999999999998 999988876532 1112 223556 433 56899
Q ss_pred hhcCcCCEEEEccC
Q 023490 174 ETISGSDLVLLLIS 187 (281)
Q Consensus 174 E~l~~ADVViLavP 187 (281)
|+++++|+|..-+=
T Consensus 241 eav~~aDvvytd~w 254 (359)
T 2w37_A 241 EGLKGSNVVYTDVW 254 (359)
T ss_dssp HHHTTCSEEEECCS
T ss_pred HHhcCCCEEEEccc
Confidence 99999999999543
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.095 Score=49.20 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=51.3
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCcc------cHHHH----HH--CCceecCCCcCCH
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SFAEA----RA--AGFTEENGTLGDI 172 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~------s~~~A----~~--~G~~~~~~t~~~~ 172 (281)
.|+| .+|++||=+ ++..+++..+..+ |++|.+..+++-. -.+.+ ++ .|...+ ...++
T Consensus 158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~--~~~d~ 228 (328)
T 3grf_A 158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIK--IFHDC 228 (328)
T ss_dssp TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEE--EESSH
T ss_pred ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEE--EEcCH
Confidence 6899 999999965 8999999999998 9999888765432 11222 23 453211 15689
Q ss_pred HhhcCcCCEEEEc
Q 023490 173 YETISGSDLVLLL 185 (281)
Q Consensus 173 ~E~l~~ADVViLa 185 (281)
+|+++++|+|..-
T Consensus 229 ~eav~~aDvvytd 241 (328)
T 3grf_A 229 KKGCEGVDVVYTD 241 (328)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHhcCCCEEEec
Confidence 9999999999863
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.042 Score=50.46 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=63.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcC-CHHhhc-CcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~-~~~E~l-~~ADVViLa 185 (281)
+| .+|.|+|.|.+|...++.++.. |.+|+..++.. +..+.+++.|.... +.... +..+.+ ...|+|+-+
T Consensus 179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~~~-~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~ 250 (360)
T 1piw_A 179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRSS-RKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 250 (360)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESSS-TTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence 57 9999999999999999999998 99977766554 34667777775320 00011 333333 478999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+.... ...+++.+..++++..++..
T Consensus 251 ~g~~~-~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 251 ASSLT-DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CSCST-TCCTTTGGGGEEEEEEEEEC
T ss_pred CCCCc-HHHHHHHHHHhcCCCEEEEe
Confidence 87610 01344556778887766544
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.17 Score=45.35 Aligned_cols=76 Identities=16% Similarity=0.025 Sum_probs=51.1
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH----------HCCceecCCCcCC---
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----------AAGFTEENGTLGD--- 171 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~----------~~G~~~~~~t~~~--- 171 (281)
..+.+ |+|.|.|. |-+|..+++.|.+. |++|++..|......+... ..++..-.....+
T Consensus 23 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 95 (352)
T 1sb8_A 23 LPAQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDD 95 (352)
T ss_dssp HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHH
T ss_pred cCccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHH
Confidence 34677 99999996 99999999999998 9999888876432211111 1233211111223
Q ss_pred HHhhcCcCCEEEEccCC
Q 023490 172 IYETISGSDLVLLLISD 188 (281)
Q Consensus 172 ~~E~l~~ADVViLavP~ 188 (281)
+.+++++.|+||-+...
T Consensus 96 ~~~~~~~~d~vih~A~~ 112 (352)
T 1sb8_A 96 CNNACAGVDYVLHQAAL 112 (352)
T ss_dssp HHHHHTTCSEEEECCSC
T ss_pred HHHHhcCCCEEEECCcc
Confidence 45678899999987654
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.094 Score=51.18 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=31.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r 148 (281)
.+|+| ++|.|.|+|++|+..|+.|.+. |.+|+ +.+.
T Consensus 231 ~~l~g-~~vaVqGfGnVG~~~a~~L~e~------GakvVavsD~ 267 (440)
T 3aog_A 231 LQVEG-ARVAIQGFGNVGNAAARAFHDH------GARVVAVQDH 267 (440)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECS
T ss_pred CCccC-CEEEEeccCHHHHHHHHHHHHC------CCEEEEEEcC
Confidence 47999 9999999999999999999998 99887 4444
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.31 Score=44.93 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=64.0
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHh-hhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-----CcCCE
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----SGSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra-~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-----~~ADV 181 (281)
+| .+|.|+| .|.+|...++.++. . |.+|+..++. .+..+.+++.|....-....+..+.+ ...|+
T Consensus 171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi~~~~~-~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVIATASR-PETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAF 242 (363)
T ss_dssp SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEEEECSS-HHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEEEEeCC-HHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceE
Confidence 68 8999999 99999999999997 5 7787766554 34567788888642111112333333 25899
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|+-++... ..+++.+..++++-.++...
T Consensus 243 vid~~g~~---~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 243 VFSTTHTD---KHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp EEECSCHH---HHHHHHHHHSCTTCEEEECS
T ss_pred EEECCCch---hhHHHHHHHhcCCCEEEEEC
Confidence 99988743 35566777888888776553
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.36 E-value=0.031 Score=53.14 Aligned_cols=68 Identities=21% Similarity=0.129 Sum_probs=45.2
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEE
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVVi 183 (281)
-+.| ++|+|||-|.+|..+++.+++. |++|++.+.... +........+.. ....+ +.++++++|+|+
T Consensus 32 ~~~~-~~IlIlG~G~lg~~~~~aa~~l------G~~v~v~d~~~~-~p~~~~ad~~~~--~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPG-AWLGMVGGGQLGRMFCFAAQSM------GYRVAVLDPDPA-SPAGAVADRHLR--AAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCTT-CHHHHHSSEEEC--CCTTCHHHHHHHHHHCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCc-CchhhhCCEEEE--CCcCCHHHHHHHHhcCCEEE
Confidence 3678 9999999999999999999999 999887765432 221111111221 11223 345667899988
Q ss_pred E
Q 023490 184 L 184 (281)
Q Consensus 184 L 184 (281)
.
T Consensus 102 ~ 102 (419)
T 4e4t_A 102 T 102 (419)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.065 Score=48.46 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=63.9
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-HHCCceec-CCCcCCHHhhc-----CcCC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-NGTLGDIYETI-----SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-~~~G~~~~-~~t~~~~~E~l-----~~AD 180 (281)
+| ++|.|+|. |.+|...++.++.. |.+|+..++..+ ..+.+ ++.|.... +....+..+.+ ...|
T Consensus 149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGGAE-KCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 57 99999998 99999999999998 999877776543 34555 67775320 11112333333 2489
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.. ..++..+..++++-.+++.+
T Consensus 221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 221 VFFDNVGG----EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCc----chHHHHHHHHhhCCEEEEEe
Confidence 99988773 35677788899887776554
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.14 Score=50.61 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=59.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc---EEEEEecCCcccHHHHHHCCceec--CCCcCC----HHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEE--NGTLGD----IYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~~s~~~A~~~G~~~~--~~t~~~----~~E~l~~ADVV 182 (281)
++|.|||+|.||+.++..|.+.. ++ +|++.+..... .+.....|+... +-+..+ +++++++.|+|
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~-----dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKF-----DIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHB-----CCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCC-----CCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 57999999999999999998751 44 57777755332 122333353321 101122 33567777999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+-+.++.....+++..+. .|...++.+.
T Consensus 88 IN~s~~~~~l~Im~acle---aGv~YlDTa~ 115 (480)
T 2ph5_A 88 IDVSIGISSLALIILCNQ---KGALYINAAT 115 (480)
T ss_dssp EECCSSSCHHHHHHHHHH---HTCEEEESSC
T ss_pred EECCccccCHHHHHHHHH---cCCCEEECCC
Confidence 999988877777775433 3777776653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.11 Score=47.87 Aligned_cols=92 Identities=14% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc-----CcCCE
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l-----~~ADV 181 (281)
+| ++|.|+| .|.+|...++.++.. |.+|+..++. .+..+.+++.|.... +....+..+.+ ...|+
T Consensus 163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCSS-DEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 57 9999999 799999999999998 9988776665 334566777775321 11112333333 25799
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|+-++.. ..++..+..++++..++..+
T Consensus 235 vid~~g~----~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 235 VYESVGG----AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred EEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence 9999875 35566777788877665544
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.1 Score=49.42 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=54.0
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH--HC----C------------ceecC---
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AA----G------------FTEEN--- 166 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~--~~----G------------~~~~~--- 166 (281)
...+.+|||+|+|.+|+.+.+.|... .+++|+...++.......+. +. | +...+
T Consensus 14 ~~~~ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i 88 (354)
T 3cps_A 14 LYFQGTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVV 88 (354)
T ss_dssp ----CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEE
T ss_pred cCcceEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEE
Confidence 44457999999999999999998764 14676655541111111111 11 1 00000
Q ss_pred CCc--CCHHhhc---CcCCEEEEccCChhHHHHHHHHHhcCCCCc--EEEEeCC
Q 023490 167 GTL--GDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (281)
Q Consensus 167 ~t~--~~~~E~l---~~ADVViLavP~~~~~~vl~ei~~~mKpga--ILi~aaG 213 (281)
... .+++++- .++|+|+.++|.....+... .+++.|+ +||++.+
T Consensus 89 ~v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 89 KVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp EEECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred EEEecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence 001 1344432 47999999999866544443 4566777 7776554
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.1 Score=47.07 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=62.9
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCc-CCHHhhcC-----cCC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETIS-----GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~-~~~~E~l~-----~AD 180 (281)
+| +++.|+|. |.+|.++++.++.. |.+|++.++.. +..+.+++.|.... +... .+..+.+. ..|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGSD-EKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 57 99999997 99999999999998 99988777653 33455666664210 1111 23333332 479
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.. ..+.+.+..++++..+++.+
T Consensus 217 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVGG----EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence 99988874 24667778888877666543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.019 Score=50.25 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=45.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCc-CCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISG-SDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~-ADVViLavP 187 (281)
|+|.|.|.|-+|..+++.|.+. |++|++..|..... ..++........ +++++++. .|+||-+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 8999999999999999999999 99998888765431 112211001122 23456666 999998764
Q ss_pred C
Q 023490 188 D 188 (281)
Q Consensus 188 ~ 188 (281)
.
T Consensus 73 ~ 73 (286)
T 3gpi_A 73 A 73 (286)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.1 Score=47.11 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| ++|.|+| .|.+|...++.++.. |.+|++.++.. +..+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVSSP-EKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 57 9999999 899999999999999 99987777653 34566777775310 11112333322 2589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.. ..+...+..++++..++..+
T Consensus 212 vvid~~g~----~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 212 VVYDGVGQ----DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence 99998875 24566778888887776554
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.19 Score=47.52 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=62.7
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC---------------
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--------------- 171 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~--------------- 171 (281)
+| ++|.|+|. |.+|...++.++.. |.+|++..+. .+..+.+++.|.... +....+
T Consensus 220 ~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~ 291 (447)
T 4a0s_A 220 QG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVSS-AQKEAAVRALGCDLVINRAELGITDDIADDPRRVVET 291 (447)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCEEEecccccccccccccccccchh
Confidence 57 89999998 99999999999998 9988777654 345667788886420 000000
Q ss_pred ----HH---hh-cCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 172 ----IY---ET-ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 172 ----~~---E~-l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
.+ +. -...|+|+-++.. ..++..+..++++-.++..+
T Consensus 292 ~~~~~~~v~~~~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 292 GRKLAKLVVEKAGREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred hhHHHHHHHHHhCCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence 01 11 1358999998875 24566677888887766553
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.092 Score=49.57 Aligned_cols=70 Identities=10% Similarity=0.024 Sum_probs=50.3
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHH----HHHHCCceecCCCcCCHHhhcC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFA----EARAAGFTEENGTLGDIYETIS 177 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~----~A~~~G~~~~~~t~~~~~E~l~ 177 (281)
.|+| .+|++|| .+++..+++..+..+ |++|.+..+++-. -.+ .+++.|...+ ...+++ +++
T Consensus 172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~ 241 (339)
T 4a8t_A 172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 241 (339)
T ss_dssp CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence 5889 9999999 568999999999988 9999888765321 112 2334453211 145888 999
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
++|+|..-+
T Consensus 242 ~aDvvytd~ 250 (339)
T 4a8t_A 242 GADFLYTDV 250 (339)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999743
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.086 Score=46.50 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=46.0
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc--CCHHhhcCcCCEEEEccCC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GDIYETISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~--~~~~E~l~~ADVViLavP~ 188 (281)
|+|.|.| .|.+|..+++.|.+. |++|++..|... ..+ .. ++....+.. .++.++++++|+||.+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~-~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRSIG-NKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCC---------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCCCC-ccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 8999999 799999999999999 999988888732 222 11 332111111 2355788899999987643
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.059 Score=52.83 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=42.3
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E-~l~~ADVViLa 185 (281)
.++| +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+.... .+.+.++ .....|+|+.+
T Consensus 361 ~l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~~~~~--~~~dl~~~~~~~~DilVN~ 431 (523)
T 2o7s_A 361 PLAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIGGKAL--SLTDLDNYHPEDGMVLANT 431 (523)
T ss_dssp ------CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTTC-CE--ETTTTTTC--CCSEEEEEC
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCcee--eHHHhhhccccCceEEEEC
Confidence 4678 9999999999999999999999 99988888875443344444432110 0112222 12235666666
Q ss_pred cCC
Q 023490 186 ISD 188 (281)
Q Consensus 186 vP~ 188 (281)
++.
T Consensus 432 agv 434 (523)
T 2o7s_A 432 TSM 434 (523)
T ss_dssp SST
T ss_pred CCC
Confidence 653
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.084 Score=48.21 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=50.2
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHH-HCCceecCCCcCC---HHhhcCcC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS 179 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~-~~G~~~~~~t~~~---~~E~l~~A 179 (281)
..++| |+|.|.| .|-+|..+++.|.+. | ++|++..|......+... ..++....+...+ +++++++.
T Consensus 28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence 45788 9999999 599999999999998 9 999888776432111100 1122211111223 44678899
Q ss_pred CEEEEccCC
Q 023490 180 DLVLLLISD 188 (281)
Q Consensus 180 DVViLavP~ 188 (281)
|+||-+...
T Consensus 101 d~Vih~A~~ 109 (377)
T 2q1s_A 101 DYVFHLATY 109 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999987654
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.13 Score=49.99 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=51.0
Q ss_pred cCCCcEEEEEc-----cC---chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCC
Q 023490 108 FNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGD 171 (281)
Q Consensus 108 l~G~ktIGIIG-----~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~----A~~~G~~~~~~t~~~ 171 (281)
|+| .+|+||| +| ++..+++..+..+ |++|.+..+++- ...+. +++.|...+ ...+
T Consensus 186 l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~--~~~d 256 (418)
T 2yfk_A 186 LKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFT--KTNS 256 (418)
T ss_dssp GTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEE--EESC
T ss_pred cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEEE--EEcC
Confidence 789 9999997 34 3999999999998 999988877632 11222 334563211 1468
Q ss_pred HHhhcCcCCEEEEcc
Q 023490 172 IYETISGSDLVLLLI 186 (281)
Q Consensus 172 ~~E~l~~ADVViLav 186 (281)
++|+++++|||..-+
T Consensus 257 ~~eav~~ADVVytd~ 271 (418)
T 2yfk_A 257 MAEAFKDADVVYPKS 271 (418)
T ss_dssp HHHHHTTCSEEEECC
T ss_pred HHHHhcCCCEEEEcc
Confidence 999999999999865
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.21 Score=43.21 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=33.9
Q ss_pred ccccCCCcEEEEEcc-Cc-hHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 105 PDAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~-G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+..++| |++-|.|. |. ||.++|+.|.+. |++|++.+|..
T Consensus 17 ~~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~ 57 (266)
T 3o38_A 17 HGLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHE 57 (266)
T ss_dssp CSTTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred ccCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCH
Confidence 356889 99999998 84 999999999999 99998887764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.075 Score=48.08 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| ++|.|+| .|.+|...++.++.. |.+|++.++.. +..+.+++.|.... +....+..+.+ ...|
T Consensus 148 ~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 148 KG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVASTD-EKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCce
Confidence 67 9999999 899999999999998 99987777653 44567788875321 11112333322 2589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.. ..++..+..++++-.++..+
T Consensus 220 ~vid~~g~----~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 220 ASFDSVGK----DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence 99998875 34556667788877766554
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.16 Score=43.27 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=36.8
Q ss_pred CcccccccccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 99 DLFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 99 W~f~~~~~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|.+...+..++| |++-|.|. |-||.++|+.|.+. |++|++.+|..
T Consensus 3 ~~~~~~~~~l~~-k~vlITGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 48 (247)
T 3i1j_A 3 FDYSAHPELLKG-RVILVTGAARGIGAAAARAYAAH------GASVVLLGRTE 48 (247)
T ss_dssp CCCCCCTTTTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCCCCCccCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEecCH
Confidence 334334567899 99999994 79999999999999 99998888764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.28 Score=45.36 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=57.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----CCc---eecCCCcCCHHhh-cCcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF---TEENGTLGDIYET-ISGS 179 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~G~---~~~~~t~~~~~E~-l~~A 179 (281)
-+| ++|..||+|..|.+.....+.. |.+|+..+.. +...+.|++ .|. ... ..+..++ -...
T Consensus 121 ~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~V~gIDis-~~~l~~Ar~~~~~~gl~~v~~v---~gDa~~l~d~~F 189 (298)
T 3fpf_A 121 RRG-ERAVFIGGGPLPLTGILLSHVY------GMRVNVVEIE-PDIAELSRKVIEGLGVDGVNVI---TGDETVIDGLEF 189 (298)
T ss_dssp CTT-CEEEEECCCSSCHHHHHHHHTT------CCEEEEEESS-HHHHHHHHHHHHHHTCCSEEEE---ESCGGGGGGCCC
T ss_pred CCc-CEEEEECCCccHHHHHHHHHcc------CCEEEEEECC-HHHHHHHHHHHHhcCCCCeEEE---ECchhhCCCCCc
Confidence 367 9999999999765544333444 7777655544 444455543 243 111 1233232 2568
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
|+|++..-.....++++++...||||..|++
T Consensus 190 DvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 190 DVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp SEEEECTTCSCHHHHHHHHHHHCCTTCEEEE
T ss_pred CEEEECCCccCHHHHHHHHHHHcCCCcEEEE
Confidence 9999876544445789999999999987653
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.018 Score=51.53 Aligned_cols=69 Identities=26% Similarity=0.185 Sum_probs=44.9
Q ss_pred ccccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCC
Q 023490 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSD 180 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~AD 180 (281)
...+++ |+|.|.|. |-+|..+++.|.+. |++|++..|.... ....+.. ....+ +.+++++.|
T Consensus 14 ~~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-----~~~~~~~--~Dl~d~~~~~~~~~~~d 79 (347)
T 4id9_A 14 LVPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-----TGGEEVV--GSLEDGQALSDAIMGVS 79 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-----SCCSEEE--SCTTCHHHHHHHHTTCS
T ss_pred ccccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-----CCccEEe--cCcCCHHHHHHHHhCCC
Confidence 467888 99999996 99999999999999 9999888876532 1111221 11223 557789999
Q ss_pred EEEEccC
Q 023490 181 LVLLLIS 187 (281)
Q Consensus 181 VViLavP 187 (281)
+|+-+..
T Consensus 80 ~vih~A~ 86 (347)
T 4id9_A 80 AVLHLGA 86 (347)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9997654
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.12 Score=48.59 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=64.0
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCChh-HHHHHHHHHhcCCCCcEEEEeCCcch----hhhhhcccCCCCCceEE
Q 023490 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGVI 233 (281)
Q Consensus 159 ~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~-~~~vl~ei~~~mKpgaILi~aaG~~l----~~l~~~~~~~~~~i~VI 233 (281)
+.|+.. ..|-.|+++++|++|+-+|-.. +.+++++++++++.|++|.-..-+.. ..++. +. ++|+.|.
T Consensus 126 daGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~--l~-R~DvgIs 198 (358)
T 2b0j_A 126 DVGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD--LG-REDLNIT 198 (358)
T ss_dssp GGTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH--TT-CTTSEEE
T ss_pred HcCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHH--hC-cccCCee
Confidence 467765 5678899999999999999866 66799999999999999998776663 23333 23 6789999
Q ss_pred EeccCC-CChhhHHhhhhCccccCCC
Q 023490 234 AVCPKG-MGPSVRRLYVQGKEINGAG 258 (281)
Q Consensus 234 rvmPnt-pg~~vr~~y~~g~~~~~~g 258 (281)
..||-. ||. +||..+|-|
T Consensus 199 S~HPaaVPgt-------~Gq~~~g~~ 217 (358)
T 2b0j_A 199 SYHPGCVPEM-------KGQVYIAEG 217 (358)
T ss_dssp ECBCSSCTTT-------CCCEEEEES
T ss_pred ccCCCCCCCC-------CCccccccc
Confidence 999943 443 565444444
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.077 Score=47.83 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=68.0
Q ss_pred cCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC-HHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~-~~E~l~~ADVViL 184 (281)
-+| .+|.|+| .|.+|...++.++.. |.+|+...+. +..+.+++.|.... +....+ ..+.+...|+|+-
T Consensus 151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~~~--~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTASK--RNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEECH--HHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEecc--chHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 367 9999997 999999999999998 9987665532 33667788886421 111224 6677788999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
++.... +.+.+..++++-.++..+...
T Consensus 222 ~~g~~~----~~~~~~~l~~~G~iv~~g~~~ 248 (321)
T 3tqh_A 222 LVGGDV----GIQSIDCLKETGCIVSVPTIT 248 (321)
T ss_dssp SSCHHH----HHHHGGGEEEEEEEEECCSTT
T ss_pred CCCcHH----HHHHHHhccCCCEEEEeCCCC
Confidence 987532 366778888888777665443
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.22 Score=48.50 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=57.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-CceecCCCcCCHH---h-hcCcCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIY---E-TISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~~~~~~t~~~~~---E-~l~~ADVViLav 186 (281)
+++.|+|+|..|..+++.|.+. |++|++.+... +..+.+.+. |+..-.+...+.+ + -+++||.|++ +
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~------~~~vvvid~~~-~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t 199 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESR------NHLFVVVTDNY-DQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N 199 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTT------TCCEEEEESCH-HHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECCH-HHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e
Confidence 6899999999999999999998 99888777653 345556666 6543222333322 2 2788999998 5
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi 209 (281)
++....-.+-.....+..-.++.
T Consensus 200 ~~D~~n~~~~~~ar~~~~~~iia 222 (565)
T 4gx0_A 200 LSDPDNANLCLTVRSLCQTPIIA 222 (565)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCcHHHHHHHHHHHHhcCceEEE
Confidence 55443322223444555223443
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.17 Score=47.95 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=49.6
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHC--------CceecCCCcCCHHh
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAA--------GFTEENGTLGDIYE 174 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~--------G~~~~~~t~~~~~E 174 (281)
|+| .+|++||=+ ++..+++..+..+ |++|.+...+.- .-.+.+++. ++.. ..+++|
T Consensus 186 l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~e 254 (353)
T 3sds_A 186 LEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPEV 254 (353)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHHH
Confidence 589 999999955 7889999999888 999988876532 112223221 3333 468999
Q ss_pred hcCcCCEEEEcc
Q 023490 175 TISGSDLVLLLI 186 (281)
Q Consensus 175 ~l~~ADVViLav 186 (281)
+++++|+|..-+
T Consensus 255 av~~aDVvytd~ 266 (353)
T 3sds_A 255 AVKDADVIVTDT 266 (353)
T ss_dssp HTTTCSEEEECC
T ss_pred HhcCCCEEEeCC
Confidence 999999998754
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.069 Score=48.78 Aligned_cols=93 Identities=25% Similarity=0.282 Sum_probs=63.2
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc----C--cCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----S--GSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l----~--~AD 180 (281)
+| .+|.|+|.|.+|...++.++.. |. +|+..++. ++..+.+++.|.... +....+..+.+ . ..|
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 166 LG-DTVCVIGIGPVGLMSVAGANHL------GAGRIFAVGSR-KHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHTT------TCSSEEEECCC-HHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECCC-HHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence 57 8999999999999999999998 98 67665543 445677888886421 11112333322 1 489
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.... .+++.+..++++-.++..+
T Consensus 238 ~v~d~~g~~~---~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 238 KVVIAGGDVH---TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCChH---HHHHHHHHHhcCCEEEEec
Confidence 9999887643 4556666788877666543
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.086 Score=47.12 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=50.7
Q ss_pred ccccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC---HHhhcC--
Q 023490 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS-- 177 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-~G~~~~~~t~~~---~~E~l~-- 177 (281)
+..+.| |+|.|.|. |-||.++++.|.+. |++|++..|......+...+ .++........+ ++++++
T Consensus 15 ~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 15 VPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp CSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhc
Confidence 578999 99999995 99999999999998 99998888753321100001 122110111233 446677
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
+.|+||-+..
T Consensus 88 ~~D~vih~A~ 97 (330)
T 2pzm_A 88 KPTHVVHSAA 97 (330)
T ss_dssp CCSEEEECCC
T ss_pred CCCEEEECCc
Confidence 8999998764
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.11 Score=49.31 Aligned_cols=70 Identities=10% Similarity=0.024 Sum_probs=50.3
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHH----HHHHCCceecCCCcCCHHhhcC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFA----EARAAGFTEENGTLGDIYETIS 177 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~----~A~~~G~~~~~~t~~~~~E~l~ 177 (281)
.|+| .+|++|| .+++..+++..+..+ |++|.+..+++-. -.+ .+++.|...+ ...+++ +++
T Consensus 150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~ 219 (355)
T 4a8p_A 150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 219 (355)
T ss_dssp CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence 5889 9999999 579999999999988 9998888665321 112 2334453211 145888 999
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
++|+|..-+
T Consensus 220 ~aDVVytd~ 228 (355)
T 4a8p_A 220 GADFLYTDV 228 (355)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecc
Confidence 999999743
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.1 Score=47.90 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=63.6
Q ss_pred CCCcEEEEE-ccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCCE
Q 023490 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (281)
Q Consensus 109 ~G~ktIGII-G~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~-----~ADV 181 (281)
+| ++|.|+ |.|.+|...++.++.. |.+|++.++.. +..+.+++.|.... +....+..+.+. ..|+
T Consensus 167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGST-GKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 57 899999 6899999999999998 99987777653 34566777775321 111123333332 5899
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|+-++... .+...+..++++-.+++.+
T Consensus 239 vid~~g~~----~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 239 ILDMIGAA----YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEESCCGG----GHHHHHHTEEEEEEEEECC
T ss_pred EEECCCHH----HHHHHHHHhccCCEEEEEE
Confidence 99998864 4556677788877666543
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.55 Score=43.27 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=63.2
Q ss_pred cCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc-----CcCC
Q 023490 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l-----~~AD 180 (281)
-+| .+|.|+|. |.+|...++.++.. |.+|+... . .+..+.+++.|.... +....++.+.+ ...|
T Consensus 163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIATC-S-PHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe-C-HHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence 478 99999999 89999999999998 99876554 3 455778889986421 11112333333 2389
Q ss_pred EEEEccCChhHHHHHHHHHhcC-CCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~m-KpgaILi~aa 212 (281)
+|+-++.... .++..+..+ +++-.++..+
T Consensus 234 ~v~d~~g~~~---~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 234 YALDCITNVE---STTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEEESSCSHH---HHHHHHHHSCTTCEEEEESS
T ss_pred EEEECCCchH---HHHHHHHHhhcCCCEEEEEe
Confidence 9999988643 345555667 5766666554
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.053 Score=50.49 Aligned_cols=90 Identities=9% Similarity=0.035 Sum_probs=53.1
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccC-CcEEEEEecCCc--ccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEc
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~-G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~-~E~l~~ADVViLa 185 (281)
+++|+|+| .|.+|+.+.+.|... ++ .++++...+... +.... ....+. ..+. .+.++++|+|++|
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~----~~p~~elv~i~s~~~~G~~~~~-~~~~i~-----~~~~~~~~~~~vDvVf~a 72 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQER----EFPVDELFLLASERSEGKTYRF-NGKTVR-----VQNVEEFDWSQVHIALFS 72 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT----TCCEEEEEEEECTTTTTCEEEE-TTEEEE-----EEEGGGCCGGGCSEEEEC
T ss_pred ccEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEEECCCCCCCceee-cCceeE-----EecCChHHhcCCCEEEEC
Confidence 37899999 999999999988765 11 245554443211 10000 000111 1111 1245689999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+|.....+...... +.|+.+|+.++
T Consensus 73 ~g~~~s~~~a~~~~---~~G~~vId~s~ 97 (336)
T 2r00_A 73 AGGELSAKWAPIAA---EAGVVVIDNTS 97 (336)
T ss_dssp SCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCchHHHHHHHHHH---HcCCEEEEcCC
Confidence 99876666655443 45788887655
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.4 Score=43.85 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=48.6
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHH-CCceecCCC-cCC---HHhhcCcCCE
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA-AGFTEENGT-LGD---IYETISGSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~-~G~~~~~~t-~~~---~~E~l~~ADV 181 (281)
.+ |+|.|.| .|.+|+++++.|.+. |++|++..|...... +.... .++....+. ..+ +.++++++|+
T Consensus 4 ~~-~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~ 76 (352)
T 1xgk_A 4 QK-KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHL 76 (352)
T ss_dssp CC-CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCE
Confidence 35 8899999 699999999999988 999988887654321 11111 133211112 223 5567899999
Q ss_pred EEEccCC
Q 023490 182 VLLLISD 188 (281)
Q Consensus 182 ViLavP~ 188 (281)
|+.++..
T Consensus 77 Vi~~a~~ 83 (352)
T 1xgk_A 77 AFINTTS 83 (352)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9977654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.086 Score=47.30 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
+| .+|.|+|.|.+|...++.++.. |.+|+... . .+..+.+++.|.... ..+.+++-...|+|+-++..
T Consensus 142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS-A-SLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS 209 (315)
T ss_dssp SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC-S-SCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE-C-hhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence 67 9999999999999999999999 99887666 3 455778888887531 22323333568999988775
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.. +.+.+..++++-.++...+
T Consensus 210 ~~----~~~~~~~l~~~G~~v~~g~ 230 (315)
T 3goh_A 210 QN----AAALVPSLKANGHIICIQD 230 (315)
T ss_dssp --------TTGGGEEEEEEEEEECC
T ss_pred hh----HHHHHHHhcCCCEEEEEeC
Confidence 32 2455677888776665543
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.079 Score=48.42 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=30.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
||||+|||-|..|..+++.+++. |++|++.+..
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~~ 33 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDKN 33 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC
Confidence 79999999999999999999999 9998877654
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.097 Score=50.52 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=66.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC----cc-----c--HHHHHHCCceecCCCcCCHH
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG----SR-----S--FAEARAAGFTEENGTLGDIY 173 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~----~~-----s--~~~A~~~G~~~~~~t~~~~~ 173 (281)
..++. .+|.|+|.|.-|-++|+.+... |. +|++.|+++ .+ . ...+.+... .....+++
T Consensus 184 ~~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~---~~~~~~L~ 253 (398)
T 2a9f_A 184 KSLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR---EFKSGTLE 253 (398)
T ss_dssp CCTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC---TTCCCSCS
T ss_pred CCCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccCc---ccchhhHH
Confidence 35666 7999999999999999999998 98 888888763 11 1 112222110 01134789
Q ss_pred hhcCcCCEEEEccCChhHHHHHH-HHHhcCCCCcEEEEeCCc
Q 023490 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 174 E~l~~ADVViLavP~~~~~~vl~-ei~~~mKpgaILi~aaG~ 214 (281)
|+++++|++|=+..+ .++. ++...|+++.+|...+--
T Consensus 254 eav~~ADV~IG~Sap----gl~T~EmVk~Ma~~pIIfalsNP 291 (398)
T 2a9f_A 254 DALEGADIFIGVSAP----GVLKAEWISKMAARPVIFAMANP 291 (398)
T ss_dssp HHHHTTCSEEECCST----TCCCHHHHHTSCSSCEEEECCSS
T ss_pred HHhccCCEEEecCCC----CCCCHHHHHhhCCCCEEEECCCC
Confidence 999999998766433 3454 778889999999866543
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.17 Score=48.99 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=31.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHh-hhhhccCCcEEE-EEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVK-VGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra-~~~~~~~G~~Vi-ig~r 148 (281)
.+++| +++.|.|+|++|+..|+.|.+ . |.+|+ +.+.
T Consensus 205 ~~l~g-~~vaVqG~GnVG~~~a~~L~e~~------GakvVavsD~ 242 (415)
T 2tmg_A 205 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVSDS 242 (415)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHhc------CCEEEEEEeC
Confidence 47999 999999999999999999998 7 88877 4443
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.097 Score=50.73 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r 148 (281)
.+|+| +++.|.|+|++|+..|+.|.+. |.+|+ +.+.
T Consensus 214 ~~l~g-k~vaVqG~GnVG~~~a~~L~~~------GakVVavsD~ 250 (419)
T 3aoe_E 214 LDLRG-ARVVVQGLGQVGAAVALHAERL------GMRVVAVATS 250 (419)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEEET
T ss_pred CCccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEEcC
Confidence 47999 9999999999999999999998 99887 5554
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.17 Score=45.98 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=77.3
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc----C--cCC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI----S--GSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l----~--~AD 180 (281)
-.| .+|.|+|.|.+|...++.++.. | .+|+..++. ++..+.+++.|....-....+..+.+ . ..|
T Consensus 170 ~~g-~~vlv~GaG~vG~~a~qla~~~------g~~~Vi~~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 170 GPG-STAVVIGVGGLGHVGIQILRAV------SAARVIAVDLD-DDRLALAREVGADAAVKSGAGAADAIRELTGGQGAT 241 (345)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESC-HHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCC-HHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCe
Confidence 357 9999999999999999999876 5 466655554 44567788888642100111222222 1 689
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcch--hhhhhcccCCCCCceEEEeccCCC--ChhhHHhhhhCc
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLL--GHLQSIGLDFPKNIGVIAVCPKGM--GPSVRRLYVQGK 252 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l--~~l~~~~~~~~~~i~VIrvmPntp--g~~vr~~y~~g~ 252 (281)
+|+-++.... .+++.+..++++-.+++.+...- ..+.. ..+..++.+....-..+ =..+-+++.+|+
T Consensus 242 ~v~d~~G~~~---~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~--~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~ 312 (345)
T 3jv7_A 242 AVFDFVGAQS---TIDTAQQVVAVDGHISVVGIHAGAHAKVGF--FMIPFGASVVTPYWGTRSELMEVVALARAGR 312 (345)
T ss_dssp EEEESSCCHH---HHHHHHHHEEEEEEEEECSCCTTCCEEEST--TTSCTTCEEECCCSCCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCHH---HHHHHHHHHhcCCEEEEECCCCCCCCCcCH--HHHhCCCEEEEEecCCHHHHHHHHHHHHcCC
Confidence 9999998743 45566677888776665432211 01110 12345556554332111 124556677774
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.2 Score=45.85 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=63.5
Q ss_pred cCCCcEEEEEccCchHHHH-HHHH-HhhhhhccCCcE-EEEEecCCcc--cHHHHHHCCceecCCCcCCHHhhcC----c
Q 023490 108 FNGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETIS----G 178 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~Ai-A~~L-ra~~~~~~~G~~-Viig~r~~~~--s~~~A~~~G~~~~~~t~~~~~E~l~----~ 178 (281)
+.+ .+|.|+|.|.+|... ++.+ +.. |.+ |+..++..+. ..+.+++.|....+....+..+ +. .
T Consensus 171 ~~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg 242 (357)
T 2b5w_A 171 WDP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQ 242 (357)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCC
Confidence 455 899999999999999 9999 888 986 7776665430 4677888887531111123333 32 4
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
.|+|+-++.... .+++.+..++++-.++..+
T Consensus 243 ~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 243 MDFIYEATGFPK---HAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp EEEEEECSCCHH---HHHHHHHHEEEEEEEEECC
T ss_pred CCEEEECCCChH---HHHHHHHHHhcCCEEEEEe
Confidence 799999987642 4556667788876665443
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.41 Score=42.02 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=33.7
Q ss_pred cccccCCCcEEEEEcc-Cc--hHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 104 LPDAFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 104 ~~~~l~G~ktIGIIG~-G~--mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+..++| |++-|.|. |. ||.++|+.|.+. |++|++..|..
T Consensus 20 ~M~~l~~-k~vlVTGasg~~GIG~~ia~~l~~~------G~~V~~~~r~~ 62 (280)
T 3nrc_A 20 HMGFLAG-KKILITGLLSNKSIAYGIAKAMHRE------GAELAFTYVGQ 62 (280)
T ss_dssp --CTTTT-CEEEECCCCSTTCHHHHHHHHHHHT------TCEEEEEECTT
T ss_pred cccccCC-CEEEEECCCCCCCHHHHHHHHHHHc------CCEEEEeeCch
Confidence 4678999 99999995 56 999999999999 99998888764
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.33 Score=42.92 Aligned_cols=72 Identities=17% Similarity=0.149 Sum_probs=45.5
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC-cccHH---HHHHCC-ceecCCCcCC---HHhhcCc--C
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFA---EARAAG-FTEENGTLGD---IYETISG--S 179 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~-~~s~~---~A~~~G-~~~~~~t~~~---~~E~l~~--A 179 (281)
||+|.|.| .|-+|..+++.|.+. |++|++.+|.. ....+ .....+ +........+ +++++++ .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 58999999 799999999999998 99998877632 11111 111112 2111111223 4567777 9
Q ss_pred CEEEEccCC
Q 023490 180 DLVLLLISD 188 (281)
Q Consensus 180 DVViLavP~ 188 (281)
|+||-+...
T Consensus 75 d~vih~A~~ 83 (347)
T 1orr_A 75 DSCFHLAGQ 83 (347)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 999987653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.16 Score=46.04 Aligned_cols=92 Identities=17% Similarity=0.148 Sum_probs=62.4
Q ss_pred CCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| ++|.|+|.| .+|...++.++.. |.+|++.++... ..+.+++.|.... +....+..+.+ ...|
T Consensus 144 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~~-~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~D 215 (340)
T 3gms_A 144 RN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRNNK-HTEELLRLGAAYVIDTSTAPLYETVMELTNGIGAD 215 (340)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESSST-THHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCCHH-HHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCc
Confidence 57 999999987 8999999999998 999887776643 4667777775321 11112333322 2589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++..... .+.+..++++-.++..+
T Consensus 216 vvid~~g~~~~----~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 216 AAIDSIGGPDG----NELAFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEESSCHHHH----HHHHHTEEEEEEEEECC
T ss_pred EEEECCCChhH----HHHHHHhcCCCEEEEEe
Confidence 99998875433 23346788877666543
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.12 Score=48.50 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=51.1
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cHHH----HHHCC--ceecCCCcCCHHh
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE----ARAAG--FTEENGTLGDIYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~~~----A~~~G--~~~~~~t~~~~~E 174 (281)
..|+| .+|++||=| ++..+++..+..+ |++|.+..++.-. -.+. +++.| +.. ..+++|
T Consensus 151 g~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e 219 (321)
T 1oth_A 151 SSLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLE 219 (321)
T ss_dssp SCCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CCcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 46899 999999975 5888888888877 9999888766421 1122 22344 333 568999
Q ss_pred hcCcCCEEEEcc
Q 023490 175 TISGSDLVLLLI 186 (281)
Q Consensus 175 ~l~~ADVViLav 186 (281)
+++++|+|..-+
T Consensus 220 av~~aDvvy~d~ 231 (321)
T 1oth_A 220 AAHGGNVLITDT 231 (321)
T ss_dssp HHTTCSEEEECC
T ss_pred HhccCCEEEEec
Confidence 999999999954
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.19 Score=43.11 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=48.5
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC--ceecCCCcCC---HHhhcC---
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGD---IYETIS--- 177 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G--~~~~~~t~~~---~~E~l~--- 177 (281)
.++| |++-|.| .|-||.++++.|.+. |++|++..|...+..+...+.+ +........+ ++++++
T Consensus 9 ~~~~-k~vlVTGasggiG~~~a~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (265)
T 2o23_A 9 SVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAK 81 (265)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 5789 9999999 679999999999999 9999888887554333333322 1110011223 334444
Q ss_pred ----cCCEEEEcc
Q 023490 178 ----GSDLVLLLI 186 (281)
Q Consensus 178 ----~ADVViLav 186 (281)
..|+||.+.
T Consensus 82 ~~~g~id~li~~A 94 (265)
T 2o23_A 82 GKFGRVDVAVNCA 94 (265)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHCCCCCEEEECC
Confidence 789999864
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.25 Score=46.29 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=52.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC-CcccHHHHH----HCC------------ceecCC---C--
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEAR----AAG------------FTEENG---T-- 168 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~-~~~s~~~A~----~~G------------~~~~~~---t-- 168 (281)
|.+|||+|+|.+|+.+.+.|... ..++|+..++. +.+...... ..| +...+. .
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~-----~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~ 75 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKN-----PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKA 75 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTC-----TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEEC
T ss_pred CeEEEEECCCHHHHHHHHHHhCC-----CCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEe
Confidence 46899999999999999988754 14566544433 111111111 011 000000 0
Q ss_pred cCCHHhh-cC--cCCEEEEccCChhHHHHHHHHHhcCCCCc--EEEEeCC
Q 023490 169 LGDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (281)
Q Consensus 169 ~~~~~E~-l~--~ADVViLavP~~~~~~vl~ei~~~mKpga--ILi~aaG 213 (281)
..+++++ .. ++|+|+.++|.....+...+.+ +.|+ +||++.+
T Consensus 76 ~~dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l---~~Gak~vVId~pa 122 (334)
T 3cmc_O 76 ERDPENLAWGEIGVDIVVESTGRFTKREDAAKHL---EAGAKKVIISAPA 122 (334)
T ss_dssp CSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSCC
T ss_pred cCChhhcCcccCccCEEEECCCchhhHHHHHHHH---HCCCCEEEEeCCC
Confidence 1133332 12 7999999999876655555443 3466 7776543
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.36 Score=44.41 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=31.4
Q ss_pred CCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 98 RDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 98 ~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
+|-+.-+...|++ ++|.|||+|-+|..+++.|... |. ++.+.|+.
T Consensus 24 ~~G~~~~q~kL~~-~~VlVvGaGGlGs~va~~La~a------GVG~i~lvD~D 69 (292)
T 3h8v_A 24 RMGIVSDYEKIRT-FAVAIVGVGGVGSVTAEMLTRC------GIGKLLLFDYD 69 (292)
T ss_dssp --------CGGGG-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCC
T ss_pred ccChHHHHHHHhC-CeEEEECcCHHHHHHHHHHHHc------CCCEEEEECCC
Confidence 4555223467888 9999999999999999999988 65 56666543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.17 Score=46.95 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceec-CCC---cCCHHhhc------C
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI------S 177 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~-~~t---~~~~~E~l------~ 177 (281)
+| .+|.|+|.|.+|...++.++.. | .+|+..++.. +..+.+++.|.... +.. ..++.+.+ .
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~~-~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~ 266 (380)
T 1vj0_A 195 AG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAGSP-NRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 266 (380)
T ss_dssp BT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEESCH-HHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCceEEEEcCCH-HHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCC
Confidence 57 9999999999999999999998 9 5887776553 44667788886320 000 00111222 1
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
..|+|+-++.... .+++.+..++++-.++..+
T Consensus 267 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 267 GADFILEATGDSR---ALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp CEEEEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred CCcEEEECCCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 5899999987532 3455566777876665443
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.24 Score=47.27 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=53.9
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCC-cEEE-EE-ecC-CcccHHHH-------------HHCCceecCCCcCCHH
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVK-VG-LRK-GSRSFAEA-------------RAAGFTEENGTLGDIY 173 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G-~~Vi-ig-~r~-~~~s~~~A-------------~~~G~~~~~~t~~~~~ 173 (281)
.+||||| .|..|+.+.+.|... . .++. +. .++ ..+..... .+.-+.. .+.+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h------p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~-----~~~~ 88 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH------PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE-----CKPE 88 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE-----SSSC
T ss_pred cEEEEECCCChHHHHHHHHHHcC------CCceEEEeeccccccCCCHHHhcccccccccccccccceEEe-----Cchh
Confidence 6899999 799999999988765 3 3553 22 222 12222211 1111211 1222
Q ss_pred hhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 174 E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+.++++|+||+|+|.....++..++. +.|+.+|+.++
T Consensus 89 ~~~~~~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa 125 (381)
T 3hsk_A 89 GNFLECDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAK 125 (381)
T ss_dssp TTGGGCSEEEECCCHHHHHHHHHHHH---HTTCEEEECCS
T ss_pred hhcccCCEEEECCChhHHHHHHHHHH---hCCCEEEEcCC
Confidence 24689999999999877666666553 45787876554
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.17 Score=43.76 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=33.2
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+|+| |++-|.|. |-||.++|+.|.+. |++|++.+|..
T Consensus 2 ~~l~g-k~vlVTGas~gIG~a~a~~l~~~------G~~V~~~~r~~ 40 (247)
T 3rwb_A 2 ERLAG-KTALVTGAAQGIGKAIAARLAAD------GATVIVSDINA 40 (247)
T ss_dssp CTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSCH
T ss_pred CCcCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 56899 99999995 68999999999999 99998887764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.1 Score=47.15 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HCCceec-CCC-cCCHHhhcC-----cC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT-LGDIYETIS-----GS 179 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~G~~~~-~~t-~~~~~E~l~-----~A 179 (281)
+| +++.|+|. |.+|...++.++.. |.+|++.++.. +..+.++ +.|.... +.. ..++.+.+. ..
T Consensus 155 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------G~~V~~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EG-ETVYVSAASGAVGQLVGQLAKMM------GCYVVGSAGSK-EKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 57 99999997 99999999999998 99887776653 3345555 5664210 101 113333332 58
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
|+|+-++.. ..+...+..++++-.+++.+
T Consensus 227 d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 227 DIYFENVGG----KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence 999988864 25667778888877666543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.57 Score=43.08 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=64.4
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc---CcCCEEE
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI---SGSDLVL 183 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l---~~ADVVi 183 (281)
+| ++|.|+| .|.+|...++.++.. |.+|+...+ .+..+.+++.|.... +....+..+.+ ...|+|+
T Consensus 183 ~g-~~VlV~Ga~G~vG~~~~qla~~~------Ga~Vi~~~~--~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 183 TG-KRVLILGASGGVGTFAIQVMKAW------DAHVTAVCS--QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEC--GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEeC--hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEE
Confidence 57 8999999 799999999999998 998876553 345677888885321 11112333333 3689999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
-++.... ..+.+.+..++++-.++..++
T Consensus 254 d~~g~~~--~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 254 DNVGGST--ETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp ESSCTTH--HHHGGGGBCSSSCCEEEESCC
T ss_pred ECCCChh--hhhHHHHHhhcCCcEEEEeCC
Confidence 9987642 134556677888887766554
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.059 Score=51.35 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=49.0
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s-~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
++.| |+|.|||.|..|.+.|+.|.+. |++|...+.+.... ..... .|+....+. ...+.++.+|+|++.
T Consensus 2 ~~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s 71 (439)
T 2x5o_A 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVAS 71 (439)
T ss_dssp CCTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEEC
T ss_pred CCCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeC
Confidence 4678 9999999999999999999988 99998888764321 11122 465532111 124566689999996
Q ss_pred c
Q 023490 186 I 186 (281)
Q Consensus 186 v 186 (281)
.
T Consensus 72 ~ 72 (439)
T 2x5o_A 72 P 72 (439)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.46 Score=41.44 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=34.6
Q ss_pred CcccccccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 99 DLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 99 W~f~~~~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|..+.....+.| |++-|.| .|-||.++++.|.+. |++|++.+|..
T Consensus 20 ~~~~~~~~~l~~-k~vlITGasggIG~~la~~L~~~------G~~V~~~~r~~ 65 (272)
T 1yb1_A 20 GHMPKRRKSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINK 65 (272)
T ss_dssp -----CCCCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred cccCCcccccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEEcCH
Confidence 433333467899 9999999 679999999999999 99998887763
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.099 Score=47.98 Aligned_cols=92 Identities=21% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-HCCceecCCCcCC---HHhhcCcCCEEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGSDLVLL 184 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-~~G~~~~~~t~~~---~~E~l~~ADVViL 184 (281)
+| .+|.|+|.|.+|...++.++.. |.+|++.++..+ ..+.++ +.|....- ...+ ..++....|+|+-
T Consensus 180 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~~~~~-~~~~~~~~lGa~~vi-~~~~~~~~~~~~~g~D~vid 250 (357)
T 2cf5_A 180 PG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSNK-KREEALQDLGADDYV-IGSDQAKMSELADSLDYVID 250 (357)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESSTT-HHHHHHTTSCCSCEE-ETTCHHHHHHSTTTEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCChH-HHHHHHHHcCCceee-ccccHHHHHHhcCCCCEEEE
Confidence 78 9999999999999999999998 998877776543 345555 67753100 0122 2233346899999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.... .++..+..++++-.++..+
T Consensus 251 ~~g~~~---~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 251 TVPVHH---ALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp CCCSCC---CSHHHHTTEEEEEEEEECS
T ss_pred CCCChH---HHHHHHHHhccCCEEEEeC
Confidence 987532 2344556778877665543
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.14 Score=46.21 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=47.7
Q ss_pred cccccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC-C---HHhhc
Q 023490 102 KLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-D---IYETI 176 (281)
Q Consensus 102 ~~~~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~-~---~~E~l 176 (281)
..++..+.+ |+|.|+| .|-+|..+++.|.+. .|++|++..|...+........++....+... + +.+++
T Consensus 16 ~~~~~~m~~-~~vlVtGatG~iG~~l~~~L~~~-----~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~ 89 (372)
T 3slg_A 16 TQGPGSMKA-KKVLILGVNGFIGHHLSKRILET-----TDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHV 89 (372)
T ss_dssp -------CC-CEEEEESCSSHHHHHHHHHHHHH-----SSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHH
T ss_pred hcCCcccCC-CEEEEECCCChHHHHHHHHHHhC-----CCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHh
Confidence 334566788 9999999 799999999999875 16899888876543221111123322111222 2 45678
Q ss_pred CcCCEEEEccC
Q 023490 177 SGSDLVLLLIS 187 (281)
Q Consensus 177 ~~ADVViLavP 187 (281)
+++|+||-+.-
T Consensus 90 ~~~d~Vih~A~ 100 (372)
T 3slg_A 90 KKCDVILPLVA 100 (372)
T ss_dssp HHCSEEEECBC
T ss_pred ccCCEEEEcCc
Confidence 89999997543
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.34 Score=45.39 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=19.6
Q ss_pred cEEEEEccCchHHHHHHHHHh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRD 132 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra 132 (281)
.+|||+|+|.+|+.+.+.|..
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~ 23 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYE 23 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHHc
Confidence 589999999999999999876
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.75 Score=37.96 Aligned_cols=92 Identities=14% Similarity=0.025 Sum_probs=55.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH----CC---ceecCCCcCCHHh---hcCc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AG---FTEENGTLGDIYE---TISG 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~----~G---~~~~~~t~~~~~E---~l~~ 178 (281)
+| .+|.-||+|. |. ++..+... +.+.+|+..+. .....+.+++ .| +... ..+..+ ....
T Consensus 40 ~~-~~vLDiG~G~-G~-~~~~la~~----~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~~ 108 (204)
T 3e05_A 40 DD-LVMWDIGAGS-AS-VSIEASNL----MPNGRIFALER-NPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDLPD 108 (204)
T ss_dssp TT-CEEEEETCTT-CH-HHHHHHHH----CTTSEEEEEEC-CHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTSCC
T ss_pred CC-CEEEEECCCC-CH-HHHHHHHH----CCCCEEEEEeC-CHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcCCC
Confidence 57 8999999996 43 33334443 11256654444 3434444432 22 2211 122222 2367
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.|+|++..+......+++++...+|||-.+++.
T Consensus 109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 999999887766667899999999999877654
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=93.05 E-value=0.52 Score=43.05 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=61.7
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcc---cHHHHHHCCceec-CCC---cCCHHhhcC---
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEE-NGT---LGDIYETIS--- 177 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~---s~~~A~~~G~~~~-~~t---~~~~~E~l~--- 177 (281)
+| .+|.|+|. |.+|...++.++.. |.++++..+..+. ..+.+++.|...- +.. ..++.+...
T Consensus 167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSC
T ss_pred CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCC
Confidence 57 99999997 99999999999998 9987766654332 2356778886420 000 011223332
Q ss_pred cCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 178 ~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
..|+|+-++..... .+.+..++++-.++..++
T Consensus 240 ~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~ 271 (357)
T 1zsy_A 240 QPRLALNCVGGKSS----TELLRQLARGGTMVTYGG 271 (357)
T ss_dssp CCSEEEESSCHHHH----HHHHTTSCTTCEEEECCC
T ss_pred CceEEEECCCcHHH----HHHHHhhCCCCEEEEEec
Confidence 38999998874322 346788898877765543
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.068 Score=49.84 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=50.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEe-cCCc-ccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKGS-RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~-r~~~-~s~~~A~~~G~~~~~~t~~~~-~E~l~~ADVViLavP 187 (281)
++|+|+| .|.+|+.+.+.|.+. .-..++++... +... +... -.|.... ..+. .+.++++|+|++++|
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~---~~~~~elv~i~s~~~~g~~~~---~~g~~i~---~~~~~~~~~~~~DvV~~a~g 77 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDER---DFPLHRLHLLASAESAGQRMG---FAESSLR---VGDVDSFDFSSVGLAFFAAA 77 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT---TCCCSCEEEEECTTTTTCEEE---ETTEEEE---CEEGGGCCGGGCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhC---CCCcEEEEEEecCCCCCCccc---cCCcceE---EecCCHHHhcCCCEEEEcCC
Confidence 6899999 899999999998854 00123444333 2211 1000 0111110 1111 123678999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....+...... +.|+.+++.++
T Consensus 78 ~~~s~~~a~~~~---~aG~kvId~Sa 100 (340)
T 2hjs_A 78 AEVSRAHAERAR---AAGCSVIDLSG 100 (340)
T ss_dssp HHHHHHHHHHHH---HTTCEEEETTC
T ss_pred cHHHHHHHHHHH---HCCCEEEEeCC
Confidence 876655555443 34776776544
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=93.01 E-value=0.26 Score=45.85 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=53.2
Q ss_pred cccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~ 178 (281)
..|+| .+|++||= +++..+++..+..+ .|++|.+..+++- .-.+.+++.|...+ ...+++|++++
T Consensus 150 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (310)
T 3csu_A 150 GRLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAE 221 (310)
T ss_dssp SCSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTT
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 46899 99999997 58999999988764 2889888876532 12244556664321 14689999999
Q ss_pred CCEEEEcc
Q 023490 179 SDLVLLLI 186 (281)
Q Consensus 179 ADVViLav 186 (281)
+|+|..-.
T Consensus 222 aDvvyt~~ 229 (310)
T 3csu_A 222 VDILYMTR 229 (310)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 99999865
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.01 E-value=0.15 Score=45.91 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=60.8
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| +++.|+| .|.+|..+++.++.. |.+|++.++.. +..+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~V~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGTA-QKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 57 9999999 799999999999999 99987776653 33455666664210 11111222222 2479
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.. ..++..+..|+++..++..+
T Consensus 212 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 212 VVYDSVGR----DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEECSCG----GGHHHHHHTEEEEEEEEECC
T ss_pred EEEECCch----HHHHHHHHHhcCCCEEEEEe
Confidence 99999872 24566677888877665443
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.77 Score=40.07 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=33.3
Q ss_pred cccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| |++-|.|. |-||.++|+.|.+. |++|++..|..
T Consensus 2 ~~l~~-k~vlVTGas~~~gIG~~~a~~l~~~------G~~V~~~~r~~ 42 (275)
T 2pd4_A 2 GFLKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE 42 (275)
T ss_dssp CTTTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST
T ss_pred CCCCC-CEEEEECCCCCCcHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 35788 99999996 69999999999998 99998888764
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.25 Score=43.29 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=31.8
Q ss_pred cccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc
Q 023490 104 LPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (281)
Q Consensus 104 ~~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~ 152 (281)
....++| |++-|.| .|-||.++|+.|.+. |++|++.+|...+
T Consensus 21 ~~m~l~~-k~vlVTGas~gIG~aia~~l~~~------G~~V~~~~r~~~~ 63 (260)
T 3gem_A 21 GHMTLSS-APILITGASQRVGLHCALRLLEH------GHRVIISYRTEHA 63 (260)
T ss_dssp ------C-CCEEESSTTSHHHHHHHHHHHHT------TCCEEEEESSCCH
T ss_pred cCcCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCChHH
Confidence 3456889 9999999 578999999999999 9999988887654
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.19 Score=46.95 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=56.5
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC-------------------cccHH---HHHHC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~-------------------~~s~~---~A~~~- 160 (281)
...|++ .+|.|||+|-+|..+|++|... |. ++.+.|... .+... ...+.
T Consensus 31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 466888 9999999999999999999998 76 666664321 01111 11121
Q ss_pred -Cceec--CCCc-CCHHhhcCcCCEEEEccCChhHHHHHHHHHhc
Q 023490 161 -GFTEE--NGTL-GDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (281)
Q Consensus 161 -G~~~~--~~t~-~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~ 201 (281)
++..+ .... ...++.+++.|+|+.++-.......+++....
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~ 148 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHK 148 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 12110 0001 12467889999999987766555567755443
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.43 Score=41.32 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=33.3
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..++| |++-|.| .|-||.++|+.|.+. |++|++.+|..
T Consensus 4 ~~l~~-k~vlVTGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 42 (259)
T 4e6p_A 4 KRLEG-KSALITGSARGIGRAFAEAYVRE------GATVAIADIDI 42 (259)
T ss_dssp CTTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 46889 9999999 579999999999999 99998887764
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.51 Score=41.03 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=32.8
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
..|+| |++-|.| .|-||.++|+.|.+. |++|++..+...
T Consensus 4 ~~l~~-k~vlVTGas~GIG~aia~~la~~------G~~V~~~~~~~~ 43 (259)
T 3edm_A 4 QRFTN-RTIVVAGAGRDIGRACAIRFAQE------GANVVLTYNGAA 43 (259)
T ss_dssp CTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECSSC
T ss_pred cCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCCCH
Confidence 46889 9999999 468999999999999 999988755543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.44 Score=45.44 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=41.3
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc-----EEEEEecCCccc----HHHHH--HCCce---ecCCCcCCHHhhc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGLRKGSRS----FAEAR--AAGFT---EENGTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~-----~Viig~r~~~~s----~~~A~--~~G~~---~~~~t~~~~~E~l 176 (281)
.||+||| .|.+|.+++-.|... ++ .+.+.+-..... .-.+. +.+.. ..-....+..+.+
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence 7899999 899999999999876 44 244443221111 11121 22210 0000123567899
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
++||+|++..
T Consensus 107 ~daDvVVita 116 (375)
T 7mdh_A 107 EDVDWALLIG 116 (375)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 9999999964
|
| >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.24 Score=45.23 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=57.0
Q ss_pred cccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcC
Q 023490 100 LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 100 ~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~A 179 (281)
.|.......+| ++|++||+ + +.+.+.+. . +.++.+.++.+. .|... ....++++++|
T Consensus 131 ~~~~~~~~~~g-~kV~vIG~--~-P~i~~~l~-~------~~~v~V~d~~p~--------~g~~p----~~~~e~ll~~a 187 (270)
T 2h1q_A 131 PFIMSQNEVKG-KKVGVVGH--F-PHLESLLE-P------ICDLSILEWSPE--------EGDYP----LPASEFILPEC 187 (270)
T ss_dssp HHHHTTTTTTT-SEEEEESC--C-TTHHHHHT-T------TSEEEEEESSCC--------TTCEE----GGGHHHHGGGC
T ss_pred HHHHHHhhcCC-CEEEEECC--C-HHHHHHHh-C------CCCEEEEECCCC--------CCCCC----hHHHHHHhhcC
Confidence 35433355788 99999999 3 66766554 4 688999998753 23322 23467799999
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
|+|++.-.- -.-.-+++++.+.++...+++
T Consensus 188 D~viiTGsT-lvN~Ti~~lL~~~~~a~~vvl 217 (270)
T 2h1q_A 188 DYVYITCAS-VVDKTLPRLLELSRNARRITL 217 (270)
T ss_dssp SEEEEETHH-HHHTCHHHHHHHTTTSSEEEE
T ss_pred CEEEEEeee-eecCCHHHHHHhCccCCeEEE
Confidence 999986431 112345677777877655544
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.45 Score=43.41 Aligned_cols=92 Identities=10% Similarity=0.022 Sum_probs=59.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcE-EEEEecCCcccHHHHHHCC--c-eec-C-CCcCCHHhhc------
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG--F-TEE-N-GTLGDIYETI------ 176 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~-Viig~r~~~~s~~~A~~~G--~-~~~-~-~t~~~~~E~l------ 176 (281)
+| .+|.|+|.|.+|...++.++.. |.+ |++.++. ++..+.+++.+ + ... + ....++.+.+
T Consensus 179 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~-~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 179 LG-DPVLICGAGPIGLITMLCAKAA------GACPLVITDID-EGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEEESC-HHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhchhcccccccccchHHHHHHHHHHhCC
Confidence 57 9999999999999999999998 987 6655544 34455666652 1 100 0 0001122222
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
...|+|+-++.... .++..+..++++-.+++.
T Consensus 251 ~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 251 IEPAVALECTGVES---SIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 25899999988643 456666778888776654
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.28 Score=47.20 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=51.1
Q ss_pred ccCCCcEEEEEcc-----C---chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcC
Q 023490 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLG 170 (281)
Q Consensus 107 ~l~G~ktIGIIG~-----G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~----~A~~~G~~~~~~t~~ 170 (281)
.|+| ++|+|+|- | ++..+++..+..+ |++|.+..+++- ...+ .+++.|...+ ...
T Consensus 188 ~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~--~~~ 258 (399)
T 3q98_A 188 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFR--QVT 258 (399)
T ss_dssp GGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EES
T ss_pred ccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EEc
Confidence 4788 99999973 4 7889999999888 999988876532 1122 2334563211 146
Q ss_pred CHHhhcCcCCEEEEcc
Q 023490 171 DIYETISGSDLVLLLI 186 (281)
Q Consensus 171 ~~~E~l~~ADVViLav 186 (281)
+++|+++++|+|..-+
T Consensus 259 d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 259 SMEEAFKDADIVYPKS 274 (399)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEecC
Confidence 8999999999999865
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.13 Score=46.75 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=43.5
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc-------EEEEEecCCc--ccHHHHH--HC---CceecCCCcCCHHhhc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEAR--AA---GFTEENGTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-------~Viig~r~~~--~s~~~A~--~~---G~~~~~~t~~~~~E~l 176 (281)
++|.|+|. |.+|..++..|... |+ +|.+.++... +....+. .. .+...-....+..+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~ 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAF 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHh
Confidence 68999996 99999999999887 75 7777665421 1111111 11 1110000024678889
Q ss_pred CcCCEEEEcc
Q 023490 177 SGSDLVLLLI 186 (281)
Q Consensus 177 ~~ADVViLav 186 (281)
+++|+|+.+.
T Consensus 79 ~~~D~Vih~A 88 (327)
T 1y7t_A 79 KDADYALLVG 88 (327)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEECC
Confidence 9999999863
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.38 Score=41.94 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=33.9
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.+++| |++-|.| .|-||.++|+.|.+. |++|++..|...
T Consensus 25 m~l~~-k~vlITGas~gIG~~la~~l~~~------G~~V~~~~r~~~ 64 (271)
T 4iin_A 25 MQFTG-KNVLITGASKGIGAEIAKTLASM------GLKVWINYRSNA 64 (271)
T ss_dssp CCCSC-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCH
T ss_pred cccCC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCH
Confidence 46889 9999999 579999999999999 999988888643
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.29 Score=45.95 Aligned_cols=88 Identities=20% Similarity=0.202 Sum_probs=52.4
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc---EEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+|+||| .|..|+.+.+.|... .+ ++.......+ +.... .......+ ..+ ++.++++|+||+|
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h------~fp~~el~~~~s~~~aG~~~~~-~~~~~~~~---~~~-~~~~~~~Dvvf~a 70 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDER------DFPASAVRFFASARSQGRKLAF-RGQEIEVE---DAE-TADPSGLDIALFS 70 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TCCEEEEEEEECTTTSSCEEEE-TTEEEEEE---ETT-TSCCTTCSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCceEEEEEECcccCCCceee-cCCceEEE---eCC-HHHhccCCEEEEC
Confidence 7899999 899999999988765 33 3333322111 10000 00001110 011 2456899999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+|.....+...++. +.|+.+|+.++
T Consensus 71 ~~~~~s~~~a~~~~---~~G~~vID~Sa 95 (344)
T 3tz6_A 71 AGSAMSKVQAPRFA---AAGVTVIDNSS 95 (344)
T ss_dssp SCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CChHHHHHHHHHHH---hCCCEEEECCC
Confidence 99876666666543 45888887655
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.19 Score=45.37 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=61.3
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh----c--CcCC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET----I--SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~----l--~~AD 180 (281)
+| +++.|+|. |.+|.++++.++.. |.+|++.++.. +..+.+++.|.... +....+..+. . ...|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~Vi~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 145 PG-DYVLIHAAAGGMGHIMVPWARHL------GATVIGTVSTE-EKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp TT-CEEEETTTTSTTHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 57 99999995 99999999999998 99988777653 33455666664210 1111122222 2 2589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+-++.. ..++..+..++++..++..+
T Consensus 217 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 217 VVYDSIGK----DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp EEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred EEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence 99998875 34566677888877666543
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.43 Score=45.32 Aligned_cols=92 Identities=20% Similarity=0.135 Sum_probs=62.9
Q ss_pred cCCCcEEEEEccC----------chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH------HCC---ce-ecCC
Q 023490 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------AAG---FT-EENG 167 (281)
Q Consensus 108 l~G~ktIGIIG~G----------~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~------~~G---~~-~~~~ 167 (281)
.+| ++|+|.|+. +-...+++.|.+. |.+|.+++..- +.++ .++ .. ....
T Consensus 311 ~~~-~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~------g~~v~~~DP~~----~~~~~~~~~~~~~~~~~~~~~~~ 379 (436)
T 1mv8_A 311 HDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNV----EYARVHGANKEYIESKIPHVSSL 379 (436)
T ss_dssp SSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHH----HHHTTSSSCHHHHHHTSHHHHTT
T ss_pred hcC-CEEEEEccccCCCCCccccCcHHHHHHHHHHC------CCEEEEECCCC----Chhhccchhhhhccccccccccc
Confidence 378 999999987 5678999999998 99999887641 1111 111 00 0000
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
...+.+|+++++|+|++++.-.+...+- ...|+ +.+|++..++
T Consensus 380 ~~~~~~~~~~~~d~~vi~~~~~~~~~~~---~~~~~-~~~i~D~r~~ 422 (436)
T 1mv8_A 380 LVSDLDEVVASSDVLVLGNGDELFVDLV---NKTPS-GKKLVDLVGF 422 (436)
T ss_dssp BCSCHHHHHHHCSEEEECSCCGGGHHHH---HSCCT-TCEEEESSSC
T ss_pred ccCCHHHHHhCCcEEEEeCCcHHHHhhh---HHhcC-CCEEEECCCC
Confidence 1347889999999999999986654332 34555 5788888775
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.6 Score=41.22 Aligned_cols=40 Identities=15% Similarity=-0.011 Sum_probs=34.1
Q ss_pred ccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 105 ~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+..+.| |++-|.| .|-||.++|+.|.+. |.+|++.++...
T Consensus 24 m~~~~~-k~~lVTGas~GIG~aia~~la~~------G~~V~~~~~~~~ 64 (280)
T 4da9_A 24 MTQKAR-PVAIVTGGRRGIGLGIARALAAS------GFDIAITGIGDA 64 (280)
T ss_dssp CSCCCC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCH
T ss_pred hhccCC-CEEEEecCCCHHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence 467899 9999999 568999999999999 999988876543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.43 Score=41.39 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=46.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLavP 187 (281)
|+|.|.| .|.+|+.+++.|.+. .|++|++..|...+.. .....++....+.+.+ +.++++++|+|+.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-----~g~~V~~~~R~~~~~~-~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-----HIDHFHIGVRNVEKVP-DDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-----TCTTEEEEESSGGGSC-GGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-----CCCcEEEEECCHHHHH-HhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5789999 699999999998763 1678888887654221 1112233221122333 5578999999999876
Q ss_pred C
Q 023490 188 D 188 (281)
Q Consensus 188 ~ 188 (281)
.
T Consensus 75 ~ 75 (289)
T 3e48_A 75 I 75 (289)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.57 Score=41.26 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..|+| |++-|.|. |-||.++|+.|.+. |++|++.++..
T Consensus 27 ~~l~g-k~~lVTGas~GIG~aia~~la~~------G~~V~~~~~~~ 65 (271)
T 3v2g_A 27 ISLAG-KTAFVTGGSRGIGAAIAKRLALE------GAAVALTYVNA 65 (271)
T ss_dssp TCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSC
T ss_pred cCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCC
Confidence 46899 99999994 68999999999999 99998876664
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.28 Score=44.20 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=33.1
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHh--hhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRD--SLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra--~~~~~~~G~~Viig~r~~ 150 (281)
.++.| |+|.|.| .|-+|.++++.|.+ . |++|++.+|..
T Consensus 6 ~~~~~-~~vlVTGatG~IG~~l~~~L~~~~~------g~~V~~~~r~~ 46 (362)
T 3sxp_A 6 DELEN-QTILITGGAGFVGSNLAFHFQENHP------KAKVVVLDKFR 46 (362)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHHCT------TSEEEEEECCC
T ss_pred hhcCC-CEEEEECCCCHHHHHHHHHHHhhCC------CCeEEEEECCC
Confidence 35788 9999997 69999999999999 8 99998888754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 281 | ||||
| d1qmga2 | 226 | c.2.1.6 (A:82-307) Class II ketol-acid reductoisom | 4e-83 | |
| d1np3a2 | 182 | c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer | 6e-35 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.004 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 247 bits (631), Expect = 4e-83
Identities = 165/200 (82%), Positives = 184/200 (92%)
Query: 68 TPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQ 267
YVQGKE+NGAGINSSFAVHQ
Sbjct: 181 YVQGKEVNGAGINSSFAVHQ 200
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 122 bits (307), Expect = 6e-35
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 20/156 (12%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQV---VPRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
VI + PK G +VR +V+G I A++Q
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQ 154
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 35.3 bits (80), Expect = 0.004
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAE----AKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
V+G G+ G A A L +K +G+ AG +
Sbjct: 4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
DI + +D++L+++ A I S + ++ L+ G G L+
Sbjct: 64 SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALE 114
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 281 | |||
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 100.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 100.0 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.78 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.72 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.66 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.66 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 99.63 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.63 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.63 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.62 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.61 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.58 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.55 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.54 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.51 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.43 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.42 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.37 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.34 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.3 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.26 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.18 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.14 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.1 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.02 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.96 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.88 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.77 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.74 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.71 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.51 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.39 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.29 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.19 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.15 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.05 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.05 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.99 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 97.95 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.89 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.85 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.83 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.82 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.78 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.78 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.78 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.7 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.58 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.57 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.55 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.54 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.51 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.48 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.48 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.44 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.39 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.39 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.3 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.29 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.28 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.27 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.25 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.25 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.24 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.22 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.17 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.13 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.12 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.11 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.1 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.07 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 97.07 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.06 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.05 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.04 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.04 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.99 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.99 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.97 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.97 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.95 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.91 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.91 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.87 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.87 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.87 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.79 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.78 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.78 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.76 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.75 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.73 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.7 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.7 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.67 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.63 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.62 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.53 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.49 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.48 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 96.46 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.41 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.37 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.35 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.33 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.32 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.28 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.27 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.19 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.14 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.06 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.02 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.95 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.95 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.86 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.82 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.58 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.56 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.48 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 95.47 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 95.47 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 95.41 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.38 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.38 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.38 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.35 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.35 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.35 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.31 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.26 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.15 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.13 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.07 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.96 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 94.93 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 94.88 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.84 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.79 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 94.72 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 94.69 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.62 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.6 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.6 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 94.54 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 94.52 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 94.51 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 94.37 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.36 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.33 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.32 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.31 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 94.3 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 94.27 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 94.26 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.24 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.18 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 94.14 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.13 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.09 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 94.07 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.01 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.01 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 93.99 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 93.95 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 93.95 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 93.94 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 93.92 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.92 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 93.9 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.86 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.86 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 93.84 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.69 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 93.54 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.39 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 93.26 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.23 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.19 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 93.16 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 93.12 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.09 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.06 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 93.04 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 92.95 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 92.94 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 92.91 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 92.86 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 92.72 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.46 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 92.46 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.45 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.32 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 92.3 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.28 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 92.24 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.21 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 91.99 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 91.83 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 91.81 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 91.79 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 91.68 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 91.61 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 91.6 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 91.53 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 91.38 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 91.38 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.26 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.24 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 91.15 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 91.1 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.04 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.0 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.98 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 90.98 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 90.94 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.91 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 90.87 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.83 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.81 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 90.77 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 90.73 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 90.73 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.61 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.06 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 89.9 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 89.87 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 89.69 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 89.66 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 89.6 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 89.47 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 89.45 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.22 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 89.21 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.15 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 89.09 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 89.06 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 88.91 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 88.65 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 88.52 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 88.51 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 88.37 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 88.18 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.85 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 87.79 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 87.79 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 87.38 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 87.28 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 87.03 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 86.98 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 86.94 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 86.88 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 86.73 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.63 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 86.63 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 86.56 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.51 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.26 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 86.16 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 85.55 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 85.26 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 84.44 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 84.2 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 83.87 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.81 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 83.66 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 83.47 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 82.59 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.12 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 81.89 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 81.38 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 81.33 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 81.04 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 80.97 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 80.63 | |
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 80.39 | |
| d2nv0a1 | 195 | Hypothetical protein YaaE {Bacillus subtilis [TaxI | 80.31 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=3.4e-52 Score=371.50 Aligned_cols=212 Identities=78% Similarity=1.222 Sum_probs=196.8
Q ss_pred ccccccccchhhhhhhhhcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
+.+|+|++++|+++++++.+..|+++++|||.|+++...|+|+|+|+|||||+||.++|+|||++-.+.++|.+|+++.|
T Consensus 2 ~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr 81 (226)
T d1qmga2 2 ATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLR 81 (226)
T ss_dssp CSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeC
Confidence 56899999999999999999999999999999998879999999999999999999999999997333334678999999
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCC
Q 023490 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228 (281)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~ 228 (281)
+++++++.|++.|+.+.+.+..+.+|++++||+|++++||..+.++++++.++||+|+.|..+|||++.+.+..+..+|+
T Consensus 82 ~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~ 161 (226)
T d1qmga2 82 KGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 161 (226)
T ss_dssp TTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCCT
T ss_pred CCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccCC
Confidence 99999999999999754555568999999999999999999999999999999999999999999999887765567899
Q ss_pred CceEEEeccCCCChhhHHhhhhCccccCCCceeEEEeeeCCCcchhhhhhcc
Q 023490 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQVLSEPLFHLCVGL 280 (281)
Q Consensus 229 ~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~av~~d~~g~a~~~~~~~ 280 (281)
|++|+.|+|++||+.||+.|++||.+||+|+||+||||||+||+|+|+||+|
T Consensus 162 dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alay 213 (226)
T d1qmga2 162 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGW 213 (226)
T ss_dssp TSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHH
T ss_pred CceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.2e-39 Score=278.01 Aligned_cols=155 Identities=34% Similarity=0.539 Sum_probs=147.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.-|++ |+|+|||||++|.+.|+|||++ |++|+++.|+++++++.|++.||.+ .+++|++++||+|+++
T Consensus 12 ~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~v-----~~~~eA~~~aDiim~L 79 (182)
T d1np3a2 12 SIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV-----ADVKTAVAAADVVMIL 79 (182)
T ss_dssp HHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE-----ECHHHHHHTCSEEEEC
T ss_pred HHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhcccc-----ccHHHHhhhcCeeeee
Confidence 56889 9999999999999999999999 9999999999998999999999994 6999999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhhhCccccCCCceeEEE
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~~g~~~~~~g~~~~~a 264 (281)
+|+..+.++++ ++.++||+|+.|..+|||++.+-+ +.+|++++|+.|+|++||+.||+.|++| +|+|++||
T Consensus 80 ~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~~---I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~A 151 (182)
T d1np3a2 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQ---VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIA 151 (182)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTTS---SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEEE
T ss_pred cchHHHHHHHHHhhhhhcCCCcEEEEeccceEEeee---eecCCCCceEeeccccccchhHHHhhcC-----CccceEEE
Confidence 99999999997 799999999999999999986643 5789999999999999999999999998 69999999
Q ss_pred eeeCCCcchhhhhhcc
Q 023490 265 VHQVLSEPLFHLCVGL 280 (281)
Q Consensus 265 v~~d~~g~a~~~~~~~ 280 (281)
||||+||+|+|+||+|
T Consensus 152 V~qD~sg~A~~~alay 167 (182)
T d1np3a2 152 IYQDASGNAKNVALSY 167 (182)
T ss_dssp EEECSSSCHHHHHHHH
T ss_pred EEeCCCccHHHHHHHH
Confidence 9999999999999998
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.78 E-value=9.6e-20 Score=150.69 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=94.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
|+|||||+|+||.+++++|.+. |+++++++|..++..+.+++.|+.. ..+++|++++||+|+|++||+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence 6899999999999999999988 9999999887655555566778764 56899999999999999998765
Q ss_pred HHHHHHHHhcCCCCcEE-EEeCCcchhhhhhcccCCCCCceEEEeccCCCC
Q 023490 192 ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG 241 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaIL-i~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg 241 (281)
. ++++.++++++| .+++|+++..+++ .++.+.+++|+|||+|.
T Consensus 71 ~----~vl~~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~ 114 (152)
T d2ahra2 71 E----TVLKPLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNA 114 (152)
T ss_dssp H----HHHTTSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGG
T ss_pred H----HHhhhcccceeEecccccccHHHHHh---hhcccccchhhccchhh
Confidence 4 445667888865 5889999999887 56778899999999974
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.72 E-value=3.2e-18 Score=140.63 Aligned_cols=114 Identities=15% Similarity=0.248 Sum_probs=87.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|+|||||+|+||.+++++|.+. | ++|.+++|..++..+.+++.|+.. ..+. +.++++|+|||++||+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence 6899999999999999999887 6 788888887554445566678764 3344 45788999999999876
Q ss_pred HHHHHHHHHhcCCCCcE-EEEeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 191 QADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaI-Li~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
..++++++. +.+++ |++++|+++..+++ .++.+.+++|+|||+|..
T Consensus 70 ~~~v~~~l~---~~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~ 116 (152)
T d1yqga2 70 MEAACKNIR---TNGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGK 116 (152)
T ss_dssp HHHHHTTCC---CTTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGG
T ss_pred HHHhHHHHh---hcccEEeecccCCCHHHHHH---HhCcCcceEeecccchhH
Confidence 555555432 23454 45789999999987 667778899999999863
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.66 E-value=2.1e-17 Score=142.50 Aligned_cols=140 Identities=18% Similarity=0.181 Sum_probs=103.7
Q ss_pred hhhhcCCCcc----cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC
Q 023490 92 FIVRGGRDLF----KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (281)
Q Consensus 92 ~~vr~G~W~f----~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~ 167 (281)
..+|+|+|.. .+...++.| ++|||||+|+||+.+|+.++.+ |++|+++++......... ..+...
T Consensus 25 ~~~r~g~w~~~~~~~~~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~~-~~~~~~--- 93 (191)
T d1gdha1 25 KMIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDEA-SYQATF--- 93 (191)
T ss_dssp HHHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHHH-HHTCEE---
T ss_pred HHHHcCCCCcCCccccccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchhh-cccccc---
Confidence 3499999952 223478999 9999999999999999999999 999988877644333333 333332
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEeccC
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
..++++++++||+|++|+|.++.++ +++ +.+..||+|++|| .+.|-.+ ..+++ +.+....+||+.-.|+
T Consensus 94 -~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-g~i~~a~lDV~~~EP~ 171 (191)
T d1gdha1 94 -HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA-GRLAYAGFDVFAGEPN 171 (191)
T ss_dssp -CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCTTTTS
T ss_pred -cCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHc-CCceEEEEECCCCCCC
Confidence 4589999999999999999988875 887 8999999999998 5677443 33443 3333456777777883
Q ss_pred CCChhhH
Q 023490 239 GMGPSVR 245 (281)
Q Consensus 239 tpg~~vr 245 (281)
+.++++
T Consensus 172 -~~~~l~ 177 (191)
T d1gdha1 172 -INEGYY 177 (191)
T ss_dssp -CCTTGG
T ss_pred -CCchHH
Confidence 445543
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=2e-17 Score=141.50 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=106.5
Q ss_pred cchhhhhcCCCccc-ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC
Q 023490 89 RDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (281)
Q Consensus 89 ~~e~~vr~G~W~f~-~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~ 167 (281)
+++. +++|.|... +...++.| +++||||+|+||+.+|+.++.+ ||+|+++++... .+.....++.
T Consensus 23 ~~~~-~~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~~--~~~~~~~~~~---- 88 (184)
T d1ygya1 23 ADAS-LREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYVS--PARAAQLGIE---- 88 (184)
T ss_dssp HHHH-HHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSC--HHHHHHHTCE----
T ss_pred HHHH-HHhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCCC--hhHHhhcCce----
Confidence 3444 899999643 23478999 9999999999999999999998 999988876643 2344455665
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEeccC
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
..+++|++++||+|++|+|.++.++ +++ +.+..||++++|| .+.|-.+ ..+++ +.+....+||+.-.|.
T Consensus 89 -~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~-~~i~~a~lDV~~~EP~ 166 (184)
T d1ygya1 89 -LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITG-GHVRAAGLDVFATEPC 166 (184)
T ss_dssp -ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT-SSEEEEEESSCSSSSC
T ss_pred -eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhc-CcEeEEEEeCCCCCCC
Confidence 4589999999999999999988876 787 8999999999998 5667443 23443 3333456778888886
Q ss_pred CCChhhH
Q 023490 239 GMGPSVR 245 (281)
Q Consensus 239 tpg~~vr 245 (281)
|.++++
T Consensus 167 -~~~~l~ 172 (184)
T d1ygya1 167 -TDSPLF 172 (184)
T ss_dssp -SCCGGG
T ss_pred -CCchHh
Confidence 455554
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.63 E-value=1.4e-16 Score=137.61 Aligned_cols=136 Identities=20% Similarity=0.165 Sum_probs=101.9
Q ss_pred cchhhhhcCCCccc--------ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC
Q 023490 89 RDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (281)
Q Consensus 89 ~~e~~vr~G~W~f~--------~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~ 160 (281)
+++. +|+|+|... ....+|.| ++|||||+|+||+.+|+.++.+ ||+|+++++..... .....
T Consensus 21 ~~~~-~~~g~w~~~~~~~~~~~~~~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~--~~~~~ 90 (193)
T d1mx3a1 21 LHQA-LREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--VERAL 90 (193)
T ss_dssp HHHH-HHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--HHHHH
T ss_pred HHHH-HHcCCcccccccccccccCceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCccccc--chhhh
Confidence 3444 999999531 23588999 9999999999999999999999 99999888764432 23344
Q ss_pred CceecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCce
Q 023490 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIG 231 (281)
Q Consensus 161 G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~ 231 (281)
++.. ..+++|++++||+|++|+|.+..++ +++ +.+..||++++|| .+.|-.+ ..+++ +.+....+|
T Consensus 91 ~~~~----~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-~~i~~a~lD 165 (193)
T d1mx3a1 91 GLQR----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE-GRIRGAALD 165 (193)
T ss_dssp TCEE----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEEEEES
T ss_pred cccc----ccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHc-CCceEEEEE
Confidence 5553 4589999999999999999988776 777 8999999999998 5666433 23443 223234566
Q ss_pred EEEeccCC
Q 023490 232 VIAVCPKG 239 (281)
Q Consensus 232 VIrvmPnt 239 (281)
|+.-.|..
T Consensus 166 V~~~EP~~ 173 (193)
T d1mx3a1 166 VHESEPFS 173 (193)
T ss_dssp CCSSSSCC
T ss_pred cCCCCCCC
Confidence 77667754
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.63 E-value=7.9e-17 Score=137.71 Aligned_cols=145 Identities=16% Similarity=0.076 Sum_probs=109.5
Q ss_pred cccchhhhhcCCCccc---ccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCce
Q 023490 87 ANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (281)
Q Consensus 87 ~~~~e~~vr~G~W~f~---~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~ 163 (281)
..+++. +++|+|... ....+|.| ++|||||+|+||+.+|+.++.+ |++|.++++... ........++.
T Consensus 19 ~~~~~~-~~~g~w~~~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~-~~~~~~~~~~~ 89 (188)
T d2naca1 19 LPSHEW-ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHRL-PESVEKELNLT 89 (188)
T ss_dssp HHHHHH-HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCC-CHHHHHHHTCE
T ss_pred HHHHHH-HHhCCCCCcccCCcceeccc-cceeeccccccchhhhhhhhcc------CceEEEEeeccc-ccccccccccc
Confidence 334444 889999631 12478999 9999999999999999999999 999988877643 23444455555
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEE
Q 023490 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIA 234 (281)
Q Consensus 164 ~~~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIr 234 (281)
. ..+++|++++||+|++|+|.++.++ +++ +.+..||+|++|| .+.|-.+ ..+++ +......+||+.
T Consensus 90 ~----~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~-g~i~ga~lDV~~ 164 (188)
T d2naca1 90 W----HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES-GRLAGYAGDVWF 164 (188)
T ss_dssp E----CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT-TSEEEEEESCCS
T ss_pred c----cCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhC-CCceeEEEeCCC
Confidence 3 5689999999999999999988875 787 8999999999998 5666333 33443 333234567777
Q ss_pred eccCCCChhhH
Q 023490 235 VCPKGMGPSVR 245 (281)
Q Consensus 235 vmPntpg~~vr 245 (281)
-.|..++.+++
T Consensus 165 ~EP~~~~~~l~ 175 (188)
T d2naca1 165 PQPAPKDHPWR 175 (188)
T ss_dssp SSSCCTTCGGG
T ss_pred CCCCCCCChHH
Confidence 78888887775
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.63 E-value=2.4e-16 Score=134.73 Aligned_cols=109 Identities=11% Similarity=0.114 Sum_probs=88.1
Q ss_pred hcccchhhhhcCCCcccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec
Q 023490 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (281)
Q Consensus 86 ~~~~~e~~vr~G~W~f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~ 165 (281)
+..+.+. +++|+|.......+|.| ++|||||+|.||+.+|+.++.+ |++|+++++...+ .....
T Consensus 19 i~~~~~~-~~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~~- 82 (181)
T d1qp8a1 19 IIQYGEK-MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWRF- 82 (181)
T ss_dssp HHHHHHH-HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSCC-
T ss_pred HHHHHHH-HHcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------cceee-
Confidence 3344555 89999975544467999 9999999999999999999999 9999988876432 11221
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEEE-eCC
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHG 213 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi~-aaG 213 (281)
..+++|++++||+|++|+|.++.+. +++ +.+..||++++||. +.|
T Consensus 83 ---~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG 130 (181)
T d1qp8a1 83 ---TNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRA 130 (181)
T ss_dssp ---BSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCG
T ss_pred ---eechhhhhhccchhhcccccccccccccccceeeeccccceEEecccc
Confidence 3589999999999999999988875 777 89999999999985 556
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.62 E-value=3.9e-16 Score=128.57 Aligned_cols=113 Identities=19% Similarity=0.237 Sum_probs=87.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
|+|||||+|+||.++|++|++. |++|..++|. .+..+.+++.|+..+ ..+..|+++++|+||+++|+...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~~~d~~-~~~~~~a~~~~~~~~---~~~~~~~~~~~DiIilavp~~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQ-QSTCEKAVERQLVDE---AGQDLSLLQTAKIIFLCTPIQLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTSCSE---EESCGGGGTTCSEEEECSCHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEECC-chHHHHHHHhhccce---eeeecccccccccccccCcHhhh
Confidence 6899999999999999999999 9999877665 455677888886521 33556789999999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEecc
Q 023490 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCP 237 (281)
Q Consensus 192 ~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmP 237 (281)
.++++++.+.++++++|++.++.+........... .+++..||
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~---~~~~~~h~ 113 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW---SGFIGGHP 113 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS---TTCEEEEE
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHhh---ccccccee
Confidence 88999999999999999988877643222110121 24667777
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.61 E-value=4.4e-16 Score=134.87 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=98.7
Q ss_pred cchhhhhcCCCcccc-cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC
Q 023490 89 RDEFIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (281)
Q Consensus 89 ~~e~~vr~G~W~f~~-~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~ 167 (281)
+++. +++|.|.+.. ...+|.| ++|||||+|+||+.+|+.++.+ ||+|+++++.... .....++.
T Consensus 22 ~~~~-~~~~~~~w~~~~g~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~---- 86 (197)
T d1j4aa1 22 MDEK-VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY---- 86 (197)
T ss_dssp HHHH-HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB----
T ss_pred HHHH-HHhCCCCcCCCcCccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee----
Confidence 3444 7888776432 2378999 9999999999999999999999 9999888765432 22334454
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch------hhhhhcccCCCCCceEEEeccC
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l------~~l~~~~~~~~~~i~VIrvmPn 238 (281)
..+++|++++||+|++|+|.+..++ +++ +.+..||++++|| .+.|-.+ ..+++ +.+....+||+...|+
T Consensus 87 -~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-~~i~~a~lDV~~~Ep~ 164 (197)
T d1j4aa1 87 -VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDS-GKIFGYAMDVYEGEVG 164 (197)
T ss_dssp -CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCTTCTT
T ss_pred -eccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhc-ccchheeeeccccCCc
Confidence 4589999999999999999988775 776 8999999999998 4666443 23443 2232345666666665
Q ss_pred C
Q 023490 239 G 239 (281)
Q Consensus 239 t 239 (281)
.
T Consensus 165 ~ 165 (197)
T d1j4aa1 165 I 165 (197)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.58 E-value=1.4e-15 Score=125.11 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=90.0
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hcCcCCEEEEccC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLIS 187 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E-~l~~ADVViLavP 187 (281)
||+|+|||+|+||.++|++|++. |+ +|..+ +++.+..+.+++.|+..+ ...+.++ ...++|+|++++|
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I~~~-D~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~dlIila~p 71 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGY-DINPESISKAVDLGIIDE--GTTSIAKVEDFSPDFVMLSSP 71 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEE-CSCHHHHHHHHHTTSCSE--EESCGGGGGGTCCSEEEECSC
T ss_pred CCEEEEEccCHHHHHHHHHHHhc------CCCeEEEEE-ECChHHHHHHHHhhcchh--hhhhhhhhhccccccccccCC
Confidence 68999999999999999999998 75 55444 455667788888887521 1234443 4468999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccCCCChh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPS 243 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPntpg~~ 243 (281)
+....++++++.++++++++|+++++++.. .++. .++ .++|..|| +.|++
T Consensus 72 ~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~---~~~--~~~i~~hP-m~G~e 124 (171)
T d2g5ca2 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILG--KRFVGGHP-IAGTE 124 (171)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHG--GGEECEEE-ECCCS
T ss_pred chhhhhhhhhhhccccccccccccccccHHHHHHHHH---hhc--cccccccc-ccccc
Confidence 999989999999999999999999887643 3333 333 36999999 55553
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.55 E-value=7.5e-16 Score=133.16 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=87.4
Q ss_pred cchhhhhcCCCcc--cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecC
Q 023490 89 RDEFIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (281)
Q Consensus 89 ~~e~~vr~G~W~f--~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~ 166 (281)
+.+. +++|.|.. .+...+|.| ++|||||+|+||+.+|+.++.+ ||+|+++++..... ....+.
T Consensus 23 ~~~~-~~~g~w~~~~~~~~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~----~~~~~~--- 87 (199)
T d1dxya1 23 VQAQ-LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG----DHPDFD--- 87 (199)
T ss_dssp HHHH-HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS----CCTTCE---
T ss_pred HHHH-HHhCCCCcccCcccccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchh----hhcchh---
Confidence 3434 88999953 222379999 9999999999999999999999 99998888764321 112233
Q ss_pred CCcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcc
Q 023490 167 GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFL 215 (281)
Q Consensus 167 ~t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~ 215 (281)
..++++++++||+|++|+|.+..++ +++ +.+..||++++|| .+.|-.
T Consensus 88 --~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~v 137 (199)
T d1dxya1 88 --YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNL 137 (199)
T ss_dssp --ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTS
T ss_pred --HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhh
Confidence 4589999999999999999988876 777 8999999999998 566643
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=1.4e-15 Score=129.86 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=94.3
Q ss_pred cchhhhhcCCCcc-cccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC
Q 023490 89 RDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG 167 (281)
Q Consensus 89 ~~e~~vr~G~W~f-~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~ 167 (281)
+++. +++|.|.. .....+|.| ++|||||+|.||+.+|+.++.+ |++|+++++...... .....
T Consensus 23 ~~~~-~~~~~w~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~-----~~~~~--- 86 (188)
T d1sc6a1 23 ANAK-AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLPL-----GNATQ--- 86 (188)
T ss_dssp HHHH-HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCC-----TTCEE---
T ss_pred HHHH-HHhCCCcccccccccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccchh-----hhhhh---
Confidence 3444 88899964 223468999 9999999999999999999999 999998887643211 12221
Q ss_pred CcCCHHhhcCcCCEEEEccCChhHHH-HHH-HHHhcCCCCcEEE-EeCCcch--h----hhhhcccCCCCCceEEEeccC
Q 023490 168 TLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL--G----HLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 168 t~~~~~E~l~~ADVViLavP~~~~~~-vl~-ei~~~mKpgaILi-~aaG~~l--~----~l~~~~~~~~~~i~VIrvmPn 238 (281)
..+++|++++||+|++|+|.+..+. +++ +.++.||++++|| .+.|-.+ + .+++ +.....-+||+.-.|.
T Consensus 87 -~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~-~~~~~a~lDV~~~EP~ 164 (188)
T d1sc6a1 87 -VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS-KHLAGAAIDVFPTEPA 164 (188)
T ss_dssp -CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT-TSEEEEEEEC------
T ss_pred -hhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHc-CCceEEEEecCCCCCC
Confidence 4589999999999999999988875 777 8999999999998 5667332 2 2343 2333456677777887
Q ss_pred CCChhh
Q 023490 239 GMGPSV 244 (281)
Q Consensus 239 tpg~~v 244 (281)
....+.
T Consensus 165 ~~~~~~ 170 (188)
T d1sc6a1 165 TNSDPF 170 (188)
T ss_dssp ---CTT
T ss_pred CcCCcc
Confidence 655444
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.51 E-value=3.1e-14 Score=117.47 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=88.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~ 191 (281)
|||||||+|+||.++|++|.+. |++|.+++|..+ ..+...+.+... ..++.|+++++|+|++++|+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d~~~~-~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~ 69 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRNPE-AIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 69 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC------CCeEEEEeCCcc-hhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence 6899999999999999999999 999998887643 455666777765 67899999999999999998777
Q ss_pred HH-HH---HHHHhcCCCCcEEEEeCCcchhhhhhcc-cCCCCCceEEEec
Q 023490 192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVC 236 (281)
Q Consensus 192 ~~-vl---~ei~~~mKpgaILi~aaG~~l~~l~~~~-~~~~~~i~VIrvm 236 (281)
.+ ++ +.+++.+++|++|++.........++.. .....+++++...
T Consensus 70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (161)
T d1vpda2 70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAP 119 (161)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceeccc
Confidence 65 65 3589999999999988776643221111 1224577888763
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.43 E-value=5.3e-13 Score=110.20 Aligned_cols=122 Identities=18% Similarity=0.281 Sum_probs=92.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|++|||||+|+||.++|++|.+. |++|.+++|... ..+.+...+... ..++.|+++++|+|++++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~~~-~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~ 69 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQS-AVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 69 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECchh-hhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence 68999999999999999999999 999999987754 455667777775 5689999999999999999987
Q ss_pred HHH-HHH---HHHhcCCCCcEEEEeCCcchhhhhhcccCC-CCCceEEEeccCCCChhh
Q 023490 191 QAD-NYE---KIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 191 ~~~-vl~---ei~~~mKpgaILi~aaG~~l~~l~~~~~~~-~~~i~VIrvmPntpg~~v 244 (281)
..+ ++. .+.+.+++|++|++..........+....+ ..+++++. +|-.-|++-
T Consensus 70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~d-apv~Gg~~~ 127 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLD-APVSGGTAG 127 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEESCHHH
T ss_pred hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEe-cccccCccc
Confidence 655 554 478899999999998877653211111122 45788886 565555543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.42 E-value=4.5e-13 Score=108.64 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=86.5
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
|++|+||| +|+||+++|++|++. |++|.++++.... +.++.++++|++++++|..
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~~------------------~~~~~~~~~~~v~~~~~~~ 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDWA------------------VAESILANADVVIVSVPIN 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEeccccccc------------------ccchhhhhccccccccchh
Confidence 58999999 999999999999999 9999998876321 3456788999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhh
Q 023490 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (281)
Q Consensus 190 ~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~v 244 (281)
....++.++.+.++++++|++.+.++....+......+ .++|..|| .-||+.
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP-~~Gp~~ 116 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHP-MFGADI 116 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEE-CSCTTC
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEecc-cCCCcc
Confidence 99999999999999999999999988543322111333 36899999 677754
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.37 E-value=1.5e-12 Score=106.00 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=78.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~-~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|||||||+|+||.++|++|++. |++|+++++...+.. ..+...++. .+++|+++++|+|++++|+..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~diIi~~v~~~~ 68 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhccccc------ccHHHHHhhcCeEEEEecCch
Confidence 6899999999999999999999 999988887654332 233444444 378899999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcch---hhhhhcccCCCCCceEEEe
Q 023490 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG~~l---~~l~~~~~~~~~~i~VIrv 235 (281)
..+++.+..+.+ +.++++...... ..+.+ .++ +..++.+
T Consensus 69 ~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~---~~~-~~~~~d~ 110 (152)
T d1i36a2 69 ALGAARRAGRHV--RGIYVDINNISPETVRMASS---LIE-KGGFVDA 110 (152)
T ss_dssp HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHH---HCS-SSEEEEE
T ss_pred HHHHHHhhcccC--CceeeccCcCCHHHHHHHHH---HHh-ccCCCcc
Confidence 888888777766 567877766553 34443 443 3456544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.34 E-value=3.5e-12 Score=104.33 Aligned_cols=97 Identities=20% Similarity=0.192 Sum_probs=78.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-----------CCCcCCHHhhcCcCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD 180 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-----------~~t~~~~~E~l~~AD 180 (281)
|||+|||.|+||.++|..|... |++|.+++|..+ ..+...+.+.... .....++.|+++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDAQ-RIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 8999999999999999999999 999999988643 3444444432110 001347889999999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+|++++|...+..+++++.++++++++|+++.|..
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~ 109 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILNPGAT 109 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCC
Confidence 99999999999899999999999999998887754
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=1.1e-13 Score=112.03 Aligned_cols=93 Identities=13% Similarity=0.045 Sum_probs=63.0
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHHH
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~~ 193 (281)
|||||+|+||.+++++|++. +..+.+++|..++..+.+++.+.. ..+++|+++++|+|+|++||....+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence 79999999999999999765 443457888766555555555544 4578899999999999999987666
Q ss_pred HHHHHHhcCCCCcEEEE-eCCcchhhhh
Q 023490 194 NYEKIFSCMKPNSILGL-SHGFLLGHLQ 220 (281)
Q Consensus 194 vl~ei~~~mKpgaILi~-aaG~~l~~l~ 220 (281)
+++++. +++++|+. +++.....++
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~ 95 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFK 95 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGC
T ss_pred HHhhhc---ccceeeeecccchhhhhhh
Confidence 655431 46788775 4555555554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.26 E-value=6.4e-12 Score=104.69 Aligned_cols=117 Identities=16% Similarity=0.118 Sum_probs=83.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec----CCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~----~~t~~~~~E~l~~ADVViLavP 187 (281)
++|||||+|+||.+||++|.+. |++|.+++|..++ .+...+.+.... .....++.+++..+|++++++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence 6899999999999999999999 9999999888654 333434332100 0113356688999999999999
Q ss_pred ChhHH-HHHHHHHhcCCCCcEEEEeCCcchhhhhhc-ccCCCCCceEEEe
Q 023490 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLGHLQSI-GLDFPKNIGVIAV 235 (281)
Q Consensus 188 ~~~~~-~vl~ei~~~mKpgaILi~aaG~~l~~l~~~-~~~~~~~i~VIrv 235 (281)
..... ++++.+++.+++|+++++.+........+. ...-..++.++..
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~lda 125 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS 125 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceecc
Confidence 97765 577899999999999998877664321110 1122356777753
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.1e-11 Score=102.92 Aligned_cols=94 Identities=19% Similarity=0.158 Sum_probs=80.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
..|.| |+++|||+|.+|+.+|+.++.+ |++|++++..+-+ .-+|...|+.. .+++|+++.+|+|+++
T Consensus 20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~dp~~-al~A~~dG~~v-----~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEIDPIN-ALQAAMEGYEV-----TTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHH-HHHHHHTTCEE-----CCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecccch-hHHhhcCceEe-----eehhhhhhhccEEEec
Confidence 45899 9999999999999999999999 9999999887543 33566789984 5899999999999999
Q ss_pred cCChhHHHHHH-HHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~-ei~~~mKpgaILi~aaG~~ 215 (281)
+.... ++. +.++.||+|++|..++.|.
T Consensus 87 TGn~~---vI~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCID---IILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp SSCSC---SBCHHHHTTCCTTEEEEECSSST
T ss_pred CCCcc---chhHHHHHhccCCeEEEEecccc
Confidence 88533 565 8899999999999888776
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.14 E-value=1.1e-10 Score=95.22 Aligned_cols=110 Identities=11% Similarity=0.108 Sum_probs=79.2
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChhHH
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~~~ 192 (281)
||||||+|+||.+||++|.+. |+. ++++|..++..+...+.+... +..+.+.++|++++++|.....
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~------g~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~v 68 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR------FPT-LVWNRTFEKALRHQEEFGSEA------VPLERVAEARVIFTCLPTTREV 68 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT------SCE-EEECSSTHHHHHHHHHHCCEE------CCGGGGGGCSEEEECCSSHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhC------CCE-EEEeCCHHHHHHHHHHcCCcc------cccccccceeEEEecccchhhh
Confidence 799999999999999999988 875 468888766555555555542 4456777899999999997765
Q ss_pred H-HHHHHHhcCCCCcEEEEeCCcchhhhhhcccCC-CCCceEEEe
Q 023490 193 D-NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAV 235 (281)
Q Consensus 193 ~-vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~-~~~i~VIrv 235 (281)
. ..+.+++.++++.++++..-......++....+ ..++.++..
T Consensus 69 ~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~lda 113 (156)
T d2cvza2 69 YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA 113 (156)
T ss_dssp HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC
T ss_pred hhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEec
Confidence 4 556899999999999987766543221110011 346666643
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.10 E-value=1.7e-10 Score=96.54 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=73.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHHCCceec---------CCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE---------NGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~~G~~~~---------~~t~~~~~E~l~~ADV 181 (281)
|+|+|||.|++|.++|..|.+. |++|.++.|...+ ..+.-.+...... -....+++++++++|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~ 74 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence 7999999999999999999999 9999988774322 1121111111000 0013477899999999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
|++++|.+...++++++.+++++..+|+.+.|.
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~ 107 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred hhcccchhhhHHHHHhhccccccceecccccCc
Confidence 999999999999999999999998888888876
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.02 E-value=6e-10 Score=93.86 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=81.1
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
-|.| |++.|+|||..|+.+|+.++.. |.+|++.+..+-+ .-+|.-.||. ..+++|+++.+|+|+.+|
T Consensus 20 ~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~DPi~-alqA~mdGf~-----v~~~~~a~~~aDi~vTaT 86 (163)
T d1v8ba1 20 LISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEIDPIC-AIQAVMEGFN-----VVTLDEIVDKGDFFITCT 86 (163)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSCHHH-HHHHHTTTCE-----ECCHHHHTTTCSEEEECC
T ss_pred eecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecCchh-hHHHHhcCCc-----cCchhHccccCcEEEEcC
Confidence 3899 9999999999999999999999 9999999877543 3356678998 469999999999999999
Q ss_pred CChhHHHHHH-HHHhcCCCCcEEEEeCCcch
Q 023490 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFLL 216 (281)
Q Consensus 187 P~~~~~~vl~-ei~~~mKpgaILi~aaG~~l 216 (281)
.... ++. +.+..||+|+||..++.|..
T Consensus 87 Gn~~---vI~~~h~~~MKdgaIl~N~GHfd~ 114 (163)
T d1v8ba1 87 GNVD---VIKLEHLLKMKNNAVVGNIGHFDD 114 (163)
T ss_dssp SSSS---SBCHHHHTTCCTTCEEEECSSTTT
T ss_pred CCCc---cccHHHHHHhhCCeEEEeccccch
Confidence 9754 555 78999999999998888764
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.96 E-value=1.1e-09 Score=90.42 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=78.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCcee------cCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------ENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~------~~~t~~~~~E~l~~ADVViLa 185 (281)
|+|||||+|+||.++|++|.+. |++|.+++|..++..+..++.+... ......++...+..++.+++.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALIL 75 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEe
Confidence 7899999999999999999999 9999999887554333333322110 000111234566788999999
Q ss_pred cCChhHH-HHHHHHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEe
Q 023490 186 ISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAV 235 (281)
Q Consensus 186 vP~~~~~-~vl~ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrv 235 (281)
+++.... .+++++...+++++++++..-.... .+.+ ..-..++.++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~--~l~~~~~~~lda 127 (178)
T d1pgja2 76 VQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ--QLEAAGLRFLGM 127 (178)
T ss_dssp CCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH--HHHTTTCEEEEE
T ss_pred ecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH--HHhhcceeEecc
Confidence 9987765 4888899999999999887655432 2221 111456777764
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.1e-08 Score=86.75 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=87.5
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----------HHCCceec--------------
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------------- 165 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----------~~~G~~~~-------------- 165 (281)
+++|+|||.|.||.++|..+... |++|+++++..+ ..+.+ .+.+....
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~~-~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTED-ILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECChH-HHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 58999999999999999999999 999999887642 11111 11122100
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
-....+..++++++|+|+=++|..-.. +++.++-+.++++++|. ...++.+..+.. .....-.++..|+-.|.+
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence 001457788999999999999987654 48899999999999885 667788877775 222334677777755543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=8.9e-09 Score=82.30 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=71.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~---~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
|||+|||.|.||..+|..|.+. |++|.+..|...+... ....+. ........+..+.+..+|+|++++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhh-hccccCCccccccccccchhhhhcccceEEEeecc
Confidence 7999999999999999999999 9999988876532110 000010 00000022455778899999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE-EeCCcch
Q 023490 189 AAQADNYEKIFSCMKPNSILG-LSHGFLL 216 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi-~aaG~~l 216 (281)
....+.++++.+++.++++|+ ...|+..
T Consensus 74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~ 102 (167)
T d1ks9a2 74 WQVSDAVKSLASTLPVTTPILLIHNGMGT 102 (167)
T ss_dssp GGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred cchHHHHHhhccccCcccEEeeccCcccH
Confidence 988889999999999888654 6678764
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.74 E-value=1e-08 Score=86.75 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=69.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC--------ceecC--CCcCCHHhhcCcCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTEEN--GTLGDIYETISGSD 180 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G--------~~~~~--~t~~~~~E~l~~AD 180 (281)
|++|+|||.|++|.++|..|.+. |++|.++.|..+ ..+.-.+.+ +.... ....+++++++++|
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~~~-~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad 79 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAE 79 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCS
T ss_pred eceEEEECCCHHHHHHHHHHHHc------CCeEEEEEecHH-HHHHHhhcccccccccccccccccccchhhhhccCCCC
Confidence 58899999999999999999998 999999887633 222221111 11000 01357899999999
Q ss_pred EEEEccCChhHHHHHHHHHhc-----CCCCc-EEEEeCCcch
Q 023490 181 LVLLLISDAAQADNYEKIFSC-----MKPNS-ILGLSHGFLL 216 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~-----mKpga-ILi~aaG~~l 216 (281)
+|++++|.+...++++++.++ ++++. +|+.+.|+..
T Consensus 80 ~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~ 121 (189)
T d1n1ea2 80 IILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER 121 (189)
T ss_dssp CEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCcc
Confidence 999999988887888765543 34555 4556788753
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.71 E-value=1.8e-08 Score=84.79 Aligned_cols=123 Identities=12% Similarity=0.100 Sum_probs=84.3
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-----------CCceecC--------CCcC
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN--------GTLG 170 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-----------~G~~~~~--------~t~~ 170 (281)
.+++|+|||.|.||.++|..+... |++|+++++..+ ..+.+.+ .+..... -...
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 75 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEH-GIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT 75 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECCHH-HHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc
Confidence 368999999999999999999998 999998887632 2222211 1100000 0011
Q ss_pred CHHhhcCcCCEEEEccCChhHH--HHHHHHHhcCCCCcEEE-EeCCcchhhhhhcccCCCCCceEEEeccCCCCh
Q 023490 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (281)
Q Consensus 171 ~~~E~l~~ADVViLavP~~~~~--~vl~ei~~~mKpgaILi-~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~ 242 (281)
+..+.+.++|+|+-++|.+-.. +++.++-+..+++++|. ...++.+..+.. .+...-.++..|+=.|.+
T Consensus 76 ~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~ 147 (186)
T d1wdka3 76 LSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVH 147 (186)
T ss_dssp SSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTT
T ss_pred cccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCcc
Confidence 2234588999999999987654 38889999999999984 678888887775 222334677777754443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.51 E-value=2.2e-07 Score=76.55 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=73.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
..|++ ++|.|||.|.||+.+++.|... |. ++.+++|..++..+.+.+.|... ..+.++.+.+.++|+||.
T Consensus 20 ~~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~ 90 (159)
T d1gpja2 20 GSLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVS 90 (159)
T ss_dssp SCCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEE
T ss_pred CCccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEE
Confidence 36889 9999999999999999999998 87 68899988666667777777553 235678888999999999
Q ss_pred ccCChh--H-HHHHHHHHhcCCC--CcEEEEe
Q 023490 185 LISDAA--Q-ADNYEKIFSCMKP--NSILGLS 211 (281)
Q Consensus 185 avP~~~--~-~~vl~ei~~~mKp--gaILi~a 211 (281)
+++... . .+.++.....-+. ..+++|.
T Consensus 91 atss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 91 ATAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp CCSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred ecCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 998543 2 3466654443332 3366765
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.39 E-value=1.4e-06 Score=73.23 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=79.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-------------------HHCCceecCCCcCCH
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------------------RAAGFTEENGTLGDI 172 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-------------------~~~G~~~~~~t~~~~ 172 (281)
|+|+|||+|-+|.++|..+.+. |++|+.++. +++..+.- ...+... ...+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~g~D~-n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~ 70 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDV-SSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDF 70 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEEEEeC-CHHHHHHhcccCCcccchhhhhhhhhhhcccccc---cCCCH
Confidence 6899999999999999999999 999875553 33222211 1111110 13578
Q ss_pred HhhcCcCCEEEEccCCh---------h-HHHHHH---HHHhcCCCCcEEEEeCCcchhh--------hhh-cccCCCCCc
Q 023490 173 YETISGSDLVLLLISDA---------A-QADNYE---KIFSCMKPNSILGLSHGFLLGH--------LQS-IGLDFPKNI 230 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~---------~-~~~vl~---ei~~~mKpgaILi~aaG~~l~~--------l~~-~~~~~~~~i 230 (281)
++++++||++++|+|.. . ...+++ ++....+++++|++-.-+..+. +++ .+.....++
T Consensus 71 ~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~ 150 (202)
T d1mv8a2 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDF 150 (202)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred HHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccc
Confidence 89999999999999852 1 122333 4556677888887654443221 111 112222333
Q ss_pred eEEEeccC--CCChhhHHhhhhC
Q 023490 231 GVIAVCPK--GMGPSVRRLYVQG 251 (281)
Q Consensus 231 ~VIrvmPn--tpg~~vr~~y~~g 251 (281)
.+..+|- .+|..++.+...-
T Consensus 151 -~~~~~PE~~~~G~a~~d~~~~~ 172 (202)
T d1mv8a2 151 -GVGTNPEFLRESTAIKDYDFPP 172 (202)
T ss_dssp -EEEECCCCCCTTSHHHHHHSCS
T ss_pred -cchhhhhhhcccchhhhhcCCC
Confidence 2566665 6677877776543
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.29 E-value=6.3e-06 Score=64.38 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=66.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-cCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E~-l~~ADVViLavP 187 (281)
|+|.|+|+|.+|+.+++.|.+. |++|++.+...+...+...+.+...-.|...+.+ ++ ++++|.++.+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~ 74 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTG 74 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCC
Confidence 7899999999999999999999 9999888766443323333445432112233332 33 789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+.+..-++......+.+..+|..+.--.
T Consensus 75 ~d~~N~~~~~~~k~~~~~~iI~~~~~~~ 102 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGINKTIARISEIE 102 (132)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred cHHHHHHHHHHHHHcCCceEEEEecCHH
Confidence 8755434445556677777776555433
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=3.8e-06 Score=67.82 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=59.8
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
++|||||+|+||.. .+..++.. .+++++ ++++...+..+.+.+.++.. ..+.++++++.|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence 58999999999986 56666654 156655 45555555555566777663 568899999999999999999
Q ss_pred hHHHHHHHHHhc
Q 023490 190 AQADNYEKIFSC 201 (281)
Q Consensus 190 ~~~~vl~ei~~~ 201 (281)
.+.++....+..
T Consensus 73 ~h~~~~~~al~~ 84 (164)
T d1tlta1 73 SHFDVVSTLLNA 84 (164)
T ss_dssp HHHHHHHHHHHT
T ss_pred hccccccccccc
Confidence 888877765544
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.15 E-value=4e-06 Score=65.09 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=63.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh-cCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~-l~~ADVViLavP 187 (281)
|++.|||+|.+|+.+|+.|.+. |++|++.+... +..+.+.+.|...--+...+ ++++ ++++|.|+++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvid~d~-~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDINE-EKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESCH-HHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEecCcH-HHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 6789999999999999999999 99988877653 44455555664321111112 3344 889999999999
Q ss_pred ChhHHHHHH-HHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYE-KIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~-ei~~~mKpgaILi~aaG 213 (281)
+.....++- ..........++.-+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~iiar~~~ 100 (134)
T d2hmva1 74 ANIQASTLTTLLLKELDIPNIWVKAQN 100 (134)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred chHHhHHHHHHHHHHcCCCcEEeeccc
Confidence 876655443 44444444445554544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=5.7e-06 Score=67.78 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=60.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhc--CcCCEEEEccCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l--~~ADVViLavP~ 188 (281)
.+|||||+|.||+..++.++.. .+++|+ ++++..++..+.+.+.++......+.+.+|++ .+.|+|++++|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-----~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 4799999999999999998775 145665 34444333344456666532111246888887 457999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 023490 189 AAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 189 ~~~~~vl~ei~~~mKpgaILi 209 (281)
..+.+++.+.+. .|.-|+
T Consensus 77 ~~h~~~~~~~l~---~g~~v~ 94 (184)
T d1ydwa1 77 SLHVEWAIKAAE---KGKHIL 94 (184)
T ss_dssp GGHHHHHHHHHT---TTCEEE
T ss_pred hhhcchhhhhhh---ccceee
Confidence 988777665544 455444
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.05 E-value=6.4e-06 Score=66.59 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=58.7
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVViLavP~~ 189 (281)
++|||||+|.+|+. ....++.. .+.++.++++......+.+.+.+... .+.+.+|+++ +.|+|++++|+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence 58999999999976 56666654 14576666665444445566677642 2557778775 679999999999
Q ss_pred hHHHHHHHHHhc
Q 023490 190 AQADNYEKIFSC 201 (281)
Q Consensus 190 ~~~~vl~ei~~~ 201 (281)
.+.+++.+.+..
T Consensus 74 ~H~~~~~~al~~ 85 (167)
T d1xeaa1 74 VHSTLAAFFLHL 85 (167)
T ss_dssp GHHHHHHHHHHT
T ss_pred cccccccccccc
Confidence 988887766554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.99 E-value=7.8e-06 Score=64.58 Aligned_cols=93 Identities=16% Similarity=0.114 Sum_probs=62.9
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec--CC--CcCCHHhhcCcCCEEEEc
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NG--TLGDIYETISGSDLVLLL 185 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~--~~--t~~~~~E~l~~ADVViLa 185 (281)
+ |+|.|||.|.||..+|+.|.+. |++|++++|...+..+.+.+.+.... .. .....++.+...|+++.+
T Consensus 2 ~-K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 74 (182)
T d1e5qa1 2 T-KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL 74 (182)
T ss_dssp C-CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred C-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEee
Confidence 5 8999999999999999999999 99999999986554444444442110 00 012355778899999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|............. .+..+++..
T Consensus 75 ~~~~~~~~~~~~~~~---~~~~~~~~~ 98 (182)
T d1e5qa1 75 IPYTFHATVIKSAIR---QKKHVVTTS 98 (182)
T ss_dssp SCGGGHHHHHHHHHH---HTCEEECSS
T ss_pred ccchhhhHHHHHHHh---hccceeecc
Confidence 988665444443322 344555443
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=97.95 E-value=7.5e-06 Score=72.07 Aligned_cols=68 Identities=13% Similarity=0.188 Sum_probs=53.8
Q ss_pred cCCHHhhcCcCCEEEEccCChhH-HHHHHHHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEeccC
Q 023490 169 LGDIYETISGSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPK 238 (281)
Q Consensus 169 ~~~~~E~l~~ADVViLavP~~~~-~~vl~ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmPn 238 (281)
..++.|++++||+||+++|...+ .++++++.+++++|++|++++.++.. .+.+ ..-+++++|+..||-
T Consensus 132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~hp~ 203 (242)
T d2b0ja2 132 TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSYHPG 203 (242)
T ss_dssp ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEECBCS
T ss_pred ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECCCcc
Confidence 57899999999999999998665 46999999999999999998887743 2322 122467889888883
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.89 E-value=1.5e-05 Score=65.28 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=56.1
Q ss_pred EEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 113 tIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
+|||||+|.+|+. .+..++.. .-.++|+ ++++..++..+.+.+.+... .+.+.+|+++ +.|+|++++|+
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~----~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCCG
T ss_pred EEEEEcCCHHHHHHHHHHHHhC----CCCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeeccccc
Confidence 7899999999987 57777764 0024655 44554333334455566532 2568999886 57999999999
Q ss_pred hhHHHHHHHHHhc
Q 023490 189 AAQADNYEKIFSC 201 (281)
Q Consensus 189 ~~~~~vl~ei~~~ 201 (281)
..+.+++.+.+..
T Consensus 78 ~~h~~~~~~al~~ 90 (181)
T d1zh8a1 78 ELNLPFIEKALRK 90 (181)
T ss_dssp GGHHHHHHHHHHT
T ss_pred ccccccccccccc
Confidence 9888887766554
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=5.3e-06 Score=61.66 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=34.4
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+++| |+|.|||+|..|.++|+.|... |.+|.+++++.
T Consensus 2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRM 38 (93)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSS
T ss_pred CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCc
Confidence 6899 9999999999999999999999 99999998764
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.82 E-value=5e-06 Score=69.71 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=69.1
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-C--ceecCCCcCCHHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-G--FTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G--~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+- .++.|||.|.-|..-++.++.. |.+|.+.|.+.++ .+..+.. + +.........+++.+++||+||-
T Consensus 30 v~p-a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~~~~-l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 30 VKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVER-LSYLETLFGSRVELLYSNSAEIETAVAEADLLIG 101 (168)
T ss_dssp BCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCC-cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCcHHH-HHHHHHhhcccceeehhhhhhHHHhhccCcEEEE
Confidence 445 7999999999999999999988 9999988876432 3333222 1 11100111246788999999998
Q ss_pred cc--CChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 185 LI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 av--P~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
++ |......++. +.+..||||++|+|.+
T Consensus 102 aalipG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 102 AVLVPGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred eeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence 65 4444456776 8999999999999763
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.78 E-value=6.4e-05 Score=57.30 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=57.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~-A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| +++.|||.|.+|.+-|+.|.++ |.+|++......+.... +.+.++....+.+ .++.+.++|+|+.
T Consensus 8 l~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~--~~~dl~~~~lv~~ 78 (113)
T d1pjqa1 8 CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGPF--DETLLDSCWLAIA 78 (113)
T ss_dssp ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESSC--CGGGGTTCSEEEE
T ss_pred EEeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeeccCC--CHHHhCCCcEEee
Confidence 58999 9999999999999999999999 99998887765443333 2233333221111 2355889999999
Q ss_pred ccCChhHHH
Q 023490 185 LISDAAQAD 193 (281)
Q Consensus 185 avP~~~~~~ 193 (281)
++.+.....
T Consensus 79 at~d~~~n~ 87 (113)
T d1pjqa1 79 ATDDDTVNQ 87 (113)
T ss_dssp CCSCHHHHH
T ss_pred cCCCHHHHH
Confidence 998876543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.78 E-value=3e-05 Score=66.06 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=56.7
Q ss_pred cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEE
Q 023490 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLV 182 (281)
Q Consensus 104 ~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~-~ADVV 182 (281)
+...|+| +||+|-|+|++|..+|+.|.+. |.+|++.+.. ....+.+...|.. ..+.+|++. +|||+
T Consensus 21 g~~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv~d~d-~~~~~~~~~~g~~-----~~~~~~~~~~~~DI~ 87 (201)
T d1c1da1 21 GLGSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADTD-TERVAHAVALGHT-----AVALEDVLSTPCDVF 87 (201)
T ss_dssp TCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCGGGGGGCCCSEE
T ss_pred CCCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEecch-HHHHHHHHhhccc-----ccCccccccccceee
Confidence 4357999 9999999999999999999999 9998877654 3445667777776 346677765 79988
Q ss_pred EEccCCh
Q 023490 183 LLLISDA 189 (281)
Q Consensus 183 iLavP~~ 189 (281)
+.|--..
T Consensus 88 iPcA~~~ 94 (201)
T d1c1da1 88 APCAMGG 94 (201)
T ss_dssp EECSCSC
T ss_pred ecccccc
Confidence 8765443
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.78 E-value=1.6e-05 Score=64.86 Aligned_cols=84 Identities=11% Similarity=0.205 Sum_probs=58.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
.+|||||+|+||+.+++.+++. .+++++ +.++.... ....++.. ..+.++.+.+.|+|++++|+..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~----~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~ 70 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL----DTKTPVFD----VADVDKHADDVDVLFLCMGSAT 70 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC----SSSSCEEE----GGGGGGTTTTCSEEEECSCTTT
T ss_pred ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc----cccccccc----chhhhhhccccceEEEeCCCcc
Confidence 4789999999999999999875 156655 34444321 22233432 4467788899999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEe
Q 023490 191 QADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~a 211 (281)
+.++..+. ++.|..++++
T Consensus 71 h~~~a~~a---L~aG~~vv~~ 88 (170)
T d1f06a1 71 DIPEQAPK---FAQFACTVDT 88 (170)
T ss_dssp HHHHHHHH---HTTTSEEECC
T ss_pred cHHHHHHH---HHCCCcEEEe
Confidence 76666544 4457665543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.70 E-value=2.9e-05 Score=65.77 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=68.4
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-------------CCC------
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-------------NGT------ 168 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-------------~~t------ 168 (281)
++- -++.|||.|..|..-++.++.. |.+|.++|.+.. ..+..++.+-..- +++
T Consensus 27 V~p-a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~~~~-~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~ 98 (183)
T d1l7da1 27 VPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRAA-TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGE 98 (183)
T ss_dssp ECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCST-THHHHHHTTCEECCC--------------------
T ss_pred cCC-cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhhcceEEEeccccccccccccchhhcCH
Confidence 344 6999999999999999999888 999998887654 4555555542110 000
Q ss_pred ------cCCHHhhcCcCCEEEE--ccCChhHHHHHH-HHHhcCCCCcEEEEeC
Q 023490 169 ------LGDIYETISGSDLVLL--LISDAAQADNYE-KIFSCMKPNSILGLSH 212 (281)
Q Consensus 169 ------~~~~~E~l~~ADVViL--avP~~~~~~vl~-ei~~~mKpgaILi~aa 212 (281)
...+.+.++++|+||- .+|-.....++. +....||||++|+|.+
T Consensus 99 ~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 99 EFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp ---CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 0013456889999996 455555556675 8999999999999764
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.58 E-value=3e-05 Score=71.10 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=68.8
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.++++|||.|.|+..+++.+...+ ++ +|.+++|..++..+.+.+ .|+..+ ...+.++++++||+|+.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~-----~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~--~~~s~~eav~~ADIi~t~ 200 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTIR--RASSVAEAVKGVDIITTV 200 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEEE--ECSSHHHHHTTCSEEEEC
T ss_pred CceEEEEcccHHHHHHHHHHhhhc-----ceeeeEEEecChHHHHHHHHhhhhccCCCce--ecCCHHHHHhcCCceeec
Confidence 489999999999999999988752 55 788888875443333332 244431 256899999999999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|+......+++ ...+|||++|.-+++..
T Consensus 201 Tas~s~~Pv~~--~~~l~pG~hI~aiGs~~ 228 (340)
T d1x7da_ 201 TADKAYATIIT--PDMLEPGMHLNAVGGDC 228 (340)
T ss_dssp CCCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred cccCCCCcccc--hhhcCCCCEEeecccch
Confidence 97544333444 24689999988766644
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.57 E-value=0.00013 Score=58.81 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=46.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC----CceecC-CCcCCHHhhcCcCCE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEEN-GTLGDIYETISGSDL 181 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~----G~~~~~-~t~~~~~E~l~~ADV 181 (281)
.+ +||+|||.|.+|.++|..|... ++ ++.+++.........+.+. -+.... .......+.+++||+
T Consensus 5 ~~-~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDv 77 (148)
T d1ldna1 5 GG-ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADL 77 (148)
T ss_dssp TS-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSE
T ss_pred CC-CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhcccee
Confidence 45 8999999999999999999987 65 6777776543222222211 111000 001234577999999
Q ss_pred EEEccC
Q 023490 182 VLLLIS 187 (281)
Q Consensus 182 ViLavP 187 (281)
|+++.-
T Consensus 78 vvitag 83 (148)
T d1ldna1 78 VVICAG 83 (148)
T ss_dssp EEECCS
T ss_pred EEEecc
Confidence 999554
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.55 E-value=3.5e-05 Score=60.08 Aligned_cols=77 Identities=19% Similarity=0.152 Sum_probs=51.1
Q ss_pred cEEEEE-ccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGII-G~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G---~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|||+|| |.|.||.++|+.|.+. |++|+++.|..++..+.+.+.+ ... .....+........+......+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence 689999 7999999999999999 9999999987543222222211 100 0002245566667777777777
Q ss_pred ChhHHHHH
Q 023490 188 DAAQADNY 195 (281)
Q Consensus 188 ~~~~~~vl 195 (281)
.....+.+
T Consensus 74 ~~~~~~~~ 81 (212)
T d1jaya_ 74 WEHAIDTA 81 (212)
T ss_dssp HHHHHHHH
T ss_pred eeccchHH
Confidence 66655533
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.54 E-value=7.2e-05 Score=63.50 Aligned_cols=90 Identities=9% Similarity=0.106 Sum_probs=59.3
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecC-CCcCCHHhhcC--cCCEEEEcc
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~-~t~~~~~E~l~--~ADVViLav 186 (281)
-+|||||+|.||.. ++..++.. .+++|+ ++++..++..+.+++.|+.... ..+.+.+|+++ +.|+|++++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 58999999999975 55555553 156766 4555444444556666664210 12468889886 578999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEE
Q 023490 187 SDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi 209 (281)
|+..+.++..+.+. .|.-|+
T Consensus 109 p~~~H~~~~~~al~---~gk~v~ 128 (221)
T d1h6da1 109 PNSLHAEFAIRAFK---AGKHVM 128 (221)
T ss_dssp CGGGHHHHHHHHHH---TTCEEE
T ss_pred chhhhhhHHHHhhh---cchhhh
Confidence 99998887766554 344443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.51 E-value=0.00068 Score=53.91 Aligned_cols=93 Identities=15% Similarity=0.103 Sum_probs=64.8
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec---CCCcCCHHh---hc-----
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYE---TI----- 176 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~---~~t~~~~~E---~l----- 176 (281)
-+| .++.|+|.|.+|...++.++.. |.+|++.++.. ...+.+++.|.... +....+..+ .+
T Consensus 25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~v~~~~-~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTARSP-RRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCC-CEEEEEcccccchhhHhhHhhh------cccccccchHH-HHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 367 8999999999999999999998 99988776654 45677888885321 111112222 12
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
...|+|+-++.... .++..+..++++-.|+..
T Consensus 97 ~g~D~vid~~g~~~---~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 97 DLPNVTIDCSGNEK---CITIGINITRTGGTLMLV 128 (170)
T ss_dssp SCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred cCCceeeecCCChH---HHHHHHHHHhcCCceEEE
Confidence 34899999887643 456666778888876654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=4.3e-05 Score=62.21 Aligned_cols=75 Identities=21% Similarity=0.080 Sum_probs=54.3
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC---ceecCCCcCCHHh-hcCcCCE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYE-TISGSDL 181 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G---~~~~~~t~~~~~E-~l~~ADV 181 (281)
.+++| |+|.|||.|-.+++++..|.+. |.+|.+.+|..++..+.+.... ... ..+.++ ...++|+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~~~~----~~~~~~~~~~~~dl 82 (170)
T d1nyta1 14 FIRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDL 82 (170)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSE
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhccccc----ccccccccccccce
Confidence 46789 9999999999999999999998 8899999987654444444322 111 112222 3567999
Q ss_pred EEEccCChhH
Q 023490 182 VLLLISDAAQ 191 (281)
Q Consensus 182 ViLavP~~~~ 191 (281)
||.++|....
T Consensus 83 iIN~Tp~G~~ 92 (170)
T d1nyta1 83 IINATSSGIS 92 (170)
T ss_dssp EEECCSCGGG
T ss_pred eecccccCcc
Confidence 9999998643
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.48 E-value=0.00036 Score=57.17 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=69.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec---------------CCCcCCHHhhc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---------------NGTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~---------------~~t~~~~~E~l 176 (281)
|+|+|||+|-+|..+|..+ +. |++|+.+ +.+++..+.. ..|...- -....+..+.+
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~------g~~V~g~-Din~~~v~~l-~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~ 71 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL------QNEVTIV-DILPSKVDKI-NNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY 71 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT------TSEEEEE-CSCHHHHHHH-HTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred CEEEEECCChhHHHHHHHH-HC------CCcEEEE-ECCHHHHHHH-hhcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence 7899999999999999866 57 9998755 4443322222 1221100 00023556678
Q ss_pred CcCCEEEEccCChhH-------HHHHH---HHHhcCCCCcEEEEeCCcchh---hhhhcccCCCCCceEEEecc--CCCC
Q 023490 177 SGSDLVLLLISDAAQ-------ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCP--KGMG 241 (281)
Q Consensus 177 ~~ADVViLavP~~~~-------~~vl~---ei~~~mKpgaILi~aaG~~l~---~l~~~~~~~~~~i~VIrvmP--ntpg 241 (281)
.++|+|++++|.... ...++ +.....+++.++++..-+... .+.. .+.. .. +..+| -.||
T Consensus 72 ~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~---~~~~-~~-~~~~PE~i~~G 146 (196)
T d1dlja2 72 KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQ---KFQT-DR-IIFSPEFLRES 146 (196)
T ss_dssp HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHH---HTTC-SC-EEECCCCCCTT
T ss_pred hccccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeee---ccch-hh-hccchhhcchh
Confidence 899999999986421 12222 223334667777654444332 2322 2222 22 33445 3467
Q ss_pred hhhHHhhhhC
Q 023490 242 PSVRRLYVQG 251 (281)
Q Consensus 242 ~~vr~~y~~g 251 (281)
..+.+++..-
T Consensus 147 ~ai~d~~~p~ 156 (196)
T d1dlja2 147 KALYDNLYPS 156 (196)
T ss_dssp STTHHHHSCS
T ss_pred hhHhhccCCC
Confidence 6776665544
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.44 E-value=0.00019 Score=57.88 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=43.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC----CceecC-CCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEEN-GTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~----G~~~~~-~t~~~~~E~l~~ADVViL 184 (281)
|||+|||.|.+|.++|-.|... |+ ++.+++....+...++.+. .+.... .......+.+++||+|++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVi 75 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVIS 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEE
Confidence 8999999999999999999887 64 6766665433222222111 111000 001123466899999999
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
+..
T Consensus 76 taG 78 (146)
T d1hyha1 76 TLG 78 (146)
T ss_dssp CCS
T ss_pred ecc
Confidence 754
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.39 E-value=0.00025 Score=57.77 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=58.6
Q ss_pred cEEEEEccCchHHH-HHHHHHhhhhhccCCcEEE-EEecCCc-ccHHHHHHCCceecCCCcCCHHhh-----cCcCCEEE
Q 023490 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGS-RSFAEARAAGFTEENGTLGDIYET-----ISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~A-iA~~Lra~~~~~~~G~~Vi-ig~r~~~-~s~~~A~~~G~~~~~~t~~~~~E~-----l~~ADVVi 183 (281)
.+|||||.|.+|+. +.+.++.+ ...++. ++.++.+ +..+.+++.|+... ..+.+++ ..+.|+|+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~-----~~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiVf 76 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNA-----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVF 76 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC-----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhC-----CcceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEEE
Confidence 57999999999986 56777665 123544 3444322 33456788887642 2234433 34689999
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
++||...+.+.- ......+.|.++++...
T Consensus 77 ~ATpag~h~~~~-~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 77 DATSASAHVQNE-ALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp ECSCHHHHHHHH-HHHHHHCTTCEEEECST
T ss_pred EcCCchhHHHhH-HHHHHHHcCCEEEEccc
Confidence 999987654321 12233578999987654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.39 E-value=0.00027 Score=56.85 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=43.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~-------~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
+||+|||.|.+|.++|..|... |. ++.++++...+...++.+ .+... -...+. +.+++||+|
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~--~~~~d~-~~~~~adiv 76 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK--IYSGEY-SDCKDADLV 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE--EEECCG-GGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccccCCce--EeeccH-HHhccccEE
Confidence 7999999999999999999988 64 777777653322222221 11110 002243 557999999
Q ss_pred EEccC
Q 023490 183 LLLIS 187 (281)
Q Consensus 183 iLavP 187 (281)
+++..
T Consensus 77 vitag 81 (146)
T d1ez4a1 77 VITAG 81 (146)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99753
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.30 E-value=0.00036 Score=56.49 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=44.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~-------G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
+||+|||.|.+|.++|..|... +. ++.+++.........+... +.... -...+..+.+++||+|+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~-v~~~~~~~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK-VSGSNTYDDLAGADVVI 76 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCC-EEEECCGGGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCcE-EEecccccccCCCcEEE
Confidence 7999999999999999887776 54 6777776544333232211 11100 00123457789999999
Q ss_pred EccC
Q 023490 184 LLIS 187 (281)
Q Consensus 184 LavP 187 (281)
++.-
T Consensus 77 itag 80 (150)
T d1t2da1 77 VTAG 80 (150)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9765
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.29 E-value=0.00056 Score=54.48 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=43.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHC--CceecC---C-CcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--GFTEEN---G-TLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~--G~~~~~---~-t~~~~~E~l~~ADVViL 184 (281)
+||+|||.|.+|.++|-.|... +. ++++.+.........+... ...... . ...+..+.++++|+|++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvi 75 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVV 75 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEE
Confidence 6999999999999999988877 65 7776665544322222221 100000 0 01122356799999999
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
+..
T Consensus 76 tag 78 (142)
T d1uxja1 76 TSG 78 (142)
T ss_dssp CCS
T ss_pred eee
Confidence 874
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.0012 Score=52.82 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=66.8
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc--------Cc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------SG 178 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l--------~~ 178 (281)
+| .+|.|+|.|.+|...++.++.. |. +|++.++. ++..+.+++.|.... +....+..+.. ..
T Consensus 26 ~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~~d~~-~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 26 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLS-ATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESC-HHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCccHHHHHHHHHHc------CCceEEeccCC-HHHHHHHHHhCCcccccccccccccccccccccCCCC
Confidence 57 8999999999999999999998 98 67666655 456778999886421 11112333332 25
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
.|+|+-++.... .++.....++++..+++.+
T Consensus 98 ~Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 98 PEVTIECTGAEA---SIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred ceEEEeccCCch---hHHHHHHHhcCCCEEEEEe
Confidence 899999998743 5667777888988776553
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.27 E-value=2.9e-05 Score=63.80 Aligned_cols=78 Identities=13% Similarity=-0.026 Sum_probs=53.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.+++| ++|.|||.|-.+++++..|.+. +.+|.+.+|..++....++..+...........+..+.++|+||.+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~ 86 (171)
T d1p77a1 14 WLRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINA 86 (171)
T ss_dssp CCCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEEC
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeec
Confidence 35789 9999999999999999999876 7789999998654444444432110000011222346889999999
Q ss_pred cCChh
Q 023490 186 ISDAA 190 (281)
Q Consensus 186 vP~~~ 190 (281)
+|...
T Consensus 87 tp~g~ 91 (171)
T d1p77a1 87 TSAGL 91 (171)
T ss_dssp CCC--
T ss_pred ccccc
Confidence 99864
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.25 E-value=0.00059 Score=54.46 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=42.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH--CCceecC--CCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEEN--GTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~--~G~~~~~--~t~~~~~E~l~~ADVViLa 185 (281)
+||+|||.|++|.++|..|... +. ++.+.+.........+.+ ....... .......+.+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence 5899999999999999999887 65 777777665433333332 1111000 0012235678999999997
Q ss_pred c
Q 023490 186 I 186 (281)
Q Consensus 186 v 186 (281)
.
T Consensus 76 a 76 (142)
T d1y6ja1 76 A 76 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.25 E-value=0.0002 Score=60.94 Aligned_cols=84 Identities=8% Similarity=0.121 Sum_probs=53.2
Q ss_pred cEEEEEccCchHH----HHHHHHHhhhhhccCCcEEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEE
Q 023490 112 NQIGVIGWGSQGP----AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~----AiA~~Lra~~~~~~~G~~Vi-ig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViL 184 (281)
.+|||||+|.+|+ .....++.. ..+++|+ ++++...+..+.+++.++.. ...+.+.+|+++ +-|+|++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence 6899999998654 444455443 1256766 44444333344556666531 112468899885 5789999
Q ss_pred ccCChhHHHHHHHHHh
Q 023490 185 LISDAAQADNYEKIFS 200 (281)
Q Consensus 185 avP~~~~~~vl~ei~~ 200 (281)
++|+..+.+.....+.
T Consensus 92 ~tp~~~h~~~~~~al~ 107 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILE 107 (237)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHHH
Confidence 9999888876664443
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=0.00017 Score=57.43 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=82.5
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+|+|||. +..|..+.++|++. |+++.....+... ..-.|... +.++.|+-..-|++++++|
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~~~----~~i~g~~~----~~~l~~i~~~iD~v~v~~p 79 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRFQG----EELFGEEA----VASLLDLKEPVDILDVFRP 79 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGGTT----SEETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEecccc----ceeeceec----ccchhhccCCCceEEEecc
Confidence 89999996 68999999999999 9988776543210 01135553 5688888788999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHhhh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~y~ 249 (281)
+....+++++.... ....+ .+-.|+.-..+.+ +....++.|| +||+++-+-.|+|.
T Consensus 80 ~~~v~~~v~~~~~~-g~k~i-~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 80 PSALMDHLPEVLAL-RPGLV-WLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR 135 (136)
T ss_dssp HHHHTTTHHHHHHH-CCSCE-EECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh-CCCeE-EEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence 98888888876544 33344 4556655332222 1113466666 89999888888874
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.22 E-value=0.00093 Score=55.48 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=57.6
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cHHHHHHCCceec-----------C--CCcCCHHhhc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE-----------N--GTLGDIYETI 176 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~~~A~~~G~~~~-----------~--~t~~~~~E~l 176 (281)
|-||||.|+|.||+.++|.+... .+++|+..++.... ........+.... + ....+.+++.
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~ 75 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI 75 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh
Confidence 56899999999999999999876 15676655544322 1122222221100 0 0124667788
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+++|+|+-|+|.....+..+.. ++.|.-+++.++
T Consensus 76 ~~vDiViecTG~f~~~e~a~~h---l~~G~KvIi~~~ 109 (178)
T d1b7go1 76 KTSDIVVDTTPNGVGAQYKPIY---LQLQRNAIFQGG 109 (178)
T ss_dssp HHCSEEEECCSTTHHHHHHHHH---HHTTCEEEECTT
T ss_pred hcCCEEEECCCCcCCHHHHHHH---HHcCCEEEEECC
Confidence 8999999999986555444433 344554555433
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.17 E-value=0.00044 Score=55.88 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=45.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~-------~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
+||+|||.|.+|.++|..|... ++ ++++.+.........+.. .+.........+.++.+++||+|+
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 8999999999999999988877 65 777676554322222221 111100001235678899999999
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
++.
T Consensus 82 ita 84 (154)
T d1pzga1 82 VTA 84 (154)
T ss_dssp ECC
T ss_pred Eec
Confidence 977
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.13 E-value=0.0012 Score=52.86 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=43.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHCCc----eecC--CCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGF----TEEN--GTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~G~----~~~~--~t~~~~~E~l~~ADVV 182 (281)
.||+||| .|.+|.++|..|... |+ ++.+.+.... ..++..... .... -...+..|.+++||+|
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~------~~~~elvLiDi~~~--~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSSH--HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CeEEEECCCChHHHHHHHHHHhC------CccceEEEEecccc--chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence 3899999 599999999999887 65 5666665432 233332211 0000 0023567889999999
Q ss_pred EEccC
Q 023490 183 LLLIS 187 (281)
Q Consensus 183 iLavP 187 (281)
++..-
T Consensus 73 Vitag 77 (144)
T d1mlda1 73 VIPAG 77 (144)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.12 E-value=0.00054 Score=55.32 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=65.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCCEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV 182 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~-----~ADVV 182 (281)
+| .+|.|+|.|.+|...++.++.. |.++++..+..+...+.+++.|...- +....+..|.++ ..|+|
T Consensus 28 ~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 28 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 67 9999999999999999999999 98766665555556778888886421 111123444332 27999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+-++.... .+++.+..++++-.+++.
T Consensus 101 id~~G~~~---~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 101 LESTGSPE---ILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EECSCCHH---HHHHHHHTEEEEEEEEEC
T ss_pred EEcCCcHH---HHHHHHhcccCceEEEEE
Confidence 99988643 455666778887766554
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.11 E-value=0.00021 Score=64.19 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=65.4
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHH---HHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFA---EARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~---~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
.++++|||.|.|+..+++.+...+ .+ +|.+++|..++..+ .....++.. ..+.+|.+.+||+|+.+|
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~-----~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~taT 195 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVF-----DIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTTT 195 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEECC
T ss_pred ccEEEEecCcccHHHHHHHHHHHh-----hhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEec
Confidence 489999999999999999998752 44 78888877543222 223444443 346678899999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|-.. .+++ .+.++||++|+.++...
T Consensus 196 ~s~~--P~~~--~~~l~~G~hv~~iGs~~ 220 (320)
T d1omoa_ 196 PSRK--PVVK--AEWVEEGTHINAIGADG 220 (320)
T ss_dssp CCSS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred cCcc--cccc--hhhcCCCCeEeecCCcc
Confidence 8532 2443 24689999998776654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00046 Score=57.30 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=60.4
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+++| |++.|||-+. .|+.++..|... |..|.+..... .++.+.+++||+|+.
T Consensus 33 i~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~t-------------------~~l~~~~~~ADivI~ 86 (166)
T d1b0aa1 33 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRFT-------------------KNLRHHVENADLLIV 86 (166)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSSC-------------------SCHHHHHHHCSEEEE
T ss_pred ccccc-ceEEEEeccccccHHHHHHHHHh------hcccccccccc-------------------chhHHHHhhhhHhhh
Confidence 46899 9999999885 999999999988 99887775431 256788899999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. ++. .+++|+|+++++++
T Consensus 87 a~G~p~---~i~--~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 87 AVGKPG---FIP--GDWIKEGAIVIDVG 109 (166)
T ss_dssp CSCCTT---CBC--TTTSCTTCEEEECC
T ss_pred hccCcc---ccc--ccccCCCcEEEecC
Confidence 988543 333 34689999998875
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.00098 Score=52.48 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=66.2
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
|+|+|+|+ |.||+++++.+.+. |++++...+.+ ..+.+.++|+||=-+.|..
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~---------------------~~~~~~~~DVvIDFS~p~~ 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVN---------------------GVEELDSPDVVIDFSSPEA 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETT---------------------EEEECSCCSEEEECSCGGG
T ss_pred CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCC---------------------cHHHhccCCEEEEecCHHH
Confidence 58999996 99999999999888 88876554321 1234678999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
..++++....+=+ .+|+=..|++-++++..... .+.+++ ..+||++
T Consensus 54 ~~~~l~~~~~~~~--p~ViGTTG~~~~~~~~i~~~-ak~~pv-~~a~N~s 99 (128)
T d1vm6a3 54 LPKTVDLCKKYRA--GLVLGTTALKEEHLQMLREL-SKEVPV-VQAYSRT 99 (128)
T ss_dssp HHHHHHHHHHHTC--EEEECCCSCCHHHHHHHHHH-TTTSEE-EECSCTH
T ss_pred HHHHHHHHHhcCC--CEEEEcCCCCHHHHHHHHHH-HhhCCE-EeeeccC
Confidence 8787775544422 25555788886554431112 344444 4567776
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.07 E-value=0.00064 Score=53.27 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=67.4
Q ss_pred cccCCCcEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCc------ccHHHHHH----CCceec
Q 023490 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------RSFAEARA----AGFTEE 165 (281)
Q Consensus 106 ~~l~G~ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~------~s~~~A~~----~G~~~~ 165 (281)
..+.+ ++|+|+|+ ++-...+++.|... |.+|.++++.-. ...+.... ....
T Consensus 9 ~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~-- 79 (136)
T d1mv8a3 9 TSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSL-- 79 (136)
T ss_dssp TTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTT--
T ss_pred HhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhccccccce--
Confidence 55778 99999997 57788899999988 999988875310 00111110 0111
Q ss_pred CCCcCCHHhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 166 ~~t~~~~~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
...+++++++++|+|+++++..+.. ++...++++.+|++..|+.
T Consensus 80 --~~~~~~e~i~~~D~ivi~t~h~~f~----~l~~~~~~~~~I~D~~~~~ 123 (136)
T d1mv8a3 80 --LVSDLDEVVASSDVLVLGNGDELFV----DLVNKTPSGKKLVDLVGFM 123 (136)
T ss_dssp --BCSCHHHHHHHCSEEEECSCCGGGH----HHHHSCCTTCEEEESSSCC
T ss_pred --eehhhhhhhhhceEEEEEeCCHHHH----HHHHHhcCCCEEEECCCCC
Confidence 1458999999999999999987643 3455677888999998864
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.06 E-value=3.4e-05 Score=62.51 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=50.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCCh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~~ 189 (281)
.+|||||+|.||+..++.+.+.- +. ....+ +..+... +.+...++. ..+.+|+++ +.|+|++++|+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~-~~-~~~~~-~~~~~~~---~~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPR-SA-AFLNL-IGFVSRR---ELGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH-HH-TTEEE-EEEECSS---CCCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhCC-CC-cEEEE-EeccchH---HHHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence 58999999999999998887641 00 01222 2222211 111122333 347888875 568999999999
Q ss_pred hHHHHHHHHHhc
Q 023490 190 AQADNYEKIFSC 201 (281)
Q Consensus 190 ~~~~vl~ei~~~ 201 (281)
.+.+++.+.+..
T Consensus 77 ~H~~~~~~al~~ 88 (172)
T d1lc0a1 77 SHEDYIRQFLQA 88 (172)
T ss_dssp GHHHHHHHHHHT
T ss_pred cccccccccccc
Confidence 888877766554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.0021 Score=50.40 Aligned_cols=96 Identities=13% Similarity=-0.025 Sum_probs=60.7
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH---HHHHHCCceecCCCcCCHH----hhcCcCCEEEEc
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIY----ETISGSDLVLLL 185 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~---~~A~~~G~~~~~~t~~~~~----E~l~~ADVViLa 185 (281)
.|-|+|+|.+|..+++.|.+. |.+|++.+....+.. +.....|+..-.|...+.+ .-+++||.|+++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 589999999999999999999 998887776543222 2233345532222233332 237889999999
Q ss_pred cCChhHHHHHHHHHhcCCCCc-EEEEeCCc
Q 023490 186 ISDAAQADNYEKIFSCMKPNS-ILGLSHGF 214 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpga-ILi~aaG~ 214 (281)
+++....-.+-.....+.|.. ++.-+..-
T Consensus 79 ~~~d~~n~~~~~~~r~~~~~~~iia~~~~~ 108 (153)
T d1id1a_ 79 SDNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp SSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred cccHHHHHHHHHHHHHhCCCCceEEEEcCH
Confidence 998665443333344444554 55544443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.04 E-value=0.00048 Score=54.58 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=44.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH--CC--ceecCC--CcCCHHhhcCcCCEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL 183 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~--~G--~~~~~~--t~~~~~E~l~~ADVVi 183 (281)
|||+|||.|.+|.++|..|... +. ++.+++....+....+.. .- +...+. ...+..+.+++||+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence 6899999999999999999887 64 777777654332222211 10 000000 0124457799999999
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
++.
T Consensus 75 ita 77 (142)
T d1guza1 75 ITA 77 (142)
T ss_dssp ECC
T ss_pred EEE
Confidence 985
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.04 E-value=0.0016 Score=51.97 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=77.8
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++|+|||. +..|..++++|+++ |++|.-.+.+.. .=.|... +.++.|+-..-|++++++|
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~~~------~i~G~~~----~~sl~dlp~~iD~v~i~vp 83 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPKYE------EVLGRKC----YPSVLDIPDKIEVVDLFVK 83 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCS------EETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCccc------ccCCCcc----cccccccCccceEEEEEeC
Confidence 89999995 57999999999999 998765554422 1246654 6788898889999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcchhhhhhcccCCCCCceEEEeccCCCChhhHHh
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntpg~~vr~~ 247 (281)
+....+++++.... ....+++-.+++.-+..+. .-..++.+ +.||++..+-.||
T Consensus 84 ~~~~~~~~~e~~~~-g~k~v~~~~G~~~ee~~~~---a~~~gi~v--ig~~C~~v~~~rl 137 (139)
T d2d59a1 84 PKLTMEYVEQAIKK-GAKVVWFQYNTYNREASKK---ADEAGLII--VANRCMMREHERL 137 (139)
T ss_dssp HHHHHHHHHHHHHH-TCSEEEECTTCCCHHHHHH---HHHTTCEE--EESCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEEeccccCHHHHHH---HHHCCCEE--EcCCcChhhhhhh
Confidence 99999999976654 3334444455555322111 11234444 4688876655555
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.99 E-value=0.00035 Score=56.67 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++ ++|.|||.|-.+++++..|... |. +|.+.+|..++....+...+... ..+. -..++|+||-+||
T Consensus 16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~--~~~~~DliINaTp 82 (167)
T d1npya1 16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL--ENQQADILVNVTS 82 (167)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC--TTCCCSEEEECSS
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhcc--cccchhhheeccc
Confidence 67 8999999999999999999998 87 68888887655555555556543 1121 2468999999999
Q ss_pred C
Q 023490 188 D 188 (281)
Q Consensus 188 ~ 188 (281)
.
T Consensus 83 i 83 (167)
T d1npya1 83 I 83 (167)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0011 Score=54.99 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=61.0
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++.|||-+ ..|+.+|..|... |..|.++.... .++.+.+++||+|+.
T Consensus 35 i~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~t-------------------~~l~~~~~~aDivi~ 88 (170)
T d1a4ia1 35 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSKT-------------------AHLDEEVNKGDILVV 88 (170)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTC-------------------SSHHHHHTTCSEEEE
T ss_pred ccccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEeccc-------------------ccHHHHHhhccchhh
Confidence 46999 999999987 5999999999998 99888776432 256678899999999
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
++.-.. +++ ..++|+|++|++++
T Consensus 89 a~G~~~---~i~--~~~vk~g~iviDvg 111 (170)
T d1a4ia1 89 ATGQPE---MVK--GEWIKPGAIVIDCG 111 (170)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred cccccc---ccc--cccccCCCeEeccC
Confidence 998643 333 35789999999884
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.97 E-value=0.0012 Score=50.89 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=62.7
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|+|+|||. +..|..+.++|++. |++|.-.+.+... =.|... +.++.|+=..-|++++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~~lp~~~D~vvi~vp 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNYDE------IEGLKC----YRSVRELPKDVDVIVFVVP 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCSE------ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEEEEcccccc------ccCccc----cccchhccccceEEEEEeC
Confidence 78999994 67899999999999 9986655443221 246664 6788888888899999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
+....+++++.... ....+++-.++.
T Consensus 66 ~~~~~~~l~~~~~~-g~k~v~~~~g~~ 91 (116)
T d1y81a1 66 PKVGLQVAKEAVEA-GFKKLWFQPGAE 91 (116)
T ss_dssp HHHHHHHHHHHHHT-TCCEEEECTTSC
T ss_pred HHHHHHHHHHHHhc-CCceEEeccchh
Confidence 99999999876543 233444433333
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.95 E-value=0.0015 Score=52.06 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=43.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~-------~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
|||+|||.|++|.++|..|... |. ++.+.+...+.....+.. ......-....+ .|.+++||+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEE
Confidence 7999999999999999998877 64 676666553322222211 111000000123 4789999999
Q ss_pred EEccC
Q 023490 183 LLLIS 187 (281)
Q Consensus 183 iLavP 187 (281)
++..-
T Consensus 74 vitag 78 (142)
T d1ojua1 74 VVTAG 78 (142)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99764
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.91 E-value=0.0036 Score=51.40 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=58.1
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC-cccHHHHHHCCceecCC--------------CcCCHHhh
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENG--------------TLGDIYET 175 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~-~~s~~~A~~~G~~~~~~--------------t~~~~~E~ 175 (281)
|++|||-|+|.||+.+.+.+... -+++|+..++.. ......+...++..... ...+..++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-----~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 75 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-----CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence 68999999999999999988766 136665444332 22223444444332100 01245667
Q ss_pred cCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 176 l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.+++|+|+=|+|.....+..+. +++.|.-+++.++
T Consensus 76 ~~~vDvViEcTG~f~~~~~~~~---hl~~G~K~vi~~~ 110 (171)
T d1cf2o1 76 LDEADIVIDCTPEGIGAKNLKM---YKEKGIKAIFQGG 110 (171)
T ss_dssp HHTCSEEEECCSTTHHHHHHHH---HHHTTCEEEECTT
T ss_pred hcCCCEEEEccCCCCCHHHHHH---HHHcCCCEEEECC
Confidence 7899999999998665544443 3444555555433
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.00055 Score=54.38 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=43.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~----~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+||+|||.|++|.++|..|... +. ++.+.+....+...++.+ ..+........+..+.+++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 6899999999999999988877 54 777776553322222221 01110000012335679999999997
Q ss_pred c
Q 023490 186 I 186 (281)
Q Consensus 186 v 186 (281)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.87 E-value=0.00086 Score=58.04 Aligned_cols=76 Identities=16% Similarity=0.071 Sum_probs=54.5
Q ss_pred cccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEE
Q 023490 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLV 182 (281)
Q Consensus 104 ~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVV 182 (281)
+-..|+| ++|.|-|+|++|..+|+.|.+. |.+|++.+.+.........+.|... .+.++. -.+|||+
T Consensus 33 g~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~~~~~~~~~~~~g~~~-----~~~~~~~~~~cDIl 100 (230)
T d1leha1 33 GSDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIF 100 (230)
T ss_dssp SSCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEE
T ss_pred CCCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeecccHHHHHHHHHhcCCcc-----cCCcccccccccEe
Confidence 3467999 9999999999999999999999 9998877665332223333455553 344444 4579999
Q ss_pred EEccCChhH
Q 023490 183 LLLISDAAQ 191 (281)
Q Consensus 183 iLavP~~~~ 191 (281)
+-|--....
T Consensus 101 ~PcA~~~~I 109 (230)
T d1leha1 101 APCALGAVL 109 (230)
T ss_dssp EECSCSCCB
T ss_pred ccccccccc
Confidence 987665443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.87 E-value=0.0034 Score=50.73 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=60.6
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCC-CcCC--HHhhc-----CcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG-TLGD--IYETI-----SGS 179 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~-t~~~--~~E~l-----~~A 179 (281)
-+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|....-. ...+ .++.. ...
T Consensus 26 ~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~ 98 (174)
T d1p0fa2 26 TPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 98 (174)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCC
Confidence 467 9999999999999999999999 8754455555566678999999653100 0111 23332 358
Q ss_pred CEEEEccCChhHHHHHHHHHhcC-CC-CcEEE
Q 023490 180 DLVLLLISDAAQADNYEKIFSCM-KP-NSILG 209 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~m-Kp-gaILi 209 (281)
|+++-++.... .+++.+..+ ++ |.+++
T Consensus 99 d~vid~~g~~~---~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 99 DYAVECAGRIE---TMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp SEEEECSCCHH---HHHHHHHTBCTTTCEEEE
T ss_pred cEEEEcCCCch---HHHHHHHHHHHhcCceEE
Confidence 99999988653 344333344 44 44544
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.87 E-value=0.0019 Score=52.68 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=57.3
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETIS 177 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~-------G~~~~~~t~~~~~E~l~ 177 (281)
.++- .||+|||.|++|.++|..|... |. ++.+.+........++.+. +... .-...+ .+.++
T Consensus 16 ~~~~-~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~-~~~~~d-~~~~~ 86 (159)
T d2ldxa1 16 KLSR-CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPK-IVFGKD-YNVSA 86 (159)
T ss_dssp CCCC-CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCE-EEEESS-GGGGT
T ss_pred cCCC-CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCe-EEeccc-hhhhc
Confidence 3455 7899999999999999999887 65 6777765533222222211 1100 000123 45679
Q ss_pred cCCEEEEccCCh------------hHHHHHHHHHhcC---CCCcEEEEeCC
Q 023490 178 GSDLVLLLISDA------------AQADNYEKIFSCM---KPNSILGLSHG 213 (281)
Q Consensus 178 ~ADVViLavP~~------------~~~~vl~ei~~~m---KpgaILi~aaG 213 (281)
+||+|++..-.. ....++.++.+.+ .|+++++++.-
T Consensus 87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 999999965331 1122444444433 56777766543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.79 E-value=0.003 Score=47.19 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=53.1
Q ss_pred cCCCcEEEEEccCchH-HHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 108 FNGINQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG-~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+.-+++|=|||.|-+| .++|+.|++. |++|.-.|.......+..++.|+... .....+-+++.|+|+..
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S 74 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVS 74 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEEC
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEEC
Confidence 3445999999999999 7789999999 99998887765555566777898753 33344557899998874
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00045 Score=56.51 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=61.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccH---HHHHHC----CceecCCCcC---CHHh
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAA----GFTEENGTLG---DIYE 174 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~---~~A~~~----G~~~~~~t~~---~~~E 174 (281)
.+++| +++.|||.|-.|++++..|.+. |. ++.+.+|..++.. ..+++. ....+...+. ++.+
T Consensus 14 ~~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T d1vi2a1 14 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 86 (182)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence 46899 9999999999999999999998 77 6778888754221 112221 1111000012 2446
Q ss_pred hcCcCCEEEEccCChhHH---HHHHHHHhcCCCCcEEEEe
Q 023490 175 TISGSDLVLLLISDAAQA---DNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 175 ~l~~ADVViLavP~~~~~---~vl~ei~~~mKpgaILi~a 211 (281)
.+.++|+||-++|..... +.+..-...++++.+++++
T Consensus 87 ~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di 126 (182)
T d1vi2a1 87 ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTEC 126 (182)
T ss_dssp HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEEC
T ss_pred hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHh
Confidence 678999999999974321 1111112346666666654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.78 E-value=0.00096 Score=54.61 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=46.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHHHC--CceecC--C-CcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEEN--G-TLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~~~--G~~~~~--~-t~~~~~E~l~~ 178 (281)
..++. +||+|||.|++|.++|..|... |. ++.+++...+....++... ...... . ......+.+++
T Consensus 16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ 88 (160)
T d1i0za1 16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTAN 88 (160)
T ss_dssp CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTT
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhccc
Confidence 34566 8999999999999999999988 76 7777776533322223211 110000 0 01123567899
Q ss_pred CCEEEEcc
Q 023490 179 SDLVLLLI 186 (281)
Q Consensus 179 ADVViLav 186 (281)
||+|++..
T Consensus 89 adiVVitA 96 (160)
T d1i0za1 89 SKIVVVTA 96 (160)
T ss_dssp CSEEEECC
T ss_pred ccEEEEec
Confidence 99999944
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.0008 Score=54.95 Aligned_cols=71 Identities=23% Similarity=0.317 Sum_probs=49.9
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEcc
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViLav 186 (281)
||||.|+| .|.+|.++++.|.+. |++|++..|..++... ....++....+... +++++++++|+|+.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~~-~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhccc-ccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 59999999 799999999999999 9999988886543111 11123322112233 3457899999999987
Q ss_pred CC
Q 023490 187 SD 188 (281)
Q Consensus 187 P~ 188 (281)
..
T Consensus 76 g~ 77 (205)
T d1hdoa_ 76 GT 77 (205)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.75 E-value=0.0018 Score=52.23 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=63.3
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc---------
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------- 176 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l--------- 176 (281)
-+| .+|.|+|.|.+|...++.++.. |. +|++.++. ++..+.+++.|.... +....+..+..
T Consensus 27 ~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 27 FAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAGS-PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp CBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred CCC-CEEEEECCCccchhheeccccc------ccccccccccc-cccccccccccceEEEeccccchHHHHHHHHHhhCC
Confidence 368 9999999999999999999998 97 67666655 445678888885321 01112333321
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
...|+||-++.... .++..+..++++..+++.
T Consensus 99 ~g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 99 RGADFILEATGDSR---ALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp SCEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeecCCchh---HHHHHHHHhcCCCEEEEE
Confidence 13799998887533 355556677887766544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.00055 Score=54.87 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=64.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc--CC-HHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD-IYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~--~~-~~E~l~~ADVViLa 185 (281)
+| .+|.|+|.|.+|...++.++.. |.+|++.++.+ +..+.+++.|....-.+. .+ .++.....|+|+.+
T Consensus 27 ~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~~~-~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 27 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRSS-RKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESSS-TTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCCcchhHHHHhhhc------cccccccccch-hHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 68 9999999999999999999998 99988777764 457788898853210011 12 23445668999988
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+...... .++..+..++++-.+++.
T Consensus 99 ~~~~~~~-~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 99 ASSLTDI-DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred ecCCccc-hHHHHHHHhhccceEEEe
Confidence 6643211 244556778887666544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.70 E-value=0.00091 Score=53.57 Aligned_cols=70 Identities=23% Similarity=0.211 Sum_probs=43.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHHHHH--HCC--ceec-CCCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEE-NGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~~A~--~~G--~~~~-~~t~~~~~E~l~~ADVViL 184 (281)
.||+|||.|++|.++|..|... ++ ++.+.+........++. +.. +... .-...+..|.+++||+|++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVi 75 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 75 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEE
Confidence 5899999999999999999887 65 77777655332222221 111 1100 0001233466899999999
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
+.-
T Consensus 76 taG 78 (143)
T d1llda1 76 TAG 78 (143)
T ss_dssp CCC
T ss_pred ecc
Confidence 653
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.70 E-value=0.0032 Score=49.34 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=66.3
Q ss_pred cEEEEEcc----CchHHHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 112 ktIGIIG~----G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
++|+|||. |..|..+.++|++. | .+|+-.+.+..+ =.|... +.++.|+=...|++++++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~~~------i~G~~~----y~sl~dlp~~vDlvvi~v 72 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKEEE------VQGVKA----YKSVKDIPDEIDLAIIVV 72 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSCSE------ETTEEC----BSSTTSCSSCCSEEEECS
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCccc------cCCeEe----ecchhhcCCCCceEEEec
Confidence 99999996 89999999999875 4 576655554321 246653 678888888899999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
|+....+++++.... .-..++++++||.
T Consensus 73 p~~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 73 PKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred ChHHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 999888888876543 2345778899886
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.67 E-value=0.0011 Score=53.96 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=63.2
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| .+|.|+|.|-+|...++.++.. |. +|++.+ ..++..+.+++.|.... +..-.+..+.+ ...|
T Consensus 27 ~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi~~d-~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 27 MG-SSVVVIGIGAVGLMGIAGAKLR------GAGRIIGVG-SRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHTT------TCSCEEEEC-CCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEEcCCcchhhhhhhhhcc------ccccccccc-chhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcc
Confidence 67 9999999999999999999988 97 555444 44555778888885321 00112233322 2389
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+||-++.... .+++.+..++|+..+++.+
T Consensus 99 ~vid~~g~~~---~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 99 RVIMAGGGSE---TLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred eEEEccCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 9999998643 4566667778887776543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.63 E-value=0.0018 Score=52.97 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=54.0
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC----C--ce-ecCCCcCCHHhhcC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FT-EENGTLGDIYETIS 177 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~----G--~~-~~~~t~~~~~E~l~ 177 (281)
.+|+| |++-|.| .|-||.++|+.|.+. |.+|++..|..++..+.+.+. . +. .+.....+.++++.
T Consensus 19 ~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 19 GSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp SCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc
Confidence 68999 9999999 789999999999999 999999988754433333221 1 11 10011234667889
Q ss_pred cCCEEEEccCC
Q 023490 178 GSDLVLLLISD 188 (281)
Q Consensus 178 ~ADVViLavP~ 188 (281)
+.|+||.+...
T Consensus 92 ~iDilin~Ag~ 102 (191)
T d1luaa1 92 GAHFVFTAGAI 102 (191)
T ss_dssp TCSEEEECCCT
T ss_pred CcCeeeecCcc
Confidence 99999987653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.62 E-value=0.0032 Score=48.12 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=58.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E----~l~~ADVViLavP 187 (281)
|.+-|+|||.+|+.+++.|+.. + |.+.+... ...+.....|+..-.|...+.+- -+.+|+.++++++
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~------~--i~vi~~d~-~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS------E--VFVLAEDE-NVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG------G--EEEEESCT-THHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHcCC------C--CEEEEcch-HHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 4688999999999999999755 4 44444443 34455667775442233334332 2789999999999
Q ss_pred ChhHHHHHHHHHhcCCCC-cEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPN-SILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpg-aILi~aaG 213 (281)
+....-.+-.....+.|. .++..+..
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~~~~ 98 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAEAER 98 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEECSS
T ss_pred chhhhHHHHHHHHHHCCCceEEEEEcC
Confidence 876654444444445555 35554443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.53 E-value=0.0048 Score=48.32 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC-cCCH----HhhcCcCCEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-LGDI----YETISGSDLVL 183 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t-~~~~----~E~l~~ADVVi 183 (281)
+| .+|.|+|.|.+|...++.++.. |.+|++.++. +...+.+++.|+..-... ..+. .+.-.+.|.++
T Consensus 27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~~~~-~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeecccchhhhhHHHhcC------CCeEeccCCC-HHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 67 9999999999999999999998 9987776655 445678888886432111 1122 23345677777
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
..+... ..++..+..++++..+++.
T Consensus 99 ~~~~~~---~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 99 VTAVSK---PAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred eecCCH---HHHHHHHHHhccCCceEec
Confidence 776543 3567777788888877654
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.49 E-value=0.001 Score=53.97 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=52.1
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC----cee-cCCCcCCHHhhcCcCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE-ENGTLGDIYETISGSD 180 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G----~~~-~~~t~~~~~E~l~~AD 180 (281)
.+++| |++.|||.|-.+++++..|... | +|.|.+|..++..+.+.... ... +.-...+.+..+.++|
T Consensus 14 ~~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (177)
T d1nvta1 14 GRVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVD 85 (177)
T ss_dssp CCCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhh
Confidence 56899 9999999999999999998765 6 78899887544333222111 000 0000235666788999
Q ss_pred EEEEccCCh
Q 023490 181 LVLLLISDA 189 (281)
Q Consensus 181 VViLavP~~ 189 (281)
+|+.++|..
T Consensus 86 liIn~tp~g 94 (177)
T d1nvta1 86 IIINATPIG 94 (177)
T ss_dssp EEEECSCTT
T ss_pred hhccCCccc
Confidence 999999964
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.48 E-value=0.014 Score=47.63 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=57.5
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC-CcccHHHHHHCCceecC--------------CCcCCHHhhc
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN--------------GTLGDIYETI 176 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~-~~~s~~~A~~~G~~~~~--------------~t~~~~~E~l 176 (281)
++|||.|+|.||+.+++.+... .+++|+..++. +......+.+.++.... ....+..++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-----~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 6899999999999999998765 14666544443 22223344555432100 0123566778
Q ss_pred CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 177 ~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++|+|+=|++.....+... .|++.|+-.++.+
T Consensus 78 ~~vDvViEcTG~f~~~~~~~---~hl~~G~k~Vi~s 110 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKP---LYEKAGVKAIFQG 110 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHH---HHHHHTCEEEECT
T ss_pred ccCCEEEECCCCCCCHHHHH---HHHHcCCCEEEEC
Confidence 89999999999866554444 3344565444433
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=96.46 E-value=0.02 Score=45.88 Aligned_cols=74 Identities=14% Similarity=-0.027 Sum_probs=42.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEEE
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~-------~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|||+|||.|+.|.+++-.......+....-++.+.+...+ ..+.+.. ..... ....+.+|.+++||+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~-k~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEE-KQKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHH-HHHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcH-HHHHHHHHHHhhhccCceE--EEecCcccccCCCCEEEE
Confidence 6899999999998777443222100001236666665432 2222211 11211 113578899999999999
Q ss_pred ccCC
Q 023490 185 LISD 188 (281)
Q Consensus 185 avP~ 188 (281)
..-.
T Consensus 78 ta~~ 81 (162)
T d1up7a1 78 QFRP 81 (162)
T ss_dssp CCCT
T ss_pred eccc
Confidence 7764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.41 E-value=0.009 Score=47.12 Aligned_cols=92 Identities=20% Similarity=0.193 Sum_probs=63.6
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhc-----CcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETI-----SGS 179 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t---~~~~~E~l-----~~A 179 (281)
-+| .+|.|+|.|-+|...++.++.. |..+++..+..++..+.+++.|....... ..+..+.+ ...
T Consensus 27 ~~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 27 EPG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence 368 9999999999999999999999 97666666666666788999985431001 12233332 458
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
|+|+-++.... .++.....+++|..++
T Consensus 100 D~vid~~G~~~---~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 100 DYSFECIGNVK---VMRAALEACHKGWGVS 126 (176)
T ss_dssp SEEEECSCCHH---HHHHHHHTBCTTTCEE
T ss_pred cEeeecCCCHH---HHHHHHHhhcCCceeE
Confidence 99999987643 4455566677775444
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.37 E-value=0.0034 Score=50.14 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=61.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhcC-----cCCEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETIS-----GSDLV 182 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~-~~E~l~-----~ADVV 182 (281)
+| .+|.|+|.|.+|...++.++.. |..+++..+.+++..+.+++.|....-.+..+ .++..+ ..|+|
T Consensus 32 ~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence 57 9999999999999999999998 86544554444555677888875421001112 222222 37888
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+-++.... .++..+..++++-.+++.
T Consensus 105 id~~g~~~---~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 105 MDFVGSQA---TVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EESSCCHH---HHHHGGGGEEEEEEEEEC
T ss_pred EEecCcch---HHHHHHHHHhCCCEEEEE
Confidence 88888644 456667778887766543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0029 Score=50.36 Aligned_cols=91 Identities=18% Similarity=0.236 Sum_probs=64.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~---~~E~l~~ADVViLa 185 (281)
+| .+|.|+|.|.+|...++.++.. |.++++.++..+ ..+.+++.|....-. ..+ ..+..+..|+++-+
T Consensus 30 ~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~~~-~~~~a~~lGad~~i~-~~~~~~~~~~~~~~D~vid~ 100 (168)
T d1uufa2 30 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTSEA-KREAAKALGADEVVN-SRNADEMAAHLKSFDFILNT 100 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSGG-GHHHHHHHTCSEEEE-TTCHHHHHTTTTCEEEEEEC
T ss_pred CC-CEEEEeccchHHHHHHHHhhcc------cccchhhccchh-HHHHHhccCCcEEEE-CchhhHHHHhcCCCceeeee
Confidence 67 9999999999999999999998 998887776644 467888888532100 112 22345679999999
Q ss_pred cCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 186 vP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+.... .++..+..++++-.+++.
T Consensus 101 ~g~~~---~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 101 VAAPH---NLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CSSCC---CHHHHHTTEEEEEEEEEC
T ss_pred eecch---hHHHHHHHHhcCCEEEEe
Confidence 97643 244556677777666544
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.33 E-value=0.013 Score=47.34 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=61.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCC-c-C-CHHhhc-----CcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-L-G-DIYETI-----SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t-~-~-~~~E~l-----~~AD 180 (281)
+| .+|.|+|.|-+|...++.++.. |...++..+..++..+.+++.|....... . . ..++.. ...|
T Consensus 28 ~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 28 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CC-CEEEEECCChHHHHHHHHHHHh------CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCc
Confidence 67 9999999999999999999999 98544454555566889999996531100 0 1 122222 4589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpg 205 (281)
+++-++.... .+++.+..++++
T Consensus 101 ~vie~~G~~~---~~~~a~~~~~~g 122 (174)
T d1e3ia2 101 YSLDCAGTAQ---TLKAAVDCTVLG 122 (174)
T ss_dssp EEEESSCCHH---HHHHHHHTBCTT
T ss_pred EEEEecccch---HHHHHHHHhhcC
Confidence 9999998644 566667777774
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.011 Score=47.27 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=52.2
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCC-cEEEEEecCCcc--cHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G-~~Viig~r~~~~--s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
||+||||| .|..|+.+.+.|.+. ..+- .++......... ............ .....+.++++|++|+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~---~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~----~~~~~~~~~~~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEE---RDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ----DAFDLEALKALDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT---TGGGGSEEEEEESSSTTSBCCGGGTCCCBCE----ETTCHHHHHTCSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhC---CCCCeeEEEEeeccccccccccccCCceeee----cccchhhhhcCcEEEEec
Confidence 78999999 599999999876542 0001 144433332211 101111111111 011224578999999999
Q ss_pred CChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 187 P~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
|.....++..++... ..+.+|++.++
T Consensus 74 ~~~~s~~~~~~~~~~-g~~~~VID~Ss 99 (146)
T d1t4ba1 74 GGDYTNEIYPKLRES-GWQGYWIDAAS 99 (146)
T ss_dssp CHHHHHHHHHHHHHT-TCCCEEEECSS
T ss_pred CchHHHHhhHHHHhc-CCCeecccCCc
Confidence 987666666655432 33356776554
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.28 E-value=0.0069 Score=47.67 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=63.6
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh----cCcCCEEE
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET----ISGSDLVL 183 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~----l~~ADVVi 183 (281)
+| .+|.|+|.|.+|...++.++.. |.+|++.++. +...+.+++.|.... +....+..|. -...|.++
T Consensus 27 ~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~~~~-~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i 98 (166)
T d1llua2 27 PG-QWVAISGIGGLGHVAVQYARAM------GLHVAAIDID-DAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL 98 (166)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeeccccHHHHHHHHHHc------CCccceecch-hhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence 57 9999999999999999999998 9988777665 445678888886421 1111233332 23456777
Q ss_pred EccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 184 LavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
.++.... .++..++.++++-.+++.
T Consensus 99 ~~~~~~~---~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 99 VTAVSNS---AFGQAIGMARRGGTIALV 123 (166)
T ss_dssp ECCSCHH---HHHHHHTTEEEEEEEEEC
T ss_pred cccccch---HHHHHHHHhcCCcEEEEE
Confidence 7666543 566677888887776654
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.0015 Score=54.11 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=61.4
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHH-----HCCcee-cCCCcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----AAGFTE-ENGTLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~-----~~G~~~-~~~t~~~~~E~l~~ 178 (281)
.+++| |++.|||-++ .|..+|..|... |..|..+............ ..+... ...+...+.+...+
T Consensus 25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~ 97 (171)
T d1edza1 25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD 97 (171)
T ss_dssp CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEeccccccccccccceeeeeeccccccccchhHHhhcccc
Confidence 58999 9999999885 499999999988 8888777544221000000 000000 00001125677789
Q ss_pred CCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 179 ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+|+|+.+++.... .+. .+++|+|+++++.+.
T Consensus 98 aDIvIsavG~p~~--~i~--~d~ik~GavvIDvGi 128 (171)
T d1edza1 98 SDVVITGVPSENY--KFP--TEYIKEGAVCINFAC 128 (171)
T ss_dssp CSEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CCEEEEccCCCcc--ccC--hhhcccCceEeeccc
Confidence 9999999986431 011 246799999998874
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0019 Score=52.71 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=70.8
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC-CcccH--H-----HHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSF--A-----EARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~-~~~s~--~-----~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
.+|+|+|+ |.||+++++.+... .++++..+..+ ..... . .....++.. ..+++++.+.+|+|
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi 75 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 75 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence 68999995 99999999988775 16666544432 21100 0 000122222 34677889999999
Q ss_pred EEccCChhHHHHHHHHHhcCCCCc-EEEEeCCcchhhhhhcccCCCCCceEEEeccCCC
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpga-ILi~aaG~~l~~l~~~~~~~~~~i~VIrvmPntp 240 (281)
|=-+.|....+.++....+ +. +|+=..|+.-++++... ...+.+++ ...||+.
T Consensus 76 IDFs~p~~~~~~~~~a~~~---~~~~ViGTTG~~~~~~~~i~-~~a~~ipi-~~apN~S 129 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQAIR-DAAADIAI-VFAANFS 129 (162)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHHHH-HHTTTSCE-EECSCCC
T ss_pred EEeccHHHHHHHHHHHHhc---cceeEEecCCCcHHHHHHHH-HHcCCCCE-EEEcccc
Confidence 9999987777777644333 33 55557888854433211 12345664 6779985
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.14 E-value=0.0029 Score=50.62 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=41.7
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHH--HHHH--C--CceecCC----CcCCHHhhcCc
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA--EARA--A--GFTEENG----TLGDIYETISG 178 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~--~A~~--~--G~~~~~~----t~~~~~E~l~~ 178 (281)
|||+|||. |.+|.++|..|... +. ++.+.+........ .+.+ . ....... ...+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence 68999995 99999999999887 64 77777765321111 1111 0 1100000 01223578999
Q ss_pred CCEEEEc
Q 023490 179 SDLVLLL 185 (281)
Q Consensus 179 ADVViLa 185 (281)
||+|+++
T Consensus 75 aDvVVit 81 (145)
T d1hyea1 75 SDVVIIT 81 (145)
T ss_dssp CSEEEEC
T ss_pred ceEEEEe
Confidence 9999997
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.06 E-value=0.016 Score=46.94 Aligned_cols=75 Identities=17% Similarity=0.039 Sum_probs=41.9
Q ss_pred cEEEEEccCchH--HHHHHHHHhhhhhccCC-cEEEEEecCCcccHHHH---------HHCCceecCCCcCCHHhhcCcC
Q 023490 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEA---------RAAGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 112 ktIGIIG~G~mG--~AiA~~Lra~~~~~~~G-~~Viig~r~~~~s~~~A---------~~~G~~~~~~t~~~~~E~l~~A 179 (281)
+||.|||.|+.| .+++..+... +.+. -++.+.+........++ .+.+.........+..+.+++|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~---~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~ga 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRY---HELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGA 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTT---TTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred cEEEEECCChhhHHHHHHHHHHhc---cccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCC
Confidence 689999999887 4455555543 1112 25666654432111111 1222221111235778999999
Q ss_pred CEEEEccCCh
Q 023490 180 DLVLLLISDA 189 (281)
Q Consensus 180 DVViLavP~~ 189 (281)
|+|++.....
T Consensus 79 DvVv~ta~~~ 88 (169)
T d1s6ya1 79 DFVTTQFRVG 88 (169)
T ss_dssp SEEEECCCTT
T ss_pred CEEEEccccC
Confidence 9999998753
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0047 Score=48.43 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
..|+| |++.|||.|.+|..-++.|.+. |.+|++...
T Consensus 9 ~~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVvap 44 (150)
T d1kyqa1 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSP 44 (150)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEE
T ss_pred eeeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC
Confidence 67999 9999999999999999999999 999887754
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.0045 Score=47.44 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=30.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.||||||.|.+|+-++..++.. |+++++.++..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~~ 44 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRYA 44 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESST
T ss_pred CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCCC
Confidence 7899999999999999999998 99998887654
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.95 E-value=0.0091 Score=49.20 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=56.4
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEe-cC-CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~-r~-~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
|++||||| .|-.|+.+.+.|... ..+++.... ++ ..+........-.....-...+.++..+++|+|++++|
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-----P~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p 75 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-----PEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALP 75 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-----TTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-----CCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccc
Confidence 68999999 899999999998764 123544332 22 12222211110000000012466777789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeC-Ccch
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSH-GFLL 216 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aa-G~~l 216 (281)
.....+... .. .+..||+.+ -|.+
T Consensus 76 ~~~s~~~~~----~~-~~~~VIDlSadfRl 100 (176)
T d1vkna1 76 AGASYDLVR----EL-KGVKIIDLGADFRF 100 (176)
T ss_dssp TTHHHHHHT----TC-CSCEEEESSSTTTC
T ss_pred cHHHHHHHH----hh-ccceEEecCccccc
Confidence 976554443 33 466777654 4655
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.86 E-value=0.014 Score=43.05 Aligned_cols=65 Identities=20% Similarity=0.082 Sum_probs=50.2
Q ss_pred cEEEEEccCchHH-HHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG~G~mG~-AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
|+|=|||.|-+|- ++|+.|++. |++|.-.|+...+..+..++.|+... .....+-+.++|+|+..
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~S 67 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKT 67 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEe
Confidence 7899999998886 789999999 99998888776555667788897652 22233557889999874
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.82 E-value=0.023 Score=44.98 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=57.9
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhc-----CcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETI-----SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~---~~~~E~l-----~~AD 180 (281)
+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|........ ...++.. ...|
T Consensus 28 ~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 28 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CC-CEEEEECCCCcHHHHHHHHHHc------CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCC
Confidence 67 9999999999999999999998 864444555555567888998865311110 1122222 3589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCc
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNS 206 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpga 206 (281)
+++-++..... ++..+..++++.
T Consensus 101 ~vid~~G~~~~---~~~a~~~~~~~~ 123 (176)
T d2jhfa2 101 FSFEVIGRLDT---MVTALSCCQEAY 123 (176)
T ss_dssp EEEECSCCHHH---HHHHHHHBCTTT
T ss_pred EEEecCCchhH---HHHHHHHHhcCC
Confidence 99999887543 333444555653
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.58 E-value=0.0087 Score=47.65 Aligned_cols=68 Identities=25% Similarity=0.356 Sum_probs=40.6
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccH--HHHHHC----CceecC-CCcCCHHhhcCcCCE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF--AEARAA----GFTEEN-GTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~--~~A~~~----G~~~~~-~t~~~~~E~l~~ADV 181 (281)
.||+||| .|.+|.++|..|... +. ++.+.+....+.. ..+.+. .+.... -...+ .+.+++||+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~-~~~~~~aDi 73 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG-YEDTAGSDV 73 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC-GGGGTTCSE
T ss_pred CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCC-HHHhhhcCE
Confidence 4899999 699999999999988 65 6666664321111 112111 111000 00123 355789999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|+++.
T Consensus 74 Vvita 78 (142)
T d1o6za1 74 VVITA 78 (142)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99964
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.56 E-value=0.035 Score=47.35 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=36.1
Q ss_pred cccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 104 LPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 104 ~~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+...|+| |++-|.| .|-||.++|+.|.+. |.+|++.+|+..
T Consensus 19 ~~~~l~g-K~alITGas~GIG~aiA~~la~~------Ga~Vii~~r~~~ 60 (294)
T d1w6ua_ 19 PPNSFQG-KVAFITGGGTGLGKGMTTLLSSL------GAQCVIASRKMD 60 (294)
T ss_dssp CTTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHH
Confidence 4468999 9999999 679999999999999 999999888743
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.48 E-value=0.051 Score=42.63 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=52.9
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhc-----CcC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETI-----SGS 179 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l-----~~A 179 (281)
-+| .+|.|+|.|-+|...++.++.. |...++..+..++..+.+++.|....-.... ..++.. ...
T Consensus 27 k~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~ 99 (175)
T d1cdoa2 27 EPG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 99 (175)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCc
Confidence 367 9999999999999999999988 7644555555556688899999643111001 112222 358
Q ss_pred CEEEEccCChhH
Q 023490 180 DLVLLLISDAAQ 191 (281)
Q Consensus 180 DVViLavP~~~~ 191 (281)
|+|+-++-....
T Consensus 100 d~vid~~G~~~~ 111 (175)
T d1cdoa2 100 DFSLECVGNVGV 111 (175)
T ss_dssp SEEEECSCCHHH
T ss_pred ceeeeecCCHHH
Confidence 999999987543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=95.47 E-value=0.011 Score=49.82 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=53.6
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
-|+| |++-|.|.+ .||.++|+.|.+. |++|++.+|...+..+..++.+ .+++.+.
T Consensus 2 ~l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~-----------------~~~~~~~ 57 (241)
T d2a4ka1 2 RLSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREERLLAEAVAALE-----------------AEAIAVV 57 (241)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCC-----------------SSEEEEE
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcC-----------------CceEEEE
Confidence 3789 999999966 5999999999999 9999988876432222222221 2334443
Q ss_pred cC--Chh-HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 IS--DAA-QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP--~~~-~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+- ..+ ..++++++...+.+=.+|+..+|..
T Consensus 58 ~Dls~~~~i~~~~~~i~~~~g~iDiLinnAg~~ 90 (241)
T d2a4ka1 58 ADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVA 90 (241)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCCCEEEEGGGGT
T ss_pred ecCCCHHHHHHHHHHHHHHhCCccEeccccccc
Confidence 32 222 2346666666665555666655543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=95.47 E-value=0.045 Score=45.81 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=57.9
Q ss_pred cCCCcEEEEEcc-C--chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~-G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|+| |++-|.|. | -||.++|+.|.+. |++|++.+|+.. ..+..+ .+.+....+.++..
T Consensus 3 L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~~-~~~~~~------------~l~~~~~~~~~~~~ 62 (274)
T d2pd4a1 3 LKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNES-LEKRVR------------PIAQELNSPYVYEL 62 (274)
T ss_dssp TTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESSTT-THHHHH------------HHHHHTTCCCEEEC
T ss_pred CCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHH------------HHHhhCCceeEeee
Confidence 789 99999996 4 3999999999999 999999888632 222221 22233445556555
Q ss_pred ccCChhH-HHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~~~~-~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
-+..... .++++++.....+=.+++..+|..
T Consensus 63 d~~~~~~~~~~~~~~~~~~g~id~lV~nag~~ 94 (274)
T d2pd4a1 63 DVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFA 94 (274)
T ss_dssp CTTCHHHHHHHHHHHHHHTSCEEEEEECCCCC
T ss_pred cccchhhHHHHHHHHHHHcCCCCeEEeecccc
Confidence 5555443 346777777665544566666644
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=95.41 E-value=0.0049 Score=49.65 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=52.3
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCChh
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~~ 190 (281)
||||||| .|..|+.+.+.|.+.- .+ ...++.....+... ......+............+.++++|+||+|+|...
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~-~~-p~~~i~~~ss~~~~--gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~ 76 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEER-DF-DLIEPVFFSTSQIG--VPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY 76 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTT-GG-GGSEEEEEESSCCS--SBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcC-CC-CceEEEEecccccc--ccccccCCcceeeecccchhhhccccEEEEecCchH
Confidence 6899999 8999999999876420 00 01244333222110 000011111000000122355799999999999877
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCC
Q 023490 191 QADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 191 ~~~vl~ei~~~mKpgaILi~aaG 213 (281)
..++..++... ....+||+.++
T Consensus 77 s~~~~~~l~~~-g~~~~VIDlSs 98 (147)
T d1mb4a1 77 TEKVYPALRQA-GWKGYWIDAAS 98 (147)
T ss_dssp HHHHHHHHHHT-TCCSEEEESSS
T ss_pred HHHHhHHHHHc-CCceEEEeCCc
Confidence 77777665543 23346776544
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.38 E-value=0.078 Score=41.63 Aligned_cols=100 Identities=17% Similarity=0.259 Sum_probs=64.0
Q ss_pred EEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hcCcCCEEEEccCChh
Q 023490 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISDAA 190 (281)
Q Consensus 113 tIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E-~l~~ADVViLavP~~~ 190 (281)
||+|+| .|.||+.+++.+... .++++..+.+.+. +..+ ...++|+||=-+.|..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~-------------------~~~~~~~~~~DvvIDFS~p~~ 56 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGD-------------------PLSLLTDGNTEVVIDFTHPDV 56 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTC-------------------CTHHHHTTTCSEEEECCCTTT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCC-------------------chhhhccccCCEEEEcccHHH
Confidence 799999 699999999987765 1677765554322 1111 2357999999999888
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeCCcchhhhhhcccC--CCCCceEEEeccCCC
Q 023490 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLD--FPKNIGVIAVCPKGM 240 (281)
Q Consensus 191 ~~~vl~ei~~~mKpga-ILi~aaG~~l~~l~~~~~~--~~~~i~VIrvmPntp 240 (281)
..++++....+ |. +|+=..|+.-++++..... -.++++ |...||+.
T Consensus 57 ~~~~~~~~~~~---~~~~ViGTTG~~~~~~~~l~~~~~~~~~ip-il~apNfS 105 (135)
T d1yl7a1 57 VMGNLEFLIDN---GIHAVVGTTGFTAERFQQVESWLVAKPNTS-VLIAPNFT 105 (135)
T ss_dssp HHHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHHHHSCTTCE-EEECSCCG
T ss_pred HHHHHHHHHhc---CCCEEEeccccchhHHHHHHHHHHhcCCCC-EEEcCCcc
Confidence 77777755443 33 4555788885544431101 123444 56778875
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.38 E-value=0.03 Score=44.26 Aligned_cols=75 Identities=11% Similarity=0.017 Sum_probs=40.8
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCC--cEEEEEecCCcccHHHHH-----HCCce--ecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEAR-----AAGFT--EENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G--~~Viig~r~~~~s~~~A~-----~~G~~--~~~~t~~~~~E~l~~ADV 181 (281)
+||.||| .|++|.++|..|.... =.+.. .++...+....+...++. ...+. .......+.++.++++|+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~-~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGS-VFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred eEEEEECCCCHHHHHHHHHHHHHH-hcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 6899999 5999999999887530 00001 133444433221111111 11100 000113467899999999
Q ss_pred EEEccC
Q 023490 182 VLLLIS 187 (281)
Q Consensus 182 ViLavP 187 (281)
|+++.-
T Consensus 83 VVitag 88 (154)
T d5mdha1 83 AILVGS 88 (154)
T ss_dssp EEECCS
T ss_pred EEEecc
Confidence 999653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.38 E-value=0.031 Score=47.55 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=33.2
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+|+| |++-|.| .+-||.++|+.|.+. |++|++.+|..
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~ 40 (258)
T d1ae1a_ 3 SLKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNE 40 (258)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 5899 9999999 667999999999999 99999988764
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.04 Score=44.52 Aligned_cols=76 Identities=20% Similarity=0.104 Sum_probs=42.5
Q ss_pred cEEEEEccCchHHHHHH--HHHhhhhhccCCcEEEEEecCCcccHHH-------HHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAE-------ARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~--~Lra~~~~~~~G~~Viig~r~~~~s~~~-------A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
+||+|||.|+.|.+.+- .+... +...+.++.+.+....+.... ....+...+-....+.+|++++||+|
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~--~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V 80 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT--PGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV 80 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC--GGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc--cccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence 89999999999977432 22221 011124777666653221111 11122111101135889999999999
Q ss_pred EEccCCh
Q 023490 183 LLLISDA 189 (281)
Q Consensus 183 iLavP~~ 189 (281)
+...-..
T Consensus 81 v~~~~~g 87 (171)
T d1obba1 81 INTAMVG 87 (171)
T ss_dssp EECCCTT
T ss_pred eeecccc
Confidence 9986543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.0085 Score=43.56 Aligned_cols=34 Identities=24% Similarity=0.133 Sum_probs=30.7
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
||+|||||.|-.|+=++...+.. |+++++.+...
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGLDA 34 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECTTS
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcCCC
Confidence 69999999999999999999999 99998887653
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.026 Score=46.29 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=34.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..-.+ |+|.|||.|..|-+-|..|... |++|.++++.+
T Consensus 39 ~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAHS 76 (179)
T ss_dssp SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEeccC
Confidence 44567 9999999999999999999999 99999999753
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.31 E-value=0.021 Score=46.87 Aligned_cols=96 Identities=24% Similarity=0.239 Sum_probs=65.0
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCC-CcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENG-TLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~-t~~~~~E~l------~~AD 180 (281)
+| .+|.|+|.|.+|...++.++.. |. +|++.+. .+...+.+++.|...... .-.++.+.+ ...|
T Consensus 25 ~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi~~d~-~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D 96 (195)
T d1kola2 25 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDL-NPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVD 96 (195)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEES-CHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECcCHHHHHHHHHHHhh------cccceeeecc-cchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcE
Confidence 67 9999999999999999999887 77 5555544 445578889998754211 112332222 2489
Q ss_pred EEEEccCChh------------HHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAA------------QADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~------------~~~vl~ei~~~mKpgaILi~aa 212 (281)
+++-++-... ..+.++..+..++|+-.|++.+
T Consensus 97 ~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 97 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 9998875221 2357787888888987776553
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.26 E-value=0.014 Score=45.93 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=61.4
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-c-----CcC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-I-----SGS 179 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~-l-----~~A 179 (281)
+| .+|.|+|. |.+|...++.++.. |. +|++.++. ++..+.+++.|.... +....+..+. . ...
T Consensus 27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~~~~~-~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~ 98 (170)
T d1jvba2 27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIGVDVR-EEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV 98 (170)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CC-CEEEEEeccccceeeeeeccccc------ccccccccccc-hhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence 67 99999995 99999999999988 85 66555544 455677888885321 1112233222 2 247
Q ss_pred CEEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 180 DVViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
|+|+-++.... .++..+..++|+-.+++.
T Consensus 99 d~vid~~g~~~---~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 99 DAVIDLNNSEK---TLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEEESCCCHH---HHTTGGGGEEEEEEEEEC
T ss_pred hhhhcccccch---HHHhhhhhcccCCEEEEe
Confidence 88888877533 455667788888766654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.045 Score=46.37 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=57.8
Q ss_pred cccCCCcEEEEEccCc-hHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~-mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
+.|.| |++-|-|.+. ||.++|+.|.+. |.+|++.+|..++..+.+.+ +.+ ...++..+
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~~~l~~~~~~------------~~~--~~~~~~~~ 61 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINKHGLEETAAK------------CKG--LGAKVHTF 61 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH------------HHH--TTCCEEEE
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH------------HHh--cCCcEEEE
Confidence 56999 9999999765 999999999999 99999988864322121111 111 12344444
Q ss_pred ccCC--hhH-HHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISD--AAQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~--~~~-~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
.+-. .+. .++++++.+...+=.+|+..+|+.
T Consensus 62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCceeEeecccc
Confidence 4433 222 346777777776655777777755
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.13 E-value=0.052 Score=42.81 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.9
Q ss_pred cEEEEEcc-CchHHHHHHHHHhh
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~ 133 (281)
+||.|||. |.+|+++|..|...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 69999996 99999999999875
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.024 Score=45.03 Aligned_cols=71 Identities=21% Similarity=0.151 Sum_probs=41.7
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHC-Cc---e-ecCCCcCCHHhhcCcCCEEEEc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GF---T-EENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~-G~---~-~~~~t~~~~~E~l~~ADVViLa 185 (281)
|||+||| .|.+|.++|..|...+ +...++.+.+..+ ....++.+. .. . ...-...+..+.+++||+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 6899999 5999999998775321 1144777776543 222223221 10 0 0000012345679999999997
Q ss_pred c
Q 023490 186 I 186 (281)
Q Consensus 186 v 186 (281)
.
T Consensus 77 a 77 (145)
T d2cmda1 77 A 77 (145)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.00 E-value=0.098 Score=41.84 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=52.1
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCC--cC-CHHhh-----cCc
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGT--LG-DIYET-----ISG 178 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t--~~-~~~E~-----l~~ 178 (281)
-+| .+|.|+|.|-+|...++.++.. |. +|+ ..+.+++..+.|++.|....-.. .. ..+++ =..
T Consensus 28 ~~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi-~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 28 KPG-STCVVFGLGGVGLSVIMGCKSA------GASRII-GIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceEE-EecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 367 9999999999999999999998 86 555 44455567889999987531000 01 11211 146
Q ss_pred CCEEEEccCChh
Q 023490 179 SDLVLLLISDAA 190 (281)
Q Consensus 179 ADVViLavP~~~ 190 (281)
.|+++.++....
T Consensus 100 ~d~vi~~~g~~~ 111 (176)
T d1d1ta2 100 VGYTFEVIGHLE 111 (176)
T ss_dssp CCEEEECSCCHH
T ss_pred ceEEEEeCCchH
Confidence 899998888654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.96 E-value=0.019 Score=49.06 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=34.0
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.+|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|..+
T Consensus 1 ndL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~ 40 (254)
T d1hdca_ 1 NDLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDE 40 (254)
T ss_dssp CCCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 37999 999999965 6999999999999 999998887643
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=94.93 E-value=0.092 Score=42.70 Aligned_cols=74 Identities=22% Similarity=0.096 Sum_probs=40.9
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccH--HHHHH--CC-ce--ecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF--AEARA--AG-FT--EENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~--~~A~~--~G-~~--~~~~t~~~~~E~l~~ADV 181 (281)
.+|.|+|. |++|.+++..|.... =+|... .+...+....... ..+.+ .. +. ..-....+..+.++++|+
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~-v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv 103 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGE-VFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW 103 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCc-ccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence 58999995 999999999987630 001111 3333343321111 11111 11 00 000114578899999999
Q ss_pred EEEcc
Q 023490 182 VLLLI 186 (281)
Q Consensus 182 ViLav 186 (281)
|++..
T Consensus 104 Vvi~a 108 (175)
T d7mdha1 104 ALLIG 108 (175)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 99976
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=94.88 E-value=0.034 Score=47.70 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=31.8
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
.+|+| ++|.|=|+|+.|..+|+.|.+. |.+|+...+
T Consensus 27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vsD 62 (242)
T d1v9la1 27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD 62 (242)
T ss_dssp SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEeec
Confidence 46999 9999999999999999999999 998765443
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.84 E-value=0.014 Score=46.21 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=30.3
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
-|||.|||.|.-|-+-|..|++. |++|.+.++.
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE 33 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 19999999999999999999999 9999999864
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.79 E-value=0.068 Score=45.08 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=56.0
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|...+..+.+++. .+.. ..+++.+.
T Consensus 6 ~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~------------~~~~-g~~~~~~~ 65 (260)
T d1h5qa_ 6 SFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAADAVEVTEKV------------GKEF-GVKTKAYQ 65 (260)
T ss_dssp CCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTTHHHHHHHH------------HHHH-TCCEEEEE
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH------------HHHh-CCceEEEE
Confidence 6899 999999965 5999999999999 999999888765432222211 1111 23444444
Q ss_pred cCC--h-hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISD--A-AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~--~-~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+-. . ...++++++.....+=.+|+..+|+.
T Consensus 66 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnAg~~ 98 (260)
T d1h5qa_ 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGVS 98 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCcEeccccccc
Confidence 432 2 22346677766664434566666654
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=94.72 E-value=0.051 Score=46.76 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=50.3
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH--HHCCceecCCCcCC----HHhhcCcCCEEEE
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA--RAAGFTEENGTLGD----IYETISGSDLVLL 184 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A--~~~G~~~~~~t~~~----~~E~l~~ADVViL 184 (281)
|||.|+| .|.||.++++.|.+. |++|++..|......... ...|+..-.+...+ ++.++..+|.+++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 8999999 699999999999999 999988888654322222 22344321122222 4567899999999
Q ss_pred ccCCh
Q 023490 185 LISDA 189 (281)
Q Consensus 185 avP~~ 189 (281)
..+..
T Consensus 78 ~~~~~ 82 (350)
T d1xgka_ 78 NTTSQ 82 (350)
T ss_dssp CCCST
T ss_pred ecccc
Confidence 88764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.69 E-value=0.037 Score=46.60 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=32.0
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|..
T Consensus 3 L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~ 39 (242)
T d1ulsa_ 3 LKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEE 39 (242)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 999999964 6999999999999 99999888764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.036 Score=43.78 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=62.9
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| .+|.|+|. |.+|....+.++.. |.+|++..++ ++..+.+++.|.... +..-.++.+.+ +..|
T Consensus 28 ~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence 68 99999995 99999999999998 9998777765 345677888886421 11112333332 2378
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|+-++.. +.+++.+..++++-.++..
T Consensus 100 ~v~d~~g~----~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 100 IIIEMLAN----VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEESCHH----HHHHHHHHHEEEEEEEEEC
T ss_pred EEeecccH----HHHHHHHhccCCCCEEEEE
Confidence 88877652 3566777788887766543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.60 E-value=0.031 Score=43.74 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=42.0
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEE--EEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVV--KVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLL 184 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~V--iig~r~~~~s~~~A~~~G~~~~~~t~~---~~~E~l~~ADVViL 184 (281)
|+||.|.| .|.+|+.+++.|.+. |++| +...|... ... ....++....+... +..++++++|.|+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~------g~~v~v~~~~R~~~-~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 74 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEG------SDKFVAKGLVRSAQ-GKE-KIGGEADVFIGDITDADSINPAFQGIDALVI 74 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHT------TTTCEEEEEESCHH-HHH-HTTCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHC------CCcEEEEEEcCCHH-HHH-hccCCcEEEEeeeccccccccccccceeeEE
Confidence 79999999 799999999999998 8653 33334322 111 11122111011122 34567899999987
Q ss_pred cc
Q 023490 185 LI 186 (281)
Q Consensus 185 av 186 (281)
+.
T Consensus 75 ~a 76 (252)
T d2q46a1 75 LT 76 (252)
T ss_dssp CC
T ss_pred EE
Confidence 65
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.60 E-value=0.022 Score=45.47 Aligned_cols=89 Identities=21% Similarity=0.215 Sum_probs=61.2
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH---hhcCcCCEEEE
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLL 184 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~---E~l~~ADVViL 184 (281)
+| ++|.|.|. |.+|....+.++.. |.+|+...+.. +..+.+++.|....-. ..+.. ..-..+|+|+=
T Consensus 27 ~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~~-~~~~~~~~lGa~~~i~-~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASRP-EKLALPLALGAEEAAT-YAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESSG-GGSHHHHHTTCSEEEE-GGGHHHHHHHTTSEEEEEE
T ss_pred CC-CEEEEEeccccchhhhhhhhccc------ccccccccccc-cccccccccccceeee-hhhhhhhhhcccccccccc
Confidence 78 99999995 99999999999999 99988777654 3457788888643100 11211 22356888887
Q ss_pred ccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 185 avP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
++.+ .+++.++.++++-.++..
T Consensus 98 ~~G~-----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 98 VRGK-----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp CSCT-----THHHHHTTEEEEEEEEEC
T ss_pred ccch-----hHHHHHHHHhcCCcEEEE
Confidence 7653 245667788887766543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.54 E-value=0.078 Score=44.27 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=32.9
Q ss_pred cccCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+|+| |++-|.|.+ -||.++|+.|.+. |++|++.++..
T Consensus 4 ~~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~~ 44 (256)
T d1ulua_ 4 VDLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQAE 44 (256)
T ss_dssp ECCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESSG
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCcH
Confidence 47999 999999975 3999999999999 99998887763
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.048 Score=47.39 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=60.3
Q ss_pred ccccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 023490 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVVi 183 (281)
+.-|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|..++..+.+.+..-. . ......+++.
T Consensus 7 ~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~el~~~--------~-~~~~~~~~~~ 70 (297)
T d1yxma1 7 PGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADELQAN--------L-PPTKQARVIP 70 (297)
T ss_dssp TTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHT--------S-CTTCCCCEEE
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhh--------h-ccccCceEEE
Confidence 466999 999999955 6999999999999 999999888643322222221000 0 0122456666
Q ss_pred EccCCh---hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 184 LLISDA---AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 184 LavP~~---~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+.+-.+ ...++++++.....+=.+|+..+|+.
T Consensus 71 ~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~~ 105 (297)
T d1yxma1 71 IQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQ 105 (297)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EeccCCCHHHHHHHHHHHHHHhCCeEEEEeecccc
Confidence 665432 23347777766665555777766654
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=94.51 E-value=0.055 Score=46.07 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=55.2
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
.+|+| |++-|.| .+-||.++|+.|.+. |++|++.+|..++..+...+ .+.+ ...+++.+
T Consensus 3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~~~~~~~~~-----------~~~~--~g~~~~~~ 62 (261)
T d1geea_ 3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKEDEANSVLE-----------EIKK--VGGEAIAV 62 (261)
T ss_dssp GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCHHHHHHHHH-----------HHHH--TTCEEEEE
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHH-----------HHHh--cCCcEEEE
Confidence 57999 9999999 457999999999999 99999988875322221111 1111 12344444
Q ss_pred ccCCh---hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISDA---AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~~---~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
.+-.. ...++++++.....+=.+|+..+|+.
T Consensus 63 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 96 (261)
T d1geea_ 63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLE 96 (261)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EccCCCHHHHHHHHHHHHHHhCCCCEeeccceec
Confidence 43332 22346666666554434677666654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.37 E-value=0.068 Score=45.24 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=35.6
Q ss_pred ccccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc
Q 023490 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (281)
Q Consensus 105 ~~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~ 152 (281)
...|+| |++-|.| .+-||.++|+.|.+. |++|++.+++.++
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~ 54 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTE 54 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHH
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchH
Confidence 356999 9999999 679999999999999 9999888877543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.068 Score=45.26 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=34.1
Q ss_pred ccccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.-|+| |++-|.|.+ -||.++|+.|.+. |++|++..|..
T Consensus 9 ~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~ 48 (269)
T d1xu9a_ 9 PEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSK 48 (269)
T ss_dssp GGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred ccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 355999 999999966 5999999999999 99999888864
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.092 Score=44.37 Aligned_cols=92 Identities=17% Similarity=0.052 Sum_probs=55.7
Q ss_pred cccccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 104 ~~~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
+|..|+| |++-|.|. +-||.++|+.|.+. |++|++.+|...+ .+.+.+ .+.+.-...+++
T Consensus 4 ~M~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~~~~-l~~~~~-----------~l~~~~~~~~~~ 64 (257)
T d1xg5a_ 4 GMERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCARTVGN-IEELAA-----------ECKSAGYPGTLI 64 (257)
T ss_dssp TCGGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHH-----------HHHHTTCSSEEE
T ss_pred CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHhcCCCceEE
Confidence 3567999 99999995 48999999999999 9999888876322 222111 111111123455
Q ss_pred EEccCCh--h-HHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 183 LLLISDA--A-QADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 183 iLavP~~--~-~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
.+.+-.. + ..++++++.....+=.+|+..+|+
T Consensus 65 ~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 65 PYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred EEEccCCCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 5544332 2 234666666555443466666664
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.025 Score=52.29 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=53.7
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC------------------Cc-ccHHHH---HHC--C-
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------GS-RSFAEA---RAA--G- 161 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~------------------~~-~s~~~A---~~~--G- 161 (281)
|++ ++|.|||+|-+|..++++|... |+ ++.+.+.. +. +....+ .+. .
T Consensus 35 l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v 107 (426)
T d1yovb1 35 LDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNC 107 (426)
T ss_dssp HHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTC
T ss_pred Hhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCC
Confidence 677 8999999999999999999887 65 45666532 10 111111 111 1
Q ss_pred -ceecCCCc-CCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 162 -FTEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 162 -~~~~~~t~-~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
+....... ...++.+++.|+|+.++-.......+++..
T Consensus 108 ~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c 147 (426)
T d1yovb1 108 NVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGML 147 (426)
T ss_dssp CCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred ceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence 11111111 123578999999999998877777777543
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.31 E-value=0.08 Score=42.79 Aligned_cols=75 Identities=21% Similarity=0.039 Sum_probs=40.6
Q ss_pred cEEEEEccCchHHHHH--HHHHhhhhhccCCcEEEEEecCCcccHHHH-------HHCCceecCCCcCCHHhhcCcCCEE
Q 023490 112 NQIGVIGWGSQGPAQA--QNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------RAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA--~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-------~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
.||+|||.|+.|.+.+ ..++.. ++. .+-++.+.+...++....+ ...+.........+.+|++++||+|
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~-~~l-~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHL-EEF-PIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTT-TTS-CEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhh-hhc-CCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 6899999999886533 333222 110 0125666665432211111 1112111011245888999999999
Q ss_pred EEccCC
Q 023490 183 LLLISD 188 (281)
Q Consensus 183 iLavP~ 188 (281)
+++.-.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 998754
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.30 E-value=0.027 Score=44.63 Aligned_cols=69 Identities=9% Similarity=0.037 Sum_probs=46.7
Q ss_pred cCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 023490 108 FNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (281)
Q Consensus 108 l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVV 182 (281)
|+| .||+|||=+ +...+++..+..+ |+++++...+.. .......+.|...+ ...+++|+++++|+|
T Consensus 1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~d~~eai~~aDvv 71 (153)
T d1pg5a2 1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPVK--EVENPFEVINEVDVL 71 (153)
T ss_dssp STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCEE--EESCGGGTGGGCSEE
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeEE--EEeCHHHHhhcCCeE
Confidence 579 999999964 4899999999988 987655444321 11222333332211 146899999999998
Q ss_pred EEc
Q 023490 183 LLL 185 (281)
Q Consensus 183 iLa 185 (281)
...
T Consensus 72 y~~ 74 (153)
T d1pg5a2 72 YVT 74 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.27 E-value=0.037 Score=43.49 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=51.9
Q ss_pred cCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 023490 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 108 l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~~G~~~~~~t~~~~~E~l~~AD 180 (281)
|+| +||+|||= ++...+++..+..+ |+++.+...+.. ...+.+.+.+...+ ...+++++++++|
T Consensus 2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~av~~aD 72 (157)
T d1ml4a2 2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGKLD 72 (157)
T ss_dssp SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTTCS
T ss_pred cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccce--eecCHHHhhccCc
Confidence 689 99999996 67899999999988 999888766532 11233344443211 1468999999999
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
+|....--
T Consensus 73 vvy~~~~~ 80 (157)
T d1ml4a2 73 VLYVTRIQ 80 (157)
T ss_dssp EEEECCCC
T ss_pred EEEeeccc
Confidence 98886543
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=94.26 E-value=0.051 Score=42.96 Aligned_cols=71 Identities=8% Similarity=0.037 Sum_probs=50.1
Q ss_pred cCCCcEEEEEcc--CchHHHHHHHHHhhhhhccCCcEEEEEecCCc----cc----HHHHHHCCceecCCCcCCHHhhcC
Q 023490 108 FNGINQIGVIGW--GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RS----FAEARAAGFTEENGTLGDIYETIS 177 (281)
Q Consensus 108 l~G~ktIGIIG~--G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s----~~~A~~~G~~~~~~t~~~~~E~l~ 177 (281)
|+| ++|++||= .++-.+++..+..+ |+++.+...++- .. .+.+.+.+...+ ...+++++++
T Consensus 1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~--~~~d~~~ai~ 71 (161)
T d1vlva2 1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVS--FTSNLEEALA 71 (161)
T ss_dssp STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEE--EESCHHHHHT
T ss_pred CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCceE--EEecHHHhhh
Confidence 689 99999994 47999999999998 999887765421 11 112333332210 1468999999
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
++|+|..-.-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999998654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.24 E-value=0.057 Score=42.47 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=64.4
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| .+|.|.| .|.+|...++.++.. |.+|++..+.. +..+.+++.|...- +....++.+.+ +..|
T Consensus 25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~~-~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGSD-AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCCcccccchhhccc------cccceeeeccc-ccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 57 8999988 599999999999999 99988877754 34677888875421 11122343433 4589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|+-++... .+++.+..++++..++..
T Consensus 97 ~v~d~~g~~----~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 97 VVLNSLAGE----AIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEECCCTH----HHHHHHHTEEEEEEEEEC
T ss_pred EEEecccch----HHHHHHHHhcCCCEEEEE
Confidence 999988842 455666788887776654
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.18 E-value=0.041 Score=46.64 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=54.0
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.|+| |++-|-|. +-||.++|+.|.+. |++|++.+|..++..+.+.+.+ . .+..+.
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~~~---------------~--~~~~~~ 58 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDEEGKAMAAELA---------------D--AARYVH 58 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTG---------------G--GEEEEE
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhh---------------C--cceEEE
Confidence 4899 99999995 56999999999999 9999988876433222222211 1 122232
Q ss_pred c--CChh-HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 I--SDAA-QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 v--P~~~-~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+ -+.+ ..++++++.....+=.+|+..+|+.
T Consensus 59 ~Dv~~~~~v~~~~~~~~~~~g~idilinnAG~~ 91 (244)
T d1nffa_ 59 LDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGIL 91 (244)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred eecCCHHHHHHHHHHHHHHhCCCeEEEECCccc
Confidence 2 2222 3346777766665545777777754
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.14 E-value=0.048 Score=44.45 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=50.3
Q ss_pred cCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhcC
Q 023490 108 FNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (281)
Q Consensus 108 l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~----~~s~~~----A~~~G~~~~~~t~~~~~E~l~ 177 (281)
|+| .||++||=| ++..+++..+..+ |+++.+...++ ....+. +.+.|...+ ...+++|+++
T Consensus 3 l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~eai~ 73 (185)
T d1dxha2 3 LHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLT--LTEDPKEAVK 73 (185)
T ss_dssp GGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEE--EESCHHHHTT
T ss_pred CCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEE--EEeChhhccc
Confidence 788 999999954 8999999999998 99998887643 111222 223343221 1468999999
Q ss_pred cCCEEEEcc
Q 023490 178 GSDLVLLLI 186 (281)
Q Consensus 178 ~ADVViLav 186 (281)
++|+|..-.
T Consensus 74 ~aDvVyt~~ 82 (185)
T d1dxha2 74 GVDFVHTDV 82 (185)
T ss_dssp TCSEEEECC
T ss_pred cccEEEeeh
Confidence 999998754
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.13 E-value=0.02 Score=44.85 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC
Q 023490 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG 150 (281)
Q Consensus 110 G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~ 150 (281)
+ |||.|||.|..|-..|..|++. |+ +|.+.++.+
T Consensus 4 ~-~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 S-AKIALLGAGPASISCASFLARL------GYSDITIFEKQE 38 (196)
T ss_dssp G-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESSS
T ss_pred C-CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEecC
Confidence 5 8999999999999999999999 98 588888764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.09 E-value=0.034 Score=47.11 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=52.6
Q ss_pred cCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 108 l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|+| |++-|.|. +-||.++|+.|.+. |++|++.+|+.++..+.+.+.| .+++.+.+
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~~-----------------~~~~~~~~ 58 (256)
T d1k2wa_ 3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLEAARATAAEIG-----------------PAACAIAL 58 (256)
T ss_dssp TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHHHHHHHHHHHC-----------------TTEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhC-----------------CceEEEEe
Confidence 889 99999995 58999999999999 9999988876432222222222 22333333
Q ss_pred C--C-hhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 187 S--D-AAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 187 P--~-~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
- + ....++++++.....+=.+|+..+|+.
T Consensus 59 Dvt~~~~v~~~~~~~~~~~g~iDilVnnAg~~ 90 (256)
T d1k2wa_ 59 DVTDQASIDRCVAELLDRWGSIDILVNNAALF 90 (256)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred eCCCHHHHHHHHHHHHHHhCCccEEEeecccc
Confidence 2 2 223346666665554434666666643
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=94.07 E-value=0.021 Score=45.48 Aligned_cols=65 Identities=20% Similarity=0.207 Sum_probs=47.8
Q ss_pred cCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 023490 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (281)
Q Consensus 108 l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViL 184 (281)
|+| .+|++||= +++..+++..+..+ |+++.+..++.-. ..+..+.. ..+++|+++++|+|..
T Consensus 1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~~~----~~~~~~~~----~~~~~ea~~~aDviy~ 65 (151)
T d2at2a2 1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQ----DEENTFGT----YVSMDEAVESSDVVML 65 (151)
T ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCchhh----ccccceeE----EEechhccccCceeee
Confidence 578 99999995 57999999999998 9998777654311 11222332 4588999999999987
Q ss_pred ccC
Q 023490 185 LIS 187 (281)
Q Consensus 185 avP 187 (281)
-.-
T Consensus 66 ~r~ 68 (151)
T d2at2a2 66 LRI 68 (151)
T ss_pred eEE
Confidence 433
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.01 E-value=0.1 Score=41.78 Aligned_cols=95 Identities=11% Similarity=0.213 Sum_probs=55.5
Q ss_pred CcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEE-EEecC----CcccHHHHHH--CCceec-CCCcCCHHhhcCcCCE
Q 023490 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRK----GSRSFAEARA--AGFTEE-NGTLGDIYETISGSDL 181 (281)
Q Consensus 111 ~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Vi-ig~r~----~~~s~~~A~~--~G~~~~-~~t~~~~~E~l~~ADV 181 (281)
|++|+||| .|-.|+.+.+.|... ..+++. +..+. ..+....... .+.... .....+.++...+.|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-----P~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-----PHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-----CCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence 68999999 899999999999874 124443 22221 1122221110 011100 0002244556788999
Q ss_pred EEEccCChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 182 ViLavP~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
+++++|.....+....... .+..+++.++
T Consensus 76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSa 104 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSG 104 (179)
T ss_dssp EEECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred eeccccchhHHHHhhhhhh---cCceeecccc
Confidence 9999998776666555433 5777776544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.01 E-value=0.14 Score=43.22 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=53.9
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|..++ .++..+ ++.+ ...++..+.
T Consensus 5 ~L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~-----------~~~~--~g~~~~~~~ 63 (259)
T d2ae2a_ 5 NLEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRNQKE-LNDCLT-----------QWRS--KGFKVEASV 63 (259)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHH-----------HHHH--TTCEEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHh--cCCCceEEE
Confidence 5889 999999965 6999999999999 9999988875322 222111 1111 122333333
Q ss_pred cC--Chh-HHHHHHHHHhcCC-CCcEEEEeCCcc
Q 023490 186 IS--DAA-QADNYEKIFSCMK-PNSILGLSHGFL 215 (281)
Q Consensus 186 vP--~~~-~~~vl~ei~~~mK-pgaILi~aaG~~ 215 (281)
+- +.+ ..++++++..... +=.+|+..+|+.
T Consensus 64 ~Dv~~~~~v~~~~~~~~~~~~~~idilvnnAG~~ 97 (259)
T d2ae2a_ 64 CDLSSRSERQELMNTVANHFHGKLNILVNNAGIV 97 (259)
T ss_dssp CCTTCHHHHHHHHHHHHHHTTTCCCEEEECCCCC
T ss_pred eeCCCHHHHHHHHHHHHHHhCCCceEEEECCcee
Confidence 32 222 3346677766664 345677777754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=93.99 E-value=0.073 Score=44.74 Aligned_cols=87 Identities=23% Similarity=0.169 Sum_probs=52.9
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+|+| |++-|-|. +-||.++|+.|.+. |++|++.+|..++..+.+++.+ .++..+.+=
T Consensus 1 dl~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~~~l~~~~~~~~---------------~~~~~~~~D 58 (243)
T d1q7ba_ 1 NFEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSENGAQAISDYLG---------------ANGKGLMLN 58 (243)
T ss_dssp CCTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHG---------------GGEEEEECC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhC---------------CCCcEEEEE
Confidence 5899 99999995 47999999999999 9999888876332222222211 111222222
Q ss_pred cCChh-HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAA-QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~-~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+-+.+ ..++++++.....+=.+|+..+|+.
T Consensus 59 v~~~~~v~~~~~~~~~~~g~iDilVnnAg~~ 89 (243)
T d1q7ba_ 59 VTDPASIESVLEKIRAEFGEVDILVNNAGIT 89 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred ecCHHHhhhhhhhhhcccCCcceehhhhhhc
Confidence 22323 3457777766664444666666644
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.17 Score=41.74 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.8
Q ss_pred cCCCcEEEEEccCc---hHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 108 l~G~ktIGIIG~G~---mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|+| |++-|.|.+. ||.++|+.|.+. |++|++.+++.
T Consensus 3 L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND 41 (258)
T ss_dssp TTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESST
T ss_pred CCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 789 9999999764 889999999999 99999888763
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=93.95 E-value=0.033 Score=46.35 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=34.0
Q ss_pred ccCCCcEEEEEcc-Cc--hHHHHHHHHHhhhhhccCCcEEEEEecCCccc
Q 023490 107 AFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~--mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s 153 (281)
-|+| |++-|.|. |. ||.++|+.|.+. |.+|++.++...+.
T Consensus 3 ~l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 3 LLDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL 45 (268)
T ss_dssp TTTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence 3789 99999995 65 999999999999 99999888776543
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.94 E-value=0.084 Score=42.00 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=59.1
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCc----ccHHHHHH----CCceecCCCcCCHHhhcCc
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARA----AGFTEENGTLGDIYETISG 178 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s~~~A~~----~G~~~~~~t~~~~~E~l~~ 178 (281)
|+| ++|++||=| ++..+++..+..+ |+++.++..+.- +..+.+++ .+... ....+.+|++++
T Consensus 2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~ea~~~ 72 (163)
T d1pvva2 2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSF--ELLHDPVKAVKD 72 (163)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEESCHHHHTTT
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceE--EEecCHHHHhhh
Confidence 789 999999955 7889999999998 999887765421 11122222 12111 114689999999
Q ss_pred CCEEEEccC------Ch-hH-HHHH------HHHHhcCCCCcEEE
Q 023490 179 SDLVLLLIS------DA-AQ-ADNY------EKIFSCMKPNSILG 209 (281)
Q Consensus 179 ADVViLavP------~~-~~-~~vl------~ei~~~mKpgaILi 209 (281)
+|+|..-.= .. +. ...+ .+.+..+|++++|.
T Consensus 73 adviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iim 117 (163)
T d1pvva2 73 ADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFM 117 (163)
T ss_dssp CSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEE
T ss_pred ccEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEe
Confidence 999987431 11 11 1111 25667777777765
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.92 E-value=0.015 Score=45.90 Aligned_cols=90 Identities=14% Similarity=0.038 Sum_probs=52.5
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccC-CcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~-G~~Viig~r~~~--~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
++||||| .|..|+.+.+.|... .+ ..++.....+.. +...... ..... .....+...++|++++++|
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~----~hP~~~l~~~~s~~~~Gk~i~~~~-~~~~~----~~~~~~~~~~~d~vf~a~p 73 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDER----DFPLHRLHLLASAESAGQRMGFAE-SSLRV----GDVDSFDFSSVGLAFFAAA 73 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT----TCCCSCEEEEECTTTTTCEEEETT-EEEEC----EEGGGCCGGGCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCCceEEEEEeecccCCcceeecc-ccchh----ccchhhhhccceEEEecCC
Confidence 6899999 599999999999643 00 124433322211 1000000 00110 1122355789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....++..+.. +.|.+|++.++
T Consensus 74 ~~~s~~~~~~~~---~~g~~VID~Ss 96 (144)
T d2hjsa1 74 AEVSRAHAERAR---AAGCSVIDLSG 96 (144)
T ss_dssp HHHHHHHHHHHH---HTTCEEEETTC
T ss_pred cchhhhhccccc---cCCceEEeech
Confidence 876666665543 46788888766
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.92 E-value=0.031 Score=44.59 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=30.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
++|.|||.|..|-+.|..|.+. |++|.+.++.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7899999999999999999999 9999999875
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=93.90 E-value=0.092 Score=44.30 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=33.2
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
-|+| |++-|-| .+-||.++|+.|.+. |++|++.+++.+
T Consensus 2 ~l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~~ 40 (248)
T d2d1ya1 2 LFAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRPE 40 (248)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSTT
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 3789 9999999 568999999999999 999998888743
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.86 E-value=0.043 Score=46.61 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=32.5
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.|+| |++-|.|.+ -||.++|+.|.+. |++|++.++..
T Consensus 3 rL~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 40 (268)
T d2bgka1 3 RLQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIAD 40 (268)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 5899 999999954 6999999999999 99999888764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.86 E-value=0.16 Score=42.97 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=55.6
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|+| |++-|-|.+ -||.++|+.|.+. |++|++.+|..++ .+...+ .+.+.-.+..++.+.+
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~-l~~~~~-----------~~~~~~~~~~~~~~~~ 62 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSSEG-LEASKA-----------AVLETAPDAEVLTTVA 62 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHH-----------HHHHHCTTCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHhhCCCCeEEEEec
Confidence 789 999999955 6999999999999 9999988876432 221111 1222233445555544
Q ss_pred CC---hhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 187 SD---AAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 187 P~---~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
-. ....++++++...+.+=.+|+..+|+.
T Consensus 63 Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 94 (258)
T d1iy8a_ 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGIE 94 (258)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 32 223346666666554444677666643
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.05 Score=45.15 Aligned_cols=49 Identities=20% Similarity=0.119 Sum_probs=39.4
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G 161 (281)
+.|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|+.++..+.+++.+
T Consensus 1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~l~ 50 (248)
T d2o23a1 1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKKLG 50 (248)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHHHC
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHHhC
Confidence 36899 999999955 6999999999999 9999998888665555555443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.69 E-value=0.12 Score=43.57 Aligned_cols=89 Identities=17% Similarity=0.106 Sum_probs=54.0
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
+|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|..++..+.+.+ +.+.. ..+++.+.
T Consensus 2 ~l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~------------l~~~~-g~~~~~~~ 61 (251)
T d1vl8a_ 2 DLRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLEEASEAAQK------------LTEKY-GVETMAFR 61 (251)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH------------HHHHH-CCCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH------------HHHHh-CCcEEEEE
Confidence 5899 999999965 6999999999999 99999988764322211111 11111 23444444
Q ss_pred cCCh--h-HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDA--A-QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~--~-~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+-.. + ..++++++.....+=.+|+..+|+.
T Consensus 62 ~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGIN 94 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4332 2 2346666655554434666666653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.1 Score=44.06 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=33.3
Q ss_pred cccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 106 ~~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
..|+| |++-|-|. +-||.++|+.|.+. |.+|++.+|..
T Consensus 2 ~rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 40 (250)
T d1ydea1 2 TRYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDE 40 (250)
T ss_dssp CTTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 45899 99999995 68999999999999 99999888763
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.39 E-value=0.17 Score=42.69 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=53.1
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.|+| |++-|.|.+ -||.++|+.|.+. |++|++.++..+ ..+...+ ++.+ ...++..+.
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~-~l~~~~~-----------~~~~--~g~~~~~~~ 60 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMNRE-ALEKAEA-----------SVRE--KGVEARSYV 60 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHH-----------HHHT--TTSCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHH-----------HHHh--cCCcEEEEE
Confidence 4899 999999965 6999999999999 999988887532 2222211 1111 123444444
Q ss_pred cCC---hhHHHHHHHHHhcCCCCcEEEEeCCc
Q 023490 186 ISD---AAQADNYEKIFSCMKPNSILGLSHGF 214 (281)
Q Consensus 186 vP~---~~~~~vl~ei~~~mKpgaILi~aaG~ 214 (281)
+-. ....++++++.....+=.+|+..+|+
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 61 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCeehhhhcc
Confidence 432 22234666666555443466666664
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.26 E-value=0.14 Score=42.89 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=33.2
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|..+
T Consensus 2 dl~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~ 40 (242)
T d1cyda_ 2 NFSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNS 40 (242)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 5899 999999954 6999999999999 999998887643
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.23 E-value=0.041 Score=44.70 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=30.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
|+|.|||.|.-|-+.|..|.+. |++|.+.++.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 8999999999999999999999 9999999865
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.19 E-value=0.15 Score=42.80 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=53.4
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|...+..+...+ .+.+ -...+++.+.+
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~~~~~~~~-----------~~~~-~~g~~~~~~~~ 62 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAAEIEKVRA-----------GLAA-QHGVKVLYDGA 62 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHHHHHHHHH-----------HHHH-HHTSCEEEECC
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHH-----------HHHH-hcCCcEEEEEC
Confidence 688 988888855 5999999999999 99999888865332222111 0111 11234555544
Q ss_pred CChh---HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 187 SDAA---QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 187 P~~~---~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
-... ..++++++.....+=.+|+..+|+.
T Consensus 63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 94 (260)
T d1x1ta1 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQ 94 (260)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeecccc
Confidence 3322 2346666655554434677666654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.16 E-value=0.05 Score=46.09 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=53.2
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.|+| |++-|.|.+ -||.++|+.|.+. |++|++.++..++..+.+.+. ....+.+.
T Consensus 3 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 58 (253)
T d1hxha_ 3 RLQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDINEAAGQQLAAEL-----------------GERSMFVR 58 (253)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHH-----------------CTTEEEEC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHh-----------------CCCeEEEE
Confidence 5899 999999954 6999999999999 999988877532211112111 12233443
Q ss_pred cCC---hhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISD---AAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~---~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+-. ....++++++.....+=.+|+..+|+.
T Consensus 59 ~Dv~~~~~~~~~~~~~~~~~g~iDilVnnAG~~ 91 (253)
T d1hxha_ 59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGIL 91 (253)
T ss_dssp CCTTCHHHHHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred eecCCHHHHHHHHHHHHHHhCCCCeEEeccccc
Confidence 322 223346666666655545677777754
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=93.12 E-value=0.098 Score=44.59 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=32.3
Q ss_pred cCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 108 l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|+| |++-|-|. +-||.++|+.|.+. |++|++.+|..
T Consensus 3 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 39 (276)
T d1bdba_ 3 LKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSA 39 (276)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 99999994 68999999999999 99999988763
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.09 E-value=0.053 Score=45.31 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=54.1
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC------------------CcccHHHHH----HC-
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------GSRSFAEAR----AA- 160 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~------------------~~~s~~~A~----~~- 160 (281)
...|+. ++|.|||+|-+|..++..|... |. ++.+.|.. +....+.++ +.
T Consensus 25 Q~kL~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~n 97 (247)
T d1jw9b_ 25 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 97 (247)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhh
Confidence 345888 9999999999999999999998 77 55555432 111111111 10
Q ss_pred -Cceec--CCC--cCCHHhhcCcCCEEEEccCChhHHHHHHHHH
Q 023490 161 -GFTEE--NGT--LGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (281)
Q Consensus 161 -G~~~~--~~t--~~~~~E~l~~ADVViLavP~~~~~~vl~ei~ 199 (281)
....+ ... .....+.+...|+|+.++........+++..
T Consensus 98 p~~~i~~~~~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~ 141 (247)
T d1jw9b_ 98 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC 141 (247)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccccccccceeeeccchhhhhhhHHHHH
Confidence 11110 000 1124466788999999988766666777544
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.06 E-value=0.034 Score=44.08 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=29.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
|+|.|||.|.-|-+.|..|.+. |++|++.++.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 5799999999999999999999 9999999865
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.084 Score=44.40 Aligned_cols=37 Identities=24% Similarity=0.063 Sum_probs=31.6
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
+.| |++-|.|.+ -||.++|+.|.+. |.+|++.+|..+
T Consensus 1 i~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~ 38 (254)
T d2gdza1 1 VNG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLE 38 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 468 999999964 6999999999999 999998888643
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.95 E-value=0.14 Score=43.47 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=52.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEecCC--------cc--cH-HHHHHCCceec--CCCcCC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKG--------SR--SF-AEARAAGFTEE--NGTLGD 171 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~r~~--------~~--s~-~~A~~~G~~~~--~~t~~~ 171 (281)
.+++| +++.|=|+|++|..+|+.|. +. |.+|+...+.. -. .. +...+.+.... +....+
T Consensus 27 ~~l~g-~~vaIqG~GnVG~~~a~~L~~e~------Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~ 99 (234)
T d1b26a1 27 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERIT 99 (234)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHHH------CCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEEC
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------CCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeec
Confidence 57899 99999999999999999995 67 88776444321 01 01 11112221110 111235
Q ss_pred HHhhcC-cCCEEEEccCChhHHHHHHHHHhcCCC
Q 023490 172 IYETIS-GSDLVLLLISDAAQADNYEKIFSCMKP 204 (281)
Q Consensus 172 ~~E~l~-~ADVViLavP~~~~~~vl~ei~~~mKp 204 (281)
.++.+. +|||++-|--...+. ++..+.++-
T Consensus 100 ~~~~~~~~~DI~~PcA~~~~I~---~~~a~~l~~ 130 (234)
T d1b26a1 100 NEELLELDVDILVPAALEGAIH---AGNAERIKA 130 (234)
T ss_dssp HHHHHTSCCSEEEECSCTTCBC---HHHHTTCCC
T ss_pred cccccccccceeecchhccccc---HHHHHHhhh
Confidence 566655 899988775544321 245555654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=92.94 E-value=0.051 Score=46.72 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=31.2
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.||+|+|||.|.-|-+.|..|++. +.+.+|++.++..
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECCC
Confidence 3479999999999999999999876 2236899998874
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=92.91 E-value=0.25 Score=41.27 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=33.0
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
.|+| |++-|.|.+ -||.++|+.|.+. |++|++.++...
T Consensus 2 rL~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 2 RLKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPA 40 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCch
Confidence 3889 999999965 6999999999999 999999888654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=92.86 E-value=0.17 Score=41.35 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=48.1
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcc-cH------HHHHHCCceecCCCcCC---HHhhcCcCC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF------AEARAAGFTEENGTLGD---IYETISGSD 180 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~-s~------~~A~~~G~~~~~~t~~~---~~E~l~~AD 180 (281)
+||.|+| .|.+|..+++.|.+. |++|++..|.... .. ......++....+...+ ..+.++++|
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 6799999 699999999999999 9999888775421 11 11223344321122223 456889999
Q ss_pred EEEEccCC
Q 023490 181 LVLLLISD 188 (281)
Q Consensus 181 VViLavP~ 188 (281)
.++.+.+.
T Consensus 78 ~~~~~~~~ 85 (312)
T d1qyda_ 78 VVISALAG 85 (312)
T ss_dssp EEEECCCC
T ss_pred hhhhhhhh
Confidence 99987765
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=92.72 E-value=0.31 Score=40.95 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=33.0
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~ 152 (281)
+|+| |++-|.|.. -||.++|+.|.+. |.+|++..|+.++
T Consensus 2 ~l~g-K~vlITGgs~GIG~~~A~~la~~------G~~vii~~r~~~~ 41 (254)
T d1sbya1 2 DLTN-KNVIFVAALGGIGLDTSRELVKR------NLKNFVILDRVEN 41 (254)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------CCSEEEEEESSCC
T ss_pred CCCC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEECCccc
Confidence 5899 999999966 5999999999999 9988777666543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.46 E-value=0.14 Score=43.03 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=33.0
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcc
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~ 152 (281)
-|+| |++-|.|.+ -||.++|+.|.+. |++|++..++.++
T Consensus 3 ~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~ 42 (259)
T d1ja9a_ 3 PLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSK 42 (259)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChH
Confidence 4899 999999955 6999999999999 9999887776543
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.13 Score=41.48 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=51.1
Q ss_pred ccCCCcEEEEEccC--chHHHHHHHHHhhhhhccCCcEEEEEecCCc----cc----HHHHHHCCceecCCCcCCHHhhc
Q 023490 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RS----FAEARAAGFTEENGTLGDIYETI 176 (281)
Q Consensus 107 ~l~G~ktIGIIG~G--~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~----~s----~~~A~~~G~~~~~~t~~~~~E~l 176 (281)
.|.| .+|++||=| ++..+++..+..+ |+++.+...++- .. .+.+...|... ....++++++
T Consensus 2 ~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 72 (183)
T d1duvg2 2 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKGV 72 (183)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHHH
T ss_pred CcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCce--EEEechhhcc
Confidence 4788 999999965 7999999999999 999888765421 11 12233444332 1246899999
Q ss_pred CcCCEEEEccC
Q 023490 177 SGSDLVLLLIS 187 (281)
Q Consensus 177 ~~ADVViLavP 187 (281)
+++|+|..-+=
T Consensus 73 ~~aDvvyt~~w 83 (183)
T d1duvg2 73 EGADFIYTDVW 83 (183)
T ss_dssp TTCSEEEECCS
T ss_pred ccCCEEEEEeh
Confidence 99999987443
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.45 E-value=0.078 Score=39.97 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.1
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+| |+|.|||.|..|-.+|..|++. +...+|.+.++.
T Consensus 1 ~g-krivIvGgG~~G~e~A~~l~~~----~~~~~Vtlie~~ 36 (186)
T d1fcda1 1 AG-RKVVVVGGGTGGATAAKYIKLA----DPSIEVTLIEPN 36 (186)
T ss_dssp CC-CEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECSC
T ss_pred CC-CcEEEECccHHHHHHHHHHHHc----CCCCcEEEEECC
Confidence 48 9999999999999999999998 112477776654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.32 E-value=0.098 Score=38.65 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=32.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
...+| ++|.|||.|.+|--+|..|+.. |.+|.+..+.
T Consensus 18 ~~~~~-~~vvVvGgG~ig~E~A~~l~~~------g~~vt~i~~~ 54 (121)
T d1mo9a2 18 DYEPG-STVVVVGGSKTAVEYGCFFNAT------GRRTVMLVRT 54 (121)
T ss_dssp CSCCC-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred hhCCC-CEEEEECCCHHHHHHHHHHHhc------chhheEeecc
Confidence 34568 9999999999999999999998 9998888765
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=92.30 E-value=0.071 Score=43.09 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=30.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+||.|||.|.-|-+.|..|++. |++|.+.++.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999999874
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.28 E-value=0.076 Score=40.70 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=49.4
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccCChhH
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAAQ 191 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViLavP~~~~ 191 (281)
++.|+|+|++|.++++.++.. .+++++.+.+.+.... ...=.|+..- ...+++++ -++.++.++++|....
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~-G~~I~Gi~V~--~~~~l~~~~~~~i~iai~~i~~~~~ 76 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKV-GRPVRGGVIE--HVDLLPQRVPGRIEIALLTVPREAA 76 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTT-TCEETTEEEE--EGGGHHHHSTTTCCEEEECSCHHHH
T ss_pred eEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhc-CCEECCEEEe--cHHHHHHHHhhcccEEEEeCCHHHH
Confidence 789999999999999876543 2788776665543211 1111244321 12234443 3457888889998777
Q ss_pred HHHHHHHHh
Q 023490 192 ADNYEKIFS 200 (281)
Q Consensus 192 ~~vl~ei~~ 200 (281)
.++++.+.+
T Consensus 77 ~~I~d~l~~ 85 (126)
T d2dt5a2 77 QKAADLLVA 85 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 677776544
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=92.24 E-value=0.14 Score=43.89 Aligned_cols=87 Identities=13% Similarity=0.172 Sum_probs=58.9
Q ss_pred ccccccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 023490 101 FKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (281)
Q Consensus 101 f~~~~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~AD 180 (281)
|.+.....+| ++|++||+ + ...+.+++. +.++.+.++.+. .|... ....++++.+||
T Consensus 113 ~~~~~~~~~g-~kV~vIG~--~--P~v~~l~~~------~~~~~VlE~~p~--------~gd~p----~~~~~~lLp~aD 169 (251)
T d2h1qa1 113 FIMSQNEVKG-KKVGVVGH--F--PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILPECD 169 (251)
T ss_dssp HHHTTTTTTT-SEEEEESC--C--TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGGCS
T ss_pred hhhhccccCC-CEEEEEec--c--hhHHHHHhc------CCcEEEEeCCCC--------CCCCC----chHHHHhhhcCC
Confidence 4444466789 99999986 4 355567777 889999998742 23322 235778999999
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEe
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~a 211 (281)
+|++.-.- -.-+-++.++.+-|+...++++
T Consensus 170 ~viiTGsT-lvN~Tl~~LL~~~~~a~~vvl~ 199 (251)
T d2h1qa1 170 YVYITCAS-VVDKTLPRLLELSRNARRITLV 199 (251)
T ss_dssp EEEEETHH-HHHTCHHHHHHHTTTSSEEEEE
T ss_pred EEEEEech-hhcCCHHHHHHhCCcCCEEEEE
Confidence 99986331 1123566788888888766543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.091 Score=44.06 Aligned_cols=73 Identities=19% Similarity=0.135 Sum_probs=47.0
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCH---H---hhcCc
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDI---Y---ETISG 178 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G-~~~~~~t~~~~---~---E~l~~ 178 (281)
.|+| |++-|.|. +-||.++|+.|.+. |++|++.+|..++..+...+.+ +..-.....+. + +-+..
T Consensus 4 ~L~G-K~~lITGas~GIG~aia~~la~~------G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 4 FLAG-RRVLVTGAGKGIGRGTVQALHAT------GARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 4899 99999995 47999999999999 9999988886543333333332 11000012222 2 23557
Q ss_pred CCEEEEcc
Q 023490 179 SDLVLLLI 186 (281)
Q Consensus 179 ADVViLav 186 (281)
-|+++...
T Consensus 77 iDilVnnA 84 (244)
T d1pr9a_ 77 VDLLVNNA 84 (244)
T ss_dssp CCEEEECC
T ss_pred ceEEEecc
Confidence 79988643
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.24 Score=41.33 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=32.4
Q ss_pred cccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 106 ~~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
.-|+| |++-|.| .+.||.++|+.|.+. |++|++.+|.
T Consensus 2 ~~l~g-K~alITGas~GIG~aia~~la~~------G~~Vi~~~r~ 39 (245)
T d2ag5a1 2 GRLDG-KVIILTAAAQGIGQAAALAFARE------GAKVIATDIN 39 (245)
T ss_dssp CTTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCC
Confidence 34899 9988888 669999999999999 9999988876
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=91.83 E-value=0.27 Score=39.64 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=54.1
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEe-cC-CcccHHHHHHCCceecCC-CcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RK-GSRSFAEARAAGFTEENG-TLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~-r~-~~~s~~~A~~~G~~~~~~-t~~~~~E~l~~ADVViLavP 187 (281)
.+||||| .|-.|+.+.+.|... ..+++.... ++ ..+........-...++. .....++..+++|+|++++|
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-----P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-----PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred cEEEEECcccHHHHHHHHHHHhC-----CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 5799999 899999999999864 123543332 22 112222211110000000 01224456789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
.....++... ..+.+.++.+.+++.
T Consensus 81 ~~~s~~~~~~---l~~~~~~v~~~~~~~ 105 (183)
T d2cvoa1 81 HGTTQEIIKG---LPQELKIVDLSADFR 105 (183)
T ss_dssp SSHHHHHHHT---SCSSCEEEECSSTTT
T ss_pred cchHHHHHHH---HHhcCcccccchhhh
Confidence 9776555543 233455566666655
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.17 Score=39.99 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=48.0
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCCcc----cH----HHHHHCCceecCCCcCCHHhhcCc
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SF----AEARAAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~----s~----~~A~~~G~~~~~~t~~~~~E~l~~ 178 (281)
|+| +||++||-| ++..+++..+..+ |+++.+....... .. +.+.+.|...+ ...++++++++
T Consensus 2 l~g-l~I~~vGD~~nV~~Sli~~~~~~------g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~--~~~d~~~~~~~ 72 (170)
T d1otha2 2 LKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL--LTNDPLEAAHG 72 (170)
T ss_dssp CTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEE--EESCHHHHHTT
T ss_pred CCC-CEEEEEcCchhHHHHHHHHHHHc------CCEEEEEeccccCCchHHHHHHHHHHhccCCEEE--EEcCHHHHHhh
Confidence 789 999999976 4666777766666 9998877655321 11 12233332211 15689999999
Q ss_pred CCEEEEccCC
Q 023490 179 SDLVLLLISD 188 (281)
Q Consensus 179 ADVViLavP~ 188 (281)
+|+|..-+--
T Consensus 73 advi~~~~~~ 82 (170)
T d1otha2 73 GNVLITDTWI 82 (170)
T ss_dssp CSEEEECCSS
T ss_pred hhheeeecee
Confidence 9999986643
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.79 E-value=0.11 Score=38.43 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=30.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+++.|||.|.+|-.+|..+.+. |.+|.+..+.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCCccceeeeeeeccc------ccEEEEEEecc
Confidence 7999999999999999999999 99999887764
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.68 E-value=0.078 Score=45.06 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=54.5
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEE
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLL 184 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~-l~~ADVViL 184 (281)
.|+| |++-|.|. +-||.++|+.|.+. |++|++.+|..++ .+++.+ .+.+. ....++..+
T Consensus 2 rL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~~~-l~~~~~-----------~l~~~~~~~~~~~~~ 62 (272)
T d1xkqa_ 2 RFSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSSER-LEETRQ-----------IILKSGVSEKQVNSV 62 (272)
T ss_dssp TTTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHH-----------HHHTTTCCGGGEEEE
T ss_pred CCCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHhcCCCCCceEEE
Confidence 3899 99999995 47999999999999 9999998876432 222111 00000 112234444
Q ss_pred ccCC--h-hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 185 LISD--A-AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 185 avP~--~-~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
.+-. . ....+++++.....+=.+|+..+|..
T Consensus 63 ~~Dvs~~~~v~~~~~~~~~~~g~iDilvnnAG~~ 96 (272)
T d1xkqa_ 63 VADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAA 96 (272)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EccCCCHHHHHHHHHHHHHHhCCceEEEeCCccc
Confidence 4432 2 23346776666654444677666653
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=91.61 E-value=0.16 Score=43.75 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.6
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEE
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig 146 (281)
..|+| +|+.|=|+|+.|...|+.|.+. |.+|+..
T Consensus 32 ~~l~g-~~v~IQGfGnVG~~~a~~L~e~------Gakvvav 65 (255)
T d1bgva1 32 DTLVG-KTVALAGFGNVAWGAAKKLAEL------GAKAVTL 65 (255)
T ss_dssp CCSTT-CEEEECCSSHHHHHHHHHHHHH------TCEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE
Confidence 46899 9999999999999999999999 9987643
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=91.60 E-value=0.19 Score=42.22 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=53.3
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.|+| |++-|-| .+-||.++|+.|.+. |++|++.+|..+...+.+++ +-...++..+.
T Consensus 3 rL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~---------------~~~~~~~~~~~ 60 (251)
T d1zk4a1 3 RLDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHSDVGEKAAKS---------------VGTPDQIQFFQ 60 (251)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH---------------HCCTTTEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH---------------hCCCCcEEEEE
Confidence 4899 9999999 456999999999999 99999888764321111111 11122344444
Q ss_pred cCC--hh-HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISD--AA-QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~--~~-~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+-. .+ ..++++++.....+=.+|+..+|+.
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAg~~ 93 (251)
T d1zk4a1 61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIA 93 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCceEEEeccccc
Confidence 332 22 2346666665554434677666654
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=91.53 E-value=0.11 Score=43.70 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=33.2
Q ss_pred cccCCCcEEEEEccC---chHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G---~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
.+|+| |++-|-|.+ -||.++|+.|.+. |.+|++.++.
T Consensus 4 ~~L~g-K~alVTGass~~GIG~aiA~~la~~------Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 4 IDLRG-KRAFIAGIADDNGYGWAVAKSLAAA------GAEILVGTWV 43 (297)
T ss_dssp CCCTT-CEEEEECCSSSSSHHHHHHHHHHHT------TCEEEEEEEH
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 57999 999999986 4999999999999 9999888765
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.38 E-value=0.1 Score=45.19 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=30.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|+|.|||.|.-|-+.|..|.+. |++|++.+..+
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~~ 35 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQRD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECCC
Confidence 8999999999999999999998 99999998764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.38 E-value=0.25 Score=41.71 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=32.4
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|..
T Consensus 5 ~Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~~ 42 (259)
T d1xq1a_ 5 SLKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARNE 42 (259)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 4789 999999955 6999999999999 99998888763
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.26 E-value=0.35 Score=40.43 Aligned_cols=87 Identities=18% Similarity=0.026 Sum_probs=53.2
Q ss_pred cCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 023490 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (281)
Q Consensus 108 l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLav 186 (281)
|+| |++-|.|. +-||.++|+.|.+. |.+|++.+|..++ .+...+ ++.+. ..++..+.+
T Consensus 8 len-KvalITGas~GIG~a~a~~la~~------Ga~V~~~~r~~~~-l~~~~~-----------~l~~~--g~~~~~~~~ 66 (251)
T d2c07a1 8 GEN-KVALVTGAGRGIGREIAKMLAKS------VSHVICISRTQKS-CDSVVD-----------EIKSF--GYESSGYAG 66 (251)
T ss_dssp CSS-CEEEEESTTSHHHHHHHHHHTTT------SSEEEEEESSHHH-HHHHHH-----------HHHTT--TCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH-HHHHHH-----------HHHhc--CCcEEEEEc
Confidence 678 99999995 57999999999998 9999888875322 221111 11111 123444433
Q ss_pred C--Chh-HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 187 S--DAA-QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 187 P--~~~-~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
- +.+ ..++++++.....+=.+|+..+|+.
T Consensus 67 Dvt~~~~v~~~~~~~~~~~g~iDilvnnag~~ 98 (251)
T d2c07a1 67 DVSKKEEISEVINKILTEHKNVDILVNNAGIT 98 (251)
T ss_dssp CTTCHHHHHHHHHHHHHHCSCCCEEEECCCCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCceeeeeccccc
Confidence 2 222 3347777777665544677666654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.24 E-value=0.35 Score=38.88 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=48.1
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccH--------HHHHHCCceecCCCcCC---HHhhcCcC
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--------AEARAAGFTEENGTLGD---IYETISGS 179 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~--------~~A~~~G~~~~~~t~~~---~~E~l~~A 179 (281)
|||.|+| .|.+|+.+++.|.+. |++|++..|...... ......++....+...+ ..+.++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence 7899999 599999999999999 999988887643211 11112233221111222 44678889
Q ss_pred CEEEEccCChh
Q 023490 180 DLVLLLISDAA 190 (281)
Q Consensus 180 DVViLavP~~~ 190 (281)
|.|+.+.....
T Consensus 78 ~~vi~~~~~~~ 88 (307)
T d1qyca_ 78 DVVISTVGSLQ 88 (307)
T ss_dssp SEEEECCCGGG
T ss_pred eeeeecccccc
Confidence 98888776543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.15 E-value=0.24 Score=41.73 Aligned_cols=88 Identities=14% Similarity=0.019 Sum_probs=54.9
Q ss_pred ccCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 107 ~l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.|+| |++-|-|. +-||.++|+.|.+. |++|++.+|..++ .+...+ ++.+. ..+++.+.
T Consensus 8 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-~~~~~~-----------~l~~~--g~~~~~~~ 66 (255)
T d1fmca_ 8 RLDG-KCAIITGAGAGIGKEIAITFATA------GASVVVSDINADA-ANHVVD-----------EIQQL--GGQAFACR 66 (255)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHTT------TCEEEEEESCHHH-HHHHHH-----------HHHHT--TCCEEEEE
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHHc--CCcEEEEE
Confidence 4799 99999995 47999999999999 9999988875322 221111 11111 23455555
Q ss_pred cCCh---hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDA---AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~---~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+-.. ...++++++...+.+=.+|+..+|+.
T Consensus 67 ~Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 67 CDITSEQELSALADFAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEeeeCCcCC
Confidence 4332 22346666666655444677777754
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=91.10 E-value=0.066 Score=44.56 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=46.1
Q ss_pred cCCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC---HHhhcCcCCEE
Q 023490 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLV 182 (281)
Q Consensus 108 l~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~---~~E~l~~ADVV 182 (281)
|+| |++-|.|. +-||.++|+.|.+. |++|++.+|.. +..++.+.... -+...+ ..+-+.+-|++
T Consensus 2 Lkg-K~~lVTGas~GIG~aia~~l~~~------Ga~V~~~~r~~----~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~l 70 (234)
T d1o5ia_ 2 IRD-KGVLVLAASRGIGRAVADVLSQE------GAEVTICARNE----ELLKRSGHRYVVCDLRKDLDLLFEKVKEVDIL 70 (234)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCH----HHHHHTCSEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH----HHHHhcCCcEEEcchHHHHHHHHHHhCCCcEE
Confidence 789 99999996 46999999999999 99998888753 33344443210 001112 33556789999
Q ss_pred EEc
Q 023490 183 LLL 185 (281)
Q Consensus 183 iLa 185 (281)
+..
T Consensus 71 Vnn 73 (234)
T d1o5ia_ 71 VLN 73 (234)
T ss_dssp EEC
T ss_pred Eec
Confidence 875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.04 E-value=0.32 Score=37.81 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=57.6
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l------~~AD 180 (281)
+| .+|.|+| .|.+|....+.++.. |.+|++..+.. +..+.+++.|.... +..-.++.+-+ ...|
T Consensus 28 ~g-~~Vlv~ga~g~vG~~~iqlak~~------Ga~Vi~~~~s~-~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 28 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGTA-QKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEccccccchHHHHHHHHh------CCeEeecccch-HHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence 58 9999996 555999999999998 99988777764 34567777774321 11122343333 2357
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+|+-++... .+......++++-.++.
T Consensus 100 ~v~d~~g~~----~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 100 VVYDSVGRD----TWERSLDCLQRRGLMVS 125 (179)
T ss_dssp EEEECSCGG----GHHHHHHTEEEEEEEEE
T ss_pred EEEeCccHH----HHHHHHHHHhcCCeeee
Confidence 777777543 34455566777655443
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.00 E-value=0.16 Score=38.31 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=31.3
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
++ +++.|||.|.+|-.+|..|++. |.+|.+..+.+
T Consensus 29 ~~-~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~~ 63 (121)
T d1d7ya2 29 PQ-SRLLIVGGGVIGLELAATARTA------GVHVSLVETQP 63 (121)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred cC-CeEEEECcchhHHHHHHHhhcc------cceEEEEeecc
Confidence 35 9999999999999999999999 99998887653
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.13 Score=38.20 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=30.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
++|.|||.|.+|-.+|..|++. |.+|.+.++.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhcc------ccEEEEEeecc
Confidence 7899999999999999999999 99998887753
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=90.98 E-value=0.14 Score=44.05 Aligned_cols=72 Identities=24% Similarity=0.234 Sum_probs=46.2
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHH-----HHCC-c---eecC-CCcCCHHhhcC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----RAAG-F---TEEN-GTLGDIYETIS 177 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A-----~~~G-~---~~~~-~t~~~~~E~l~ 177 (281)
+| |+|.|.| .|-+|..+++.|.+. |++|+...|...+..... .... . ...| ....++++++.
T Consensus 10 ~g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 82 (342)
T d1y1pa1 10 EG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT
T ss_pred Cc-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc
Confidence 48 9999999 889999999999999 999987776532211110 0001 1 1000 01234567899
Q ss_pred cCCEEEEccC
Q 023490 178 GSDLVLLLIS 187 (281)
Q Consensus 178 ~ADVViLavP 187 (281)
++|.|+.+.-
T Consensus 83 ~~~~v~~~a~ 92 (342)
T d1y1pa1 83 GAAGVAHIAS 92 (342)
T ss_dssp TCSEEEECCC
T ss_pred cchhhhhhcc
Confidence 9999886443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.94 E-value=0.13 Score=40.54 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=51.8
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~---~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP 187 (281)
-+|||||. |-.|+.+.+.|... .+ ++.+...+ ++........... .......++...+.|++++++|
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~~s~--~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~ 72 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASA--RSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAG 72 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEEECG--GGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSC
T ss_pred CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEeccc--ccccccccccCCc-ccccccchhhhhhhhhhhhccC
Confidence 58999995 99999999888654 33 33222211 1100000000000 0001234566789999999999
Q ss_pred ChhHHHHHHHHHhcCCCCcEEEEeCC
Q 023490 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (281)
Q Consensus 188 ~~~~~~vl~ei~~~mKpgaILi~aaG 213 (281)
.....+...+.. +.+..|++.++
T Consensus 73 ~~~s~~~~~~~~---~~~~~VIDlSs 95 (154)
T d2gz1a1 73 SSTSAKYAPYAV---KAGVVVVDNTS 95 (154)
T ss_dssp HHHHHHHHHHHH---HTTCEEEECSS
T ss_pred ccchhhHHhhhc---cccceehhcCh
Confidence 876665555443 36888887655
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.91 E-value=0.13 Score=38.67 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=30.1
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+++.|||.|.+|--+|..|.+. |.+|.+..+.+
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l------G~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL------GSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred CeEEEECCCchHHHHHHHHHhh------CcceeEEEecc
Confidence 7999999999999999999999 99998887653
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.87 E-value=0.32 Score=40.82 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=32.2
Q ss_pred ccCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.|+| |++-|.| .+-||.++|+.|.+. |++|++.+|+.
T Consensus 2 rl~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~r~~ 39 (264)
T d1spxa_ 2 RFAE-KVAIITGSSNGIGRATAVLFARE------GAKVTITGRHA 39 (264)
T ss_dssp TTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 4889 9888888 568999999999999 99999888763
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.83 E-value=0.17 Score=38.04 Aligned_cols=35 Identities=26% Similarity=0.120 Sum_probs=31.4
Q ss_pred cCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 108 l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
-++ ++|.|||.|.+|-.+|..|++. |.+|.+.++.
T Consensus 28 ~~~-k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~ 62 (123)
T d1nhpa2 28 PEV-NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL 62 (123)
T ss_dssp TTC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred cCC-CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence 356 9999999999999999999999 9999888765
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.81 E-value=0.089 Score=43.56 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=30.7
Q ss_pred Cc-EEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 111 IN-QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 111 ~k-tIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|| +|.|||.|.-|-++|..|++. |++|.+.++..
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~~ 35 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQT 35 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHH------TCCEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCCEEEEeCCC
Confidence 45 599999999999999999999 99999998764
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.13 Score=40.61 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.7
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
++|.|||.|.-|-+-|..|.+. |++|++.+..
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEAR 37 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 6799999999999999999999 9999999765
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.73 E-value=0.41 Score=39.94 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=49.4
Q ss_pred cEEEEE-cc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 112 NQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 112 ktIGII-G~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
|||.+| |. +-||.++|+.|.+. |++|++.+|..++ .+...+ ++.+ ...+++.+.+-..
T Consensus 1 KKValITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~-----------~i~~--~g~~~~~~~~Dv~ 60 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD------GFAVAIADYNDAT-AKAVAS-----------EINQ--AGGHAVAVKVDVS 60 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHH-----------HHHH--TTCCEEEEECCTT
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHh--cCCcEEEEEeeCC
Confidence 566555 64 46999999999999 9999988876322 111111 1111 1234454444332
Q ss_pred h---HHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 190 A---QADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 190 ~---~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
. ..++++++.....+=.+|+..+|+.
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~ 89 (255)
T d1gega_ 61 DRDQVFAAVEQARKTLGGFDVIVNNAGVA 89 (255)
T ss_dssp SHHHHHHHHHHHHHHTTCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeccccc
Confidence 2 2346677766665444677777754
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=90.73 E-value=0.17 Score=37.89 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=30.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
++|.|||.|.+|--+|..+++. |.+|.+..+.+
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~------G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL------GAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHc------CCceEEEEeec
Confidence 7899999999999999999999 99998887653
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.61 E-value=0.14 Score=38.40 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
++|.|||.|.+|-.+|..|... |.+|.+..+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL------GIDSYIFARG 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhc------cccceeeehh
Confidence 8999999999999999999998 9999988765
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.06 E-value=0.11 Score=42.37 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=28.7
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|.|||.|.+|-+.|..|.+. |.+|++.++..
T Consensus 7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCCC
Confidence 99999999999999999999 99999998753
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.90 E-value=0.18 Score=37.88 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=30.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+++.|||.|.+|-.+|..++.. |.+|.+..+.+
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~------G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL------GSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC------CcEEEEEeecc
Confidence 7999999999999999999999 99999888753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.87 E-value=0.13 Score=38.96 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=28.2
Q ss_pred EEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecC
Q 023490 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (281)
Q Consensus 113 tIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~ 149 (281)
+|.|||.|.-|-+.|..|.+. |+ +|++.++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEA------GITDLLILEAT 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence 689999999999999999999 97 69998875
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.69 E-value=0.62 Score=38.62 Aligned_cols=37 Identities=30% Similarity=0.240 Sum_probs=32.8
Q ss_pred ccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 107 ~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.|+| |++-|.|.+ -||.++|+.|.+. |++|++.+|..
T Consensus 4 sl~g-K~~lITGas~GIG~aia~~la~~------Ga~V~~~~r~~ 41 (237)
T d1uzma1 4 PFVS-RSVLVTGGNRGIGLAIAQRLAAD------GHKVAVTHRGS 41 (237)
T ss_dssp CCCC-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCc
Confidence 4899 999999966 6999999999999 99999888764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.66 E-value=0.15 Score=38.49 Aligned_cols=32 Identities=22% Similarity=0.098 Sum_probs=29.0
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+++.|||.|.+|-.+|..+++. |.+|.+..+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l------G~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI------GLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhc------CCeEEEEEec
Confidence 6899999999999999999999 9998887654
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=89.60 E-value=0.33 Score=38.04 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=47.1
Q ss_pred cCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCc-EEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCcC
Q 023490 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (281)
Q Consensus 108 l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~----~~s~~~A~~~G~~~~~~t~~~~~E~l~~A 179 (281)
|.| .+|++||= ++...+++..+..+ |. .+.++.... ....+.+++.|.... ...+++++++++
T Consensus 2 l~g-l~i~~vGD~~nsrv~~Sli~~l~~~------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~a~~~a 72 (160)
T d1ekxa2 2 LDN-LHVAMVGDLKYGRTVHSLTQALAKF------DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAEV 72 (160)
T ss_dssp SSS-CEEEEESCTTTCHHHHHHHHHHTTS------SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCSTTTGGGC
T ss_pred CCC-CEEEEEcCCCccHHHHHHHHHHHHc------CCCeEEeeccchhhhhHHHHHHHhhhccccc--cccCHHHHhCcC
Confidence 678 99999996 55899999998887 75 444543331 122234455554321 246889999999
Q ss_pred CEEEEcc
Q 023490 180 DLVLLLI 186 (281)
Q Consensus 180 DVViLav 186 (281)
|+|....
T Consensus 73 Dvvy~~~ 79 (160)
T d1ekxa2 73 DILYMTR 79 (160)
T ss_dssp SEEEECC
T ss_pred ceEEeec
Confidence 9998643
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.47 E-value=0.2 Score=44.20 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=31.7
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEec
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r 148 (281)
..|+| +++.|=|+|+.|...|+.|.+. |.+|+...+
T Consensus 32 ~~L~g-ktvaIqGfGnVG~~~A~~L~e~------Gakvv~vsD 67 (293)
T d1hwxa1 32 PGFGD-KTFAVQGFGNVGLHSMRYLHRF------GAKCVAVGE 67 (293)
T ss_dssp SSSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 47999 9999999999999999999998 998765443
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=89.45 E-value=0.43 Score=40.27 Aligned_cols=37 Identities=22% Similarity=0.159 Sum_probs=33.1
Q ss_pred cCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 108 l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
++| |+|-|.| .|-+|..+++.|.+. |++|+..+|...
T Consensus 6 ~~~-KkILVTG~tGfIGs~lv~~Ll~~------g~~V~~~~r~~~ 43 (356)
T d1rkxa_ 6 WQG-KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTAP 43 (356)
T ss_dssp HTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCS
T ss_pred hCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCC
Confidence 578 9999999 899999999999999 999988887643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.22 E-value=0.8 Score=35.86 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=63.9
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhc-----CcCC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETI-----SGSD 180 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~-~-~t~~~~~E~l-----~~AD 180 (281)
+| .+|-|.|. |.+|.+.++.++.. |.+|+...++. +..+.+++.|.... + ......++++ ...|
T Consensus 29 ~G-~~VlV~ga~ggvG~~aiqlak~~------Ga~vi~~~~~~-~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd 100 (182)
T d1v3va2 29 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGSD-EKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 100 (182)
T ss_dssp SS-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEeCCCchhHHHHHHHHcc------CCEEEEeCCCH-HHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCc
Confidence 68 99999997 67999999999988 99988776653 34667788885321 1 1111222222 4589
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
+|+=++.. +.+++.++.++++-.++..+
T Consensus 101 ~v~D~vG~----~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 101 CYFDNVGG----EFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEEESSCH----HHHHHHGGGEEEEEEEEECC
T ss_pred eeEEecCc----hhhhhhhhhccCCCeEEeec
Confidence 99998863 35678888999988776554
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.21 E-value=0.54 Score=39.67 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=31.8
Q ss_pred cCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 108 l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|+| |++-|-|.+ -||.++|+.|.+. |++|++.+|..
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~ 38 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNE 38 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 999999954 6999999999999 99999888763
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.15 E-value=0.26 Score=39.26 Aligned_cols=91 Identities=21% Similarity=0.196 Sum_probs=61.6
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEE-ecCCcccHHHHHHCCceec-CCCcCCHHhhcCc-----CC
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEE-NGTLGDIYETISG-----SD 180 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig-~r~~~~s~~~A~~~G~~~~-~~t~~~~~E~l~~-----AD 180 (281)
++ .+|-|.| .|.+|...++.++.. |.+++++ .+..++..+.+.+.|...- +....+..+.+++ .|
T Consensus 30 ~~-etVLI~gaaGgVG~~aiQlak~~------Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 30 SN-QTMVVSGAAGACGSLAGQIGHLL------GCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp SC-CEEEESSTTSTTGGGHHHHHHHT------TCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCchhhHHHHHHHHHc------CCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCce
Confidence 45 7788888 699999999999988 9865555 4443444445556774321 2223355655555 99
Q ss_pred EEEEccCChhHHHHHHHHHhcCCCCcEEEE
Q 023490 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (281)
Q Consensus 181 VViLavP~~~~~~vl~ei~~~mKpgaILi~ 210 (281)
+|+=++-. +.++..++.++++-.++.
T Consensus 103 vv~D~vGg----~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 103 VYFDNVGG----DISNTVISQMNENSHIIL 128 (187)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEE
T ss_pred EEEecCCc----hhHHHHhhhccccccEEE
Confidence 99988862 367778888988776654
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=0.11 Score=48.94 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=31.2
Q ss_pred ccccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEec
Q 023490 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (281)
Q Consensus 105 ~~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r 148 (281)
...|.. .+|.|||+|.+|..++++|... |. ++.+.|.
T Consensus 20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itivD~ 57 (529)
T d1yova1 20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTIIDG 57 (529)
T ss_dssp HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEECC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEEcC
Confidence 466888 9999999999999999999988 76 5666654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=89.06 E-value=0.25 Score=37.64 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=31.4
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+ ++|.|||.|.+|-.+|..|++. |.+|.+.++.+
T Consensus 34 ~~-k~v~VIGgG~iG~E~A~~l~~~------g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 AD-NRLVVIGGGYIGLEVAATAIKA------NMHVTLLDTAA 68 (133)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred cC-CEEEEECCchHHHHHHHHHHhh------Ccceeeeeecc
Confidence 46 9999999999999999999999 99998887653
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.91 E-value=0.83 Score=39.30 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=32.4
Q ss_pred cccCCCcEEEEEccC-chHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G-~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
..|+| |++-|-|.+ -||.++|+.|.+. |++|++.++.
T Consensus 3 m~l~g-KvalITGas~GIG~aiA~~la~~------Ga~Vvi~d~~ 40 (302)
T d1gz6a_ 3 LRFDG-RVVLVTGAGGGLGRAYALAFAER------GALVVVNDLG 40 (302)
T ss_dssp CCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECCC
T ss_pred cCcCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCC
Confidence 46899 999999965 6999999999999 9999888764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.65 E-value=0.26 Score=36.30 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=29.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+++.|||.|.+|-.+|..+++. |.+|.+.++.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~------g~~Vtlve~~ 53 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL------GAQVSVVEAR 53 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc------ccceEEEeee
Confidence 8999999999999999999999 9999887765
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.52 E-value=0.19 Score=37.75 Aligned_cols=33 Identities=21% Similarity=0.073 Sum_probs=30.4
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+++.|||.|.+|--+|..+... |.+|.+..+.+
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~------G~~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRI------GSEVTVVEFAS 58 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH------TCEEEEECSSS
T ss_pred CeEEEEccchHHHHHHHHHHhc------CCeEEEEEEcc
Confidence 7999999999999999999999 99999887753
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.51 E-value=0.26 Score=36.73 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=29.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+++.|||.|.+|-.+|..|+.. |.+|.+.++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 64 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA------GYHVKLIHRG 64 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc------cceEEEEecc
Confidence 8999999999999999999999 9999887765
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.37 E-value=0.3 Score=41.48 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=29.9
Q ss_pred cccccCCCcEEEEEccCchHHHHHHHHH-hhhhhccCCcEEEEEe
Q 023490 104 LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGL 147 (281)
Q Consensus 104 ~~~~l~G~ktIGIIG~G~mG~AiA~~Lr-a~~~~~~~G~~Viig~ 147 (281)
+...|+| ++|.|-|+|++|..+|+.|. +. |.+|+...
T Consensus 26 g~~~l~g-~~v~IqGfGnVG~~~a~~L~~~~------G~kvv~vs 63 (239)
T d1gtma1 26 GWDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVS 63 (239)
T ss_dssp TCSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEE
T ss_pred CCCCcCC-CEEEEECCCHHHHHHHHHHHHhc------Ccceeecc
Confidence 4356999 99999999999999999885 46 88765443
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=88.18 E-value=0.4 Score=38.92 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=32.3
Q ss_pred ccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 107 ~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
.-.+ ++|.|||.|.-|-+.|..|++. |++|.+.++.
T Consensus 46 ~~~~-k~VvIIGaGpAGl~aA~~l~~~------G~~v~l~E~~ 81 (233)
T d1djqa3 46 TKNK-DSVLIVGAGPSGSEAARVLMES------GYTVHLTDTA 81 (233)
T ss_dssp CSSC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred ccCC-ceEEEEcccHHHHHHHHHHHHh------ccceeeEeec
Confidence 3466 9999999999999999999999 9999999764
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.85 E-value=0.042 Score=43.80 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=21.0
Q ss_pred cEEEEEccCchHHHHHHHHHhh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDS 133 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~ 133 (281)
|+|.|||.|.+|-+.|..|.+.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 6899999999999999999988
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.79 E-value=0.32 Score=38.82 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=29.6
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~ 150 (281)
.+|.|||.|.-|-++|..|++. |+ +|.|.++..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCCC
Confidence 5899999999999999999999 96 888888764
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.79 E-value=1.1 Score=35.11 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=69.7
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|-|-|. |..|.-.++.++++ |-+|+.+..++..-. .-.|+.. +.+.+|+.+ ++|.=++-+|+
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~Y------GT~iVaGVtPgKgG~---~~~giPV----f~tV~eA~~~~~~daSvIfVPp 82 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGGK---THLGLPV----FNTVKEAKEQTGATASVIYVPP 82 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHh------cCCeEEeeccCCCCc---cccCccc----hhhHHHHHHhcCCcEEEEecCH
Confidence 78999996 99999999999999 999888876642110 1245664 678888765 79999999999
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeCCcchhh
Q 023490 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (281)
Q Consensus 189 ~~~~~-vl~ei~~~mKpgaILi~aaG~~l~~ 218 (281)
....+ .++.+-+.++ .++++.-|+...+
T Consensus 83 ~~a~dAi~EAi~agI~--liV~ITEgIPv~D 111 (130)
T d1euca1 83 PFAAAAINEAIDAEVP--LVVCITEGIPQQD 111 (130)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCCHHH
T ss_pred HHHHHHHHHHHhCCCC--EEEEecCCCCHHH
Confidence 87766 6776666664 3677888988644
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.38 E-value=0.37 Score=39.16 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=47.7
Q ss_pred cCCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCc--EEEEEecCCcccHH-HHHHCCceecC-CCcCCHHhhcCcCCEE
Q 023490 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EARAAGFTEEN-GTLGDIYETISGSDLV 182 (281)
Q Consensus 108 l~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~--~Viig~r~~~~s~~-~A~~~G~~~~~-~t~~~~~E~l~~ADVV 182 (281)
..+ |+|.|.| .|.+|+.+++.|.+. |. +|.+..|+...... ......+...| ....++.++++.+|+|
T Consensus 12 m~~-k~IlItGaTG~iG~~l~~~Ll~~------g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~v 84 (232)
T d2bkaa1 12 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVG 84 (232)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHhC------CCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccc
Confidence 466 8999999 899999999999988 74 78887776432111 11111111100 0123566788999999
Q ss_pred EEccC
Q 023490 183 LLLIS 187 (281)
Q Consensus 183 iLavP 187 (281)
+.++-
T Consensus 85 i~~~~ 89 (232)
T d2bkaa1 85 FCCLG 89 (232)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 98764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.28 E-value=0.33 Score=38.89 Aligned_cols=35 Identities=31% Similarity=0.279 Sum_probs=29.3
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
.+|+|||.|.-|-+.|..|++. +.|++|.++++.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~~ 36 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQL 36 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSSS
T ss_pred CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCCC
Confidence 5899999999999999999765 3377999887653
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=87.03 E-value=1.5 Score=33.75 Aligned_cols=92 Identities=17% Similarity=0.264 Sum_probs=68.3
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.++-|-|. |..|.-.++.++++ |-+|+.+..++..-. .-.|+.. +.+.+|+++ ++|.=++-+|+
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~y------GT~vVaGVtPgkgG~---~~~giPV----f~sV~eAv~~~~~~~SvIfVPp 73 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGT---THLGLPV----FNTVREAVAATGATASVIYVPA 73 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTE---EETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEEEEccCCCCc---ccCCCch----hhHHHHHHHHhCCCeEEEeccH
Confidence 68999996 99999999999999 999888876643111 1246665 667777654 58999999999
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeCCcchhh
Q 023490 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (281)
Q Consensus 189 ~~~~~-vl~ei~~~mKpgaILi~aaG~~l~~ 218 (281)
....+ .++.+-+.++ .++++.-|+...+
T Consensus 74 ~~a~dA~~EAi~agI~--~iV~ITEgIP~~D 102 (119)
T d2nu7a1 74 PFCKDSILEAIDAGIK--LIITITEGIPTLD 102 (119)
T ss_dssp GGHHHHHHHHHHTTCS--EEEECCCCCCHHH
T ss_pred HHHHHHHHHHHHCCCC--EEEEecCCCCHHH
Confidence 77765 6676666664 3677888887643
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.98 E-value=0.61 Score=34.50 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=46.1
Q ss_pred cEEEEEcc----------CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCE
Q 023490 112 NQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (281)
Q Consensus 112 ktIGIIG~----------G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADV 181 (281)
|+|||.|+ .+-.--+.+.|... |.+|.++++.-.... ...+... ..+++++++.+|+
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~------g~~v~iyDP~v~~~~---~~~~~~~----~~~l~~~~~~sDi 82 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSK------DIKIIIYEPMLNKLE---SEDQSVL----VNDLENFKKQANI 82 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTS------SCEEEEECTTCSCCC---TTCCSEE----CCCHHHHHHHCSE
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhcc------ccceeeecCCcChhH---hccCCEE----EeCHHHHHhhCCE
Confidence 78999886 35566788888887 999998876533211 1233433 4589999999998
Q ss_pred EEEccCChh
Q 023490 182 VLLLISDAA 190 (281)
Q Consensus 182 ViLavP~~~ 190 (281)
|++......
T Consensus 83 II~~~~~~~ 91 (108)
T d1dlja3 83 IVTNRYDNE 91 (108)
T ss_dssp EECSSCCGG
T ss_pred EEEcCCchH
Confidence 887766543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.94 E-value=0.82 Score=38.13 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=50.9
Q ss_pred CCCcEEEEE--ccCchHHHHHHHHHh-hhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 023490 109 NGINQIGVI--GWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (281)
Q Consensus 109 ~G~ktIGII--G~G~mG~AiA~~Lra-~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLa 185 (281)
.| |+|+|| |.+-||.++|+.|.+ . |.+|++..|..++..+.+++ +.+.-.++.++.+=
T Consensus 1 ~g-~rVAlVTGas~GIG~a~A~~la~~~------g~~Vi~~~r~~~~~~~~~~~------------l~~~~~~~~~~~~D 61 (275)
T d1wmaa1 1 SG-IHVALVTGGNKGIGLAIVRDLCRLF------SGDVVLTARDVTRGQAAVQQ------------LQAEGLSPRFHQLD 61 (275)
T ss_dssp CC-CCEEEESSCSSHHHHHHHHHHHHHS------SSEEEEEESSHHHHHHHHHH------------HHHTTCCCEEEECC
T ss_pred CC-CeEEEECCCCCHHHHHHHHHHHHhC------CCEEEEEECCHHHHHHHHHH------------HHhcCCcEEEEEEe
Confidence 47 999988 577899999999865 4 78898888874432221111 11111223333333
Q ss_pred cCChhH-HHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 186 ISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 186 vP~~~~-~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
+.+.+. .++++++.....+=.+|+..+|+.
T Consensus 62 vs~~~sv~~~~~~~~~~~g~iDiLVnNAGi~ 92 (275)
T d1wmaa1 62 IDDLQSIRALRDFLRKEYGGLDVLVNNAGIA 92 (275)
T ss_dssp TTCHHHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred cCCHHHHHHHHHHHHHhcCCcEEEEEcCCcC
Confidence 334333 346666665543323677778864
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.88 E-value=0.29 Score=36.99 Aligned_cols=31 Identities=16% Similarity=-0.037 Sum_probs=28.5
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+.|||.|.-|...|..|.+. |.+|++.++.+
T Consensus 8 viViGaG~~Gl~~A~~La~~------G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVD------GKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCCEEEEcCCC
Confidence 68999999999999999999 99999998763
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=86.73 E-value=1.6 Score=34.34 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=59.3
Q ss_pred CCCcEEEEE--ccCchHHHHHHHHHhhhhhccCCcEEEEEecCCccc---HHHHHHCCceec---C-CCcCCHHhhc---
Q 023490 109 NGINQIGVI--GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEE---N-GTLGDIYETI--- 176 (281)
Q Consensus 109 ~G~ktIGII--G~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s---~~~A~~~G~~~~---~-~t~~~~~E~l--- 176 (281)
+| .++.|+ |.|.+|.+..+.++.. |.+|+...+..... .+..++.|.... + ....+..+.+
T Consensus 28 ~g-~~vli~~ga~g~vG~~aiqlAk~~------Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 28 PG-KDWFIQNGGTSAVGKYASQIGKLL------NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp TT-TCEEEESCTTSHHHHHHHHHHHHH------TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHH
T ss_pred CC-CEEEEEeCCCchHHHHHHHHHhhc------CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHH
Confidence 57 889888 6789999999999999 99988776654332 234456674320 0 0001111111
Q ss_pred -----CcCCEEEEccCChhHHHHHHHHHhcCCCCcEEEEeC
Q 023490 177 -----SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (281)
Q Consensus 177 -----~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi~aa 212 (281)
...|+|+=++-.. .+.+.+..|+++-.++..+
T Consensus 101 ~~~~g~~vdvv~D~vg~~----~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 101 IKQSGGEAKLALNCVGGK----SSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHTCCEEEEEESSCHH----HHHHHHHTSCTTCEEEECC
T ss_pred HhhccCCceEEEECCCcc----hhhhhhhhhcCCcEEEEEC
Confidence 3489999877532 4456678899988776544
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.63 E-value=0.39 Score=36.33 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=30.2
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
+++.|||.|.+|--+|..++.. |.+|.+..+.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~------G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTL------GSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHH------TCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcC------CCEEEEEEeec
Confidence 7999999999999999999999 99998887653
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.63 E-value=0.0031 Score=48.93 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=20.6
Q ss_pred cEEEEEccCchHHHHHHHHHhh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDS 133 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~ 133 (281)
++++|+|+|+||+++|++++++
T Consensus 99 r~l~i~G~G~iG~~iA~r~~a~ 120 (121)
T d1qp8a2 99 RNLITYATGGRPRNIAKREDYI 120 (121)
T ss_dssp HHHHHHHTTSCCSCBCCGGGTC
T ss_pred CCEEEEcCCHHHHHHHHHHHhc
Confidence 7899999999999999999876
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=86.56 E-value=1.6 Score=36.12 Aligned_cols=85 Identities=15% Similarity=0.057 Sum_probs=49.9
Q ss_pred CCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 023490 110 GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (281)
Q Consensus 110 G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~ 188 (281)
| |..-|-|. +-||.++|+.|.+. |++|++.+|..++ .+...+ ++.+. ..++..+.+-.
T Consensus 2 g-KValITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~-l~~~~~-----------~l~~~--g~~~~~~~~Dv 60 (257)
T d2rhca1 2 S-EVALVTGATSGIGLEIARRLGKE------GLRVFVCARGEEG-LRTTLK-----------ELREA--GVEADGRTCDV 60 (257)
T ss_dssp C-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHH-----------HHHHT--TCCEEEEECCT
T ss_pred C-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHH-----------HHHhc--CCcEEEEEeec
Confidence 5 55566674 46999999999999 9999988876322 221111 11111 22344444332
Q ss_pred --h-hHHHHHHHHHhcCCCCcEEEEeCCcc
Q 023490 189 --A-AQADNYEKIFSCMKPNSILGLSHGFL 215 (281)
Q Consensus 189 --~-~~~~vl~ei~~~mKpgaILi~aaG~~ 215 (281)
. ...++++++.....+=.+|+..+|+.
T Consensus 61 s~~~~v~~~~~~~~~~~g~iDilVnnAG~~ 90 (257)
T d2rhca1 61 RSVPEIEALVAAVVERYGPVDVLVNNAGRP 90 (257)
T ss_dssp TCHHHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEeccccc
Confidence 2 23347777777665444677777754
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.51 E-value=0.45 Score=37.39 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=27.9
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
|||.|||.|..|-..|..|++. +.+.+|++.++.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~----~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 6899999999999999999987 224477777664
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.16 E-value=0.29 Score=41.62 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=30.6
Q ss_pred CcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 111 ~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
|..|.|||.|.-|-+.|..|.+. |.+|.+.++++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~------g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL------NKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG------TCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC------CCcEEEEECCC
Confidence 56799999999999999999988 99999998764
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=85.55 E-value=1.6 Score=35.67 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=26.0
Q ss_pred EEEE-c-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCc
Q 023490 114 IGVI-G-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (281)
Q Consensus 114 IGII-G-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~ 151 (281)
|+|| | .+-||.++|+.|.+. |++|++.+++..
T Consensus 4 VAlITGas~GIG~aiA~~la~~------Ga~V~i~~~~~~ 37 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAE------GYAVCLHYHRSA 37 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCH
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCCH
Confidence 5666 5 457999999999999 999988877654
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=85.26 E-value=0.58 Score=39.41 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=41.2
Q ss_pred cEEEEEc-cCchHHHHHHHHHhhhhhccCCc-EEEEEecCCcccHHHHHHCCceecCCCcC---CHH-hhcCcCCEEEEc
Q 023490 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLG---DIY-ETISGSDLVLLL 185 (281)
Q Consensus 112 ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~~s~~~A~~~G~~~~~~t~~---~~~-E~l~~ADVViLa 185 (281)
|||-|.| .|-||..+++.|.+. |. +|+..++.............+..-.+... +.. ...+++|+|+-+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~------g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~ 74 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE------DHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPL 74 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS------TTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence 5799999 799999999999888 84 66655443221111111112211111111 223 367889999875
Q ss_pred cCC
Q 023490 186 ISD 188 (281)
Q Consensus 186 vP~ 188 (281)
.-.
T Consensus 75 a~~ 77 (342)
T d2blla1 75 VAI 77 (342)
T ss_dssp BCC
T ss_pred ccc
Confidence 543
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.44 E-value=2.1 Score=33.54 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=19.6
Q ss_pred cEEEEEccCchHHHHHHHHHhh
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDS 133 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~ 133 (281)
-+|+|+|+|++|+++++.+...
T Consensus 5 i~I~l~G~G~VG~~l~~~l~~~ 26 (168)
T d1ebfa1 5 VNVAVIGAGVVGSAFLDQLLAM 26 (168)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC
T ss_pred EEEEEEeCCHHHHHHHHHHHHh
Confidence 4689999999999999998864
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.20 E-value=0.46 Score=38.58 Aligned_cols=30 Identities=37% Similarity=0.372 Sum_probs=28.0
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
|.|||.|.-|-+.|..|.+. |++|++.++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~------G~~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDS------GLNVVVLEAR 31 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHT------TCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 78999999999999999999 9999999865
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.87 E-value=0.67 Score=39.42 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHH-HHHHCCceecCCCcC---CHHhhcCcCCEEE
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLG---DIYETISGSDLVL 183 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~-~A~~~G~~~~~~t~~---~~~E~l~~ADVVi 183 (281)
++ |+|.|.| .|-||..+++.|.+. |++|++.++....... ......+.. .... ...+++++.|.|+
T Consensus 14 ~n-MKILVTGgsGfIGs~lv~~L~~~------g~~V~~~d~~~~~~~~~~~~~~~~~~--~D~~~~~~~~~~~~~~d~Vi 84 (363)
T d2c5aa1 14 EN-LKISITGAGGFIASHIARRLKHE------GHYVIASDWKKNEHMTEDMFCDEFHL--VDLRVMENCLKVTEGVDHVF 84 (363)
T ss_dssp SC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCCSSSCGGGTCSEEEE--CCTTSHHHHHHHHTTCSEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCCccchhhhcccCcEEE--eechhHHHHHHHhhcCCeEe
Confidence 78 8899999 999999999999999 9999887665322111 111111221 1122 2445678899888
Q ss_pred Ecc
Q 023490 184 LLI 186 (281)
Q Consensus 184 Lav 186 (281)
-+.
T Consensus 85 h~a 87 (363)
T d2c5aa1 85 NLA 87 (363)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.81 E-value=0.48 Score=36.04 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=26.7
Q ss_pred CCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEe
Q 023490 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (281)
Q Consensus 109 ~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~ 147 (281)
++ ++|.|||.|..|-.+|..|+.. |.++.+..
T Consensus 2 ~~-~~VvIIGgG~~G~e~A~~l~~~------g~~v~v~~ 33 (185)
T d1q1ra1 2 AN-DNVVIVGTGLAGVEVAFGLRAS------GWEGNIRL 33 (185)
T ss_dssp CS-CEEEEECCSHHHHHHHHHHHHT------TCCSEEEE
T ss_pred CC-CCEEEECCcHHHHHHHHHHHHc------CCceEEEE
Confidence 35 8999999999999999999998 87654443
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=83.66 E-value=0.48 Score=34.54 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=25.0
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhh
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~ 133 (281)
.+++| |+|.|||.|+=|.-+|.-|...
T Consensus 28 ~~f~g-K~VlVVG~g~Sa~dia~~l~~~ 54 (107)
T d2gv8a2 28 ELFVG-ESVLVVGGASSANDLVRHLTPV 54 (107)
T ss_dssp GGGTT-CCEEEECSSHHHHHHHHHHTTT
T ss_pred hhcCC-CeEEEECCCCCHHHHHHHHHHh
Confidence 78999 9999999999999999998765
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.47 E-value=2.5 Score=32.49 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=67.4
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~--~ADVViLavP~ 188 (281)
.+|-|-|. |.+|.-.++.++++ |-+|+.+..++..-. .-.|+.. +.+.+|+++ ++|.=++-+|+
T Consensus 8 trVivQGiTG~~G~~ht~~m~~y------GT~iVaGVtPgkgG~---~~~giPV----f~tV~eAv~~~~~d~SvIfVPp 74 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGGM---EVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEeeeecCCCCc---EEECCch----HhhHHHHHHhcCCeEEEEeeCH
Confidence 68999995 99999999999999 999888876643110 1135554 667777544 68999999999
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeCCcchhh
Q 023490 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (281)
Q Consensus 189 ~~~~~-vl~ei~~~mKpgaILi~aaG~~l~~ 218 (281)
....+ .++.+-+.++ .++++.-|+...+
T Consensus 75 ~~a~dAi~EAi~agI~--liv~ITEgVPv~D 103 (121)
T d1oi7a1 75 PAAADAALEAAHAGIP--LIVLITEGIPTLD 103 (121)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCSCCCHHH
T ss_pred HHHHHHHHHHHhCCCc--EEEEecCCCCHHH
Confidence 77766 6666666664 3677888888543
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=82.59 E-value=0.87 Score=35.72 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=30.4
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
.+++| |+|.|||.|.=|--+|..+... +.++....+.
T Consensus 28 ~~~~g-K~V~VvG~G~Sa~dia~~~~~~------~~~~~~~~~~ 64 (235)
T d1w4xa2 28 VDFSG-QRVGVIGTGSSGIQVSPQIAKQ------AAELFVFQRT 64 (235)
T ss_dssp CCCBT-CEEEEECCSHHHHHHHHHHHHH------BSEEEEEESS
T ss_pred CCCCC-CEEEEECCCccHHHHHHHHHhh------hccccccccc
Confidence 57999 9999999999999999999877 6665555443
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=82.12 E-value=0.7 Score=37.14 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=27.8
Q ss_pred cEEEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 112 ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
++|||=|+|.||+.+.|.|... +++|+..++..
T Consensus 1 ikigINGfGRIGR~~~R~l~~~------~i~iv~INd~~ 33 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSR------GVEVALINDLT 33 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSS
T ss_pred CEEEEECCcHHHHHHHHHHhcC------CCEEEEECCCc
Confidence 5899999999999999988877 88877666653
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=81.89 E-value=0.59 Score=38.11 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=27.9
Q ss_pred EEEEccCchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 114 IGIIG~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
|.|||.|..|-+.|..|.+. |++|++.++.
T Consensus 6 vvIIGaGi~Gls~A~~La~~------G~~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQ------GVKTLLVDAF 35 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCC
Confidence 78999999999999999999 9999988874
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.38 E-value=1.4 Score=35.10 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=72.6
Q ss_pred CCCcEEEEEc-cCchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-----CcCCEE
Q 023490 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----SGSDLV 182 (281)
Q Consensus 109 ~G~ktIGIIG-~G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l-----~~ADVV 182 (281)
+| .+|-|.| .|-.|....|.++.. |.+|+...+++. ..+.+++.|.........+.++.+ +..|+|
T Consensus 31 ~g-~~VLI~gaaGGVG~~aiQlak~~------Ga~Viat~~s~~-k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~v 102 (176)
T d1xa0a2 31 ER-GPVLVTGATGGVGSLAVSMLAKR------GYTVEASTGKAA-EHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAA 102 (176)
T ss_dssp GG-CCEEESSTTSHHHHHHHHHHHHT------TCCEEEEESCTT-CHHHHHHTTCSEEEECC---------CCSCCEEEE
T ss_pred CC-CEEEEEeccchHHHHHHHHHHHc------CCceEEecCchH-HHHHHHhcccceeeecchhHHHHHHHhhccCcCEE
Confidence 56 8899998 689999999999998 999877766544 467788888543211111222322 357788
Q ss_pred EEccCChhHHHHHHHHHhcCCCCcEEEEeCC---cchh-hhhhcccCCCCCceEEEeccCCCChhhH
Q 023490 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG---FLLG-HLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (281)
Q Consensus 183 iLavP~~~~~~vl~ei~~~mKpgaILi~aaG---~~l~-~l~~~~~~~~~~i~VIrvmPntpg~~vr 245 (281)
+=++-.. .+++.+..|+++-.++..+. .... .+.. .+.++++++.+..-...++.|
T Consensus 103 id~vgg~----~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~---~~~k~~~i~Gv~~~~~~~~~~ 162 (176)
T d1xa0a2 103 VDPVGGR----TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHP---FILRGVSLLGIDSVYCPMDLR 162 (176)
T ss_dssp EECSTTT----THHHHHHTEEEEEEEEECSCCSSSCCCCCSHH---HHHTTCEEEECCSSSCCHHHH
T ss_pred EEcCCch----hHHHHHHHhCCCceEEEeecccCcccCCCHHH---HHHCCcEEEEEeCCcCCHHHH
Confidence 8777643 46677778888776664433 2211 1111 112467777765433333443
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.33 E-value=0.96 Score=36.94 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCCcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 109 ~G~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
+| |+|-|.|. |-||.++|+.|.+. |++|.+.++.
T Consensus 1 eg-K~vlITGas~GIG~a~a~~l~~~------G~~V~~~~~~ 35 (236)
T d1dhra_ 1 EA-RRVLVYGGRGALGSRCVQAFRAR------NWWVASIDVV 35 (236)
T ss_dssp CC-CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC
Confidence 58 99999996 57999999999999 9998877654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=81.04 E-value=0.58 Score=37.80 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=28.1
Q ss_pred cEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecC
Q 023490 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (281)
Q Consensus 112 ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~ 149 (281)
|||-|.|. |-+|+.+++.|.+. |++|+..+|.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~------g~~Vi~~~r~ 34 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK------NVEVIPTDVQ 34 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS------SEEEEEECTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEeech
Confidence 67999995 99999999999998 9998776664
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=80.97 E-value=1 Score=36.46 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=28.4
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCC
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~ 150 (281)
||.|-|.|. +-||.++|+.|.+. |.+|++.+++.
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~------Ga~V~~~~~~~ 35 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAA------GHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCh
Confidence 567778884 56999999999999 99998888764
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=80.63 E-value=3.9 Score=34.14 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=54.2
Q ss_pred cccCCCcEEEEEccCchHHHHHHHHHhhhhhccCCc-EEEEEecCCc----c------c--HHHHHHCCceecCCCcCCH
Q 023490 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS----R------S--FAEARAAGFTEENGTLGDI 172 (281)
Q Consensus 106 ~~l~G~ktIGIIG~G~mG~AiA~~Lra~~~~~~~G~-~Viig~r~~~----~------s--~~~A~~~G~~~~~~t~~~~ 172 (281)
..|+. .+|.|.|.|.-|-.+|+.+.+. +. ++...++++- + . ...++.... .....++
T Consensus 22 ~~l~d-~riv~~GAGsAg~gia~~l~~~------~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~---~~~~~~l 91 (222)
T d1vl6a1 22 KKIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP---ERLSGDL 91 (222)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT---TCCCSCH
T ss_pred CChhh-cEEEEEChHHHHHHHHHHHHHh------cccceEeecceeEEEcCcccccccHHHHHHHhhhcc---hhhhcch
Confidence 45777 9999999999999999999988 76 5555665410 0 0 111111111 1123467
Q ss_pred HhhcCcCCEEEEccCChhHHHHHHHHHhcCCCCcEEE
Q 023490 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (281)
Q Consensus 173 ~E~l~~ADVViLavP~~~~~~vl~ei~~~mKpgaILi 209 (281)
.++++.+|+++...-....+ +|....|.+..+|.
T Consensus 92 ~~~l~g~~~~~g~~~~~~~~---~e~m~~~~~rPIIF 125 (222)
T d1vl6a1 92 ETALEGADFFIGVSRGNILK---PEWIKKMSRKPVIF 125 (222)
T ss_dssp HHHHTTCSEEEECSCSSCSC---HHHHTTSCSSCEEE
T ss_pred HhhccCcceecccccccccc---HHHHhhcCCCCEEE
Confidence 77777787776665432211 14455566665554
|
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=80.39 E-value=1.4 Score=38.22 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=49.0
Q ss_pred cccCCCcEEEEEcc---CchHHHHHHHHHhhhhhccCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCc
Q 023490 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (281)
Q Consensus 106 ~~l~G~ktIGIIG~---G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~----~~s~~~A~~~G~~~~~~t~~~~~E~l~~ 178 (281)
..++| ++|+++|- ++...+++..+..+. |+++.+..+.. ....+.+.+.|...+ ...++++++++
T Consensus 150 g~l~~-~~i~~vGD~~~~~v~~S~~~~~~~~~-----~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~--~~~d~~~a~~~ 221 (310)
T d1tuga1 150 GRLDN-LHVAMVGDLKYGRTVHSLTQALAKFD-----GNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAE 221 (310)
T ss_dssp SCSSS-CEEEEESCTTTCHHHHHHHHHHTTSS-----SCEEEEECCGGGCCCHHHHHHHHTTTCCEE--EESCGGGTTTT
T ss_pred CCccc-ceEEEEeccccCcchHHHHHHHHhcc-----CceEEEeCCcccccchhcccccccccceee--eeechhhhccC
Confidence 46899 99999996 678888888887761 36777665432 222344555554321 24589999999
Q ss_pred CCEEEEc
Q 023490 179 SDLVLLL 185 (281)
Q Consensus 179 ADVViLa 185 (281)
+|+|...
T Consensus 222 aDvvy~~ 228 (310)
T d1tuga1 222 VDILYMT 228 (310)
T ss_dssp CSEEEEC
T ss_pred Cceeeec
Confidence 9998753
|
| >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus subtilis [TaxId: 1423]
Probab=80.31 E-value=1.5 Score=34.85 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=48.0
Q ss_pred CcEEEEEcc-CchHHHHHHHHHhhhhhccCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCh
Q 023490 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (281)
Q Consensus 111 ~ktIGIIG~-G~mG~AiA~~Lra~~~~~~~G~~Viig~r~~~~s~~~A~~~G~~~~~~t~~~~~E~l~~ADVViLavP~~ 189 (281)
|+|||||-+ |+. .+..+.|++. |.++.+..+. +-++++|.|+|+=...
T Consensus 1 m~~igv~~~~G~~-~~~~~al~~~------G~~~~~i~~~------------------------~~l~~~D~lIlPGG~~ 49 (195)
T d2nv0a1 1 MLTIGVLGLQGAV-REHIHAIEAC------GAAGLVVKRP------------------------EQLNEVDGLILPGGES 49 (195)
T ss_dssp CCEEEEECSSSCC-HHHHHHHHHT------TCEEEEECSG------------------------GGGGGCSEEEECCSCH
T ss_pred CcEEEEEecCChH-HHHHHHHHHC------CCcEEEECCH------------------------HHHhhCCEEEECCCCc
Confidence 799999999 999 4567788888 8876654221 2256789999965332
Q ss_pred hHH-HH------HHHHHhcCCCC-cEEEEeCCcch
Q 023490 190 AQA-DN------YEKIFSCMKPN-SILGLSHGFLL 216 (281)
Q Consensus 190 ~~~-~v------l~ei~~~mKpg-aILi~aaG~~l 216 (281)
... .. ++.+....+.+ .+|.++-|+-+
T Consensus 50 ~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Ql 84 (195)
T d2nv0a1 50 TTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLII 84 (195)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHH
T ss_pred cHHHHHhhhchhcchhhhhhhhcceeeeccccHHH
Confidence 221 11 22333444444 48889988654
|